Title: Extended Structural Equation Modelling
Description: Facilitates treatment of statistical model specifications
as things that can be generated and manipulated programmatically.
Structural equation models may be specified with reticular action model matrices or paths,
linear structural relations matrices or paths, or
directly in matrix algebra.
Fit functions include full information maximum likelihood,
maximum likelihood, and weighted least squares.
Example models include confirmatory factor, multiple group, mixture
distribution, categorical threshold, modern test theory, differential
equations, state space, and many others. MacOS users can download the most up-to-date
package binaries from <http://openmx.ssri.psu.edu>.
See Neale, Hunter, Pritikin, Zahery, Brick,
Kirkpatrick, Estabrook, Bates, Maes, & Boker (2016) <doi:10.1007/s11336-014-9435-8>.
Author: Steven M. Boker [aut],
Michael C. Neale [aut],
Hermine H. Maes [aut],
Michael J. Wilde [ctb],
Michael Spiegel [aut],
Timothy R. Brick [aut],
Ryne Estabrook [aut],
Timothy C. Bates [aut],
Paras Mehta [ctb],
Timo von Oertzen [ctb],
Ross J. Gore [aut],
Michael D. Hunter [aut],
Daniel C. Hackett [ctb],
Julian Karch [ctb],
Andreas M. Brandmaier [ctb],
Joshua N. Pritikin [aut, cre],
Mahsa Zahery [aut],
Robert M. Kirkpatrick [aut],
Yang Wang [ctb],
Charles Driver [ctb],
Massachusetts Institute of Technology [cph],
S. G. Johnson [cph],
Association for Computing Machinery [cph],
Dieter Kraft [cph],
Stefan Wilhelm [cph],
Manjunath B G [cph]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>
Diff between OpenMx versions 2.9.9 dated 2018-05-11 and 2.10.0 dated 2018-08-03
DESCRIPTION | 21 MD5 | 1114 +++++----- R/0ClassUnion.R | 2 R/DefinitionVars.R | 2 R/DiagMatrix.R | 2 R/FullMatrix.R | 2 R/IdenMatrix.R | 2 R/LowerMatrix.R | 2 R/MxAlgebra.R | 2 R/MxAlgebraConvert.R | 2 R/MxAlgebraFunctions.R | 2 R/MxAlgebraObjective.R | 2 R/MxAlgebraTransform.R | 2 R/MxApply.R | 2 R/MxAutoStart.R | 26 R/MxBaseNamed.R | 2 R/MxBounds.R | 2 R/MxCommunication.R | 2 R/MxCompare.R | 2 R/MxCompute.R | 2 R/MxConstraint.R | 2 R/MxCycleDetection.R | 2 R/MxData.R | 2 R/MxDataWLS.R | 2 R/MxDeparse.R | 2 R/MxDependencies.R | 2 R/MxDetectCores.R | 2 R/MxDiff.R | 2 R/MxErrorHandling.R | 2 R/MxEval.R | 2 R/MxExpectation.R | 2 R/MxExpectationBA81.R | 2 R/MxExpectationGREML.R | 2 R/MxExpectationLISREL.R | 2 R/MxExpectationNormal.R | 30 R/MxExpectationRAM.R | 2 R/MxExpectationStateSpace.R | 2 R/MxFIMLObjective.R | 2 R/MxFactorScores.R | 2 R/MxFitFunction.R | 2 R/MxFitFunctionAlgebra.R | 2 R/MxFitFunctionGREML.R | 2 R/MxFitFunctionML.R | 2 R/MxFitFunctionR.R | 2 R/MxFitFunctionRow.R | 2 R/MxFitFunctionWLS.R | 2 R/MxFlatModel.R | 2 R/MxFlatSearchReplace.R | 2 R/MxGraph.R | 2 R/MxGraphviz.R | 2 R/MxInterval.R | 2 R/MxLISRELModel.R | 2 R/MxLISRELObjective.R | 2 R/MxMI.R | 2 R/MxMLObjective.R | 2 R/MxMatrix.R | 7 R/MxMatrixFunctions.R | 2 R/MxModel.R | 10 R/MxModelDisplay.R | 2 R/MxModelFunctions.R | 2 R/MxModelParameters.R | 2 R/MxMultiModel.R | 2 R/MxNamespace.R | 2 R/MxObjectiveMetaData.R | 2 R/MxOptions.R | 2 R/MxPath.R | 2 R/MxRAMMetaData.R | 2 R/MxRAMModel.R | 2 R/MxRAMObjective.R | 2 R/MxRAMtoML.R | 2 R/MxRObjective.R | 2 R/MxRename.R | 2 R/MxReservedNames.R | 2 R/MxRestore.R | 2 R/MxRetro.R | 2 R/MxRobustSE.R | 28 R/MxRowObjective.R | 2 R/MxRun.R | 2 R/MxRunHelperFunctions.R | 2 R/MxSE.R | 2 R/MxSaturatedModel.R | 2 R/MxSearchReplace.R | 2 R/MxSquareBracket.R | 2 R/MxSummary.R | 2 R/MxSwift.R | 2 R/MxThreshold.R | 2 R/MxTryHard.R | 2 R/MxTypes.R | 2 R/MxUnitTesting.R | 2 R/MxUntitled.R | 2 R/MxVersion.R | 4 R/MxVersion.R.in | 2 R/OriginalMx.R | 2 R/SdiagMatrix.R | 2 R/StandMatrix.R | 2 R/SymmMatrix.R | 2 R/UnitMatrix.R | 2 R/ZeroMatrix.R | 2 R/omxBrownie.R | 2 R/omxConstrainThresholds.R | 2 R/omxGetNPSOL.R | 2 R/zzz.R | 18 configure | 3 demo/AlternativeApproaches.R | 2 demo/BivariateCorrelation.R | 2 demo/BivariateHeterogeneity_MatrixRaw.R | 2 demo/BivariateHeterogeneity_PathRaw.R | 2 demo/BivariateSaturated.R | 2 demo/BivariateSaturated_MatrixCov.R | 2 demo/BivariateSaturated_MatrixCovCholesky.R | 2 demo/BivariateSaturated_MatrixRaw.R | 2 demo/BivariateSaturated_MatrixRawCholesky.R | 2 demo/BivariateSaturated_PathCov.R | 2 demo/BivariateSaturated_PathRaw.R | 2 demo/DefinitionMeans_MatrixRaw.R | 2 demo/DefinitionMeans_PathRaw.R | 2 demo/GrowthMixtureModel_MatrixRaw.R | 2 demo/GrowthMixtureModel_PathRaw.R | 2 demo/LISRELJointFactorModel.R | 2 demo/LatentGrowthCurveModel_MatrixRaw.R | 2 demo/LatentGrowthCurveModel_PathRaw.R | 2 demo/LatentGrowthCurveModel_PathRaw_ModelRec.R | 2 demo/LatentGrowthCurveModel_PathRaw_ObjectAdd.R | 2 demo/MatrixAlgebra.R | 2 demo/MultipleRegression_MatrixCov.R | 2 demo/MultipleRegression_MatrixRaw.R | 2 demo/MultipleRegression_PathCov.R | 2 demo/MultipleRegression_PathRaw.R | 2 demo/MultivariateRegression_MatrixCov.R | 2 demo/MultivariateRegression_MatrixRaw.R | 2 demo/MultivariateRegression_PathCov.R | 2 demo/MultivariateRegression_PathRaw.R | 2 demo/OneFactorJoint_MatrixRawRAM.R | 2 demo/OneFactorJoint_PathRaw.R | 2 demo/OneFactorMatrixDemo.R | 2 demo/OneFactorModel_LikelihoodVector.R | 2 demo/OneFactorModel_MatrixCov.R | 2 demo/OneFactorModel_MatrixRaw.R | 2 demo/OneFactorModel_PathCov.R | 2 demo/OneFactorModel_PathRaw.R | 2 demo/OneFactorOrdinal01_MatrixRaw.R | 2 demo/OneFactorOrdinal_MatrixRaw.R | 2 demo/OneFactorOrdinal_MatrixRawRAM.R | 2 demo/OneFactorOrdinal_PathRaw.R | 2 demo/OneFactorPathDemo.R | 2 demo/OneLocusLikelihood.R | 2 demo/RObjectiveLISRELFactorRegression.R | 2 demo/RowObjectiveFIMLBivariateSaturated.R | 2 demo/RowObjectiveSimpleExamples.R | 2 demo/SimpleCheckpoint.R | 2 demo/SimpleRegression_MatrixCov.R | 2 demo/SimpleRegression_MatrixRaw.R | 2 demo/SimpleRegression_PathCov.R | 2 demo/SimpleRegression_PathRaw.R | 2 demo/TwoFactorModel_MatrixCov.R | 2 demo/TwoFactorModel_MatrixRaw.R | 2 demo/TwoFactorModel_PathCov.R | 2 demo/TwoFactorModel_PathRaw.R | 2 demo/TwoLocusLikelihood.R | 2 demo/UnivariateSaturated.R | 2 demo/UnivariateSaturated_MatrixCov.R | 2 demo/UnivariateSaturated_MatrixRaw.R | 2 demo/UnivariateSaturated_PathCov.R | 2 demo/UnivariateSaturated_PathRaw.R | 2 demo/UnivariateTwinAnalysis.R | 2 demo/UnivariateTwinAnalysis_MatrixRaw.R | 2 demo/UnivariateTwinAnalysis_PathRaw.R | 2 demo/mxThreshold.R | 2 demo/omxConstrainMLThresholds.R | 2 inst/CITATION | 4 inst/models/failing/MultilevelLongFormatFailing.R | 2 inst/models/failing/SimpleConfidenceIntervals.R | 2 inst/models/failing/no_longer_able_to_be_run/BivariateSaturated_WLSMatrixCov.R | 2 inst/models/failing/no_longer_able_to_be_run/ExtraOrdinalVars.R | 2 inst/models/nightly/3LatentMultiRegWith2LevelModerator-a.R | 2 inst/models/nightly/3LatentMultiRegWith2LevelModerator-b.R | 2 inst/models/nightly/3LatentMultiRegWith2LevelModerator-c.R | 2 inst/models/nightly/3LatentMultiRegWith2LevelModeratorAndMissing-a.R | 2 inst/models/nightly/3LatentMultiRegWith2LevelModeratorAndMissing-b.R | 2 inst/models/nightly/3LatentMultiRegWith2LevelModeratorAndMissing-c.R | 2 inst/models/nightly/3LatentMultiRegWithContinuousModerator-a.R | 2 inst/models/nightly/3LatentMultiRegWithContinuousModerator-b.R | 2 inst/models/nightly/3LatentMultiRegWithContinuousModerator-c.R | 2 inst/models/nightly/3LatentMultiRegWithContinuousModerator-d.R | 2 inst/models/nightly/3LatentMultiRegWithContinuousModerator-e.R | 2 