Title: Thematic Maps
Description: Thematic maps are geographical maps in which spatial data distributions are visualized. This package offers a flexible, layer-based, and easy to use approach to create thematic maps, such as choropleths and bubble maps.
Author: Martijn Tennekes [aut, cre],
Joel Gombin [ctb],
Sebastian Jeworutzki [ctb],
Kent Russell [ctb],
Richard Zijdeman [ctb],
John Clouse [ctb],
Robin Lovelace [ctb],
Jakub Nowosad [ctb],
Jannes Muenchow [ctb]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between tmap versions 2.0 dated 2018-07-15 and 2.1 dated 2018-08-06
DESCRIPTION | 8 ++--- MD5 | 52 +++++++++++++++++----------------- NEWS | 7 ++++ R/facet_functions.R | 2 - R/get_sf_coordinates.R | 6 +++ R/num2pal.R | 38 +++++++++++++++--------- R/order_x.R | 6 +-- R/prearrange_element_order.R | 2 - R/preprocess_gt.R | 10 +++--- R/preprocess_shapes.R | 64 ++++++++++++++++++++++++++---------------- R/print_tmap.R | 7 +++- R/process_aes.R | 10 ++++-- R/process_layers.R | 4 +- R/process_raster.R | 12 +++++-- R/process_shapes.R | 11 ++++++- R/tm_misc_elements.R | 4 +- R/tmap_arrange.R | 10 +++++- R/tmap_mode.R | 12 ------- R/tmap_options.R | 34 +++++++++++++++++++++- R/view_tmap.R | 60 ++++++++++++++++++++++++++++----------- R/xxx_raster.R | 2 - inst/doc/tmap-getstarted.html | 4 +- man/tm_facets.Rd | 10 +++--- man/tm_polygons.Rd | 1 man/tm_text.Rd | 2 - man/tmap_arrange.Rd | 4 +- man/tmap_options.Rd | 7 +++- 27 files changed, 252 insertions(+), 137 deletions(-)
Title: Client for Various 'CrossRef' 'APIs'
Description: Client for various 'CrossRef' 'APIs', including 'metadata' search
with their old and newer search 'APIs', get 'citations' in various formats
(including 'bibtex', 'citeproc-json', 'rdf-xml', etc.), convert 'DOIs'
to 'PMIDs', and 'vice versa', get citations for 'DOIs', and get links to
full text of articles when available.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Carl Boettiger [aut],
Ted Hart [aut],
Karthik Ram [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rcrossref versions 0.8.0 dated 2017-12-03 and 0.8.4 dated 2018-08-06
DESCRIPTION | 23 +- LICENSE | 2 MD5 | 74 ++++---- NAMESPACE | 22 ++ NEWS.md | 24 ++ R/crAddins.R | 280 ++++++++++++++++++++++++++-------- R/cr_cn.r | 66 +++++--- R/cr_fundref.r | 2 R/cr_journals.r | 40 +++- R/cr_licenses.R | 2 R/cr_members.r | 2 R/cr_prefixes.r | 2 R/cr_r.r | 2 R/cr_types.R | 2 R/cr_works.R | 21 +- R/rcrossref-package.R | 11 - R/zzz.R | 59 ++++++- README.md | 256 +++++++++++++++++-------------- build/vignette.rds |binary inst/doc/crossref_vignette.Rmd | 174 ++++++++++++--------- inst/doc/crossref_vignette.html | 174 ++++++++++++--------- inst/vign/crossref_vignette.md | 174 ++++++++++++--------- man/cr_agency.Rd | 4 man/cr_cn.Rd | 31 ++- man/cr_funders.Rd | 83 +++++----- man/cr_journals.Rd | 94 ++++++----- man/cr_licenses.Rd | 40 ++-- man/cr_members.Rd | 77 +++++---- man/cr_prefixes.Rd | 77 +++++---- man/cr_types.Rd | 77 +++++---- man/cr_works.Rd | 87 ++++++---- tests/testthat/test-cr_cn.R | 25 ++- tests/testthat/test-cr_journals.R | 20 ++ tests/testthat/test-cr_members.R | 4 tests/testthat/test-cr_prefixes.R | 2 tests/testthat/test-cr_works.R | 18 +- tests/testthat/test-cr_works_cursor.R | 2 vignettes/crossref_vignette.Rmd | 174 ++++++++++++--------- 38 files changed, 1416 insertions(+), 811 deletions(-)
Title: Tidy Statistical Inference
Description: The objective of this package is to perform inference using an expressive statistical grammar that coheres with the tidy design framework.
Author: Andrew Bray [aut, cre],
Chester Ismay [aut],
Ben Baumer [aut],
Mine Cetinkaya-Rundel [aut],
Ted Laderas [ctb],
Nick Solomon [ctb],
Johanna Hardin [ctb],
Albert Kim [ctb],
Neal Fultz [ctb],
Doug Friedman [ctb],
Richie Cotton [ctb],
Evgeni Chasnovski [ctb]
Maintainer: Andrew Bray <abray@reed.edu>
Diff between infer versions 0.3.0 dated 2018-07-11 and 0.3.1 dated 2018-08-06
DESCRIPTION | 22 +- MD5 | 43 ++--- R/calculate.R | 79 ++++------ R/conf_int.R | 21 +- R/generate.R | 22 +- R/hypothesize.R | 16 +- R/p_value.R | 7 R/print_methods.R | 17 +- R/rep_sample_n.R | 15 +- R/set_params.R | 2 R/specify.R | 42 ++--- R/utils.R | 260 ++++++++++++++++++++++------------- R/visualize.R | 137 +++++++++--------- R/wrappers.R | 29 ++- inst/doc/chisq_test.html | 12 - inst/doc/flights_examples.html | 20 +- inst/doc/observed_stat_examples.html | 64 ++++---- inst/doc/two_sample_t.html | 15 -- man/get_ci.Rd | 2 tests/testthat/test-calculate.R | 10 + tests/testthat/test-utils.R |only tests/testthat/test-visualize.R | 4 tests/testthat/test-wrappers.R | 28 +++ 23 files changed, 493 insertions(+), 374 deletions(-)
Title: Dynamical Systems Approach to Infectious Disease Epidemiology
Description: A collection of Shiny apps that allow for the simulation and
exploration of various infectious disease transmission dynamics scenarios.
