Title: SPatially aUTomatic deNoising for Ims toolKit
Description: A set of tools for the peak filtering of mass spectrometry
imaging data (MSI or IMS) based on spatial distribution of signal. Given a
region-of-interest (ROI), representing the spatial region where the informative signal is expected to be
localized, a series of filters determine which peak signals are characterized by
an implausible spatial distribution. The filters reduce the dataset dimensionality
and increase its information vs noise ratio, improving the quality of the
unsupervised analysis results, reducing data dimensionality and simplifying
the chemical interpretation.
Author: Paolo Inglese [aut, cre],
Goncalo Correia [aut, ctb]
Maintainer: Paolo Inglese <p.inglese14@imperial.ac.uk>
Diff between SPUTNIK versions 1.0.3.1 dated 2018-07-20 and 1.0.3.2 dated 2018-08-15
DESCRIPTION | 6 - MD5 | 8 - R/filter_count.R | 278 ++++++++++++++++++++++++-------------------------- R/graph_funcs.R | 4 R/msi.dataset_funcs.R | 215 +++++++++++++++++++------------------- 5 files changed, 254 insertions(+), 257 deletions(-)
Title: Handy File and String Manipulation
Description: Convenient functions for moving files, deleting directories,
and a variety of string operations that facilitate manipulating files
and extracting information from strings.
Author: Rory Nolan [aut, cre, cph] (<https://orcid.org/0000-0002-5239-4043>),
Sergi Padilla-Parra [ths] (<https://orcid.org/0000-0002-8010-9481>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between filesstrings versions 2.5.0 dated 2018-06-29 and 2.6.0 dated 2018-08-15
filesstrings-2.5.0/filesstrings/R/strings.R |only filesstrings-2.6.0/filesstrings/DESCRIPTION | 8 filesstrings-2.6.0/filesstrings/MD5 | 108 +++- filesstrings-2.6.0/filesstrings/NAMESPACE | 9 filesstrings-2.6.0/filesstrings/NEWS.md | 9 filesstrings-2.6.0/filesstrings/R/RcppExports.R | 104 ++++ filesstrings-2.6.0/filesstrings/R/all-equal.R |only filesstrings-2.6.0/filesstrings/R/arg-match.R |only filesstrings-2.6.0/filesstrings/R/can-be-num.R |only filesstrings-2.6.0/filesstrings/R/count-matches.R |only filesstrings-2.6.0/filesstrings/R/files.R | 20 filesstrings-2.6.0/filesstrings/R/filesstrings-deprecated.R |only filesstrings-2.6.0/filesstrings/R/str-after.R |only filesstrings-2.6.0/filesstrings/R/str-before.R |only filesstrings-2.6.0/filesstrings/R/str-currency.R |only filesstrings-2.6.0/filesstrings/R/str-elem.R |only filesstrings-2.6.0/filesstrings/R/str-extract-non-nums.R |only filesstrings-2.6.0/filesstrings/R/str-extract-nums.R |only filesstrings-2.6.0/filesstrings/R/str-give-ext.R |only filesstrings-2.6.0/filesstrings/R/str-locate.R |only filesstrings-2.6.0/filesstrings/R/str-nice-nums.R |only filesstrings-2.6.0/filesstrings/R/str-num-after.R |only filesstrings-2.6.0/filesstrings/R/str-num-before.R |only filesstrings-2.6.0/filesstrings/R/str-pad.R |only filesstrings-2.6.0/filesstrings/R/str-put-in-pos.R |only filesstrings-2.6.0/filesstrings/R/str-remove.R |only filesstrings-2.6.0/filesstrings/R/str-singleize.R |only filesstrings-2.6.0/filesstrings/R/str-split-by-nums.R |only filesstrings-2.6.0/filesstrings/R/str-split.R |only filesstrings-2.6.0/filesstrings/R/str-to-vec.R |only filesstrings-2.6.0/filesstrings/R/str-trim.R |only filesstrings-2.6.0/filesstrings/R/utils.R | 220 +-------- filesstrings-2.6.0/filesstrings/build/partial.rdb |binary filesstrings-2.6.0/filesstrings/build/vignette.rds |binary filesstrings-2.6.0/filesstrings/inst/doc/files.html | 4 filesstrings-2.6.0/filesstrings/inst/doc/strings.html | 4 filesstrings-2.6.0/filesstrings/man/all_equal.Rd | 2 filesstrings-2.6.0/filesstrings/man/before_last_dot.Rd | 2 filesstrings-2.6.0/filesstrings/man/can_be_numeric.Rd | 2 filesstrings-2.6.0/filesstrings/man/count_matches.Rd | 2 filesstrings-2.6.0/filesstrings/man/currency.Rd | 2 filesstrings-2.6.0/filesstrings/man/extend_char_vec.Rd | 2 filesstrings-2.6.0/filesstrings/man/extract_non_numerics.Rd |only filesstrings-2.6.0/filesstrings/man/extract_numbers.Rd | 43 - filesstrings-2.6.0/filesstrings/man/filesstrings.Rd | 1 filesstrings-2.6.0/filesstrings/man/give_ext.Rd | 2 filesstrings-2.6.0/filesstrings/man/locate_braces.Rd | 2 filesstrings-2.6.0/filesstrings/man/match_arg.Rd | 2 filesstrings-2.6.0/filesstrings/man/nice_nums.Rd | 2 filesstrings-2.6.0/filesstrings/man/nth_number_after_mth.Rd | 2 filesstrings-2.6.0/filesstrings/man/nth_number_before_mth.Rd |only filesstrings-2.6.0/filesstrings/man/put_in_pos.Rd | 2 filesstrings-2.6.0/filesstrings/man/remove_quoted.Rd | 2 filesstrings-2.6.0/filesstrings/man/singleize.Rd | 2 filesstrings-2.6.0/filesstrings/man/str_after_nth.Rd | 2 filesstrings-2.6.0/filesstrings/man/str_elem.Rd | 2 filesstrings-2.6.0/filesstrings/man/str_nth_instance_indices.Rd | 2 filesstrings-2.6.0/filesstrings/man/str_paste_elems.Rd | 2 filesstrings-2.6.0/filesstrings/man/str_split_by_nums.Rd | 2 filesstrings-2.6.0/filesstrings/man/str_split_camel_case.Rd | 2 filesstrings-2.6.0/filesstrings/man/str_to_vec.Rd | 2 filesstrings-2.6.0/filesstrings/man/str_with_patterns.Rd | 12 filesstrings-2.6.0/filesstrings/man/trim_anything.Rd | 2 filesstrings-2.6.0/filesstrings/src/RcppExports.cpp | 44 - filesstrings-2.6.0/filesstrings/src/strings.cpp | 223 +++++++--- filesstrings-2.6.0/filesstrings/tests/testthat/test-str-num-before-examples.R |only filesstrings-2.6.0/filesstrings/tests/testthat/test_RcppExports.R | 8 filesstrings-2.6.0/filesstrings/tests/testthat/test_strings.R | 9 filesstrings-2.6.0/filesstrings/tests/testthat/test_utils.R | 11 69 files changed, 484 insertions(+), 397 deletions(-)
Title: Tools for Distance Metrics
Description: Provides tools for constructing, manipulating and using distance metrics.
Author: Fredrik Savje [aut, cre]
Maintainer: Fredrik Savje <fredrik.savje@yale.edu>
Diff between distances versions 0.1.3 dated 2018-07-20 and 0.1.4 dated 2018-08-15
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 5 +++++ R/distances.R | 2 +- man/distances.Rd | 2 +- src/libann/Makefile | 4 +--- 6 files changed, 18 insertions(+), 15 deletions(-)
Title: Pacific Decadal Oscillation Index Data
Description: Monthly Pacific Decadal Oscillation (PDO) index
values from January 1900 to present.
Author: Joe Thorley [aut, cre],
Nathan Mantua [aut, dtc],
Steven R. Hare [aut, dtc]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between rpdo versions 0.2.3 dated 2018-01-31 and 0.2.4 dated 2018-08-15
rpdo-0.2.3/rpdo/R/package.R |only rpdo-0.2.3/rpdo/man/rpdo-package.Rd |only rpdo-0.2.4/rpdo/DESCRIPTION | 15 +++++++-------- rpdo-0.2.4/rpdo/MD5 | 14 +++++++------- rpdo-0.2.4/rpdo/NEWS.md | 4 ++++ rpdo-0.2.4/rpdo/R/rpdo-package.r |only rpdo-0.2.4/rpdo/README.md | 15 ++++++++------- rpdo-0.2.4/rpdo/data/pdo.rda |binary rpdo-0.2.4/rpdo/man/rpdo.Rd |only rpdo-0.2.4/rpdo/tools/README-unnamed-chunk-2-1.png |binary 10 files changed, 26 insertions(+), 22 deletions(-)
Title: Finding Rhythms Using Extended Circadian Harmonic Oscillators
(ECHO)
Description: Provides a function (echo_find()) designed to find rhythms
from data using extended harmonic oscillators. For more information,
see H. De los Santos et al. (2017) <doi:10.1145/3107411.3107420> .