inst/models/nightly/BootstrapParallelNightly.R | 2 inst/models/nightly/FactorScores.R | 2 inst/models/nightly/GREML_monophenotype_1GRM.R | 2 inst/models/nightly/GREML_monophenotype_1GRM_GradDesc.R | 2 inst/models/nightly/GrowthMixtureModelRandomStarts.R | 2 inst/models/nightly/InvalidComparisonDetection.R | 2 inst/models/nightly/JointWLS.R | 2 inst/models/nightly/ModelIdentification.R | 2 inst/models/nightly/ModificationIndexCheck.R | 2 inst/models/nightly/MultigroupRobustSE_test.R | 2 inst/models/nightly/MultilevelStateSpaceEx5.R | 2 inst/models/nightly/NelderMeadUnitTesting.R | 2 inst/models/nightly/OneFactorOrdinal01_MatrixRaw.R | 2 inst/models/nightly/OneFactorOrdinal_MatrixRaw.R | 2 inst/models/nightly/PPML_100days.R | 2 inst/models/nightly/PPML_100days_cov.R | 2 inst/models/nightly/PPML_100days_cov_baseline.R | 2 inst/models/nightly/PPML_100days_raw.R | 2 inst/models/nightly/PPML_100days_raw_baseline.R | 2 inst/models/nightly/PPML_test1L2M.R | 2 inst/models/nightly/PPML_test1L3M.R | 2 inst/models/nightly/RAM-3Factor-12Indicators-covdata-a.R | 2 inst/models/nightly/RAM-3Factor-12Indicators-rawdata-a.R | 2 inst/models/nightly/RAM-3Factor-24Indicators-covdata-a-intervals.R | 2 inst/models/nightly/RAM-3Factor-24Indicators-covdata-a.R | 2 inst/models/nightly/RAM-3Factor-24Indicators-megadata-a.R | 2 inst/models/nightly/RAM-3Factor-24Indicators-rawdata-a.R | 2 inst/models/nightly/RAM-3Factor-48Indicators-covdata-a.R | 2 inst/models/nightly/RAM-3Factor-48Indicators-rawdata-a.R | 2 inst/models/nightly/RAM-3Factor-96Indicators-covdata-a.R | 2 inst/models/nightly/RegimeSwitching_MatrixRawNoCholDifferentTransitions.R | 2 inst/models/nightly/RegimeSwitching_MatrixRawNoCholDifferentTransitionsAllFixed.R | 2 inst/models/nightly/StateSpaceContinuous.R | 2 inst/models/nightly/startsTestMissing.R | 2 inst/models/nightly/startsTestNoMissing.R | 2 inst/models/nightly/thresholdModel1Factor3Variate.R | 2 inst/models/nightly/thresholdModel1Factor5Variate.R | 2 inst/models/nightly/thresholdModel1Factor5VariateWLS.R | 2 inst/models/nightly/thresholdModel1Factor8Variate.R | 2 inst/models/nightly/univACErSEM.R | 2 inst/models/passing/ACEDuplicateMatrices.R | 2 inst/models/passing/ACELRTCI20160808.R | 2 inst/models/passing/Acemix.R | 2 inst/models/passing/Acemix2.R | 2 inst/models/passing/AlgebraComputePassing.R | 2 inst/models/passing/AlgebraDeriv.R | 2 inst/models/passing/AlgebraErrorDetection.R | 2 inst/models/passing/AlgebraTransformations.R | 2 inst/models/passing/AnalyticConstraintJacobians--Eq_and_Ineq.R | 2 inst/models/passing/AnalyticConstraintJacobians--LinearObjAndIneq.R | 2 inst/models/passing/AnalyticConstraintJacobians--PowellBenchmark.R | 2 inst/models/passing/AugmentedGREMLfitfunction.R | 2 inst/models/passing/Autoregressive_MatrixCov.R | 2 inst/models/passing/Autoregressive_MatrixRaw.R | 2 inst/models/passing/Autoregressive_PathCov.R | 2 inst/models/passing/Autoregressive_PathRaw.R | 5 inst/models/passing/Autoregressive_Transpose_MatrixCov.R | 2 inst/models/passing/Autoregressive_Transpose_MatrixRaw.R | 2 inst/models/passing/Autoregressive_Tree_Matrix.R | 2 inst/models/passing/Autoregressive_Tree_Path.R | 2 inst/models/passing/BivRegRawTestSE.R | 2 inst/models/passing/BivRegStdTestSE.R | 2 inst/models/passing/BogusDefinitionVariables.R | 2 inst/models/passing/BootstrapParallel.R | 2 inst/models/passing/BukinN2_regressiontest.R | 2 inst/models/passing/CIduplicates.R | 2 inst/models/passing/CheckpointingEveryIteration.R | 2 inst/models/passing/ConfidenceIntervalsDefVar.R | 2 inst/models/passing/ConstantSubstitution.R | 2 inst/models/passing/ContinuousOnlyWLSTest.R | 2 inst/models/passing/DataErrorDetection.R | 2 inst/models/passing/DataFrame.R | 2 inst/models/passing/DefinitionMeans.R | 2 inst/models/passing/DefinitionMeansPath.R | 2 inst/models/passing/DefinitionTest2.R | 2 inst/models/passing/FIMLLikelihoodFrontend.R | 2 inst/models/passing/FitMultigroup.R | 2 inst/models/passing/FourAAAA.R | 2 inst/models/passing/GREML--151123missingDataRegressionTest.R | 2 inst/models/passing/GREML--minimal_test_model.R | 2 inst/models/passing/GREML--polyphenotype.R | 2 inst/models/passing/GREML--testStarterFunctionWithMissingData.R | 2 inst/models/passing/GREML_Error_Detection.R | 2 inst/models/passing/GREML_intercept_check.R | 2 inst/models/passing/GeneralizedEstimatingEquations.R | 2 inst/models/passing/GraphvizTest.R | 2 inst/models/passing/IgnoreFixedConfidenceIntervals.R | 2 inst/models/passing/InitializationErrorDetection.R | 2 inst/models/passing/IntroSEM-BivariateRaw.R | 2 inst/models/passing/IntroSEM-BivariateStd.R | 2 inst/models/passing/IntroSEM-MultiRegRaw.R | 2 inst/models/passing/IntroSEM-MultiRegStd.R | 2 inst/models/passing/IntroSEM-MultivariateRegRaw.R | 2 inst/models/passing/IntroSEM-OneFactorCov.R | 2 inst/models/passing/IntroSEM-OneFactorRaw.R | 2 inst/models/passing/IntroSEM-ThreeFactorScale1Test.R | 2 inst/models/passing/IntroSEM-ThreeFactorScale2Test.R | 2 inst/models/passing/IntroSEM-ThreeLatentMediationTest1.R | 2 inst/models/passing/IntroSEM-ThreeLatentMediationTest2.R | 2 inst/models/passing/IntroSEM-ThreeLatentMultipleRegTest1.R | 2 inst/models/passing/IntroSEM-ThreeLatentMultipleRegTest2.R | 2 inst/models/passing/IntroSEM-UnivariateRaw.R | 2 inst/models/passing/IntroSEM-UnivariateStd.R | 2 inst/models/passing/InvalidCovarianceMLObjective.R | 2 inst/models/passing/JointFIMLRegressionTest.R | 2 inst/models/passing/JointFIMLTest.R | 2 inst/models/passing/LAD--CheckCode6.R | 2 inst/models/passing/LCAlazarsfeld-rewrite.R | 2 inst/models/passing/LCAlazarsfeld.R | 2 inst/models/passing/LGC_MatrixCov.R | 2 inst/models/passing/LGC_PathCov.R | 2 inst/models/passing/LISRELExoEndoOnly.R | 2 inst/models/passing/LISRELFactorRegressionWithMeansFIMLOrder_MatrixRaw.R | 2 inst/models/passing/LISRELFactorRegressionWithMeans_Matrix.R | 2 inst/models/passing/LISRELFactorRegressionWithMeans_MatrixRaw.R | 2 inst/models/passing/LISRELFactorRegression_Matrix.R | 2 inst/models/passing/LisrelTypeCheck.R | 2 inst/models/passing/MLErrorConditions.R | 2 inst/models/passing/MatrixCreation.R | 2 inst/models/passing/MatrixErrorDetection.R | 7 inst/models/passing/ModelIndexErrorChecking.R | 2 inst/models/passing/ModelRemovePaths.R | 2 inst/models/passing/ModelTransformTest.R | 2 inst/models/passing/MultiRegStdTestSE.R | 2 inst/models/passing/MultilevelUniRandomSlopeInt.R | 2 inst/models/passing/MultipleGroupML.R | 2 inst/models/passing/MultipleGroupRAM.R | 2 inst/models/passing/MultipleGroupRAMconstraint.R | 2 inst/models/passing/MultipleGroupWLS.R | 2 inst/models/passing/MultipleRegression_MatrixRawReverse.R | 2 inst/models/passing/MultivariateConstraint.R | 2 inst/models/passing/MxBoundsTesting.R | 2 inst/models/passing/MxEvalDefinitionVar.R | 2 inst/models/passing/MxTryHardTest.R | 2 inst/models/passing/NameParameterOverlap.R | 2 inst/models/passing/NamesReferencesErrorDetection.R | 2 inst/models/passing/NelderMead--bothConstraintTypes.R | 2 inst/models/passing/NelderMeadErrorTesting.R | 2 inst/models/passing/NelderMeadTest--eqConstraint.R | 2 inst/models/passing/NelderMeadTest--ineqConstraints.R | 2 inst/models/passing/NelderMeadTest.R | 2 inst/models/passing/NormalML.R | 2 inst/models/passing/OneFactorModel_PathCovReverse.R | 2 inst/models/passing/OrdinalPathTest.R | 2 inst/models/passing/OrdinalTest.R | 2 inst/models/passing/OrdinalTestAlgebra.R | 2 inst/models/passing/RAM-FIML-defvars.R | 2 inst/models/passing/RAMInverseTest.R | 2 inst/models/passing/RAMObjectiveErrors.R | 2 inst/models/passing/RemoveEntriesTest.R | 2 inst/models/passing/SanityTest.R | 2 inst/models/passing/SaturatedWLSTest.R | 2 inst/models/passing/Simple--CheckCode6.R | 2 inst/models/passing/SimpleAlgebraCIs.R | 2 inst/models/passing/SimpleConfidenceIntervals.R | 2 inst/models/passing/SimpleConstraint.R | 2 inst/models/passing/SimpleCovariance.R | 2 inst/models/passing/SimpleMLAlgebraCIs.R | 2 inst/models/passing/SimpleRObjective.R | 2 inst/models/passing/StandardErrorsSimple.R | 2 inst/models/passing/StateSpaceAlg.R | 2 inst/models/passing/StateSpaceErrorCheck.R | 2 inst/models/passing/StateSpaceInputs.R | 2 inst/models/passing/StateSpaceMissingData.R | 2 inst/models/passing/StateSpaceOsc.R | 2 inst/models/passing/SubStateSpaceOsc.R | 2 inst/models/passing/Substitutions.R | 2 inst/models/passing/SummaryCheck.R | 2 inst/models/passing/SummaryFitStatistics.R | 2 inst/models/passing/TestRowObjective.R | 2 inst/models/passing/TestRowObjectiveExistenceVector.R | 2 inst/models/passing/TestUseOptimizer.R | 2 inst/models/passing/Tiny_GREML_model_for_full_debug_logging.R | 2 inst/models/passing/TwinAnalysisLikelihoodVector.R | 2 inst/models/passing/TwinAnalysis_Multivariate_Matrix_Raw.R | 2 inst/models/passing/UnivHetModTwinAnalysis_MatrixRawOrdNIQmfFv3.R | 2 inst/models/passing/UnivariateRandomInterceptWide.R | 2 inst/models/passing/UselessConstraint.R | 2 inst/models/passing/WarmStartTest.R | 2 inst/models/passing/automaticStarts.R | 2 inst/models/passing/bivCorM.R | 2 inst/models/passing/bivLognormDemo.R | 2 inst/models/passing/checkStandardizedLoadingsEtcetera.R | 2 inst/models/passing/check_models_can_be_rerun.R | 2 inst/models/passing/cycle.R | 2 inst/models/passing/defvaralgebra.R | 2 inst/models/passing/derivFilter.R | 2 inst/models/passing/dmvnorm.R | 2 inst/models/passing/jointFactorWls.R | 2 inst/models/passing/mxLog.R | 2 inst/models/passing/mxSE_test.R | 2 inst/models/passing/mxSave.R | 2 inst/models/passing/mxVersion.R | 2 inst/models/passing/mxmanual31-a.R | 2 inst/models/passing/mxmanual61-a.R | 2 inst/models/passing/mxmanual61-b.R | 2 inst/models/passing/nonlinearDefinitionTest.R | 2 inst/models/passing/omxMnor.R | 2 inst/models/passing/oneLocusLikelihood.R | 2 inst/models/passing/rfitfunc.R | 2 inst/models/passing/rowAlgTest140708.R | 2 inst/models/passing/simplestCI.R | 2 inst/models/passing/startingValues.R | 2 inst/models/passing/startingValues2.R | 2 inst/models/passing/stdizedRAMpaths--UserProvidedCov.R | 2 inst/models/passing/testAllint.R | 2 inst/models/passing/testNumericDerivWithConstraintWarning.R | 2 inst/models/passing/test_mxBootstrapStdizeRAMpaths.R | 2 inst/models/passing/test_thresh_kept_in_order.R | 2 inst/models/passing/twoLocusLikelihood.R | 2 inst/models/passing/univACEP.R | 2 inst/models/passing/univACE_drop_helper.R | 2 inst/models/passing/univSatM.R | 2 inst/models/passing/vectorEqualsT.R | 2 inst/tools/dummyFunctions.R | 2 inst/tools/failTestModels.R | 2 inst/tools/memoryTestModels.R | 2 inst/tools/parallelTestModels.R | 2 inst/tools/rprofTestModels.R | 2 inst/tools/testDocs.R | 2 inst/tools/testModels.R | 2 inst/tools/testNightlyPPML.R | 2 inst/tools/updateCopyright.sh | 32 man/MxAlgebra-class.Rd | 2 man/MxBounds-class.Rd | 2 man/MxCI-class.Rd | 2 man/MxConstraint-class.Rd | 2 man/MxData-class.Rd | 2 man/MxMatrix-class.Rd | 2 man/MxModel-class.Rd | 2 man/Named-entity.Rd | 2 man/as.statusCode.Rd | 28 man/cvectorize.Rd | 2 man/diag2vec.Rd | 2 man/eigenvec.Rd | 2 man/imxRobustSE.Rd | 26 man/imxWlsChiSquare.Rd | 2 man/imxWlsStandardErrors.Rd | 2 man/mxAlgebra.Rd | 2 man/mxAlgebraObjective.Rd | 2 man/mxAutoStart.Rd | 8 man/mxBootstrapEval.Rd | 2 man/mxBounds.Rd | 2 man/mxCI.Rd | 2 man/mxCheckIdentification.Rd | 2 man/mxCompare.Rd | 2 man/mxConstraint.Rd | 2 man/mxData.Rd | 2 man/mxDataWLS.Rd | 2 man/mxEval.Rd | 2 man/mxEvaluateOnGrid.Rd | 2 man/mxExpectationLISREL.Rd | 2 man/mxExpectationNormal.Rd | 2 man/mxExpectationRAM.Rd | 2 man/mxExpectationStateSpace.Rd | 2 man/mxExpectationStateSpaceContinuousTime.Rd | 2 man/mxFIMLObjective.Rd | 2 man/mxFactor.Rd | 2 man/mxFactorScores.Rd | 2 man/mxFitFunctionAlgebra.Rd | 2 man/mxFitFunctionML.Rd | 2 man/mxFitFunctionMultigroup.Rd | 2 man/mxFitFunctionR.Rd | 2 man/mxFitFunctionRow.Rd | 2 man/mxFitFunctionWLS.Rd | 2 man/mxGenerateData.Rd | 2 man/mxGetExpected.Rd | 2 man/mxKalmanScores.Rd | 2 man/mxLISRELObjective.Rd | 2 man/mxMI.Rd | 2 man/mxMLObjective.Rd | 2 man/mxMatrix.Rd | 5 man/mxModel.Rd | 2 man/mxOption.Rd | 4 man/mxPath.Rd | 2 man/mxRAMObjective.Rd | 2 man/mxRObjective.Rd | 2 man/mxRename.Rd | 2 man/mxRestore.Rd | 2 man/mxRowObjective.Rd | 2 man/mxRun.Rd | 2 man/mxSave.Rd | 2 man/mxThreshold.Rd | 2 man/mxTypes.Rd | 2 man/mxVersion.Rd | 2 man/myFADataRaw.Rd | 2 man/omxAllInt.Rd | 2 man/omxApply.Rd | 2 man/omxAssignFirstParameters.Rd | 2 man/omxBrownie.Rd | 2 man/omxCheckEquals.Rd | 2 man/omxCheckIdentical.Rd | 2 man/omxCheckSetEquals.Rd | 2 man/omxCheckTrue.Rd | 2 man/omxCheckWithinPercentError.Rd | 2 man/omxGetParameters.Rd | 10 man/omxGraphviz.Rd | 2 man/omxLapply.Rd | 2 man/omxLocateParameters.Rd | 24 man/omxLogical.Rd | 2 man/omxMatrixOperations.Rd | 2 man/omxMnor.Rd | 2 man/omxModelDeleteData.Rd | 2 man/omxParallelCI.Rd | 2 man/omxRMSEA.Rd | 2 man/omxSapply.Rd | 2 man/omxSaturatedModel.Rd | 2 man/omxSelectRowsAndCols.Rd | 2 man/omxSetParameters.Rd | 2 man/rvectorize.Rd | 2 man/summary.MxModel.Rd | 2 man/tr.Rd | 2 man/twinData.Rd | 2 man/vec2diag.Rd | 2 man/vech.Rd | 2 man/vech2full.Rd | 2 man/vechs.Rd | 2 man/vechs2full.Rd | 2 src/AlgebraFunctions.h | 2 src/Compute.cpp | 2 src/Compute.h | 2 src/ComputeGD.cpp | 2 src/ComputeGD.h | 2 src/ComputeNM.cpp | 2 src/ComputeNM.h | 2 src/ComputeNR.cpp | 2 src/Connectedness.h | 2 src/EnableWarnings.h | 5 src/Makevars.win | 4 src/MarkovExpectation.cpp | 2 src/MarkovFF.cpp | 2 src/ba81quad.cpp | 2 src/glue.cpp | 2 src/glue.h | 2 src/omxAlgebra.cpp | 2 src/omxAlgebra.h | 2 src/omxAlgebraFitFunction.cpp | 2 src/omxCsolnp.h | 2 src/omxData.cpp | 2 src/omxData.h | 2 src/omxDefines.h | 2 src/omxExpectation.cpp | 2 src/omxExpectation.h | 2 src/omxExportBackendState.cpp | 2 src/omxFIMLFitFunction.cpp | 2 src/omxFIMLFitFunction.h | 2 src/omxFitFunction.cpp | 2 src/omxFitFunction.h | 2 src/omxGREMLExpectation.cpp | 2 src/omxGREMLExpectation.h | 2 src/omxGREMLfitfunction.cpp | 2 src/omxHessianCalculation.cpp | 2 src/omxImportFrontendState.cpp | 2 src/omxLISRELExpectation.cpp | 2 src/omxLISRELExpectation.h | 2 src/omxMLFitFunction.cpp | 2 src/omxMatrix.cpp | 2 src/omxMatrix.h | 2 src/omxNPSOLSpecific.cpp | 2 src/omxNPSOLSpecific.h | 2 src/omxNormalExpectation.cpp | 2 src/omxRAMExpectation.cpp | 2 src/omxRFitFunction.cpp | 2 src/omxRFitFunction.h | 2 src/omxRowFitFunction.cpp | 2 src/omxRowFitFunction.h | 2 src/omxSadmvnWrapper.h | 2 src/omxState.cpp | 2 src/omxState.h | 2 src/omxStateSpaceExpectation.cpp | 2 src/omxWLSFitFunction.cpp | 2 src/sadmvn.f | 1 src/ssMLFit.cpp | 2 558 files changed, 1208 insertions(+), 1284 deletions(-)
Title: Infinitesimally Robust Estimators for Preprocessing -Omics Data
Description: Functions for the determination of optimally robust influence curves and
estimators for preprocessing omics data, in particular gene expression data.