The purpose of the package is to help individuals learn
about infectious disease epidemiology from a dynamical systems perspective.
All apps include explanations of the underlying models and instructions on
what to do with the models.
Author: Andreas Handel [aut, cre] (<https://orcid.org/0000-0002-4622-1146>),
Isaac Fung [ctb],
Spencer Hall [ctb],
Ben Listyg [ctb],
Brian McKay [ctb],
John Rossow [ctb],
Sina Solaimanpour [ctb],
Henok Woldu [ctb]
Maintainer: Andreas Handel <ahandel@uga.edu>
Diff between DSAIDE versions 0.6.0 dated 2017-09-30 and 0.7.0 dated 2018-08-06
DSAIDE-0.6.0/DSAIDE/R/generate_instruction_tabs.R |only DSAIDE-0.6.0/DSAIDE/R/generate_simoutput.R |only DSAIDE-0.6.0/DSAIDE/R/simulate_stochastic.R |only DSAIDE-0.6.0/DSAIDE/inst/shinyapps/CharacteristicsofID/www |only DSAIDE-0.6.0/DSAIDE/inst/shinyapps/DirectTransmission/www |only DSAIDE-0.6.0/DSAIDE/inst/shinyapps/EnvironmentalTransmission/www |only DSAIDE-0.6.0/DSAIDE/inst/shinyapps/EvolutionaryDynamics/www |only DSAIDE-0.6.0/DSAIDE/inst/shinyapps/HostHeterogeneity/www |only DSAIDE-0.6.0/DSAIDE/inst/shinyapps/IDControl |only DSAIDE-0.6.0/DSAIDE/inst/shinyapps/IDDynamicsIntro/www |only DSAIDE-0.6.0/DSAIDE/inst/shinyapps/IDPatterns/www |only DSAIDE-0.6.0/DSAIDE/inst/shinyapps/MainMenu/www |only DSAIDE-0.6.0/DSAIDE/inst/shinyapps/MultiPathogen/www |only DSAIDE-0.6.0/DSAIDE/inst/shinyapps/ReproductiveNumber |only DSAIDE-0.6.0/DSAIDE/inst/shinyapps/StochasticDynamics |only DSAIDE-0.6.0/DSAIDE/inst/shinyapps/VectorTransmission/www |only DSAIDE-0.6.0/DSAIDE/inst/shinyapps/allappdocumentation |only DSAIDE-0.6.0/DSAIDE/inst/shinyapps/documentationtemplate |only DSAIDE-0.6.0/DSAIDE/inst/shinyapps/media |only DSAIDE-0.6.0/DSAIDE/inst/shinyapps/styles |only DSAIDE-0.6.0/DSAIDE/inst/simulatorfunctions/simulate_stochastic.R |only DSAIDE-0.6.0/DSAIDE/man/generate_instruction_tabs.Rd |only DSAIDE-0.6.0/DSAIDE/man/generate_simoutput.Rd |only DSAIDE-0.6.0/DSAIDE/man/simulate_stochastic.Rd |only DSAIDE-0.7.0/DSAIDE/DESCRIPTION | 41 - DSAIDE-0.7.0/DSAIDE/MD5 | 335 ++++------ DSAIDE-0.7.0/DSAIDE/NAMESPACE | 13 DSAIDE-0.7.0/DSAIDE/NEWS.md | 45 + DSAIDE-0.7.0/DSAIDE/R/DSAIDE.R | 35 - DSAIDE-0.7.0/DSAIDE/R/dsaideapps.R |only DSAIDE-0.7.0/DSAIDE/R/dsaidemenu.R | 41 - DSAIDE-0.7.0/DSAIDE/R/generate_documentation.R |only DSAIDE-0.7.0/DSAIDE/R/generate_plots.R |only DSAIDE-0.7.0/DSAIDE/R/generate_text.R |only DSAIDE-0.7.0/DSAIDE/R/simulate_directtransmission.R | 28 DSAIDE-0.7.0/DSAIDE/R/simulate_environmentaltransmission.R | 33 DSAIDE-0.7.0/DSAIDE/R/simulate_evolution.R | 39 - DSAIDE-0.7.0/DSAIDE/R/simulate_heterogeneity.R | 28 DSAIDE-0.7.0/DSAIDE/R/simulate_idcharacteristics.R | 31 DSAIDE-0.7.0/DSAIDE/R/simulate_idcontrol.R | 28 DSAIDE-0.7.0/DSAIDE/R/simulate_idpatterns.R | 26 DSAIDE-0.7.0/DSAIDE/R/simulate_introduction.R | 41 - DSAIDE-0.7.0/DSAIDE/R/simulate_multipathogen.R | 29 DSAIDE-0.7.0/DSAIDE/R/simulate_reproductivenumber.R | 27 DSAIDE-0.7.0/DSAIDE/R/simulate_stochastic_SEIR.R |only DSAIDE-0.7.0/DSAIDE/R/simulate_stochastic_SIR.R |only DSAIDE-0.7.0/DSAIDE/R/simulate_vectortransmission.R | 23 DSAIDE-0.7.0/DSAIDE/build/vignette.rds |binary DSAIDE-0.7.0/DSAIDE/inst/CITATION |only DSAIDE-0.7.0/DSAIDE/inst/doc/DSAIDE.R | 39 - DSAIDE-0.7.0/DSAIDE/inst/doc/DSAIDE.Rmd | 84 +- DSAIDE-0.7.0/DSAIDE/inst/doc/DSAIDE.html | 167 +--- DSAIDE-0.7.0/DSAIDE/inst/docsfordevelopers/documentation.md | 157 ++-- DSAIDE-0.7.0/DSAIDE/inst/docsfordevelopers/newappfiles |only DSAIDE-0.7.0/DSAIDE/inst/media |only DSAIDE-0.7.0/DSAIDE/inst/shinyapps/CharacteristicsofID/CharacteristicsofID_Documentation.Rmd |only DSAIDE-0.7.0/DSAIDE/inst/shinyapps/CharacteristicsofID/CharacteristicsofID_Documentation.html |only DSAIDE-0.7.0/DSAIDE/inst/shinyapps/CharacteristicsofID/app.R | 103 ++- DSAIDE-0.7.0/DSAIDE/inst/shinyapps/DirectTransmission/DirectTransmission_Documentation.Rmd |only DSAIDE-0.7.0/DSAIDE/inst/shinyapps/DirectTransmission/DirectTransmission_Documentation.html |only DSAIDE-0.7.0/DSAIDE/inst/shinyapps/DirectTransmission/app.R | 151 +++- DSAIDE-0.7.0/DSAIDE/inst/shinyapps/EnvironmentalTransmission/EnvironmentalTransmission_Documentation.Rmd |only DSAIDE-0.7.0/DSAIDE/inst/shinyapps/EnvironmentalTransmission/EnvironmentalTransmission_Documentation.html |only DSAIDE-0.7.0/DSAIDE/inst/shinyapps/EnvironmentalTransmission/app.R | 142 +++- DSAIDE-0.7.0/DSAIDE/inst/shinyapps/EvolutionaryDynamics/EvolutionaryDynamics_Documentation.Rmd |only DSAIDE-0.7.0/DSAIDE/inst/shinyapps/EvolutionaryDynamics/EvolutionaryDynamics_Documentation.html |only DSAIDE-0.7.0/DSAIDE/inst/shinyapps/EvolutionaryDynamics/app.R | 198 ++++- DSAIDE-0.7.0/DSAIDE/inst/shinyapps/HostHeterogeneity/HostHeterogeneity_Documentation.Rmd |only DSAIDE-0.7.0/DSAIDE/inst/shinyapps/HostHeterogeneity/HostHeterogeneity_Documentation.html |only DSAIDE-0.7.0/DSAIDE/inst/shinyapps/HostHeterogeneity/app.R | 180 ++++- DSAIDE-0.7.0/DSAIDE/inst/shinyapps/IDControl1 |only DSAIDE-0.7.0/DSAIDE/inst/shinyapps/IDControl2 |only DSAIDE-0.7.0/DSAIDE/inst/shinyapps/IDDynamicsIntro/IDDynamicsIntro_Documentation.Rmd |only DSAIDE-0.7.0/DSAIDE/inst/shinyapps/IDDynamicsIntro/IDDynamicsIntro_Documentation.html |only DSAIDE-0.7.0/DSAIDE/inst/shinyapps/IDDynamicsIntro/app.R | 158 +++- DSAIDE-0.7.0/DSAIDE/inst/shinyapps/IDPatterns/IDPatterns_Documentation.Rmd |only DSAIDE-0.7.0/DSAIDE/inst/shinyapps/IDPatterns/IDPatterns_Documentation.html |only DSAIDE-0.7.0/DSAIDE/inst/shinyapps/IDPatterns/app.R | 144 +++- DSAIDE-0.7.0/DSAIDE/inst/shinyapps/MainMenu/app.R | 179 ++--- DSAIDE-0.7.0/DSAIDE/inst/shinyapps/MultiPathogen/MultiPathogen_Documentation.Rmd |only DSAIDE-0.7.0/DSAIDE/inst/shinyapps/MultiPathogen/MultiPathogen_Documentation.html |only DSAIDE-0.7.0/DSAIDE/inst/shinyapps/MultiPathogen/app.R | 150 +++- DSAIDE-0.7.0/DSAIDE/inst/shinyapps/ReproductiveNumber1 |only DSAIDE-0.7.0/DSAIDE/inst/shinyapps/ReproductiveNumber2 |only DSAIDE-0.7.0/DSAIDE/inst/shinyapps/StochasticSEIR |only DSAIDE-0.7.0/DSAIDE/inst/shinyapps/StochasticSIR |only DSAIDE-0.7.0/DSAIDE/inst/shinyapps/VectorTransmission/VectorTransmission_Documentation.Rmd |only DSAIDE-0.7.0/DSAIDE/inst/shinyapps/VectorTransmission/VectorTransmission_Documentation.html |only DSAIDE-0.7.0/DSAIDE/inst/shinyapps/VectorTransmission/app.R | 133 +++ DSAIDE-0.7.0/DSAIDE/inst/simulatorfunctions/generate_documentation.R |only DSAIDE-0.7.0/DSAIDE/inst/simulatorfunctions/simulate_directtransmission.R | 18 DSAIDE-0.7.0/DSAIDE/inst/simulatorfunctions/simulate_environmentaltransmission.R | 21 DSAIDE-0.7.0/DSAIDE/inst/simulatorfunctions/simulate_evolution.R | 31 DSAIDE-0.7.0/DSAIDE/inst/simulatorfunctions/simulate_heterogeneity.R | 16 DSAIDE-0.7.0/DSAIDE/inst/simulatorfunctions/simulate_idcharacteristics.R | 8 DSAIDE-0.7.0/DSAIDE/inst/simulatorfunctions/simulate_idcontrol.R | 18 DSAIDE-0.7.0/DSAIDE/inst/simulatorfunctions/simulate_idpatterns.R | 8 DSAIDE-0.7.0/DSAIDE/inst/simulatorfunctions/simulate_introduction.R | 19 DSAIDE-0.7.0/DSAIDE/inst/simulatorfunctions/simulate_multipathogen.R | 15 DSAIDE-0.7.0/DSAIDE/inst/simulatorfunctions/simulate_reproductivenumber.R | 19 DSAIDE-0.7.0/DSAIDE/inst/simulatorfunctions/simulate_stochastic_SEIR.R |only DSAIDE-0.7.0/DSAIDE/inst/simulatorfunctions/simulate_stochastic_SIR.R |only DSAIDE-0.7.0/DSAIDE/inst/simulatorfunctions/simulate_vectortransmission.R | 7 DSAIDE-0.7.0/DSAIDE/man/DSAIDE.Rd | 36 - DSAIDE-0.7.0/DSAIDE/man/dsaideapps.Rd |only DSAIDE-0.7.0/DSAIDE/man/dsaidemenu.Rd | 2 DSAIDE-0.7.0/DSAIDE/man/generate_documentation.Rd |only DSAIDE-0.7.0/DSAIDE/man/generate_plots.Rd |only DSAIDE-0.7.0/DSAIDE/man/generate_text.Rd |only DSAIDE-0.7.0/DSAIDE/man/simulate_directtransmission.Rd | 23 DSAIDE-0.7.0/DSAIDE/man/simulate_environmentaltransmission.Rd | 25 DSAIDE-0.7.0/DSAIDE/man/simulate_evolution.Rd | 34 - DSAIDE-0.7.0/DSAIDE/man/simulate_heterogeneity.Rd | 23 DSAIDE-0.7.0/DSAIDE/man/simulate_idcharacteristics.Rd | 28 DSAIDE-0.7.0/DSAIDE/man/simulate_idcontrol.Rd | 30 DSAIDE-0.7.0/DSAIDE/man/simulate_idpatterns.Rd | 20 DSAIDE-0.7.0/DSAIDE/man/simulate_introduction.Rd | 34 - DSAIDE-0.7.0/DSAIDE/man/simulate_multipathogen.Rd | 23 DSAIDE-0.7.0/DSAIDE/man/simulate_reproductivenumber.Rd | 19 DSAIDE-0.7.0/DSAIDE/man/simulate_stochastic_SEIR.Rd |only DSAIDE-0.7.0/DSAIDE/man/simulate_stochastic_SIR.Rd |only DSAIDE-0.7.0/DSAIDE/man/simulate_vectortransmission.Rd | 18 DSAIDE-0.7.0/DSAIDE/tests |only DSAIDE-0.7.0/DSAIDE/vignettes/DSAIDE.Rmd | 84 +- 124 files changed, 2133 insertions(+), 1274 deletions(-)
Title: Penalized Matrix-Normal Linear Discriminant Analysis
Description: Fits the penalized matrix-normal model to be used for linear discriminant analysis with matrix-valued predictors. For a description of the method, see Molstad and Rothman (2018) <doi:10.1080/10618600.2018.1476249>.