Author: Hannah De los Santos [aut, cre],
Emily Collins [aut],
Jonathan Shewchuk [ctb],
E.F. Harding [ctb],
Kristin Bennett [aut],
Jennifer Hurley [aut]
Maintainer: Hannah De los Santos <delosh@rpi.edu>
Diff between echo.find versions 1.2.1 dated 2018-07-24 and 1.3.1 dated 2018-08-15
DESCRIPTION | 6 +- MD5 | 8 +-- R/echo_utils.R | 11 +--- inst/CITATION | 4 - inst/doc/echo-vignette.html | 98 ++++++++++++++++++++++---------------------- 5 files changed, 62 insertions(+), 65 deletions(-)
Title: Covariance Inference and Decompositions for Tensor Datasets
Description: A collection of functions for Kronecker structured covariance
estimation and testing under the array normal model. For estimation,
maximum likelihood and Bayesian equivariant estimation procedures are
implemented. For testing, a likelihood ratio testing procedure is
available. This package also contains additional functions for manipulating
and decomposing tensor data sets. This work was partially supported by NSF
grant DMS-1505136. Details of the methods are described in
Gerard and Hoff (2015) <doi:10.1016/j.jmva.2015.01.020> and
Gerard and Hoff (2016) <doi:10.1016/j.laa.2016.04.033>.
Author: David Gerard [aut, cre] (<https://orcid.org/0000-0001-9450-5023>),
Peter Hoff [aut]
Maintainer: David Gerard <gerard.1787@gmail.com>
Diff between tensr versions 1.0.0 dated 2016-02-03 and 1.0.1 dated 2018-08-15
DESCRIPTION | 27 - MD5 | 136 +++--- NAMESPACE | 76 +-- R/basic_tensor.R | 14 R/equi_mcmc.R | 39 - R/hoff_functions.R | 12 R/like_inference.R | 24 - R/loss_functions.R | 212 ++++----- R/post_equi_mcmc.R | 29 - R/starting_values.R | 281 ++++++------ R/tensor_decompositions.R | 123 +++-- R/tensr.R | 266 ++++++------ README.md |only build/vignette.rds |binary inst/CITATION |only inst/doc/equivariant_estimation.R | 360 ++++++++-------- inst/doc/equivariant_estimation.Rmd | 464 ++++++++++----------- inst/doc/equivariant_estimation.html | 772 ++++++++++++++++++++++------------- inst/doc/maximum_likelihood.R | 160 +++---- inst/doc/maximum_likelihood.Rmd | 234 +++++----- inst/doc/maximum_likelihood.html | 578 +++++++++++++++++--------- man/Kom.Rd | 89 +--- man/amprod.Rd | 105 ++-- man/anorm_cd.Rd | 107 ++-- man/arrIndices.Rd | 57 +- man/array_bic_aic.Rd | 153 +++--- man/atrans.Rd | 95 ++-- man/collapse_mode.Rd | 85 +-- man/convert_cov.Rd | 156 +++---- man/demean_tensor.Rd | 94 ++-- man/equi_mcmc.Rd | 162 +++---- man/fnorm.Rd | 69 +-- man/get_equi_bayes.Rd | 148 +++--- man/get_isvd.Rd | 139 +++--- man/holq.Rd | 289 ++++++------- man/hooi.Rd | 131 ++--- man/hosvd.Rd | 121 ++--- man/ihop.Rd | 181 ++++---- man/kendalltau.Rd | 63 +- man/ldan.Rd | 43 - man/listprod.Rd | 49 +- man/lq.Rd | 93 ++-- man/lrt_null_dist_dim_same.Rd | 233 +++++----- man/lrt_stat.Rd | 93 ++-- man/mat.Rd | 85 +-- man/mhalf.Rd | 59 +- man/mle_from_holq.Rd | 87 +-- man/multi_stein_loss.Rd | 118 ++--- man/multi_stein_loss_cov.Rd | 112 ++--- man/multiway_takemura.Rd | 142 +++--- man/polar.Rd | 85 +-- man/qr2.Rd | 75 +-- man/random_ortho.Rd | 69 +-- man/rmirror_wishart.Rd | 91 ++-- man/rmvnorm.Rd | 69 +-- man/rsan.Rd | 53 +- man/rwish.Rd | 63 +- man/sample_right_wishart.Rd | 88 +-- man/sample_sig.Rd | 98 ++-- man/start_ident.Rd | 73 +-- man/start_resids.Rd | 97 ++-- man/tensr.Rd | 280 ++++++------ man/topK.Rd | 65 +- man/tr.Rd | 59 +- man/trim.Rd | 59 +- man/tsum.Rd | 33 - man/zscores.Rd | 67 +-- tests |only vignettes/equivariant_estimation.Rmd | 464 ++++++++++----------- vignettes/maximum_likelihood.Rmd | 234 +++++----- 70 files changed, 4879 insertions(+), 4408 deletions(-)
Title: Normal Beta Prime Prior
Description: Implements Bayesian linear regression, variable selection, normal means estimation, and multiple hypothesis testing using the normal-beta prime prior, as introduced by Bai and Ghosh (2018) <arXiv:1807.02421> and Bai and Ghosh (2018) <arXiv:1807.06539>. Normal means estimation and multiple testing for the Dirichlet-Laplace <doi:10.1080/01621459.2014.960967> and horseshoe+ priors <doi:10.1214/16-BA1028> are also available in this package.
Author: Ray Bai, Malay Ghosh
Maintainer: Ray Bai <raybai07@ufl.edu>
Diff between NormalBetaPrime versions 1.0 dated 2018-07-22 and 1.1 dated 2018-08-15
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- R/dl.normalmeans.R | 4 ++-- R/hsplus.normalmeans.R | 8 ++++---- R/nbp.R | 6 ++---- R/nbp.normalmeans.R | 17 +++++------------ build/partial.rdb |binary man/dl.normalmeans.Rd | 4 ++-- man/eyedata.Rd | 6 +++--- man/hsplus.normalmeans.Rd | 2 +- man/nbp.normalmeans.Rd | 2 +- 11 files changed, 34 insertions(+), 43 deletions(-)
More information about NormalBetaPrime at CRAN
Permanent link
Title: Hierarchical Ensemble Methods for Directed Acyclic Graphs
Description: An implementation of Hierarchical Ensemble Methods for Directed Acyclic Graphs (DAGs). The 'HEMDAG' package can be used to enhance the predictions of virtually any flat learning methods, by taking into account the hierarchical nature of the classes of a bio-ontology. 'HEMDAG' is specifically designed for exploiting the hierarchical relationships of DAG-structured taxonomies, such as the Human Phenotype Ontology (HPO) or the Gene Ontology (GO), but it can be also safely applied to tree-structured taxonomies (as FunCat), since trees are DAGs. 'HEMDAG' scale nicely both in terms of the complexity of the taxonomy and in the cardinality of the examples. (Marco Notaro, Max Schubach, Peter N. Robinson and Giorgio Valentini (2017) <doi:10.1186/s12859-017-1854-y>).
Author: Marco Notaro [aut, cre] (<https://orcid.org/0000-0003-4309-2200>),
Alessandro Petrini [ctb] (<https://orcid.org/0000-0002-0587-1484>),
Giorgio Valentini [aut] (<https://orcid.org/0000-0002-5694-3919>)
Maintainer: Marco Notaro <marco.notaro@unimi.it>
Diff between HEMDAG versions 2.1.3 dated 2018-05-21 and 2.2.3 dated 2018-08-15
HEMDAG-2.1.3/HEMDAG/R/descens.R |only HEMDAG-2.1.3/HEMDAG/R/tpr.R |only HEMDAG-2.1.3/HEMDAG/man/DESCENS.Rd |only HEMDAG-2.1.3/HEMDAG/man/TPR-DAG.Rd |only HEMDAG-2.2.3/HEMDAG/CHANGELOG | 15 HEMDAG-2.2.3/HEMDAG/DESCRIPTION | 23 - HEMDAG-2.2.3/HEMDAG/MD5 | 40 +- HEMDAG-2.2.3/HEMDAG/NAMESPACE | 12 HEMDAG-2.2.3/HEMDAG/R/GPAV.R |only HEMDAG-2.2.3/HEMDAG/R/HEMDAG-defunct.R |only HEMDAG-2.2.3/HEMDAG/R/TPR-DAG.R | 315 +++++++++++++++----- HEMDAG-2.2.3/HEMDAG/R/graph.utility.R | 2 HEMDAG-2.2.3/HEMDAG/R/perf.meas.R | 2 HEMDAG-2.2.3/HEMDAG/R/pkg.import.R | 10 HEMDAG-2.2.3/HEMDAG/inst/doc/HEMDAG.pdf |binary HEMDAG-2.2.3/HEMDAG/man/Do.GPAV.Rd |only HEMDAG-2.2.3/HEMDAG/man/Do.GPAV.holdout.Rd |only HEMDAG-2.2.3/HEMDAG/man/GPAV.Rd |only HEMDAG-2.2.3/HEMDAG/man/GPAV.over.examples.Rd |only HEMDAG-2.2.3/HEMDAG/man/GPAV.parallel.Rd |only HEMDAG-2.2.3/HEMDAG/man/HEMDAG-defunct.Rd |only HEMDAG-2.2.3/HEMDAG/man/HEMDAG-package.Rd | 20 - HEMDAG-2.2.3/HEMDAG/man/TPR-DAG-cross-validation.Rd | 31 + HEMDAG-2.2.3/HEMDAG/man/TPR-DAG-holdout.Rd | 35 +- HEMDAG-2.2.3/HEMDAG/man/TPR-DAG-variants.Rd | 103 ++++++ HEMDAG-2.2.3/HEMDAG/man/adj.upper.tri.Rd |only HEMDAG-2.2.3/HEMDAG/src |only 27 files changed, 487 insertions(+), 121 deletions(-)
Title: Simplify the Creation of Choropleth Maps in R
Description: Choropleths are thematic maps where geographic regions, such as
states, are colored according to some metric, such as the number of people
who live in that state. This package simplifies this process by 1.