Author: Matthias Kohl [aut, cre, cph]
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>
Diff between RobLoxBioC versions 0.9 dated 2013-09-13 and 1.1.0 dated 2018-08-03
DESCRIPTION | 33 ++- MD5 | 22 +- NAMESPACE | 18 +- R/AffySimStudyFunction.R | 240 +++++++++++++-------------- R/IlluminaSimStudyFunction.R | 256 ++++++++++++++--------------- R/KolmogorovMinDist.R | 312 +++++++++++++++++++++++------------- R/robloxbiocBeadLevelData.R | 2 inst/NEWS | 103 +++++------ man/0RobLoxBioC-package.Rd | 14 - man/KolmogorovMinDist.Rd | 31 +-- man/SimStudies.Rd | 140 ++++++++-------- man/robloxbioc.Rd | 372 +++++++++++++++++++++---------------------- 12 files changed, 816 insertions(+), 727 deletions(-)
Title: An Image Processing Toolkit
Description: Incorporates functions for image preprocessing, filtering and image recognition. The package takes advantage of 'RcppArmadillo' to speed up computationally intensive functions. The histogram of oriented gradients descriptor is a modification of the 'findHOGFeatures' function of the 'SimpleCV' computer vision platform, the average_hash(), dhash() and phash() functions are based on the 'ImageHash' python library and the Gabor Feature Extraction functions are based on 'Matlab' code of the paper, "CloudID: Trustworthy cloud-based and cross-enterprise biometric identification" by M. Haghighat, S. Zonouz, M. Abdel-Mottaleb, Expert Systems with Applications, vol. 42, no. 21, pp. 7905-7916, 2015, <doi:10.1016/j.eswa.2015.06.025>.
Author: Lampros Mouselimis [aut, cre],
Sight Machine [cph] (findHOGFeatures function of the SimpleCV computer
vision platform),
Johannes Buchner [cph] (average_hash, dhash and phash functions of the
ImageHash python library),
Mohammad Haghighat [cph] (Gabor Feature Extraction)
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between OpenImageR versions 1.0.8 dated 2018-01-16 and 1.0.9 dated 2018-08-03
DESCRIPTION | 21 ++++++----- MD5 | 32 ++++++++++++------ NAMESPACE | 2 + NEWS.md | 6 +++ R/RcppExports.R | 12 ++++++ R/gabor_feature_extraction.R |only README.md | 3 + build/vignette.rds |binary inst/COPYRIGHTS | 19 ++++++++++ inst/doc/Gabor_Feature_Extraction.Rmd |only inst/doc/Gabor_Feature_Extraction.html |only inst/doc/The_OpenImageR_package.html | 18 +++++----- inst/tmp_images/car.png |only man/GaborFeatureExtract.Rd |only src/RcppExports.cpp | 58 +++++++++++++++++++++++++++++++++ src/gabor_feature_extraction.cpp |only src/init.c | 6 +++ tests/testthat/test-gabor.R |only vignettes/Gabor_Feature_Extraction.Rmd |only vignettes/car.png |only vignettes/gabor_car.png |only vignettes/gabor_car_thresholding.png |only vignettes/gabor_filter_bank.png |only 23 files changed, 148 insertions(+), 29 deletions(-)
Title: Compositional Data Analysis in Practice
Description: Univariate and multivariate methods for compositional data analysis,
based on logratios.
Author: Michael Greenacre
Maintainer: Michael Greenacre <michael.greenacre@upf.edu>
Diff between easyCODA versions 0.23 dated 2018-05-30 and 0.25 dated 2018-08-03
easyCODA-0.23/easyCODA/data/Tellus.RData |only easyCODA-0.23/easyCODA/man/Tellus.Rd |only easyCODA-0.25/easyCODA/DESCRIPTION | 14 ++--- easyCODA-0.25/easyCODA/MD5 | 67 ++++++++++++++++--------- easyCODA-0.25/easyCODA/NAMESPACE | 4 - easyCODA-0.25/easyCODA/R/BAR.r | 49 ++++++++++++++---- easyCODA-0.25/easyCODA/R/DOT.r | 19 ++----- easyCODA-0.25/easyCODA/R/DUMMY.r |only easyCODA-0.25/easyCODA/R/ILR.r |only easyCODA-0.25/easyCODA/R/LRA.r | 14 ++--- easyCODA-0.25/easyCODA/R/PCA.r |only easyCODA-0.25/easyCODA/R/PLOT.PCA.r |only easyCODA-0.25/easyCODA/R/PLOT.RDA.r |only easyCODA-0.25/easyCODA/R/PLR.r |only easyCODA-0.25/easyCODA/R/RDA.r |only easyCODA-0.25/easyCODA/R/SLR.r |only easyCODA-0.25/easyCODA/R/STEP.r |only easyCODA-0.25/easyCODA/build/partial.rdb |binary easyCODA-0.25/easyCODA/data/cups.RData |binary easyCODA-0.25/easyCODA/data/fish.RData |only easyCODA-0.25/easyCODA/data/time.RData |only easyCODA-0.25/easyCODA/data/veg.rda |binary easyCODA-0.25/easyCODA/inst |only easyCODA-0.25/easyCODA/man/ALR.Rd | 8 +- easyCODA-0.25/easyCODA/man/BAR.Rd | 15 ++++- easyCODA-0.25/easyCODA/man/CLR.Rd | 4 - easyCODA-0.25/easyCODA/man/DOT.Rd | 11 ++-- easyCODA-0.25/easyCODA/man/DUMMY.Rd |only easyCODA-0.25/easyCODA/man/ILR.Rd |only easyCODA-0.25/easyCODA/man/LR.Rd | 10 +-- easyCODA-0.25/easyCODA/man/LR.VAR.Rd | 20 ++++--- easyCODA-0.25/easyCODA/man/LRA.Rd | 26 +++++---- easyCODA-0.25/easyCODA/man/PCA.Rd |only easyCODA-0.25/easyCODA/man/PLOT.LRA.Rd | 6 +- easyCODA-0.25/easyCODA/man/PLOT.PCA.Rd |only easyCODA-0.25/easyCODA/man/PLOT.RDA.Rd |only easyCODA-0.25/easyCODA/man/PLR.Rd |only easyCODA-0.25/easyCODA/man/RDA.Rd |only easyCODA-0.25/easyCODA/man/SLR.Rd |only easyCODA-0.25/easyCODA/man/STEP.Rd |only easyCODA-0.25/easyCODA/man/cups.Rd | 2 easyCODA-0.25/easyCODA/man/easyCODA-package.Rd | 15 ++++- easyCODA-0.25/easyCODA/man/fish.Rd |only easyCODA-0.25/easyCODA/man/invALR.Rd | 2 easyCODA-0.25/easyCODA/man/invCLR.Rd | 8 +- easyCODA-0.25/easyCODA/man/time.Rd |only easyCODA-0.25/easyCODA/man/veg.Rd | 2 47 files changed, 187 insertions(+), 109 deletions(-)
Title: Analysis of Age-Structured Demographic Models
Description: Construction and analysis of matrix population models in R.
Author: James Holland Jones <jhj1@stanford.edu>
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between demogR versions 0.5.0 dated 2017-04-04 and 0.5.1 dated 2018-08-03
ChangeLog |only DESCRIPTION | 8 ++++---- MD5 | 9 +++++---- NAMESPACE | 3 +++ man/goodman.Rd | 4 ++-- man/leslie.matrix.Rd | 2 +- 6 files changed, 15 insertions(+), 11 deletions(-)
Title: Optimally Robust Estimation - Old Version
Description: Optimally robust estimation using S4 classes and methods. Old version still needed
for current versions of ROptRegTS and RobRex.
Author: Matthias Kohl [aut, cre, cph]
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>
Diff between ROptEstOld versions 0.9.2 dated 2013-09-13 and 1.1.0 dated 2018-08-03
DESCRIPTION | 29 +++++++++---------- MD5 | 40 +++++++++++++------------- NAMESPACE | 5 +++ R/AllInitialize.R | 1 R/AllPlot.R | 8 ++--- R/ContIC.R | 14 ++++----- R/getAsRisk.R | 4 +- R/getIneffDiff.R | 12 ++++--- R/getInfCent.R | 8 ++--- R/getInfRobIC_asBias.R | 2 - R/getInfRobIC_asCov.R | 8 ++--- R/getInfRobIC_asHampel.R | 6 +-- R/infoPlot.R | 4 +- R/ksEstimator.R | 48 +++++++++++++++---------------- R/leastFavorableRadius.R | 41 +++++++++++++++++---------- R/lowerCaseRadius.R | 2 - R/radiusMinimaxIC.R | 32 ++++++++++++++------- inst/NEWS | 18 +++++++++++ inst/TOBEDONE | 2 - man/ROptEstOldConstants.Rd | 68 ++++++++++++++++++++++----------------------- man/RobModel-class.Rd | 2 - 21 files changed, 203 insertions(+), 151 deletions(-)
Title: A Fast, Easy-to-Use Database Interface
Description: Provides select, insert, update, upsert, and delete database operations. Supports 'PostgreSQL', 'MySQL', 'SQLite', and more, and plays nicely with the 'DBI' package.
Author: Andrew Kane [aut, cre]
Maintainer: Andrew Kane <andrew@chartkick.com>
Diff between dbx versions 0.1.0 dated 2018-07-05 and 0.2.1 dated 2018-08-03
dbx-0.1.0/dbx/R/dbx.R |only dbx-0.2.1/dbx/DESCRIPTION | 10 - dbx-0.2.1/dbx/MD5 | 46 +++- dbx-0.2.1/dbx/NAMESPACE | 1 dbx-0.2.1/dbx/NEWS.md | 30 +++ dbx-0.2.1/dbx/R/connect.R |only dbx-0.2.1/dbx/R/delete.R |only dbx-0.2.1/dbx/R/disconnect.R |only dbx-0.2.1/dbx/R/helpers.R |only dbx-0.2.1/dbx/R/insert.R |only dbx-0.2.1/dbx/R/select.R |only dbx-0.2.1/dbx/R/update.R |only dbx-0.2.1/dbx/R/upsert.R |only dbx-0.2.1/dbx/README.md | 204 +++++++++++++++++++-- dbx-0.2.1/dbx/man/dbxConnect.Rd | 6 dbx-0.2.1/dbx/man/dbxDelete.Rd | 2 dbx-0.2.1/dbx/man/dbxDisconnect.Rd | 2 dbx-0.2.1/dbx/man/dbxInsert.Rd | 8 dbx-0.2.1/dbx/man/dbxSelect.Rd | 2 dbx-0.2.1/dbx/man/dbxUpdate.Rd | 2 dbx-0.2.1/dbx/man/dbxUpsert.Rd | 9 dbx-0.2.1/dbx/tests/testthat.R | 2 dbx-0.2.1/dbx/tests/testthat/helper-hex-to-raw.R |only dbx-0.2.1/dbx/tests/testthat/helper-in-time-zone.R |only dbx-0.2.1/dbx/tests/testthat/helper-is.R |only dbx-0.2.1/dbx/tests/testthat/helper-run-tests.R |only dbx-0.2.1/dbx/tests/testthat/test-mariadb.R |only dbx-0.2.1/dbx/tests/testthat/test-mysql.R | 100 ---------- dbx-0.2.1/dbx/tests/testthat/test-postgres.R |only dbx-0.2.1/dbx/tests/testthat/test-postgresql.R | 116 ++--------- dbx-0.2.1/dbx/tests/testthat/test-redshift.R |only dbx-0.2.1/dbx/tests/testthat/test-sqlite.R | 86 -------- 32 files changed, 310 insertions(+), 316 deletions(-)
Title: Statistical Toolbox for Sedimentary Provenance Analysis
Description: Bundles a number of established statistical methods to facilitate the visual interpretation of large datasets in sedimentary geology. Includes functionality for adaptive kernel density estimation, principal component analysis, correspondence analysis, multidimensional scaling, generalised procrustes analysis and individual differences scaling using a variety of dissimilarity measures. Univariate provenance proxies, such as single-grain ages or (isotopic) compositions are compared with the Kolmogorov-Smirnov, Kuiper or Sircombe-Hazelton L2 distances. Categorical provenance proxies such as chemical compositions are compared with the Aitchison and Bray-Curtis distances, and point-counting data with the chi-square distance. Also included are tools to plot compositional and point-counting data on ternary diagrams, to calculate the sample size required for specified levels of statistical precision, and to assess the effects of hydraulic sorting on detrital compositions. Includes an intuitive query-based user interface for users who are not proficient in R.