Author: Aaron J. Molstad [aut, cre]
Maintainer: Aaron J. Molstad <amolstad@fredhutch.org>
Diff between MatrixLDA versions 0.1 dated 2016-10-29 and 0.2 dated 2018-08-06
DESCRIPTION | 19 ++-- MD5 | 27 +++--- NAMESPACE | 5 - R/GENERAL_ITER.R | 159 ++++++++++++++++----------------------- R/MN_CLASSIFICATION.R | 31 +++---- R/MN_MLE.R | 28 ++---- R/MatLDA.R | 157 ++++++++++++++++++-------------------- R/MatLDA_Grid.R | 174 ++++++++++++++++++------------------------- R/SAMPLES.R | 26 ++---- man/MN_MLE.Rd | 20 +++- man/MatLDA.Rd | 32 ++++--- man/MatLDA_Grid.Rd | 22 +++-- man/PredictMN.Rd | 26 ++++-- src/M_Update_Rcpp.cpp | 9 -- src/registerDynamicSymbols.c |only 15 files changed, 350 insertions(+), 385 deletions(-)
Title: Analysis and Visualization of Circular Data
Description: Tools for analyzing and visualizing circular data, including a
generalization of the bootstrapped structural summary method from
Zimmermann & Wright (2017) <doi:10.1177/1073191115621795> and functions for
creating publication-ready tables and figures from the results. Future
versions will include tools for circular fit and reliability analyses, as
well as greatly enhanced visualization methods.
Author: Jeffrey Girard [aut, cre] (<https://orcid.org/0000-0002-7359-3746>),
Johannes Zimmermann [aut] (<https://orcid.org/0000-0001-6975-2356>),
Aidan Wright [aut] (<https://orcid.org/0000-0002-2369-0601>)
Maintainer: Jeffrey Girard <me@jmgirard.com>
Diff between circumplex versions 0.1.1 dated 2018-07-31 and 0.1.2 dated 2018-08-06
DESCRIPTION | 8 MD5 | 36 ++-- NEWS.md | 20 ++ R/ssm_visualization.R | 49 +----- R/zzz.R | 2 README.md | 33 ++-- inst/doc/intermediate-ssm-analysis.R | 46 ++--- inst/doc/intermediate-ssm-analysis.Rmd | 213 +++++--------------------- inst/doc/intermediate-ssm-analysis.html | 230 ++++++++++++++-------------- inst/doc/introduction-to-ssm-analysis.R | 40 ++-- inst/doc/introduction-to-ssm-analysis.Rmd | 233 ++++++----------------------- inst/doc/introduction-to-ssm-analysis.html | 69 ++++---- man/figures/README-plot-1.png |binary man/html_render.Rd | 9 - man/ssm_append.Rd | 9 - man/ssm_table.Rd | 10 - src/circular.cpp | 2 vignettes/intermediate-ssm-analysis.Rmd | 213 +++++--------------------- vignettes/introduction-to-ssm-analysis.Rmd | 233 ++++++----------------------- 19 files changed, 470 insertions(+), 985 deletions(-)
Title: Extract Genotypes from a PLINK .bed File
Description: A matrix-like data structure that allows for efficient,
convenient, and scalable subsetting of binary genotype/phenotype files
generated by PLINK (<https://www.cog-genomics.org/plink2>), the whole
genome association analysis toolset, without loading the entire file into
memory.
Author: Alexander Grueneberg [aut, cre],
Lian Lian [ctb],
Gustavo de los Campos [ctb]
Maintainer: Alexander Grueneberg <alexander.grueneberg@googlemail.com>
Diff between BEDMatrix versions 1.4.0 dated 2017-05-07 and 1.4.1 dated 2018-08-06
DESCRIPTION | 11 +++++----- MD5 | 16 +++++++-------- NEWS.md | 10 +++++++++ R/BEDMatrix.R | 31 +++++++++++++++--------------- README.md | 40 +++++++++++++++++++++++---------------- man/BEDMatrix-class.Rd | 15 +++++--------- src/BEDMatrix.cpp | 41 ++++++++++++++++++---------------------- src/init.c | 22 ++++++++------------- tests/testthat/test-BEDMatrix.R | 12 +++++------ 9 files changed, 104 insertions(+), 94 deletions(-)
Title: Column-Linked and Row-Linked Matrices
Description: A class that links matrix-like objects (nodes) by rows or by
columns while behaving similarly to a base R matrix. Very large matrices
are supported if the nodes are memory-mapped objects.