Providing ready-made functions for creating choropleths of common maps. 2.
Providing data and API connections to interesting data sources for making
choropleths. 3. Providing a framework for creating choropleths from
arbitrary shapefiles. 4. Overlaying those maps over reference maps from
Google Maps.
Author: Ari Lamstein [aut, cre],
Brian Johnson [ctb],
Trulia, Inc. [cph]
Maintainer: Ari Lamstein <ari@lamsteinconsulting.com>
Diff between choroplethr versions 3.6.2 dated 2018-06-21 and 3.6.3 dated 2018-08-15
DESCRIPTION | 22 ++++++++++++++-------- MD5 | 26 +++++++++++++------------- NAMESPACE | 1 - NEWS | 7 +++++++ R/admin1.R | 1 - R/admin1_region.R | 1 - R/choropleth.R | 8 +++----- R/country.R | 1 - R/county.R | 1 - R/state.R | 1 - R/tracts.R | 1 - man/county_choropleth_acs.Rd | 4 ++-- man/state_choropleth_acs.Rd | 4 ++-- man/tract_choropleth.Rd | 5 +++-- 14 files changed, 44 insertions(+), 39 deletions(-)
Title: Amend, Augment and Aid Analysis of John Snow's Cholera Map
Description: Amends errors, augments data and aids analysis of John Snow's map
of the 1854 London cholera outbreak.
Author: Peter Li [aut, cre]
Maintainer: Peter Li <lindbrook@gmail.com>
Diff between cholera versions 0.5.0 dated 2018-07-16 and 0.5.1 dated 2018-08-15
DESCRIPTION | 17 - MD5 | 223 ++++++++-------- NAMESPACE | 3 NEWS | 24 + R/addCases.R | 37 +- R/addEuclideanPath.R | 464 +++++++--------------------------- R/addKernelDensity.R | 33 +- R/addMilePosts.R | 10 R/addNeighborhood.R | 82 +++--- R/addPump.R | 64 +++- R/addSnow.R | 11 R/addVoronoi.R | 43 +-- R/addWalkingPath.R | 112 +++++--- R/addWhitehead.R | 12 R/caseLocator.R | 4 R/classifierAudit.R | 14 - R/data.R | 5 R/distanceTime.R | 4 R/euclidean.R | 35 +- R/euclideanDistance.R | 262 +++---------------- R/euclideanPath.R | 338 ++++++++++-------------- R/multiCore.R | 4 R/nearestPump.R | 20 - R/neighborhoodData.R | 2 R/pumpCase.R | 51 +-- R/pumpData.R | 6 R/pumpLocator.R | 10 R/segmentLength.R | 4 R/segmentLocator.R | 8 R/simulateFatalities.R | 8 R/snowColors.R | 6 R/snowMap.R | 71 ++--- R/snowNeighborhood.R | 21 - R/streetLength.R | 2 R/streetNameLocator.R | 10 R/streetNumberLocator.R | 16 - R/timeSeries.R | 26 + R/unitMeter.R | 8 R/unstack.R | 11 R/voronoi.R | 56 +--- R/walking.R | 77 +++-- R/walkingAuxillaryFunctions.R | 4 R/walkingDistance.R | 312 +++------------------- R/walkingPath.R | 156 ++++------- README.md | 15 - inst/doc/duplicate.missing.cases.Rmd | 2 inst/doc/duplicate.missing.cases.html | 6 inst/doc/kernel.density.Rmd | 4 inst/doc/kernel.density.html | 14 - inst/doc/pump.neighborhoods.Rmd | 16 - inst/doc/pump.neighborhoods.html | 22 - inst/doc/roads.Rmd | 12 inst/doc/roads.html | 16 - inst/doc/time.series.Rmd | 2 inst/doc/time.series.html | 8 inst/doc/unstacking.bars.Rmd | 15 - inst/doc/unstacking.bars.html | 18 - man/addBorder.Rd |only man/addCases.Rd | 23 - man/addEuclideanPath.Rd | 20 - man/addKernelDensity.Rd | 32 +- man/addMilePosts.Rd | 8 man/addNeighborhood.Rd | 23 - man/addPump.Rd | 14 - man/addRoads.Rd |only man/addSnow.Rd | 9 man/addVoronoi.Rd | 4 man/addWalkingPath.Rd | 17 - man/addWhitehead.Rd | 10 man/caseLocator.Rd | 4 man/classifierAudit.Rd | 6 man/distanceTime.Rd | 6 man/euclideanDistance.Rd | 12 man/euclideanPath.Rd | 10 man/fixFatalities.Rd | 2 man/mapRange.Rd |only man/nearestPump.Rd | 14 - man/neighborhoodEuclidean.Rd | 9 man/neighborhoodVoronoi.Rd | 14 - man/neighborhoodWalking.Rd | 21 - man/plot.classifier_audit.Rd | 4 man/plot.euclidean.Rd | 2 man/plot.euclidean_path.Rd | 4 man/plot.time_series.Rd | 14 - man/plot.voronoi.Rd | 8 man/plot.walking.Rd | 17 - man/plot.walking_path.Rd | 5 man/print.classifier_audit.Rd | 2 man/print.euclidean.Rd | 2 man/print.euclidean_path.Rd | 2 man/print.voronoi.Rd | 2 man/print.walking.Rd | 9 man/pumpCase.Rd | 13 man/pumpData.Rd | 6 man/pumpLocator.Rd | 4 man/segmentLocator.Rd | 8 man/sim.pump.case.Rd | 5 man/simulateFatalities.Rd | 8 man/snowColors.Rd | 2 man/snowMap.Rd | 7 man/snowNeighborhood.Rd | 2 man/streetNameLocator.Rd | 10 man/streetNumberLocator.Rd | 16 - man/timeSeries.Rd | 4 man/unitMeter.Rd | 4 man/unstackFatalities.Rd | 8 man/walkingDistance.Rd | 13 man/walkingPath.Rd | 11 vignettes/duplicate.missing.cases.Rmd | 2 vignettes/kernel.density.Rmd | 4 vignettes/pump.neighborhoods.Rmd | 16 - vignettes/roads.Rmd | 12 vignettes/time.series.Rmd | 2 vignettes/unstacking.bars.Rmd | 15 - 114 files changed, 1389 insertions(+), 1948 deletions(-)
Title: Miscellaneous Functions for Panel Data, Quantiles, and Printing
Results
Description: These are miscellaneous functions for working with panel data, quantiles, and printing results. For panel data, the package includes functions for making a panel data balanced (that is, dropping missing individuals that have missing observations in any time period), converting id numbers to row numbers, and to treat repeated cross sections as panel data under the assumption of rank invariance. For quantiles, there are functions to make distribution functions from a set of data points (this is particularly useful when a distribution function is created in several steps), to combine distribution functions based on some external weights, and to invert distribution functions. Finally, there are several other miscellaneous functions for obtaining weighted means, weighted distribution functions, and weighted quantiles; to generate summary statistics and their differences for two groups; and to add or drop covariates from formulas.
Author: Brantly Callaway [aut, cre]
Maintainer: Brantly Callaway <brantly.callaway@temple.edu>
Diff between BMisc versions 1.3.0 dated 2018-07-16 and 1.3.1 dated 2018-08-15
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 6 ++++++ R/BMisc.R | 29 +++++++++++++++++++---------- man/rhs.vars.Rd | 3 +++ man/toformula.Rd | 3 +++ 6 files changed, 41 insertions(+), 20 deletions(-)
Title: Trust, but Verify
Description: Declarative template-based framework for verifying that objects
meet structural requirements, and auto-composing error messages when they do
not.
Author: Brodie Gaslam [aut, cre],
Paxdiablo [cph] (Hash table implementation in src/pfhash.h),
R Core Team [cph] (Used/adapted several code snippets from R sources,
see src/misc-alike.c and src/valname.c)
Maintainer: Brodie Gaslam <brodie.gaslam@yahoo.com>
Diff between vetr versions 0.2.5 dated 2018-06-23 and 0.2.6 dated 2018-08-15
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ NEWS.md | 7 +++++++ R/abstract.R | 4 ---- README.md | 6 ++++-- build/vignette.rds |binary inst/doc/alike.Rmd | 2 ++ inst/doc/alike.html | 19 ++++++++++--------- inst/doc/vetr.html | 12 ++++++------ tests/unitizer/abstract.R | 14 +++++++++----- tests/unitizer/abstract.unitizer/data.rds |binary vignettes/alike.Rmd | 2 ++ vignettes/rmdhunks/declarative-checks.Rmd | 4 +++- 13 files changed, 58 insertions(+), 42 deletions(-)
Title: Efficient Constrained Based Modelling
Description: This Systems Biology Package (Gelius-Dietrich et. al. (2012) <doi:10.1186/1752-0509-7-125>) implements algorithms for constraint based analyses of metabolic networks, e.g. flux-balance analysis (FBA), minimization of metabolic adjustment (MOMA), regulatory on/off minimization (ROOM), robustness analysis and flux variability analysis. The package is easily extendable for additional algorithms. Most of the current LP/MILP solvers are supported via additional packages.