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between provenance versions 2.0 dated 2018-04-24 and 2.1 dated 2018-08-03
DESCRIPTION | 8 +- MD5 | 29 ++++----- NAMESPACE | 1 R/gui.R | 19 +++--- R/io.R | 33 ++++++++++ R/kde.R | 4 - R/plot.R | 35 +++++++---- R/radialplot.R | 58 +++++++++++++++--- R/ternary.R | 148 +++++++++++++++++++++++++++--------------------- R/toolbox.R | 43 ++++++++----- man/KDEs.Rd | 5 - man/as.compositional.Rd | 2 man/as.counts.Rd |only man/get.f.Rd | 12 +-- man/plot.KDEs.Rd | 5 + man/summaryplot.Rd | 10 ++- 16 files changed, 264 insertions(+), 148 deletions(-)
Title: Formula Interface to the Grammar of Graphics
Description: Provides a formula interface to 'ggplot2' graphics.
Author: Daniel Kaplan [aut],
Randall Pruim [aut, cre]
Maintainer: Randall Pruim <rpruim@calvin.edu>
Diff between ggformula versions 0.8.0 dated 2018-06-26 and 0.9.0 dated 2018-08-03
ggformula-0.8.0/ggformula/man/pipe.Rd |only ggformula-0.9.0/ggformula/DESCRIPTION | 19 ggformula-0.9.0/ggformula/MD5 | 222 +++++++--- ggformula-0.9.0/ggformula/NAMESPACE | 24 + ggformula-0.9.0/ggformula/NEWS.md | 8 ggformula-0.9.0/ggformula/R/gf_dist.R | 2 ggformula-0.9.0/ggformula/R/gf_function2d.R |only ggformula-0.9.0/ggformula/R/gf_function_helpers.R | 34 + ggformula-0.9.0/ggformula/R/gf_functions.R | 150 +++---- ggformula-0.9.0/ggformula/R/ggstance.R |only ggformula-0.9.0/ggformula/R/newplots.R | 6 ggformula-0.9.0/ggformula/R/reexports.R | 22 - ggformula-0.9.0/ggformula/build/vignette.rds |binary ggformula-0.9.0/ggformula/inst/doc/ggformula-blog.html | 4 ggformula-0.9.0/ggformula/inst/doc/ggformula.R | 360 ++++++++--------- ggformula-0.9.0/ggformula/inst/doc/ggformula.Rmd | 144 +++--- ggformula-0.9.0/ggformula/inst/doc/ggformula.html | 160 +++++-- ggformula-0.9.0/ggformula/man/geom_lm.Rd | 18 ggformula-0.9.0/ggformula/man/geom_spline.Rd | 6 ggformula-0.9.0/ggformula/man/gf_area.Rd | 9 ggformula-0.9.0/ggformula/man/gf_ash.Rd | 15 ggformula-0.9.0/ggformula/man/gf_bar.Rd | 66 ++- ggformula-0.9.0/ggformula/man/gf_barh.Rd |only ggformula-0.9.0/ggformula/man/gf_bin2d.Rd |only ggformula-0.9.0/ggformula/man/gf_blank.Rd | 11 ggformula-0.9.0/ggformula/man/gf_boxplot.Rd | 5 ggformula-0.9.0/ggformula/man/gf_boxploth.Rd |only ggformula-0.9.0/ggformula/man/gf_col.Rd | 13 ggformula-0.9.0/ggformula/man/gf_contour.Rd | 4 ggformula-0.9.0/ggformula/man/gf_count.Rd | 9 ggformula-0.9.0/ggformula/man/gf_crossbar.Rd | 33 + ggformula-0.9.0/ggformula/man/gf_curve.Rd | 11 ggformula-0.9.0/ggformula/man/gf_density.Rd | 33 - ggformula-0.9.0/ggformula/man/gf_density_2d.Rd | 24 - ggformula-0.9.0/ggformula/man/gf_dist.Rd | 7 ggformula-0.9.0/ggformula/man/gf_errorbar.Rd | 4 ggformula-0.9.0/ggformula/man/gf_errorbarh.Rd | 8 ggformula-0.9.0/ggformula/man/gf_fitdistr.Rd | 11 ggformula-0.9.0/ggformula/man/gf_freqpoly.Rd | 10 ggformula-0.9.0/ggformula/man/gf_function2d.Rd |only ggformula-0.9.0/ggformula/man/gf_hex.Rd | 8 ggformula-0.9.0/ggformula/man/gf_histogram.Rd | 36 + ggformula-0.9.0/ggformula/man/gf_jitter.Rd | 10 ggformula-0.9.0/ggformula/man/gf_line.Rd | 17 ggformula-0.9.0/ggformula/man/gf_linerange.Rd | 33 + ggformula-0.9.0/ggformula/man/gf_lines.Rd | 14 ggformula-0.9.0/ggformula/man/gf_point.Rd | 4 ggformula-0.9.0/ggformula/man/gf_qq.Rd | 15 ggformula-0.9.0/ggformula/man/gf_quantile.Rd | 13 ggformula-0.9.0/ggformula/man/gf_raster.Rd | 11 ggformula-0.9.0/ggformula/man/gf_rect.Rd | 17 ggformula-0.9.0/ggformula/man/gf_ribbon.Rd | 7 ggformula-0.9.0/ggformula/man/gf_rug.Rd | 18 ggformula-0.9.0/ggformula/man/gf_segment.Rd | 4 ggformula-0.9.0/ggformula/man/gf_sf.Rd | 11 ggformula-0.9.0/ggformula/man/gf_smooth.Rd | 21 ggformula-0.9.0/ggformula/man/gf_spline.Rd | 8 ggformula-0.9.0/ggformula/man/gf_spoke.Rd | 14 ggformula-0.9.0/ggformula/man/gf_step.Rd | 6 ggformula-0.9.0/ggformula/man/gf_text.Rd | 25 - ggformula-0.9.0/ggformula/man/gf_tile.Rd | 9 ggformula-0.9.0/ggformula/man/gf_violin.Rd | 28 - ggformula-0.9.0/ggformula/man/layer_factory.Rd | 13 ggformula-0.9.0/ggformula/man/reexports.Rd | 3 ggformula-0.9.0/ggformula/man/stat_qqline.Rd | 3 ggformula-0.9.0/ggformula/tests |only ggformula-0.9.0/ggformula/vignettes/ggformula.Rmd | 144 +++--- 67 files changed, 1152 insertions(+), 792 deletions(-)
Title: R Interface for H2O Sparkling Water
Description: An extension package for 'sparklyr' that provides an R interface to
H2O Sparkling Water machine learning library (see <https://github.com/h2oai/sparkling-water> for more information).
Author: Jakub Hava [aut, cre],
Navdeep Gill [aut],
Erin LeDell [aut],
Michal Malohlava [aut],
JJ Allaire [aut],
H2O.ai [cph],
RStudio [cph]
Maintainer: Jakub Hava <jakub@h2o.ai>
Diff between rsparkling versions 0.2.4 dated 2018-05-22 and 0.2.5 dated 2018-08-03
rsparkling-0.2.4/rsparkling/NEWS.md |only rsparkling-0.2.4/rsparkling/inst/examples/h2ologs |only rsparkling-0.2.4/rsparkling/inst/examples/log4j.spark.log |only rsparkling-0.2.4/rsparkling/inst/examples/log4j.spark.log.2017-05-08 |only rsparkling-0.2.4/rsparkling/inst/examples/log4j.spark.log.2017-05-09 |only rsparkling-0.2.4/rsparkling/tests/run-tests-local.sh |only rsparkling-0.2.4/rsparkling/tests/testthat/h2ologs/h2o_127.0.0.1_54321-3-info.log |only rsparkling-0.2.4/rsparkling/tests/testthat/h2ologs/h2o_127.0.0.1_54321-4-warn.log |only rsparkling-0.2.4/rsparkling/tests/testthat/h2ologs/h2o_127.0.0.1_54321-5-error.log |only rsparkling-0.2.4/rsparkling/tests/testthat/h2ologs/h2o_127.0.0.1_54321-6-fatal.log |only rsparkling-0.2.4/rsparkling/tests/testthat/h2ologs/h2o_127.0.0.1_54321-httpd.log |only rsparkling-0.2.4/rsparkling/tests/testthat/h2ologs/h2o_127.0.0.1_54323-3-info.log |only rsparkling-0.2.4/rsparkling/tests/testthat/h2ologs/h2o_127.0.0.1_54323-4-warn.log |only rsparkling-0.2.4/rsparkling/tests/testthat/h2ologs/h2o_127.0.0.1_54323-5-error.log |only rsparkling-0.2.4/rsparkling/tests/testthat/h2ologs/h2o_127.0.0.1_54323-6-fatal.log |only rsparkling-0.2.4/rsparkling/tests/testthat/h2ologs/h2o_127.0.0.1_54323-httpd.log |only rsparkling-0.2.4/rsparkling/tests/testthat/h2ologs/local-1527016315221 |only rsparkling-0.2.4/rsparkling/tests/testthat/h2ologs/local-1527016402141 |only rsparkling-0.2.4/rsparkling/tests/testthat/h2ologs/local-1527016428433 |only rsparkling-0.2.4/rsparkling/tests/testthat/h2ologs/local-1527016457798 |only rsparkling-0.2.4/rsparkling/tests/testthat/log4j.spark.log |only rsparkling-0.2.4/rsparkling/tests/testthat/log4j.spark.log.2017-09-18 |only rsparkling-0.2.4/rsparkling/tests/testthat/test_aaa_install_spark.R |only rsparkling-0.2.5/rsparkling/DESCRIPTION | 28 +-- rsparkling-0.2.5/rsparkling/MD5 | 88 +++------- rsparkling-0.2.5/rsparkling/R/package.R | 8 rsparkling-0.2.5/rsparkling/R/sysdata.rda |binary rsparkling-0.2.5/rsparkling/tests/testthat.R | 23 -- rsparkling-0.2.5/rsparkling/tests/testthat/h2ologs/local-1533286821265 |only rsparkling-0.2.5/rsparkling/tests/testthat/h2ologs/local-1533288890296 |only rsparkling-0.2.5/rsparkling/tests/testthat/h2ologs/local-1533289031290 |only rsparkling-0.2.5/rsparkling/tests/testthat/h2ologs/local-1533289190907 |only rsparkling-0.2.5/rsparkling/tests/testthat/h2ologs/local-1533291665694 |only rsparkling-0.2.5/rsparkling/tests/testthat/h2ologs/local-1533292390886 |only rsparkling-0.2.5/rsparkling/tests/testthat/test_transforms.R | 26 ++ 35 files changed, 78 insertions(+), 95 deletions(-)
Title: Optimally Robust Influence Curves and Estimators for Location
and Scale
Description: Functions for the determination of optimally robust influence curves and
estimators in case of normal location and/or scale.