Author: Gustavo de los Campos [aut],
Alexander Grueneberg [aut, cre]
Maintainer: Alexander Grueneberg <alexander.grueneberg@googlemail.com>
Diff between LinkedMatrix versions 1.3.0 dated 2018-01-09 and 1.3.1 dated 2018-08-06
DESCRIPTION | 13 +++++++------ MD5 | 18 +++++++++--------- NEWS.md | 13 +++++++++++++ R/ColumnLinkedMatrix.R | 21 +++++++++++---------- R/RowLinkedMatrix.R | 21 +++++++++++---------- R/package.R | 5 ----- README.md | 3 ++- man/ColumnLinkedMatrix-class.Rd | 5 +---- man/initialize-ColumnLinkedMatrix-method.Rd | 4 +--- tests/testthat/test-LinkedMatrix.R | 3 ++- 10 files changed, 57 insertions(+), 49 deletions(-)
Title: Implementation Helper for [ and [<- Of Custom Matrix-Like Types
Description: Functions to help implement the extraction / subsetting / indexing
function [ and replacement function [<- of custom matrix-like types (based
on S3, S4, etc.), modeled as closely to the base matrix class as possible
(with tests to prove it).
Author: Alexander Grueneberg [aut, cre]
Maintainer: Alexander Grueneberg <alexander.grueneberg@googlemail.com>
Diff between crochet versions 2.0.1 dated 2018-01-08 and 2.1.0 dated 2018-08-06
DESCRIPTION | 11 ++++++----- MD5 | 16 +++++++++------- NAMESPACE | 1 + NEWS.md | 5 +++++ R/crochet.R | 19 ++++++++++++++++++- README.md | 3 ++- man/convertIndex.Rd |only man/examples/convertIndex.R |only man/extract.Rd | 3 --- man/replace.Rd | 3 --- 10 files changed, 41 insertions(+), 20 deletions(-)
Title: Mixed-Frequency GARCH Models
Description: Estimating GARCH-MIDAS (MIxed-DAta-Sampling) models (Engle, Ghysels, Sohn, 2013, <doi:10.1162/REST_a_00300>) and related statistical inference, accompanying the paper "Two are better than one: volatility forecasting using multiplicative component GARCH models" by Conrad and Kleen (2018, <doi:10.2139/ssrn.2752354>). The GARCH-MIDAS model decomposes the conditional variance of (daily) stock returns into a short- and long-term component, where the latter may depend on an exogenous covariate sampled at a lower frequency.
Author: Onno Kleen [aut, cre]
Maintainer: Onno Kleen <r@onnokleen.de>
Diff between mfGARCH versions 0.1.5 dated 2018-06-28 and 0.1.7 dated 2018-08-06
DESCRIPTION | 10 LICENSE | 2 MD5 | 23 +- NAMESPACE | 3 NEWS.md | 9 R/fit_mfgarch.R | 426 ++++++++++++++++++++++++++------------ R/simulate_mfgarch.R | 21 + R/simulate_mfgarch_diffusion.R | 26 -- data/df_mfgarch.rda |binary inst |only man/fit_mfgarch.Rd | 4 man/simulate_mfgarch.Rd | 14 - man/simulate_mfgarch_diffusion.Rd | 8 13 files changed, 357 insertions(+), 189 deletions(-)
Title: Statistical Inference for Systems of Ordinary Differential
Equations using Separable Integral-Matching
Description: Implements statistical inference for systems of ordinary differential equations,
that uses the integral-matching criterion and takes advantage of the separability of parameters,
in order to obtain initial parameter estimates for nonlinear least squares optimization.
Dattner & Yaari (2018) <arXiv:1807.04202>.
Dattner et al. (2017) <doi:10.1098/rsif.2016.0525>.
Dattner & Klaassen (2015) <doi:10.1214/15-EJS1053>.
Author: Itai Dattner [aut, cre],
Rami Yaari [aut]
Maintainer: Itai Dattner <idattner@stat.haifa.ac.il>
Diff between simode versions 1.0.1 dated 2018-08-02 and 1.0.2 dated 2018-08-06
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/simode.R | 6 +++--- R/simode_multi.R | 2 +- R/utils.R | 2 +- demo/LVMCEx.R | 2 +- 6 files changed, 14 insertions(+), 14 deletions(-)
Title: Ordinal Data Clustering, Co-Clustering and Classification
Description: Ordinal data classification, clustering and co-clustering using model-based approach with the Bos distribution for ordinal data (Christophe Biernacki and Julien Jacques (2016) <doi:10.1007/s11222-015-9585-2>).
Author: Margot Selosse, Julien Jacques, Christophe Biernacki
Maintainer: Margot Selosse <margot.selosse@gmail.com>
Diff between ordinalClust versions 1.3 dated 2018-07-31 and 1.3.1 dated 2018-08-06
ordinalClust-1.3.1/ordinalClust/DESCRIPTION | 10 - ordinalClust-1.3.1/ordinalClust/MD5 | 50 ++--- ordinalClust-1.3.1/ordinalClust/R/classesDef.R | 30 +-- ordinalClust-1.3.1/ordinalClust/R/methodsDef.R |only ordinalClust-1.3.1/ordinalClust/data/dataqol.RData |binary ordinalClust-1.3.1/ordinalClust/data/dataqol.classif.RData |binary ordinalClust-1.3.1/ordinalClust/inst/doc/ordinalClust.R | 5 ordinalClust-1.3.1/ordinalClust/inst/doc/ordinalClust.Rmd | 5 ordinalClust-1.3.1/ordinalClust/inst/doc/ordinalClust.html | 10 - ordinalClust-1.3.1/ordinalClust/man/bosclassif.Rd | 2 ordinalClust-1.3.1/ordinalClust/man/bosclust.Rd | 2 ordinalClust-1.3.1/ordinalClust/man/boscoclust.Rd | 2 ordinalClust-1.3.1/ordinalClust/src/Bos.cpp | 32 +-- ordinalClust-1.3.1/ordinalClust/src/BosPredict.cpp | 2 ordinalClust-1.3.1/ordinalClust/src/ClassificationContext.cpp | 74 +++---- ordinalClust-1.3.1/ordinalClust/src/ClassificationContext.h | 4 ordinalClust-1.3.1/ordinalClust/src/ClassificationMContext.cpp | 56 ++--- ordinalClust-1.3.1/ordinalClust/src/ClassificationMContext.h | 4 ordinalClust-1.3.1/ordinalClust/src/ClusteringContext.cpp | 98 +++++---- ordinalClust-1.3.1/ordinalClust/src/ClusteringContext.h | 4 ordinalClust-1.3.1/ordinalClust/src/CoClusteringContext.cpp | 99 +++++----- ordinalClust-1.3.1/ordinalClust/src/CoClusteringContext.h | 4 ordinalClust-1.3.1/ordinalClust/src/Distribution.cpp | 26 +- ordinalClust-1.3.1/ordinalClust/src/Distribution.h | 4 ordinalClust-1.3.1/ordinalClust/src/ordinalClust.cpp | 2 ordinalClust-1.3.1/ordinalClust/vignettes/ordinalClust.Rmd | 5 ordinalClust-1.3/ordinalClust/R/methods.R |only 27 files changed, 267 insertions(+), 263 deletions(-)
Title: Greenhouse Gas Flux Calculation from Chamber Measurements
Description: Functions for greenhouse gas flux calculation from chamber
measurements.