Author: Mayo Roettger [cre],
Gabriel Gelius-Dietrich [aut],
C. Jonathan Fritzemeier [ctb],
Rajen Piernikarczyk [ctb],
Marc Andre Daxer [ctb],
Benjamin Braasch [ctb],
Abdelmoneim Desouki [ctb],
Martin J. Lercher [ctb]
Maintainer: Mayo Roettger <mayo.roettger@hhu.de>
Diff between sybil versions 2.1.1 dated 2018-05-14 and 2.1.2 dated 2018-08-15
DESCRIPTION | 24 +- MD5 | 268 +++++++++++++++--------------- README.md | 2 inst/NEWS.Rd | 17 + inst/doc/sybil.pdf |binary man/SYBIL_SETTINGS.Rd | 2 man/addAlgorithm.Rd | 2 man/addCols-methods.Rd | 2 man/addColsToProb-methods.Rd | 2 man/addExchReact.Rd | 2 man/addReact.Rd | 2 man/addRows-methods.Rd | 2 man/addRowsCols-methods.Rd | 2 man/addRowsToProb-methods.Rd | 2 man/addSolver.Rd | 2 man/applyChanges-methods.Rd | 2 man/backupProb-methods.Rd | 2 man/blockedReact.Rd | 2 man/changeBounds.Rd | 2 man/changeColsBnds-methods.Rd | 2 man/changeColsBndsObjCoefs-methods.Rd | 2 man/changeGPR.Rd | 2 man/changeMatrixRow-methods.Rd | 2 man/changeObjCoefs-methods.Rd | 2 man/changeObjFunc.Rd | 2 man/changeRowsBnds-methods.Rd | 2 man/changeUptake-methods.Rd | 2 man/checkAkgorithm.Rd | 2 man/checkDefaultMethod.Rd | 2 man/checkOptSol-methods.Rd | 2 man/checkReactId.Rd | 2 man/checkVersion-methods.Rd | 2 man/checksol-class.Rd | 2 man/deadEndMetabolites-methods.Rd | 2 man/delProb-methods.Rd | 2 man/deprecated.Rd | 2 man/doubleFluxDel.Rd | 2 man/doubleGeneDel.Rd | 2 man/doubleReact.Rd | 2 man/editEnvir.Rd | 2 man/findExchReact.Rd | 2 man/fluxDistribution-class.Rd | 2 man/fluxVar.Rd | 2 man/geneDel.Rd | 2 man/geneDeletion.Rd | 2 man/getColPrim-methods.Rd | 2 man/getColsLowBnds-methods.Rd | 2 man/getColsNames-methods.Rd | 2 man/getColsUppBnds-methods.Rd | 2 man/getFluxDist-methods.Rd | 2 man/getNumCols-methods.Rd | 2 man/getNumNnz-methods.Rd | 2 man/getNumRows-methods.Rd | 2 man/getObjCoefs-methods.Rd | 2 man/getObjDir-methods.Rd | 2 man/getObjVal-methods.Rd | 2 man/getRedCosts-methods.Rd | 2 man/getRowsLowBnds-methods.Rd | 2 man/getRowsNames-methods.Rd | 2 man/getRowsUppBnds-methods.Rd | 2 man/getSolStat-methods.Rd | 2 man/getSolverParm-methods.Rd | 2 man/getsybilenv.Rd | 2 man/initProb-methods.Rd | 2 man/loadLPprob-methods.Rd | 2 man/loadQobj-methods.Rd | 2 man/makeOptsolMO.Rd | 2 man/mergeReact2Modelorg.Rd | 4 man/mod2irrev.Rd | 2 man/modelorg-class.Rd | 2 man/modelorg2ExPA.Rd | 2 man/modelorg2tsv.Rd | 2 man/modelorg_irrev-class.Rd | 2 man/multiDel.Rd | 2 man/netFlux-class.Rd | 2 man/oneFluxDel.Rd | 2 man/oneGeneDel.Rd | 2 man/onlyChangeGPR.Rd | 2 man/onlyCheckGPR.Rd | 2 man/optObj-class.Rd | 2 man/optObj.Rd | 2 man/optObj_clpAPI-class.Rd | 2 man/optObj_cplexAPI-class.Rd | 2 man/optObj_glpkAPI-class.Rd | 2 man/optObj_lpSolveAPI-class.Rd | 2 man/optimizeProb-methods.Rd | 2 man/optimizer.Rd | 2 man/optsol-class.Rd | 2 man/optsol_blockedReact-class.Rd | 2 man/optsol_fluxVar-class.Rd | 2 man/optsol_fluxdel-class.Rd | 2 man/optsol_genedel-class.Rd | 2 man/optsol_optimizeProb-class.Rd | 2 man/optsol_phpp-class.Rd | 2 man/optsol_robAna-class.Rd | 2 man/phpp.Rd | 2 man/ppProc-class.Rd | 2 man/printMetabolite-methods.Rd | 2 man/printReaction-methods.Rd | 2 man/promptSysBiolAlg.Rd | 2 man/reactId-class.Rd | 2 man/reactId_Exch-class.Rd | 2 man/readProb-methods.Rd | 2 man/readTSVmod.Rd | 2 man/resetChanges-methods.Rd | 2 man/rmReact.Rd | 2 man/robAna.Rd | 2 man/scaleProb-methods.Rd | 2 man/sensitivityAnalysis-methods.Rd | 2 man/setColsNames-methods.Rd | 2 man/setObjDir-methods.Rd | 2 man/setRhsZero-methods.Rd | 2 man/setRowsNames-methods.Rd | 2 man/setSolverParm-methods.Rd | 2 man/shrinkMatrix-methods.Rd | 2 man/singletonMetabolites-methods.Rd | 2 man/solveLp-methods.Rd | 2 man/summaryOptsol-class.Rd | 2 man/summaryOptsol.Rd | 2 man/sybil-package.Rd | 2 man/sybilError-class.Rd | 2 man/sybilLog-class.Rd | 2 man/sybilStack.Rd | 2 man/sysBiolAlg-class.Rd | 2 man/sysBiolAlg.Rd | 2 man/sysBiolAlg_fba-class.Rd | 2 man/sysBiolAlg_fbaEasyConstraint-class.Rd | 2 man/sysBiolAlg_fv-class.Rd | 2 man/sysBiolAlg_lmoma-class.Rd | 2 man/sysBiolAlg_moma-class.Rd | 2 man/sysBiolAlg_mtf-class.Rd | 2 man/sysBiolAlg_room-class.Rd | 2 man/upgradeModelorg.Rd | 2 man/writeProb-methods.Rd | 2 man/ypd.Rd | 2 135 files changed, 300 insertions(+), 273 deletions(-)
Title: Spatial Dependence: Weighting Schemes, Statistics and Models
Description: A collection of functions to create spatial weights matrix
objects from polygon 'contiguities', from point patterns by distance and
tessellations, for summarizing these objects, and for permitting their
use in spatial data analysis, including regional aggregation by minimum
spanning tree; a collection of tests for spatial 'autocorrelation',
including global 'Morans I', 'APLE', 'Gearys C', 'Hubert/Mantel' general cross
product statistic, Empirical Bayes estimates and 'Assunção/Reis' Index,
'Getis/Ord' G and multicoloured join count statistics, local 'Moran's I'
and 'Getis/Ord' G, 'saddlepoint' approximations, exact tests for global
and local 'Moran's I' and 'LOSH' local indicators of spatial heteroscedasticity;
and functions for estimating spatial simultaneous
'autoregressive' ('SAR') lag and error models, impact measures for lag
models, weighted and 'unweighted' 'SAR' and 'CAR' spatial regression models,
semi-parametric and Moran 'eigenvector' spatial filtering, 'GM SAR' error
models, and generalized spatial two stage least squares models.
Author: Roger Bivand [cre, aut] (<https://orcid.org/0000-0003-2392-6140>),
Micah Altman [ctb],
Luc Anselin [ctb],
Renato Assunção [ctb],
Olaf Berke [ctb],
Andrew Bernat [ctb],
Guillaume Blanchet [ctb],
Eric Blankmeyer [ctb],
Marilia Carvalho [ctb],
Bjarke Christensen [ctb],
Yongwan Chun [ctb],
Carsten Dormann [ctb],
Stéphane Dray [ctb],
Virgilio Gómez-Rubio [ctb],
Martin Gubri [ctb],
Rein Halbersma [ctb],
Elias Krainski [ctb],
Pierre Legendre [ctb],
Nicholas Lewin-Koh [ctb],
Hongfei Li [ctb],
Jielai Ma [ctb],
Abhirup Mallik [ctb, trl],
Giovanni Millo [ctb],
Werner Mueller [ctb],
Hisaji Ono [ctb],
Pedro Peres-Neto [ctb],
Gianfranco Piras [ctb],
Markus Reder [ctb],
Michael Tiefelsdorf [ctb],
René Westerholt [ctb],
Danlin Yu [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between spdep versions 0.7-7 dated 2018-04-03 and 0.7-8 dated 2018-08-15
DESCRIPTION | 12 +++--- MD5 | 36 ++++++++++---------- R/impacts.R | 74 +++++++++++++++++++++++++++++++++--------- R/knearneigh.R | 1 R/listw2sn.R | 2 - R/mess.R | 4 +- R/spBreg.R | 27 ++++++++++++--- R/weights-utils.R | 3 + build/vignette.rds |binary inst/doc/CO69.pdf |binary inst/doc/SpatialFiltering.pdf |binary inst/doc/nb.pdf |binary inst/doc/nb_igraph.html | 10 ++--- inst/doc/nb_sf.html | 40 +++++++++++----------- inst/doc/sids.pdf |binary man/aggregate.nb.Rd | 2 - man/impacts.sarlm.Rd | 31 +++++++++++------ man/lagsarlm.Rd | 15 +++++--- src/knn.c | 9 +++-- 19 files changed, 173 insertions(+), 93 deletions(-)
Title: Separable Gaussian Process Interpolation (Emulation)
Description: Functions for simplified emulation of time series computer model output in model parameter space using Gaussian processes. Stilt can be used more generally for Kriging of spatio-temporal fields. There are functions to predict at new parameter settings, to test the emulator using cross-validation (which includes information on 95% confidence interval empirical coverage), and to produce contour plots over 2D slices in model parameter space.