Author: Matthias Kohl [cre, cph],
Peter Ruckdeschel [aut, cph]
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>
Diff between RobLox versions 1.0 dated 2016-09-05 and 1.1.0 dated 2018-08-03
DESCRIPTION | 25 +- MD5 | 28 +- NAMESPACE | 15 - R/showdown.R | 244 ++++++++++---------- R/sysdata.rda |binary inst/CITATION | 5 inst/NEWS | 15 - inst/scripts/FiniteSampleCorrectionFactor.R | 8 inst/scripts/FiniteSampleCorrectionFactorLocation.R | 6 inst/scripts/FiniteSampleCorrectionFactorScale.R | 10 man/0RobLox-package.Rd | 12 man/finiteSampleCorrection.Rd | 108 ++++---- man/roblox.Rd | 2 man/rowRoblox.Rd | 2 man/showdown.Rd | 164 ++++++------- 15 files changed, 326 insertions(+), 318 deletions(-)
Title: Bindings for the 'Geospatial' Data Abstraction Library
Description: Provides bindings to the 'Geospatial' Data Abstraction Library ('GDAL') (>= 1.11.4) and access to projection/transformation operations from the 'PROJ.4' library. The 'GDAL' and 'PROJ.4' libraries are external to the package, and, when installing the package from source, must be correctly installed first. Both 'GDAL' raster and 'OGR' vector map data can be imported into R, and 'GDAL' raster data and 'OGR' vector data exported. Use is made of classes defined in the 'sp' package. Windows and Mac Intel OS X binaries (including 'GDAL', 'PROJ.4' and 'Expat') are provided on 'CRAN'.
Author: Roger Bivand [cre, aut] (<https://orcid.org/0000-0003-2392-6140>),
Tim Keitt [aut],
Barry Rowlingson [aut, ctb],
Edzer Pebesma [ctb],
Michael Sumner [ctb],
Robert Hijmans [ctb],
Even Rouault [cph, ctb],
Frank Warmerdam [cph, ctb],
Jeroen Ooms [ctb],
Colin Rundel [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgdal versions 1.3-3 dated 2018-06-22 and 1.3-4 dated 2018-08-03
ChangeLog | 18 DESCRIPTION | 8 MD5 | 20 build/vignette.rds |binary configure | 1356 +--------------------------------------- configure.ac | 41 - inst/ChangeLog | 18 inst/SVN_VERSION | 2 inst/doc/OGR_shape_encoding.pdf |binary man/spTransform-methods.Rd | 2 src/gdal-bindings.cpp | 2 11 files changed, 127 insertions(+), 1340 deletions(-)
Title: Joint Mean-Correlation Regression Approach for Discrete
Longitudinal Data
Description: Fit joint mean-correlation models for discrete longitudinal data (Tang CY,Zhang W,
Leng C, 2017 <doi:10.5705/ss.202016.0435>).
Author: Jane Lee
Maintainer: Jane Lee <mote@mail.ustc.edu.cn>
Diff between jmdl versions 0.1.0 dated 2018-07-31 and 0.2.0 dated 2018-08-03
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/consistent.R | 4 ++-- R/jmdl.R | 23 +++++++++++------------ 4 files changed, 19 insertions(+), 20 deletions(-)
Title: Two One-Sided Tests (TOST) Equivalence Testing
Description: Two one-sided tests (TOST) procedure to test equivalence for t-tests, correlations, differences between proportions, and meta-analyses, including power analysis for t-tests and correlations. Allows you to specify equivalence bounds in raw scale units or in terms of effect sizes. See: Lakens (2017) <doi:10.1177/1948550617697177>.
Author: Daniel Lakens <D.Lakens@tue.nl>
Maintainer: Daniel Lakens <D.Lakens@tue.nl>
Diff between TOSTER versions 0.3.3 dated 2018-05-08 and 0.3.4 dated 2018-08-03
DESCRIPTION | 11 +- MD5 | 87 ++++++++-------- NEWS | 12 ++ R/TOSTmeta.R | 67 ++++++++---- R/TOSTone.R | 80 +++++++++----- R/TOSTone.raw.R | 71 +++++++++---- R/TOSTpaired.R | 84 ++++++++++----- R/TOSTpaired.raw.R | 75 +++++++++---- R/TOSTr.R | 74 +++++++++---- R/TOSTtwo.R | 82 +++++++++------ R/TOSTtwo.prop.R | 95 +++++++++++------ R/TOSTtwo.raw.R | 74 ++++++++----- R/powerTOSTone.R | 2 R/powerTOSTone.raw.R | 2 R/powerTOSTpaired.R | 2 R/powerTOSTpaired.raw.R | 2 R/powerTOSTr.R | 2 R/powerTOSTtwo.R | 2 R/powerTOSTtwo.prop.R | 2 R/powerTOSTtwo.raw.R | 2 inst/CITATION | 2 inst/doc/IntroductionToTOSTER.Rmd | 6 - inst/doc/IntroductionToTOSTER.html | 193 ++++++++++++++++++++++-------------- man/TOSTmeta.Rd | 5 man/TOSTone.Rd | 5 man/TOSTone.raw.Rd | 5 man/TOSTpaired.Rd | 6 - man/TOSTpaired.raw.Rd | 4 man/TOSTr.Rd | 5 man/TOSTtwo.Rd | 4 man/TOSTtwo.prop.Rd | 4 man/TOSTtwo.raw.Rd | 4 man/dataTOSTone.Rd | 7 - man/dataTOSTtwo.Rd | 5 man/powerTOSTone.Rd | 2 man/powerTOSTone.raw.Rd | 5 man/powerTOSTpaired.Rd | 5 man/powerTOSTpaired.raw.Rd | 2 man/powerTOSTr.Rd | 2 man/powerTOSTtwo.Rd | 2 man/powerTOSTtwo.prop.Rd | 6 - man/powerTOSTtwo.raw.Rd | 2 tests/testthat/test-known_results.R |only tests/testthat/testthat.r | 2 vignettes/IntroductionToTOSTER.Rmd | 6 - 45 files changed, 718 insertions(+), 399 deletions(-)
Title: Convert Plot to 'grob' or 'ggplot' Object
Description: Convert plot function call (using expression or formula) to 'grob' or 'ggplot' object that compatible to the 'grid' and 'ggplot2' ecosystem. With this package, we are able to e.g. using 'cowplot' to align plots produced by 'base' graphics, 'grid', 'lattice', 'vcd' etc. by converting them to 'ggplot' objects.
Author: Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>)
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between ggplotify versions 0.0.2 dated 2018-04-24 and 0.0.3 dated 2018-08-03
ggplotify-0.0.2/ggplotify/man/as.grob.Rd |only ggplotify-0.0.3/ggplotify/DESCRIPTION | 8 ggplotify-0.0.3/ggplotify/MD5 | 24 +- ggplotify-0.0.3/ggplotify/NAMESPACE | 14 + ggplotify-0.0.3/ggplotify/NEWS.md | 49 ++-- ggplotify-0.0.3/ggplotify/R/as-ggplot.R | 18 + ggplotify-0.0.3/ggplotify/R/as-grob.R | 104 +++++++--- ggplotify-0.0.3/ggplotify/build/vignette.rds |binary ggplotify-0.0.3/ggplotify/inst/doc/ggplotify.R | 3 ggplotify-0.0.3/ggplotify/inst/doc/ggplotify.Rmd | 3 ggplotify-0.0.3/ggplotify/inst/doc/ggplotify.html | 224 ++++++++++++---------- ggplotify-0.0.3/ggplotify/man/as-grob.Rd |only ggplotify-0.0.3/ggplotify/man/as.ggplot.Rd | 4 ggplotify-0.0.3/ggplotify/vignettes/ggplotify.Rmd | 3 14 files changed, 282 insertions(+), 172 deletions(-)
Title: Optimally Robust Estimation
Description: Optimally robust estimation in general smoothly parameterized models using S4
classes and methods.