Author: Roland Fuss [aut, cre],
Roman Hueppi [ctb],
Asger R. Pedersen [cph] (for code copied from the not-exported
HMR:::.HMR.fit1 function (version 0.3.1))
Maintainer: Roland Fuss <roland.fuss@thuenen.de>
Diff between gasfluxes versions 0.2-1 dated 2017-03-30 and 0.4 dated 2018-08-06
DESCRIPTION | 18 +- MD5 | 42 ++++-- NAMESPACE | 2 NEWS.md | 13 +- R/HMR.R | 5 R/NDFE.R | 5 R/gasfluxes.R | 209 +++++++++++++++++++++++++++------ R/linear.R | 21 ++- build |only inst |only man/HMR.fit.Rd | 4 man/NDFE.fit.Rd | 4 man/gasfluxes.Rd | 26 +--- man/lin.fit.Rd | 4 man/rlin.fit.Rd | 3 man/selectfluxes.Rd |only tests/testthat/test_fitting.R | 10 - tests/testthat/test_gasfluxes.R | 248 +++++++++++++++++++++++++++++----------- vignettes |only 19 files changed, 447 insertions(+), 167 deletions(-)
Title: 32-Bit Floats
Description: R comes with a suite of utilities for linear algebra with "numeric"
(double precision) vectors/matrices. However, sometimes single precision (or
less!) is more than enough for a particular task. This package extends R's
linear algebra facilities to include 32-bit float (single precision) data.
Float vectors/matrices have half the precision of their "numeric"-type
counterparts but are generally faster to numerically operate on, for a
performance vs accuracy trade-off. The internal representation is an S4
class, which allows us to keep the syntax identical to that of base R's.
Interaction between floats and base types for binary operators is generally
possible; in these cases, type promotion always defaults to the higher
precision. The package ships with copies of the single precision 'BLAS' and
'LAPACK', which are automatically built in the event they are not available
on the system.
Author: Drew Schmidt [aut, cre, cph],
Wei-Chen Chen [ctb] (win32 fixes),
Dmitriy Selivanov [ctb] (improvements in external package linking),
ORNL [cph]
Maintainer: Drew Schmidt <wrathematics@gmail.com>
Diff between float versions 0.1-1 dated 2017-11-30 and 0.2-0 dated 2018-08-06
ChangeLog | 14 DESCRIPTION | 27 - LICENSE | 7 MD5 | 85 ++--- NAMESPACE | 17 - R/01-constructor.r | 48 ++ R/02-flags.r |only R/bracket.r | 54 ++- R/converters.r | 42 ++ R/dims.r | 11 R/float-package.r | 21 - R/names.r |only R/print.r | 2 R/rand.r | 16 R/rep.r |only R/str.r | 14 R/zzz.r | 20 + README.md | 23 + cleanup | 2 configure | 706 +++++++++++++++++++++++++++++++++++++++++-- configure.ac | 74 +++- inst/CITATION | 4 inst/doc/float.Rnw | 63 ++- inst/doc/float.pdf |binary inst/include/float/float32.h | 38 +- inst/include/float/slapack.h | 18 - man/converters.Rd | 16 man/float-package.Rd | 17 - man/float.Rd |only man/names.Rd |only man/rand.Rd | 2 man/rep.Rd |only src/Makevars.in | 17 - src/NA.c | 70 +++- src/NA.h | 31 - src/Rfloat.h | 5 src/converters.c | 2 src/eigen.c | 4 src/float_native.c | 6 src/math.c | 2 src/qr.c | 16 src/scale.c | 10 src/solve.c | 4 src/svd.c | 6 src/sweep.c | 7 tests/rep.r |only vignettes/float.Rnw | 63 ++- 47 files changed, 1334 insertions(+), 250 deletions(-)
Title: Manage Time Series for Official Statistics with R and PostgreSQL
Description: Archive and manage times series data from official statistics. The 'timeseriesdb' package was designed to manage a large catalog of time series from official statistics which are typically published on a monthly, quarterly or yearly basis. Thus timeseriesdb is optimized to handle updates caused by data revision as well as elaborate, multi-lingual meta information.
Author: "Matthias Bannert <bannert@kof.ethz.ch> [aut, cre]"
Maintainer: 'Matthias Bannert' <bannert@kof.ethz.ch>
Diff between timeseriesdb versions 0.4 dated 2018-07-19 and 0.4.1 dated 2018-08-06
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/createHstore.R | 20 ++++++++++++++++++++ R/updateMetaInformation.R | 9 +-------- inst/doc/timeseriesdb.html | 4 ++-- 5 files changed, 30 insertions(+), 17 deletions(-)
Title: RF Variable Importance for Arbitrary Measures
Description: Computes the random forest variable importance (VIMP) for the conditional inference random forest (cforest) of the 'party' package. Includes a function (varImp) that computes the VIMP for arbitrary measures from the 'measures' package. For calculating the VIMP regarding the measures accuracy and AUC two extra functions exist (varImpACC and varImpAUC).