Author: Roman Olson, Won Chang, Klaus Keller, and Murali Haran
Maintainer: Kelsey Ruckert <datamgmt@scrim.psu.edu>
Diff between stilt versions 1.2.0 dated 2017-11-02 and 1.3.0 dated 2018-08-15
DESCRIPTION | 10 +++++----- MD5 | 34 ++++++++++++++++++---------------- NAMESPACE | 6 +++++- NEWS | 10 ++++++++++ R/emul.predict.R | 1 + R/emulator.R | 1 + R/mymessage.R | 2 +- R/predict.emul.R |only R/rsurface.plot.R | 2 +- R/test.csv.R | 2 +- data/emul.1D.RData |binary data/emul.Sicopolis.RData |binary man/emul.predict.Rd | 8 +++++--- man/emulator.Rd | 5 +++-- man/predict.emul.Rd |only man/rsurface.plot.Rd | 15 ++++++--------- man/sep.cov.Rd | 2 +- man/stilt-package.Rd | 6 +++--- man/test.csv.Rd | 2 +- 19 files changed, 62 insertions(+), 44 deletions(-)
Title: Bayesian Modeling via Goodness-of-Fit
Description: A Bayesian data modeling scheme that performs four interconnected tasks: (i) characterizes the uncertainty of the elicited parametric prior; (ii) provides exploratory diagnostic for checking prior-data conflict; (iii) computes the final statistical prior density estimate; and (iv) executes macro- and micro-inference. Primary reference is Mukhopadhyay, S. and Fletcher, D. 2018 paper "Generalized Empirical Bayes via Frequentist Goodness of Fit" (<https://www.nature.com/articles/s41598-018-28130-5 >).
Author: Subhadeep Mukhopadhyay, Douglas Fletcher
Maintainer: Doug Fletcher <tug25070@temple.edu>
Diff between BayesGOF versions 4.0 dated 2018-05-17 and 4.2 dated 2018-08-15
BayesGOF-4.0/BayesGOF/R/DS.missing.species.R |only BayesGOF-4.0/BayesGOF/man/DS.missing.species.Rd |only BayesGOF-4.2/BayesGOF/DESCRIPTION | 10 BayesGOF-4.2/BayesGOF/MD5 | 30 BayesGOF-4.2/BayesGOF/build/partial.rdb |binary BayesGOF-4.2/BayesGOF/build/vignette.rds |binary BayesGOF-4.2/BayesGOF/inst/doc/vignette_BayesGOF.R | 4 BayesGOF-4.2/BayesGOF/inst/doc/vignette_BayesGOF.Rmd | 4 BayesGOF-4.2/BayesGOF/inst/doc/vignette_BayesGOF.html | 664 +++++++++++------- BayesGOF-4.2/BayesGOF/man/BayesGOF-package.Rd | 2 BayesGOF-4.2/BayesGOF/man/DS.macro.inf.Rd | 3 BayesGOF-4.2/BayesGOF/man/DS.micro.inf.Rd | 3 BayesGOF-4.2/BayesGOF/man/DS.posterior.reduce.Rd | 3 BayesGOF-4.2/BayesGOF/man/DS.prior.Rd | 3 BayesGOF-4.2/BayesGOF/man/DS.sampler.Rd | 3 BayesGOF-4.2/BayesGOF/man/gLP.basis.Rd | 3 BayesGOF-4.2/BayesGOF/vignettes/vignette_BayesGOF.Rmd | 4 17 files changed, 471 insertions(+), 265 deletions(-)
Title: Compile and Preview Snippets of 'LaTeX' in 'RStudio'
Description: Compile and preview snippets of 'LaTeX'. Can be used directly from the R console, from 'RStudio',
in Shiny apps and R Markdown documents. Must have 'pdflatex' or 'xelatex' or 'lualatex' in 'PATH'.
Author: Jonathan Sidi [aut, cre],
Daniel Polhamus [aut]
Maintainer: Jonathan Sidi <yonis@metrumrg.com>
Diff between texPreview versions 1.1.4 dated 2018-06-07 and 1.1.5 dated 2018-08-15
texPreview-1.1.4/texPreview/build |only texPreview-1.1.5/texPreview/DESCRIPTION | 10 +-- texPreview-1.1.5/texPreview/MD5 | 16 ++--- texPreview-1.1.5/texPreview/NEWS.md | 5 + texPreview-1.1.5/texPreview/R/defaults.R | 2 texPreview-1.1.5/texPreview/R/texPreview.R | 5 + texPreview-1.1.5/texPreview/README.md | 4 - texPreview-1.1.5/texPreview/inst/hex.png |only texPreview-1.1.5/texPreview/man/tex_opts.Rd | 2 texPreview-1.1.5/texPreview/tests/README.md | 80 +++++++++++++++++----------- 10 files changed, 74 insertions(+), 50 deletions(-)
Title: Supports Developing, Building and Deploying R Solution
Description: Supports safe and reproducible solutions development in R.
It will help you with environment separation per project,
dependency management, local packages creation and preparing
deployment packs for your solutions.
Author: Walerian Sokolowski [aut, cre],
Wit Jakuczun [aut],
Yulia Yakimechko [aut],
Mateusz Kalinowski [aut],
Ryszard Szymanski [aut],
WLOG Solutions [cph],
R Consortium [ctb] (Definitions of system requirements are taken from
sysreqsdb project.)
Maintainer: Walerian Sokolowski <rsuite@wlogsolutions.com>
Diff between RSuite versions 0.31-243 dated 2018-07-26 and 0.32-244 dated 2018-08-15
RSuite-0.31-243/RSuite/man/tmpl_get_registered.Rd |only RSuite-0.31-243/RSuite/man/tmpl_start_pkg.Rd |only RSuite-0.31-243/RSuite/man/tmpl_start_prj.Rd |only RSuite-0.32-244/RSuite/DESCRIPTION | 6 RSuite-0.32-244/RSuite/MD5 | 71 RSuite-0.32-244/RSuite/NAMESPACE | 7 RSuite-0.32-244/RSuite/NEWS.md | 18 RSuite-0.32-244/RSuite/R/01_api_rsuite.R | 47 RSuite-0.32-244/RSuite/R/08_api_tmpl.R | 147 - RSuite-0.32-244/RSuite/R/10_internal_env.R | 17 RSuite-0.32-244/RSuite/R/11_install_prj_deps.R | 19 RSuite-0.32-244/RSuite/R/16_srcrepo_build.R | 29 RSuite-0.32-244/RSuite/R/32_rc_adapter_git.R | 26 RSuite-0.32-244/RSuite/R/50_pkg_deployment.R | 4 RSuite-0.32-244/RSuite/R/52_dependencies.R | 25 RSuite-0.32-244/RSuite/R/55_pkg_source_md5.R | 2 RSuite-0.32-244/RSuite/R/56_sysreqs_utils.R | 608 ++----- RSuite-0.32-244/RSuite/R/57_sysreqs_recipies.R | 2 RSuite-0.32-244/RSuite/R/58_templates.R | 12 RSuite-0.32-244/RSuite/R/98_shell.R | 935 +++++++---- RSuite-0.32-244/RSuite/R/99_rpatches.R | 258 +-- RSuite-0.32-244/RSuite/R/packages_import.R | 6 RSuite-0.32-244/RSuite/inst/doc/RSuite-vignette.Rmd | 11 RSuite-0.32-244/RSuite/inst/doc/RSuite-vignette.html | 149 - RSuite-0.32-244/RSuite/inst/extdata/builtin_templates.zip |binary RSuite-0.32-244/RSuite/man/RSuite.Rd | 6 RSuite-0.32-244/RSuite/man/rsuite_check_version.Rd | 2 RSuite-0.32-244/RSuite/man/rsuite_getLogger.Rd | 2 RSuite-0.32-244/RSuite/man/rsuite_get_os_info.Rd |only RSuite-0.32-244/RSuite/man/rsuite_get_rc_adapter_names.Rd | 2 RSuite-0.32-244/RSuite/man/rsuite_get_repo_adapter_names.Rd | 2 RSuite-0.32-244/RSuite/man/rsuite_register_rc_adapter.Rd | 2 RSuite-0.32-244/RSuite/man/rsuite_register_repo_adapter.Rd | 2 RSuite-0.32-244/RSuite/man/rsuite_unregister_rc_adapter.Rd | 2 RSuite-0.32-244/RSuite/man/rsuite_unregister_repo_adapter.Rd |only RSuite-0.32-244/RSuite/man/rsuite_update.Rd | 2 RSuite-0.32-244/RSuite/man/tmpl_list_registered.Rd |only RSuite-0.32-244/RSuite/man/tmpl_register.Rd | 5 RSuite-0.32-244/RSuite/man/tmpl_start.Rd |only RSuite-0.32-244/RSuite/vignettes/RSuite-vignette.Rmd | 11 40 files changed, 1354 insertions(+), 1083 deletions(-)
Title: Build Panel Data Sets from PSID Raw Data
Description: Makes it easy to build panel data in wide format from Panel Survey
of Income Dynamics ('PSID') delivered raw data. Deals with data downloaded and
pre-processed by 'Stata' or 'SAS', or can optionally download directly from
the PSID server using the 'SAScii' package. 'psidR' takes care of merging
data from each wave onto a cross-period index file, so that individuals can be
followed over time. The user must specify which years they are interested in,
and the 'PSID' variable names (e.g. ER21003) for each year (they differ in each
year). The package offers helper functions to retrieve variable names from different
waves. There are different panel data designs and sample subsetting criteria
implemented ("SRC", "SEO", "immigrant" and "latino" samples).