Author: Matthias Kohl [cre, cph],
Mykhailo Pupashenko [ctb] (contributed wrapper functions for diagnostic
plots),
Gerald Kroisandt [ctb] (contributed testing routines),
Peter Ruckdeschel [aut, cph]
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>
Diff between ROptEst versions 1.0.1 dated 2017-04-23 and 1.1.0 dated 2018-08-03
DESCRIPTION | 33 ++-- MD5 | 101 +++++++------- NAMESPACE | 9 - R/AllClass.R | 30 ++++ R/AllGeneric.R | 3 R/AllPlot.R | 35 ++++ R/RMXEOMSEMBREOBRE.R |only R/cniperCont.R | 225 +++++++++++++++++++++++++++----- R/comparePlot.R | 55 ++++++- R/getAsRisk.R | 4 R/getIneffDiff.R | 3 R/getInfLM.R | 3 R/getInfRobIC_asAnscombe.R | 24 +-- R/getInfRobIC_asBias.R | 6 R/getInfRobIC_asCov.R | 10 - R/getInfRobIC_asGRisk.R | 12 - R/getInfRobIC_asHampel.R | 17 +- R/getInfRobIC_asUnOvShoot.R | 9 - R/getInfV.R | 7 R/getModifyIC.R | 29 ++-- R/getRiskIC.R | 33 +++- R/getStartIC.R | 81 ++++++++--- R/internal.roptest.R | 9 + R/internalutilsFromRobAStBase.R | 136 +++++++++++++++---- R/lowerCaseRadius.R | 4 R/optIC.R | 79 ++++++----- R/plotWrapper.R | 13 + R/radiusMinimaxIC.R | 5 R/roptest.new.R | 72 ++++++++-- inst/NEWS | 41 +++++ inst/scripts/BinomialModel.R | 5 inst/scripts/GammaModel.R | 5 inst/scripts/MBRE.R | 24 +-- inst/scripts/NbinomModel.R | 16 +- inst/scripts/NormalLocationScaleModel.R | 6 man/0ROptEst-package.Rd | 14 + man/ORobEstimate-class.Rd |only man/RMXEOMSEMBREOBRE.Rd |only man/cniperCont.Rd | 99 +++++++++----- man/getBiasIC.Rd | 5 man/getInfRobIC.Rd | 2 man/getMaxIneff.Rd | 2 man/getModifyIC.Rd | 8 - man/getReq.Rd | 4 man/getRiskIC.Rd | 9 - man/getStartIC-methods.Rd | 22 ++- man/inputGenerator.Rd | 12 + man/internal_Cniperplots.Rd | 3 man/optIC.Rd | 20 +- man/plot-methods.Rd | 2 man/radiusMinimaxIC.Rd | 7 man/robest.Rd | 15 +- man/roptest.Rd | 17 +- 53 files changed, 1031 insertions(+), 354 deletions(-)
Title: Fit Projected 2D Profiles to Galaxy Images
Description: Get data / Define model / ??? / Profit! 'ProFit' is a Bayesian galaxy fitting tool that uses a fast 'C++' image generation library and a flexible interface to a large number of likelihood samplers.
Author: Aaron Robotham, Dan Taranu, Rodrigo Tobar
Maintainer: Aaron Robotham <aaron.robotham@uwa.edu.au>
Diff between ProFit versions 1.2.0 dated 2018-07-31 and 1.2.1 dated 2018-08-03
DESCRIPTION | 13 +- MD5 | 24 ++--- build/partial.rdb |binary configure | 16 +-- inst/doc/ProFit-Galaxy-Fit-Example.html | 14 +-- inst/doc/ProFit-Isophotal-Ellipses.html | 5 - inst/doc/ProFit-Make-Model-Image.html | 16 +-- inst/doc/ProFit-OpenCL-OpenMP.html | 4 inst/doc/ProFit-PSF-Convolution-Can-Be-Convoluted.html | 4 inst/doc/ProFit-PSF-Fit-Example.html | 4 inst/doc/ProFit-Sigma-Maps.html | 76 ++++++++--------- inst/doc/ProFit-The-Full-Monty.html | 4 man/ProFit-package.Rd | 10 +- 13 files changed, 91 insertions(+), 99 deletions(-)
Title: Prediction Rule Ensembles
Description: Derives prediction rule ensembles (PREs). Largely follows the
procedure for deriving PREs as described in Friedman & Popescu (2008;
<DOI:10.1214/07-AOAS148>), with adjustments and improvements. The
main function pre() derives prediction rule ensembles consisting of
rules and/or linear terms for continuous, binary, count, multinomial,
and multivariate continuous responses. Function gpe() derives
generalized prediction ensembles, consisting of rules, hinge and linear
functions of the predictor variables.
Author: Marjolein Fokkema [aut, cre],
Benjamin Christoffersen [aut]
Maintainer: Marjolein Fokkema <m.fokkema@fsw.leidenuniv.nl>
Diff between pre versions 0.5.0 dated 2018-05-07 and 0.6.0 dated 2018-08-03
DESCRIPTION | 12 MD5 | 77 NAMESPACE | 7 NEWS | 30 R/caret_pre_model.R |only R/gpe.R | 5 R/gpe_miscs.R | 54 R/pre.R | 2028 ++++++---- R/utils.R | 29 README.md | 27 inst/README-figures/README-unnamed-chunk-11-1.png |binary inst/README-figures/README-unnamed-chunk-4-1.png |binary man/bsnullinteract.Rd | 17 man/caret_pre_model.Rd |only man/coef.gpe.Rd | 16 man/coef.pre.Rd | 19 man/corplot.Rd | 23 man/cvpre.Rd | 67 man/gpe_rules_pre.Rd | 30 man/importance.Rd | 28 man/interact.Rd | 39 man/maxdepth_sampler.Rd | 6 man/pairplot.Rd | 26 man/plot.pre.Rd | 32 man/pre.Rd | 139 man/predict.pre.Rd | 19 man/print.gpe.Rd | 21 man/print.pre.Rd | 26 man/singleplot.Rd | 34 man/summary.gpe.Rd |only man/summary.pre.Rd |only tests/testthat/helper.R | 8 tests/testthat/previous_results/airquality_print_output.RDS |binary tests/testthat/previous_results/airquality_print_output_less_digits.RDS |binary tests/testthat/previous_results/airquality_w_importance2.RDS |binary tests/testthat/previous_results/airquality_w_importance3.RDS |binary tests/testthat/previous_results/airquality_w_pre_coef.RDS |binary tests/testthat/previous_results/airquality_w_pre_cv.RDS |binary tests/testthat/previous_results/airquality_w_pre_with_multivariate_response.RDS |only tests/testthat/previous_results/lung_w_pre_surv.RDS |only tests/testthat/previous_results/pre_summary.RDS |only tests/testthat/test_pre_misc.R | 51 tests/testthat/tests_pre.R | 98 43 files changed, 1835 insertions(+), 1133 deletions(-)
Title: Tests of White Noise using Wavelets
Description: Provides methods to test whether time series is consistent
with white noise.
Author: Delyan Savchev [aut],
Guy Nason [aut, cre]
Maintainer: Guy Nason <g.p.nason@bristol.ac.uk>
Diff between hwwntest versions 1.3 dated 2015-01-12 and 1.3.1 dated 2018-08-03
DESCRIPTION | 10 ++--- MD5 | 9 ++--- NAMESPACE | 5 ++ build |only inst/CHANGES | 5 ++ man/hwwntest-package.Rd | 85 ++++++++++++++++++++++++------------------------ 6 files changed, 64 insertions(+), 50 deletions(-)
Title: Functions to Support the ICES Transparent Assessment Framework
Description: Functions to support the ICES Transparent Assessment Framework
<http://taf.ices.dk> to organize data, methods, and results used in ICES
assessments. ICES is an organization facilitating international collaboration
in marine science.
Author: Arni Magnusson [aut, cre],
Colin Millar [aut]
Maintainer: Arni Magnusson <arni.magnusson@ices.dk>
Diff between icesTAF versions 1.6-1 dated 2018-06-28 and 1.6-2 dated 2018-08-03
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NEWS | 12 ++++++++++++ R/div.R | 2 +- R/read.taf.R | 18 ++++++++++++++---- R/rnd.R | 2 +- R/write.taf.R | 45 +++++++++++++++++++++++++++++++++++++-------- man/read.taf.Rd | 13 ++++++++++--- man/write.taf.Rd | 19 +++++++++++++------ 9 files changed, 101 insertions(+), 36 deletions(-)
Title: Weierstrass and Jacobi Elliptic Functions
Description: A suite of elliptic and related functions including Weierstrass and
Jacobi forms. Also includes various tools for manipulating and
visualizing complex functions.
Author: Robin K. S. Hankin
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between elliptic versions 1.3-7 dated 2016-05-26 and 1.3-9 dated 2018-08-03
DESCRIPTION | 12 +++++++----- MD5 | 15 ++++++++------- build/partial.rdb |only build/vignette.rds |binary inst/doc/ellipticpaper.pdf |binary inst/doc/residuetheorem.pdf |binary man/e1e2e3.Rd | 2 +- man/elliptic-package.Rd | 15 ++++++++++----- man/unimodular.Rd | 2 +- 9 files changed, 27 insertions(+), 19 deletions(-)
Title: Access 'Nomis' UK Labour Market Data
Description: Access UK official statistics from the 'Nomis' database.
'Nomis' includes data from the Census, the Labour Force Survey, DWP benefit
statistics and other economic and demographic data from the Office for
National Statistics, based around statistical geographies. See
<https://www.nomisweb.co.uk/api/v01/help> for full API documentation.
Author: Evan Odell [aut, cre] (<https://orcid.org/0000-0003-1845-808X>),
Paul Egeler [rev, ctb],
Christophe Dervieux [rev] (<https://orcid.org/0000-0003-4474-2498>)
Maintainer: Evan Odell <evanodell91@gmail.com>
Diff between nomisr versions 0.3.0 dated 2018-06-18 and 0.4.0 dated 2018-08-03
DESCRIPTION | 9 MD5 | 49 +- NAMESPACE | 2 NEWS.md | 138 ++++--- R/codelist.R | 116 +++--- R/content_type.R | 2 R/data_download.R | 679 +++++++++++++++++++------------------ R/metadata.R | 264 +++++++------- R/nomisr-package.R | 10 R/search.R | 4 R/utils-get-data.R | 90 ++-- R/utils-tidy.R |only README.md | 75 ++-- build/vignette.rds |binary inst/CITATION | 11 inst/JOSS |only inst/doc/introduction.html | 88 ++-- man/nomis_codelist.Rd | 14 man/nomis_get_data.Rd | 80 ++-- man/nomis_get_metadata.Rd | 6 man/nomis_search.Rd | 4 man/nomisr.Rd | 7 tests/testthat/test-codelist.R |only tests/testthat/test_get_data.R | 176 +++++---- tests/testthat/test_get_metadata.R | 82 ++-- 25 files changed, 1027 insertions(+), 879 deletions(-)
Title: Vectorised Tools for URL Handling and Parsing
Description: A toolkit for all URL-handling needs, including encoding and decoding,
parsing, parameter extraction and modification. All functions are
designed to be both fast and entirely vectorised. It is intended to be
useful for people dealing with web-related datasets, such as server-side
logs, although may be useful for other situations involving large sets of
URLs.
Author: Oliver Keyes [aut, cre], Jay Jacobs [aut, cre], Drew Schmidt [aut],
Mark Greenaway [ctb], Bob Rudis [ctb], Alex Pinto [ctb], Maryam Khezrzadeh [ctb], Peter Meilstrup [ctb],
Adam M. Costello [cph], Jeff Bezanson [cph], Peter Meilstrup [ctb], Xueyuan Jiang [ctb]
Maintainer: Oliver Keyes <ironholds@gmail.com>
Diff between urltools versions 1.7.0 dated 2018-01-20 and 1.7.1 dated 2018-08-03
urltools-1.7.0/urltools/src/Makevars |only urltools-1.7.1/urltools/DESCRIPTION | 8 ++++---- urltools-1.7.1/urltools/MD5 | 7 +++---- urltools-1.7.1/urltools/NEWS | 6 ++++++ urltools-1.7.1/urltools/build/vignette.rds |binary 5 files changed, 13 insertions(+), 8 deletions(-)
Title: Quasi-Periodic Time Series Characteristics
Description: Calculate Characteristics of Quasi-Periodic Time Series, e.g. Estuarine Water Levels.