Author: Philipp Probst [aut, cre],
Silke Janitza [ctb]
Maintainer: Philipp Probst <philipp_probst@gmx.de>
Diff between varImp versions 0.1 dated 2018-07-13 and 0.2 dated 2018-08-06
DESCRIPTION | 8 +-- MD5 | 20 ++++----- NAMESPACE | 1 R/helpers.R | 82 ++++++++++++++++++------------------- R/varImp.R | 98 ++++++++++++++++++++++++++++++--------------- R/varImpACC.R | 4 - R/varImpAUC.R | 76 +++++++++++++++++----------------- man/varImp.Rd | 9 +++- man/varImpACC.Rd | 2 man/varImpAUC.Rd | 2 tests/testthat/test_base.R | 18 +++++--- 11 files changed, 184 insertions(+), 136 deletions(-)
Title: A Basic Set of Functions for Compositional Data Analysis
Description: A minimum set of functions to perform compositional data analysis
using the log-ratio approach introduced by John Aitchison (1982) <http://www.jstor.org/stable/2345821>. Main functions
have been implemented in c++ for better performance.
Author: Marc Comas-Cufí [aut, cre]
Maintainer: Marc Comas-Cufí <mcomas@imae.udg.edu>
Diff between coda.base versions 0.1.9 dated 2018-05-09 and 0.1.10 dated 2018-08-06
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 9 +++++++++ R/coordinates.R | 31 +++++++++++++++++++++++-------- man/coordinates.Rd | 4 ++-- 5 files changed, 42 insertions(+), 18 deletions(-)
Title: Item Maker
Description: This is an Automatic Item Generator for Psychological Assessment. Items created with the 'IMak' package should not be used in applied settings as part of the working protocol without ensuring first that the items meet the required psychometric quality standards (see Blum & Holling, 2018) <DOI:10.3389/fpsyg.2018.01286>.
Author: Diego Blum [aut, cre]
Maintainer: Diego Blum <blumworx@gmail.com>
Diff between IMak versions 1.2.0 dated 2018-07-04 and 1.2.1 dated 2018-08-06
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ R/buildfa.R | 2 +- R/plotfa.R | 2 +- man/IMak.Rd | 8 ++++---- man/build_fa.Rd | 2 +- man/plot_fa.Rd | 2 +- 7 files changed, 19 insertions(+), 19 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-05 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-05 0.1.0
Title: VAR Modelling
Description: Estimation, lag selection, diagnostic testing, forecasting, causality analysis, forecast error variance decomposition and impulse response functions of VAR models and estimation of SVAR and SVEC models.
Author: Bernhard Pfaff [aut, cre],
Matthieu Stigler [ctb]
Maintainer: Bernhard Pfaff <bernhard@pfaffikus.de>
Diff between vars versions 1.5-2 dated 2013-07-22 and 1.5-3 dated 2018-08-06
DESCRIPTION | 12 ++++++------ MD5 | 17 +++++++++-------- NAMESPACE | 44 ++++++++++++++++++++++++++++---------------- R/internal.R | 4 ++-- R/stability.R | 19 +++++++++++++++---- build |only data/Canada.RData |binary inst/doc/vars.pdf |binary man/stability.Rd | 15 ++++++++++----- vignettes/Figures/fig-2.pdf |binary 10 files changed, 70 insertions(+), 41 deletions(-)
Title: Non-Homogeneous Markov Switching Autoregressive Models
Description: Calibration, simulation, validation of (non-)homogeneous Markov switching autoregressive models with Gaussian or von Mises innovations. Penalization methods are implemented for Markov Switching Vector Autoregressive Models of order 1 only. Most functions of the package handle missing values.
Author: Valerie Monbet
Maintainer: Valerie Monbet <valerie.monbet@gmail.com>
Diff between NHMSAR versions 1.10 dated 2018-07-24 and 1.11 dated 2018-08-06
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/prediction.MSAR.R | 2 +- man/prediction.MSAR.Rd | 4 ++-- 4 files changed, 10 insertions(+), 10 deletions(-)
Title: Toolbox for Model Building and Forecasting
Description: Implements functions and instruments for regression model building and its
application to forecasting. The main scope of the package is in variables selection
and models specification for cases of time series data. This includes promotional
modelling, selection between different dynamic regressions with non-standard
distributions of errors, selection based on cross validation, solutions to the fat
regression model problem and more. Models developed in the package are tailored
specifically for forecasting purposes. So as a results there are several methods
that allow producing forecasts from these models and visualising them.
Author: Ivan Svetunkov [aut, cre] (Lecturer at Centre for Marketing Analytics
and Forecasting, Lancaster University, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between greybox versions 0.2.2 dated 2018-05-25 and 0.3.0 dated 2018-08-06
DESCRIPTION | 14 - MD5 | 54 +++-- NAMESPACE | 50 ++++ NEWS | 30 ++ R/alm.R |only R/determination.R | 18 + R/fnorm.R |only R/laplace.R | 8 R/lmCombine.R | 2 R/lmDynamic.R |only R/methods.R | 450 ++++++++++++++++++++++++++++++++++++++++++-- R/nemenyi.R |only R/rmc.R |only R/ro.R | 3 README.md | 39 ++- build/partial.rdb |binary inst/doc/greybox.R | 28 ++ inst/doc/greybox.Rmd | 58 +++++ inst/doc/greybox.html | 171 +++++++++++++++- inst/doc/ro.R | 4 inst/doc/ro.Rmd | 5 inst/doc/ro.html | 23 +- man/alm.Rd |only man/errorType.Rd |only man/fnorm-distribution.Rd |only man/laplace-distribution.Rd | 8 man/lmDynamic.Rd |only man/pointIC.Rd |only man/pointLik.Rd |only man/reexports.Rd | 4 man/rmc.Rd |only man/ro.Rd | 1 vignettes/greybox.Rmd | 58 +++++ vignettes/ro.Rmd | 5 34 files changed, 914 insertions(+), 119 deletions(-)
Title: The Free Group
Description: Provides functionality for manipulating elements of the free group (juxtaposition is represented by a plus) including inversion, multiplication by a scalar, group-theoretic power operation, and Tietze forms. The package is fully vectorized.