Author: Florian Oswald
Maintainer: Florian Oswald <florian.oswald@gmail.com>
Diff between psidR versions 1.5 dated 2018-04-20 and 1.6 dated 2018-08-15
psidR-1.5/psidR/R/get.variable.names.r |only psidR-1.5/psidR/man/get.variable.names.Rd |only psidR-1.6/psidR/DESCRIPTION | 9 +-- psidR-1.6/psidR/MD5 | 14 ++-- psidR-1.6/psidR/NEWS | 6 ++ psidR-1.6/psidR/R/build.panel.r | 87 ++++++++++++++++++------------ psidR-1.6/psidR/R/makeids.r | 14 ++-- psidR-1.6/psidR/man/build.panel.Rd | 63 ++++++++++++--------- psidR-1.6/psidR/man/build.psid.Rd | 4 + 9 files changed, 117 insertions(+), 80 deletions(-)
Title: Calculate Pairwise Multiple Comparisons of Mean Rank Sums
Extended
Description: For one-way layout experiments the one-way ANOVA can
be performed as an omnibus test. All-pairs multiple comparisons
tests (Tukey-Kramer test, Scheffe test, LSD-test)
and many-to-one tests (Dunnett test) for normally distributed
residuals and equal within variance are available. Furthermore,
all-pairs tests (Games-Howell test, Tamhane's T2 test,
Dunnett T3 test, Ury-Wiggins-Hochberg test) and many-to-one
(Tamhane-Dunnett Test) for normally distributed residuals
and heterogeneous variances are provided. Van der Waerden's normal
scores test for omnibus, all-pairs and many-to-one tests is
provided for non-normally distributed residuals and homogeneous
variances. The Kruskal-Wallis, BWS and Anderson-Darling
omnibus test and all-pairs tests
(Nemenyi test, Dunn test, Conover test, Dwass-Steele-Critchlow-
Fligner test) as well as many-to-one (Nemenyi test, Dunn test,
U-test) are given for the analysis of variance by ranks.
Non-parametric trend tests (Jonckheere test, Cuzick test,
Johnson-Mehrotra test, Spearman test) are included.
In addition, a Friedman-test for one-way ANOVA with repeated
measures on ranks (CRBD) and Skillings-Mack test for unbalanced
CRBD is provided with consequent all-pairs tests (Nemenyi test,
Siegel test, Miller test, Conover test, Exact test)
and many-to-one tests (Nemenyi test, Demsar test, Exact test).
A trend can be tested with Pages's test. Durbin's test
for a two-way balanced incomplete block design (BIBD) is given
in this package as well as Gore's test for CRBD with multiple
observations per cell is given. Outlier tests, Mandel's k- and
h statistic as well as functions for Type I error and Power
analysis as well as generic summary, print and plot methods
are provided.
Author: Thorsten Pohlert
Maintainer: Thorsten Pohlert <thorsten.pohlert@gmx.de>
Diff between PMCMRplus versions 1.3.0 dated 2018-07-28 and 1.4.0 dated 2018-08-15
DESCRIPTION | 10 MD5 | 162 +++++------ NAMESPACE | 9 R/GSTTest.R |only R/frdAllPairsConoverTest.R | 2 R/frdAllPairsExactTest.R | 2 R/frdAllPairsMillerTest.R | 2 R/frdAllPairsNemenyiTest.R | 2 R/frdAllPairsSiegelTest.R | 2 R/frdManyOneDemsarTest.R | 2 R/frdManyOneExactTest.R | 2 R/frdManyOneNemenyiTest.R | 2 R/kruskalTest.R | 2 R/quadeAllPairsTest.R | 2 R/siegelTukeyTest.R |only README.md | 55 +++ build/vignette.rds |binary inst/NEWS.Rd | 30 ++ inst/README | 48 ++- inst/doc/QuickReferenceGuide.html | 556 +++++++++++++++++++++----------------- man/GSTTest.Rd |only man/Grubbs.Rd | 1 man/MTest.Rd | 4 man/Mandel-h.Rd | 1 man/Mandel-k.Rd | 1 man/NPMTest.Rd | 7 man/adAllPairsTest.Rd | 9 man/adManyOneTest.Rd | 7 man/bwsAllPairsTest.Rd | 8 man/bwsManyOneTest.Rd | 9 man/bwsTrendTest.Rd | 11 man/chaAllPairsNashimotoTest.Rd | 11 man/chackoTest.Rd | 7 man/cochranTest.Rd | 7 man/cuzickTest.Rd | 11 man/doubleGrubbsTest.Rd | 4 man/dscfAllPairsTest.Rd | 7 man/duncanTest.Rd | 4 man/dunnettT3Test.Rd | 4 man/dunnettTest.Rd | 4 man/frdAllPairsConoverTest.Rd | 10 man/frdAllPairsExactTests.Rd | 10 man/frdAllPairsMillerTests.Rd | 10 man/frdAllPairsNemenyiTests.Rd | 10 man/frdAllPairsSiegelTest.Rd | 10 man/frdManyOneDemsarTest.Rd | 10 man/frdManyOneExactTests.Rd | 10 man/frdManyOneNemenyiTest.Rd | 10 man/gamesHowellTest.Rd | 4 man/gesdTest.Rd | 4 man/grubbsTest.Rd | 4 man/johnsonTest.Rd | 11 man/jonckheereTest.Rd | 14 man/kruskalTest.Rd | 6 man/kwAllPairsConoverTest.Rd | 7 man/kwAllPairsDunnTest.Rd | 12 man/kwAllPairsNemenyiTest.Rd | 11 man/kwManyOneConoverTest.Rd | 14 man/kwManyOneDunnTest.Rd | 14 man/kwManyOneNdwTest.Rd | 14 man/leTest.Rd | 7 man/lsdTest.Rd | 4 man/mackWolfeTest.Rd | 11 man/manyOneUTest.Rd | 9 man/normalScoresAllPairsTest.Rd | 12 man/normalScoresManyOneTest.Rd | 13 man/pageTest.Rd | 11 man/powerMCTests.Rd | 27 - man/powerOneWayTests.Rd | 18 - man/quadeAllPairsTest.Rd | 7 man/scheffeTest.Rd | 4 man/shirleyWilliamsTest.Rd | 14 man/siegelTukeyTest.Rd |only man/snkTest.Rd | 4 man/spearmanTest.Rd | 11 man/steelTest.Rd | 3 man/tamhaneDunnettTest.Rd | 4 man/tamhaneT2Test.Rd | 4 man/tukeyTest.Rd | 4 man/uryWigginsHochbergTest.Rd | 4 man/vanWaerdenAllPairsTest.Rd | 8 man/vanWaerdenManyOneTest.Rd | 13 man/welchManyOneTTest.Rd | 4 man/williamsTest.Rd | 3 84 files changed, 712 insertions(+), 689 deletions(-)
Title: Multiplicative Mixed Models using the Template Model Builder
Description: Fit multiplicative mixed models using maximum likelihood estimation via the Template
Model Builder (TMB), Kristensen K, Nielsen A, Berg CW, Skaug H, Bell BM (2016) <doi:10.18637/jss.v070.i05>.
One version of the multiplicative mixed model is applied in Piepho (1999) <doi:10.1111/j.0006-341X.1999.01120.x>.
The package provides functions for calculating confidence intervals for the model parameters
and for performing likelihood ratio tests.
Author: Sofie Poedenphant [aut, cre],
Per Bruun Brockhoff [aut]
Maintainer: Sofie Poedenphant <sofp@dtu.dk>
Diff between mumm versions 0.2.0 dated 2018-07-01 and 0.2.1 dated 2018-08-15
mumm-0.2.0/mumm/man/ranef.Rd |only mumm-0.2.1/mumm/DESCRIPTION | 16 ++-- mumm-0.2.1/mumm/MD5 | 17 ++-- mumm-0.2.1/mumm/NAMESPACE | 3 mumm-0.2.1/mumm/R/lrt.R |only mumm-0.2.1/mumm/R/mumm.R | 8 +- mumm-0.2.1/mumm/R/mumm.methods.R | 143 ++++-------------------------------- mumm-0.2.1/mumm/man/confint.mumm.Rd | 6 - mumm-0.2.1/mumm/man/lrt.Rd | 8 +- mumm-0.2.1/mumm/man/mumm.Rd | 6 + mumm-0.2.1/mumm/man/ranef.mumm.Rd |only 11 files changed, 52 insertions(+), 155 deletions(-)
Title: Access London Natural History Museum Host-Helminth Record
Database
Description: Access to large host-parasite data is often hampered by the
availability of data and difficulty in obtaining it in a programmatic way
to encourage analyses. 'helminthR' provides a programmatic interface to the
London Natural History Museum's host-parasite database, one of the largest
host-parasite databases existing currently <http://www.nhm.ac.uk/research-curation/scientific-resources/taxonomy-systematics/host-parasites/>. The package allows the user
to query by host species, parasite species, and geographic location.