Author: Tom Cox <tom.cox@uantwerp.be>, Lennert Schepers <lennert.schepers@uantwerp.be>
Maintainer: Tom Cox <tom.cox@uantwerp.be>
Diff between Tides versions 2.0 dated 2017-09-20 and 2.1 dated 2018-08-03
ChangeLog | 3 +++ DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NAMESPACE | 2 +- R/Tides.R | 40 ++++++++++++++++++++++++++-------------- R/gapstsExt.R | 2 +- build/vignette.rds |binary data/example.RData |binary inst/doc/Tides.pdf |binary 9 files changed, 42 insertions(+), 27 deletions(-)
Title: Robust Asymptotic Statistics
Description: Base S4-classes and functions for robust asymptotic statistics.
Author: Matthias Kohl [cre, cph, aut],
Peter Ruckdeschel [aut, cph],
Mykhailo Pupashenko [ctb] (contributed wrapper functions for diagnostic
plots),
Gerald Kroisandt [ctb] (contributed testing routines),
R Core Team [ctb, cph] (for source file 'format.perc')
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>
Diff between RobAStBase versions 1.0.2 dated 2018-06-01 and 1.1.0 dated 2018-08-03
DESCRIPTION | 29 MD5 | 122 +-- NAMESPACE | 11 R/AllClass.R | 7 R/AllGeneric.R | 3 R/AllPlot.R | 675 +++++++++++------- R/IC.R | 32 R/RobAStBaseOptions.R | 3 R/comparePlot.R | 717 +++++++++++++------ R/cutoff-class.R | 2 R/ddPlot.R | 209 +++++ R/ddPlot_utils.R | 128 ++- R/getBiasIC.R | 11 R/getFiRisk.R | 9 R/getRiskIC.R | 84 +- R/infoPlot.R | 1599 ++++++++++++++++++++++++++------------------ R/internalGridHelpers.R | 315 ++++++++ R/internalSelectLabel.R |only R/kStepEstimate.R | 1 R/kStepEstimator.R | 60 + R/oneStepEstimator.R | 4 R/optIC.R | 8 R/outlyingPlot.R | 130 ++- R/plotRescaledAxis.R | 6 R/plotWrapper.R | 73 +- R/ptnorm-convtnorm.R |only R/qqplot.R | 90 +- R/returnlevelplot.R |only R/selectorder.R | 141 +++ R/utils.R | 7 inst/NEWS | 925 +++++++++++++------------ inst/TOBEDONE | 2 inst/doc/InfluenceCurve.eps | 1094 +++++++++++++++--------------- inst/doc/InfluenceCurve.pdf |binary inst/doc/Neighborhood.eps | 892 ++++++++++++------------ inst/doc/Neighborhood.pdf |binary inst/doc/RobModel.eps | 842 +++++++++++------------ inst/doc/RobModel.pdf |binary inst/doc/RobWeight.eps | 944 ++++++++++++------------- inst/doc/RobWeight.pdf |binary man/0RobAStBase-package.Rd | 115 +-- man/ComparePlotWrapper.Rd | 9 man/HampIC-class.Rd | 3 man/InfoPlotWrapper.Rd | 9 man/PlotICWrapper.Rd | 11 man/RobAStBaseOptions.Rd | 19 man/comparePlot.Rd | 121 ++- man/ddPlot-methods.Rd | 37 - man/getBiasIC.Rd | 7 man/getRiskIC.Rd | 18 man/infoPlot.Rd | 124 ++- man/internal_GridHelpers.Rd | 31 man/internal_plots.Rd | 87 ++ man/internals.Rd | 13 man/internals_ddPlot.Rd | 13 man/kStepEstimate-class.Rd | 8 man/kStepEstimator.Rd | 9 man/makeIC-methods.Rd | 2 man/oneStepEstimator.Rd | 4 man/optIC.Rd | 4 man/outlyingPlotIC.Rd | 65 + man/plot-methods.Rd | 82 +- man/qqplot.Rd | 27 man/returnlevelplot.Rd |only 64 files changed, 6023 insertions(+), 3970 deletions(-)
Title: Flexible Tools for Multiple Imputation
Description: Provides a set of tools that can be used across 'data.frame' and
'imputationList' objects.
Author: James Conigrave
Maintainer: James Conigrave <james.conigrave@gmail.com>
Diff between Conigrave versions 0.3.0 dated 2018-06-26 and 0.4.0 dated 2018-08-03
DESCRIPTION | 13 +++++++------ MD5 | 18 +++++++++++------- NAMESPACE | 20 ++++++++++++++++++++ R/Automodel.R |only R/Interaction.plot.R | 47 +++++++++++++++++++++-------------------------- R/check_names.R |only R/correlatrix.R | 31 +++---------------------------- R/get.numeric.R | 3 --- man/autoModel.Rd |only man/check_names.Rd |only man/correlatrix.Rd | 8 ++++---- man/int.plot.Rd | 39 ++++++++++++++++++++------------------- 12 files changed, 86 insertions(+), 93 deletions(-)
Title: Tools for CM SAF NetCDF Data
Description: The Satellite Application Facility on Climate Monitoring (CM SAF)
is a ground segment of the European Organization for the Exploitation of
Meteorological Satellites (EUMETSAT) and one of EUMETSATs Satellite Application
Facilities. The CM SAF contributes to the sustainable observing of the climate
system by providing essential climate variables related to the energy and water
cycle of the atmosphere (<http://www.cmsaf.eu>). It is a joint cooperation of seven
National Meteorological and Hydrological Services.
The 'cmsaf' R-package provides a collection of R-operators for the analysis and
manipulation of CM SAF NetCDF formatted data. The 'cmsaf' R-package is tested
for CM SAF NetCDF data, which are structured in three-dimensional arrays
(longitude, latitude, time) on a rectangular grid. Layered CM SAF data have to
be converted with the provided levbox_mergetime() function. The 'cmsaf' R-package
operators have only minor checks for deviations from the recommended data structure,
and give only few specific error messages.
Scripts for an easy application of the 'cmsaf' package operators and the preparation
and visualization of CM SAF NetCDF data are provided at the CM SAF webpage
(<http://www.cmsaf.eu/EN/Products/Tools/Tools_node.html>).
Author: Steffen Kothe <Steffen.Kothe@dwd.de>
Maintainer: Steffen Kothe <Steffen.Kothe@dwd.de>
Diff between cmsaf versions 1.9.2 dated 2018-07-26 and 1.9.3 dated 2018-08-03
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- man/cmsaf-package.Rd | 4 ++-- man/ydaymean.Rd | 4 ++-- 4 files changed, 11 insertions(+), 11 deletions(-)
Title: Type-Specific Failure Rate and Hazard Rate on Competing Risks
Data
Description: Given a failure type, the function computes covariate-specific probability of failure over time and covariate-specific conditional hazard rate based on possibly right-censored competing risk data. Specifically, it computes the non-parametric maximum-likelihood estimates of these quantities and their asymptotic variances in a semi-parametric mixture model for competing-risks data, as described in Chang et al. (2007a).
Author: Chung-Hsing Chen, I-Shou Chang and Chao A. Hsiung
Maintainer: Chung-Hsing Chen <chchen@nhri.org.tw>
Diff between NPMLEcmprsk versions 2.1 dated 2015-04-29 and 3.0 dated 2018-08-03
NPMLEcmprsk-2.1/NPMLEcmprsk/R/improved_CompetingRisk_Code_v10.1.r |only NPMLEcmprsk-2.1/NPMLEcmprsk/R/improved_CompetingRisk_Code_v10.2.r |only NPMLEcmprsk-2.1/NPMLEcmprsk/R/improved_CompetingRisk_Code_v10.3.r |only NPMLEcmprsk-3.0/NPMLEcmprsk/DESCRIPTION | 9 + NPMLEcmprsk-3.0/NPMLEcmprsk/MD5 | 10 -- NPMLEcmprsk-3.0/NPMLEcmprsk/NAMESPACE | 2 NPMLEcmprsk-3.0/NPMLEcmprsk/R/improved_CompetingRisk_Code_v10.5.r |only NPMLEcmprsk-3.0/NPMLEcmprsk/man/NPMLEcmprsk.Rd | 46 +++++----- 8 files changed, 34 insertions(+), 33 deletions(-)
Title: Command-Line Interface Specification Language
Description: Define a command-line interface by just giving it
a description in the specific format.
Author: Edwin de Jonge (edwindjonge@gmail.com)
Maintainer: Edwin de Jonge <edwindjonge@gmail.com>
Diff between docopt versions 0.4.5 dated 2016-06-13 and 0.6 dated 2018-08-03
docopt-0.4.5/docopt/inst/example.R |only docopt-0.6/docopt/DESCRIPTION | 10 docopt-0.6/docopt/MD5 | 32 - docopt-0.6/docopt/NAMESPACE | 15 docopt-0.6/docopt/NEWS | 3 docopt-0.6/docopt/R/Tokens.R | 3 docopt-0.6/docopt/R/docopt.R | 5 docopt-0.6/docopt/R/parse.R | 547 +++++++++---------- docopt-0.6/docopt/R/pkg.R | 22 docopt-0.6/docopt/R/stringr_dropin.R |only docopt-0.6/docopt/README.md | 6 docopt-0.6/docopt/man/as.character-Pattern-method.Rd | 27 docopt-0.6/docopt/man/as.character-Tokens-method.Rd | 27 docopt-0.6/docopt/man/docopt-package.Rd | 27 docopt-0.6/docopt/man/docopt.Rd | 115 +-- docopt-0.6/docopt/man/sub-Tokens-method.Rd | 27 docopt-0.6/docopt/man/subset-Tokens-method.Rd | 27 docopt-0.6/docopt/tests/testthat/test-issues.R | 2 18 files changed, 447 insertions(+), 448 deletions(-)
Title: Correlated Trait Locus (CTL) Mapping in R
Description: Analysis of genetical genomic data to identify genetic loci associated with correlation changes in quantitative traits (CTL).
Author: Danny Arends <Danny.Arends@gmail.com>
Maintainer: Danny Arends <Danny.Arends@gmail.com>
Diff between ctl versions 1.0.0-1 dated 2018-07-06 and 1.0.0-2 dated 2018-08-03
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/doc/manual.pdf |binary src/mapctl.c | 13 ++++++++++++- tests/test_openmp.R | 4 +--- 5 files changed, 21 insertions(+), 12 deletions(-)