Author: Robin K. S. Hankin
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between freegroup versions 1.0 dated 2018-05-16 and 1.0-2 dated 2018-08-06
DESCRIPTION | 8 MD5 | 37 +- NAMESPACE | 2 R/freegroup.R | 86 +++++- R/freeops.R | 6 build/partial.rdb |only build/vignette.rds |binary inst/dehn.R |only inst/doc/freevig.html | 611 ++++++++++++++++++++--------------------------- man/Extract.Rd | 15 - man/abc.Rd | 2 man/alpha.Rd | 17 + man/backwards.Rd |only man/char_to_free.Rd | 27 +- man/free.Rd | 7 man/freegroup-package.Rd |only man/getlet.Rd |only man/identity.Rd | 21 + man/keep.Rd |only man/print.Rd | 29 +- man/reduce.Rd | 36 ++ man/sum.Rd | 20 + tests |only 23 files changed, 517 insertions(+), 407 deletions(-)
Title: Tools for CM SAF NetCDF Data
Description: The Satellite Application Facility on Climate Monitoring (CM SAF)
is a ground segment of the European Organization for the Exploitation of
Meteorological Satellites (EUMETSAT) and one of EUMETSATs Satellite Application
Facilities. The CM SAF contributes to the sustainable observing of the climate
system by providing essential climate variables related to the energy and water
cycle of the atmosphere (<http://www.cmsaf.eu>). It is a joint cooperation of seven
National Meteorological and Hydrological Services.
The 'cmsaf' R-package provides a collection of R-operators for the analysis and
manipulation of CM SAF NetCDF formatted data. The 'cmsaf' R-package is tested
for CM SAF NetCDF data, which are structured in three-dimensional arrays
(longitude, latitude, time) on a rectangular grid. Layered CM SAF data have to
be converted with the provided levbox_mergetime() function. The 'cmsaf' R-package
operators have only minor checks for deviations from the recommended data structure,
and give only few specific error messages.
Scripts for an easy application of the 'cmsaf' package operators and the preparation
and visualization of CM SAF NetCDF data are provided at the CM SAF webpage
(<http://www.cmsaf.eu/EN/Products/Tools/Tools_node.html>).
Author: Steffen Kothe <Steffen.Kothe@dwd.de>
Maintainer: Steffen Kothe <Steffen.Kothe@dwd.de>
Diff between cmsaf versions 1.9.3 dated 2018-08-03 and 1.9.4 dated 2018-08-06
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/ydaymean.R | 27 ++++++++++++++------------- man/cmsaf-package.Rd | 4 ++-- 4 files changed, 23 insertions(+), 22 deletions(-)
Title: Descriptive mAchine Learning EXplanations
Description: Machine Learning (ML) models are widely used and have various applications in classification
or regression. Models created with boosting, bagging, stacking or similar techniques are often
used due to their high performance, but such black-box models usually lack of interpretability.
DALEX package contains various explainers that help to understand the link between input variables and model output.
The single_variable() explainer extracts conditional response of a model as a function of a single selected variable.
It is a wrapper over packages 'pdp' and 'ALEPlot'.
The single_prediction() explainer attributes parts of a model prediction to particular variables used in the model.
It is a wrapper over 'breakDown' package.
The variable_dropout() explainer calculates variable importance scores based on variable shuffling.
All these explainers can be plotted with generic plot() function and compared across different models.
Author: Przemyslaw Biecek [aut, cre]
Maintainer: Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Diff between DALEX versions 0.2.3 dated 2018-06-13 and 0.2.4 dated 2018-08-06
DESCRIPTION | 6 +++--- MD5 | 13 +++++++++---- NEWS.md | 5 +++++ R/HR.R |only R/plot_model_performance.R | 19 ++++++++++++++++--- data/HR.rda |only data/HRTest.rda |only inst |only man/HR.Rd |only man/plot.model_performance_explainer.Rd | 8 ++++++-- 10 files changed, 39 insertions(+), 12 deletions(-)
Title: Plot 'rpart' Models: An Enhanced Version of 'plot.rpart'
Description: Plot 'rpart' models. Extends plot.rpart() and text.rpart()
in the 'rpart' package.
Author: Stephen Milborrow
Maintainer: Stephen Milborrow <milbo@sonic.net>
Diff between rpart.plot versions 3.0.2 dated 2018-07-26 and 3.0.3 dated 2018-08-06
DESCRIPTION | 6 MD5 | 55 - NAMESPACE | 8 NEWS | 13 R/lib.R | 5 R/palette.R | 70 +- R/rpart.model.frame.R | 5 R/rpart.predict.R |only R/rpart.rules.R | 144 +++- inst/doc/prp.pdf |binary inst/slowtests/make.bat | 2 inst/slowtests/rpart.report.R | 104 +-- inst/slowtests/rpart.report.Rout.save | 281 ++++++-- inst/slowtests/test.na.R | 3 inst/slowtests/test.na.Rout.save | 19 inst/slowtests/test.palette.R | 8 inst/slowtests/test.palette.Rout.save | 50 - inst/slowtests/test.prp.Rout.save | 10 inst/slowtests/test.rpart.plot.R | 2 inst/slowtests/test.rpart.plot.Rout.save | 21 inst/slowtests/test.rpart.rules.R | 224 ++++++ inst/slowtests/test.rpart.rules.Rout.save | 992 +++++++++++++++++++++++++++--- inst/slowtests/usersplits.R |only inst/slowtests/usersplits.Rout.save |only inst/slowtests/usersplits.bat |only man/prp.Rd | 2 man/rpart.plot.Rd | 2 man/rpart.plot.version1.Rd | 2 man/rpart.predict.Rd |only man/rpart.rules.Rd | 3 man/show.prp.palettes.Rd | 3 31 files changed, 1698 insertions(+), 336 deletions(-)
Title: Efficient Mixed Model Analysis of Count Data in Large-Scale
Genomic Sequencing Studies
Description: An efficient tool designed for differential analysis of large-scale RNA sequencing (RNAseq) data and Bisulfite sequencing (BSseq) data in the presence of individual relatedness and population structure. 'PQLseq' first fits a Generalized Linear Mixed Model (GLMM) with adjusted covariates, predictor of interest and random effects to account for population structure and individual relatedness, and then performs Wald tests for each gene in RNAseq or site in BSseq.
Author: Shiquan Sun, Jiaqiang Zhu, Xiang Zhou
Maintainer: Shiquan Sun <shiquans@umich.edu>
Diff between PQLseq versions 1.0 dated 2018-06-10 and 1.1 dated 2018-08-06
DESCRIPTION | 8 +++---- MD5 | 12 +++++----- R/PQLseq.R | 59 ++++++++++++++++++++++++++++++++---------------------- build/partial.rdb |binary inst/COPYRIGHTS | 2 - src/Makevars | 12 +++++++++- src/Makevars.win | 12 +++++++++- 7 files changed, 66 insertions(+), 39 deletions(-)