Author: Tad Dallas
Maintainer: Tad Dallas <tad.a.dallas@gmail.com>
Diff between helminthR versions 1.0.5 dated 2018-07-30 and 1.0.6 dated 2018-08-15
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 10 ++++++++-- R/findHost.R | 8 +------- R/findLocation.R | 12 +++++------- R/findParasite.R | 7 ------- inst/doc/helminthR_vignette.html | 12 ++++++------ 7 files changed, 29 insertions(+), 38 deletions(-)
Title: Automated Runs and Evaluations of Ecological Niche Models
Description: Automatically partitions data into evaluation bins, executes ecological niche models across a range of settings, and calculates a variety of evaluation statistics. Current version only implements ENMs with Maxent (Phillips et al. 2006) or maxnet (Phillips et al. 2017).
Author: Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Uriarte and Robert P. Anderson
Maintainer: Robert Muscarella <bob.muscarella@gmail.com>
Diff between ENMeval versions 0.2.2 dated 2017-01-10 and 0.3.0 dated 2018-08-15
DESCRIPTION | 20 MD5 | 49 + NAMESPACE | 8 NEWS | 9 R/ENMevaluate.R | 76 ++ R/all.classes.R | 37 - R/calc.aicc.R | 14 R/maxentJARversion.R |only R/maxnet.predictRaster.R |only R/modelTune.maxentJar.R |only R/modelTune.maxnet.R |only R/tuning.R | 213 ++++---- R/var.importance.R | 16 README.md | 10 build/vignette.rds |binary data/enmeval_results.rda |binary data/eval2.rda |binary inst/doc/ENMeval-vignette.R | 22 inst/doc/ENMeval-vignette.Rmd | 36 - inst/doc/ENMeval-vignette.html | 1088 +++++++++++++++++++++++++---------------- man/ENMeval-package.Rd | 28 - man/ENMevaluate.Rd | 49 + man/ENMevaluation-class.Rd | 3 man/enmeval_results.Rd | 5 man/get.evaluation.bins.Rd | 1 man/maxnet.functions.Rd |only man/var.importance.Rd | 4 vignettes/ENMeval-vignette.Rmd | 36 - 28 files changed, 1070 insertions(+), 654 deletions(-)
Title: R Interface to Geochemical Modeling Software
Description: A geochemical modeling program developed by the US Geological
Survey that is designed to perform a wide variety of aqueous geochemical
calculations, including speciation, batch-reaction, one-dimensional
reactive-transport, and inverse geochemical calculations.
Author: S.R. Charlton, D.L. Parkhurst, and C.A.J. Appelo, with contributions
from D. Gillespie for Chipmunk BASIC and S.D. Cohen, A.C. Hindmarsh,
R. Serban, D. Shumaker, and A.G. Taylor for CVODE/SUNDIALS
Maintainer: S.R. Charlton <charlton@usgs.gov>
Diff between phreeqc versions 3.4.8 dated 2018-08-14 and 3.4.9 dated 2018-08-15
DESCRIPTION | 6 +- MD5 | 22 ++++----- R/phreeqc.R | 2 man/phreeqc-package.Rd | 2 src/IPhreeqc.h | 2 src/Version.h | 4 - src/phreeqcpp/PBasic.cpp | 100 +++++++++++++++++++++----------------------- src/phreeqcpp/PBasic.h | 44 +++++++++---------- src/phreeqcpp/Phreeqc.cpp | 2 src/phreeqcpp/cl1.cpp | 6 -- src/phreeqcpp/transport.cpp | 6 +- src/phreeqcpp/utilities.cpp | 3 - 12 files changed, 97 insertions(+), 102 deletions(-)
Title: R Client for the 'Civis data science API'
Description: A set of tools around common workflows and a convenient interface to make
requests directly to the 'Civis data science API' <https://www.civisanalytics.com/platform/>.
Author: Patrick Miller [cre, aut],
Keith Ingersoll [aut],
Bill Lattner [ctb],
Anh Le [ctb],
Michelangelo D'Agostino [ctb],
Sam Weiss [ctb],
Stephen Hoover [ctb],
Danning Chen [ctb],
Elizabeth Sander [ctb]
Maintainer: Patrick Miller <pmiller@civisanalytics.com>
Diff between civis versions 1.5.0 dated 2018-06-21 and 1.5.1 dated 2018-08-15
DESCRIPTION | 9 MD5 | 337 - NAMESPACE | 63 R/civis_ml.R | 3 R/generate_client.R | 16 R/generated_client.R | 3276 ++++++++++- R/sysdata.rda |binary build/vignette.rds |binary inst/doc/civis_ml.html | 4 man/DBI.Rd | 4 man/apps_get.Rd | 1 man/apps_get_instances.Rd | 1 man/apps_get_releases.Rd | 1 man/apps_list_instances.Rd | 1 man/apps_list_releases.Rd | 5 man/apps_patch_instances.Rd | 1 man/apps_post_instances.Rd | 1 man/apps_put_instances_archive.Rd | 1 man/await.Rd | 9 man/civis_ml.Rd | 11 man/civis_ml_extra_trees_classifier.Rd | 22 man/civis_ml_extra_trees_regressor.Rd | 17 man/civis_ml_gradient_boosting_classifier.Rd | 17 man/civis_ml_gradient_boosting_regressor.Rd | 18 man/civis_ml_random_forest_classifier.Rd | 22 man/civis_ml_random_forest_regressor.Rd | 19 man/civis_ml_sparse_linear_regressor.Rd | 16 man/civis_ml_sparse_logistic.Rd | 4 man/civis_ml_sparse_ridge_regressor.Rd | 20 man/clusters_delete_kubernetes_partitions.Rd |only man/clusters_get_kubernetes.Rd | 10 man/clusters_list_kubernetes.Rd | 10 man/clusters_patch_kubernetes_partitions.Rd |only man/clusters_post_kubernetes_partitions.Rd |only man/codes_patch.Rd | 4 man/codes_put.Rd | 3 man/credentials_post.Rd | 5 man/download_civis.Rd | 11 man/enhancements_delete_civis_data_match_projects.Rd |only man/enhancements_delete_civis_data_match_runs.Rd |only man/enhancements_delete_civis_data_match_shares_groups.Rd |only man/enhancements_delete_civis_data_match_shares_users.Rd |only man/enhancements_delete_data_unification_projects.Rd |only man/enhancements_delete_data_unification_runs.Rd |only man/enhancements_delete_data_unification_shares_groups.Rd |only man/enhancements_delete_data_unification_shares_users.Rd |only man/enhancements_delete_table_deduplication_projects.Rd |only man/enhancements_delete_table_deduplication_runs.Rd |only man/enhancements_delete_table_deduplication_shares_groups.Rd |only man/enhancements_delete_table_deduplication_shares_users.Rd |only man/enhancements_get_civis_data_match.Rd |only man/enhancements_get_civis_data_match_runs.Rd |only man/enhancements_get_data_unification.Rd |only man/enhancements_get_data_unification_runs.Rd |only man/enhancements_get_table_deduplication.Rd |only man/enhancements_get_table_deduplication_runs.Rd |only man/enhancements_list_civis_data_match_projects.Rd |only man/enhancements_list_civis_data_match_runs.Rd |only man/enhancements_list_civis_data_match_runs_logs.Rd |only man/enhancements_list_civis_data_match_runs_outputs.Rd |only man/enhancements_list_civis_data_match_shares.Rd |only man/enhancements_list_data_unification_projects.Rd |only man/enhancements_list_data_unification_runs.Rd |only man/enhancements_list_data_unification_runs_logs.Rd |only man/enhancements_list_data_unification_runs_outputs.Rd |only man/enhancements_list_data_unification_shares.Rd |only man/enhancements_list_table_deduplication_projects.Rd |only man/enhancements_list_table_deduplication_runs.Rd |only man/enhancements_list_table_deduplication_runs_logs.Rd |only man/enhancements_list_table_deduplication_runs_outputs.Rd |only man/enhancements_list_table_deduplication_shares.Rd |only man/enhancements_patch_cass_ncoa.Rd | 3 man/enhancements_patch_civis_data_match.Rd |only man/enhancements_patch_data_unification.Rd |only man/enhancements_patch_table_deduplication.Rd |only man/enhancements_post_cass_ncoa.Rd | 9 man/enhancements_post_civis_data_match.Rd |only man/enhancements_post_civis_data_match_cancel.Rd |only man/enhancements_post_civis_data_match_runs.Rd |only man/enhancements_post_data_unification.Rd |only man/enhancements_post_data_unification_cancel.Rd |only man/enhancements_post_data_unification_runs.Rd |only man/enhancements_post_table_deduplication.Rd |only man/enhancements_post_table_deduplication_cancel.Rd |only man/enhancements_post_table_deduplication_runs.Rd |only man/enhancements_put_cass_ncoa.Rd | 4 man/enhancements_put_civis_data_match.Rd |only man/enhancements_put_civis_data_match_archive.Rd |only man/enhancements_put_civis_data_match_projects.Rd |only man/enhancements_put_civis_data_match_shares_groups.Rd |only man/enhancements_put_civis_data_match_shares_users.Rd |only man/enhancements_put_data_unification.Rd |only man/enhancements_put_data_unification_archive.Rd |only man/enhancements_put_data_unification_projects.Rd |only man/enhancements_put_data_unification_shares_groups.Rd |only man/enhancements_put_data_unification_shares_users.Rd |only man/enhancements_put_person_matching_shares_groups.Rd | 4 man/enhancements_put_person_matching_shares_users.Rd | 4 man/enhancements_put_table_deduplication.Rd |only man/enhancements_put_table_deduplication_archive.Rd |only man/enhancements_put_table_deduplication_projects.Rd |only man/enhancements_put_table_deduplication_shares_groups.Rd |only man/enhancements_put_table_deduplication_shares_users.Rd |only man/exports_list.Rd | 6 man/fetch_all.Rd | 1 man/fetch_until.Rd | 1 man/files_get.Rd | 8 man/get_database_id.Rd | 1 man/get_table_id.Rd | 1 man/imports_list_files_runs.Rd | 4 man/imports_post.Rd | 3 man/imports_post_batches.Rd | 6 man/imports_post_files.Rd | 4 man/imports_put_syncs.Rd | 3 man/jobs_put_shares_users.Rd | 4 man/media_list_optimizations.Rd | 4 man/media_list_optimizations_runs_logs.Rd | 3 man/media_list_ratecards.Rd | 3 man/media_list_targets.Rd | 3 man/media_patch_optimizations.Rd | 6 man/media_patch_ratecards.Rd | 4 man/models_patch.Rd | 12 man/models_post.Rd | 15 man/notebooks_list_deployments.Rd | 4 man/notebooks_patch.Rd | 9 man/notebooks_post.Rd | 9 man/notebooks_put.Rd | 9 man/notebooks_put_git.Rd | 4 man/predictions_list_runs.Rd | 4 man/predictions_put_schedules.Rd | 3 man/projects_put.Rd | 3 man/queries_list.Rd | 6 man/queries_post.Rd | 7 man/query_civis.Rd | 4 man/query_civis_file.Rd | 9 man/read_civis.Rd | 1 man/refresh_table.Rd | 1 man/remote_hosts_post_authenticate.Rd | 4 man/reports_get_services.Rd | 3 man/reports_patch_services.Rd | 7 man/reports_patch_snapshots.Rd | 4 man/reports_post_services.Rd | 7 man/reports_post_snapshots.Rd | 4 man/reports_put_git.Rd | 4 man/results_get_services.Rd | 3 man/results_patch_services.Rd | 7 man/results_patch_snapshots.Rd | 4 man/results_post_services.Rd | 7 man/results_post_snapshots.Rd | 4 man/results_put_git.Rd | 4 man/scripts_list.Rd | 6 man/scripts_list_containers_runs_logs.Rd | 3 man/scripts_list_custom.Rd | 6 man/scripts_list_custom_runs.Rd | 4 man/scripts_list_custom_runs_outputs.Rd | 4 man/scripts_list_javascript_runs_logs.Rd | 3 man/scripts_list_python3_runs.Rd | 4 man/scripts_list_python3_runs_logs.Rd | 3 man/scripts_list_python3_runs_outputs.Rd | 4 man/scripts_list_sql_runs.Rd | 4 man/scripts_list_sql_runs_outputs.Rd | 4 man/scripts_patch_containers.Rd | 11 man/scripts_patch_custom.Rd | 7 man/scripts_patch_javascript.Rd | 8 man/scripts_patch_python3.Rd | 9 man/scripts_patch_r.Rd | 11 man/scripts_patch_sql.Rd | 10 man/scripts_post_containers.Rd | 15 man/scripts_post_containers_runs_logs.Rd | 4 man/scripts_post_custom_clone.Rd | 4 man/scripts_post_python3.Rd | 11 man/scripts_post_python3_clone.Rd | 4 man/scripts_post_sql.Rd | 9 man/scripts_post_sql_clone.Rd | 4 man/scripts_put_containers.Rd | 13 man/scripts_put_custom.Rd | 7 man/scripts_put_python3.Rd | 11 man/scripts_put_r_git.Rd | 4 man/search_list.Rd | 10 man/services_get.Rd | 1 man/services_list.Rd | 1 man/services_list_deployments.Rd | 4 man/services_patch.Rd | 1 man/services_post.Rd | 15 man/services_post_clone.Rd | 1 man/services_post_redeploy.Rd | 3 man/services_put.Rd | 1 man/services_put_archive.Rd | 1 man/templates_patch_reports.Rd | 4 man/templates_patch_scripts.Rd | 4 man/templates_post_reports.Rd | 4 man/templates_post_scripts.Rd | 4 man/templates_put_reports.Rd | 4 man/transfer_table.Rd | 8 man/users_get.Rd | 1 man/workflows_list_executions.Rd | 4 man/workflows_patch.Rd | 5 man/workflows_post_clone.Rd | 3 man/workflows_put_git.Rd | 4 man/write_civis.Rd | 19 man/write_civis_file.Rd | 4 201 files changed, 3961 insertions(+), 525 deletions(-)
Title: Analyse Audio Recordings and Automatically Extract Animal
Vocalizations
Description: Contains all the necessary tools to process audio recordings of
various formats (e.g., WAV, WAC, MP3, ZC), filter noisy files,
display audio signals, detect and extract automatically acoustic
features for further analysis such as classification.
Author: Jean Marchal [aut, cre],
Francois Fabianek [aut],
Christopher Scott [aut],
Chris Corben [ctb, cph] (Read ZC files, original C code),
Peter Wilson [ctb, cph] (Read ZC files, original R code),
Wildlife Acoustics, Inc. [ctb, cph] (Read WAC files, original C code),
WavX Inc. [cph]
Maintainer: Jean Marchal <jean.marchal@wavx.ca>
Diff between bioacoustics versions 0.1.4 dated 2018-08-09 and 0.1.5 dated 2018-08-15
DESCRIPTION | 6 MD5 | 12 NEWS.md | 57 ++- README.md | 2 configure | 830 ++++++++++++++++++++++++++++++++++++++++++++++---------- configure.ac | 85 +++-- src/Makevars.in | 7 7 files changed, 786 insertions(+), 213 deletions(-)
Title: Australian Government Bureau of Meteorology (BOM) Data from R
Description: Provides functions to interface with Australian Government Bureau
of Meteorology (BOM) data, fetching data and returning a tidy data frame of
précis forecasts, historical and current weather data from stations,
agriculture bulletin data, BOM 0900 or 1500 weather bulletins or a raster
stack object of satellite imagery from GeoTIFF files. Data (c) Australian
Government Bureau of Meteorology Creative Commons (CC) Attribution 3.0
licence or Public Access Licence (PAL) as appropriate. See
<http://www.bom.gov.au/other/copyright.shtml> for further details.
Author: Adam Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>),
Jonathan Carroll [aut] (<https://orcid.org/0000-0002-1404-5264>),
Dean Marchiori [aut],
Mark Padgham [aut, rev] (<https://orcid.org/0000-0003-2172-5265>),
Hugh Parsonage [aut] (<https://orcid.org/0000-0003-4055-0835>),
Keith Pembleton [aut] (<https://orcid.org/0000-0002-1896-4516>),
James Balamuta [ctb] (<https://orcid.org/0000-0003-2826-8458>),
Brooke Anderson [rev] (<https://orcid.org/0000-0002-5012-9035>)
Maintainer: Adam Sparks <adamhsparks@gmail.com>
Diff between bomrang versions 0.2.2 dated 2018-07-19 and 0.3.0 dated 2018-08-15
DESCRIPTION | 14 - MD5 | 54 ++-- NAMESPACE | 1 NEWS.md | 32 ++ R/get_ag_bulletin.R | 7 R/get_coastal_forecast.R |only R/get_current_weather.R | 6 R/get_precis_forecast.R | 10 R/get_satellite_imagery.R | 12 R/get_weather_bulletins.R | 4 R/update_forecast_towns.R | 2 R/update_station_locations.R | 2 README.md | 39 ++- inst/CITATION | 5 inst/doc/bomrang.R | 3 inst/doc/bomrang.Rmd | 115 +++++++- inst/doc/bomrang.html | 363 +++++++++++++++++++++------- inst/extdata/JSONurl_site_list.rda |binary inst/extdata/marine_AAC_codes.rda |only inst/extdata/stations_site_list.rda |binary man/get_available_imagery.Rd | 2 man/get_coastal_forecast.Rd |only man/get_historical.Rd | 4 man/get_precis_forecast.Rd | 6 man/get_satellite_imagery.Rd | 2 tests/testthat/test-get_coastal_forecast.R |only tests/testthat/test-get_historical.R | 6 tests/testthat/test-get_precis_forecast.R | 6 tests/testthat/test-get_satellite_imagery.R | 2 vignettes/bomrang.Rmd | 115 +++++++- 30 files changed, 611 insertions(+), 201 deletions(-)
Title: Relational Query Generator for Data Manipulation at Scale
Description: A piped query generator based on Edgar F. Codd's relational
algebra, and on production experience using 'SQL' and 'dplyr' at big data
scale. The design represents an attempt to make 'SQL' more teachable by
denoting composition by a sequential pipeline notation instead of nested
queries or functions. The implementation delivers reliable high
performance data processing on large data systems such as 'Spark',
databases, and 'data.table'. Package features include: data processing trees
or pipelines as observable objects (able to report both columns
produced and columns used), optimized 'SQL' generation as an explicit
user visible modeling step, explicit query reasoning and checking.
Author: John Mount [aut, cre],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between rquery versions 0.6.1 dated 2018-08-01 and 0.6.2 dated 2018-08-15
DESCRIPTION | 10 +++++----- MD5 | 28 ++++++++++++++-------------- NAMESPACE | 2 ++ NEWS.md | 6 ++++++ R/non_sql_node.R | 5 ++++- R/order_by.R | 4 ++-- R/project.R | 8 ++++++++ README.md | 14 +++++++------- inst/doc/AssigmentPartitioner.html | 4 ++-- inst/doc/PipeableSQL.html | 4 ++-- inst/doc/QueryGeneration.html | 4 ++-- inst/doc/rquery_intro.html | 4 ++-- man/materialize_node.Rd | 2 +- man/project_nse.Rd | 3 +++ man/project_se.Rd | 3 +++ 15 files changed, 63 insertions(+), 38 deletions(-)