Title: Paired Response Curve
Description: Estimation, prediction and testing for analyzing serial dilution assay data (Fong and Yu 2015 <DOI:10.1080/19466315.2015.1093019>) using paired response curve, which is a model of the nonlinear functional relationship between experimental outcomes measured at two different dilutions.
Author: Youyi Fong
Maintainer: Youyi Fong <youyifong@gmail.com>
Diff between prc versions 2018.1-31 dated 2018-01-31 and 2018.8-17 dated 2018-08-17
ChangeLog | 3 +++ DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/prc.R | 27 +++++++++++++++------------ R/prcsp.R | 8 ++++---- R/quadratic.R | 4 ++-- R/quadratic.sp.R | 6 +++--- tests/doRUnit.R | 20 ++++++++++---------- 8 files changed, 47 insertions(+), 41 deletions(-)
Title: Linear Mixed-Effects Models using 'Eigen' and S4
Description: Fit linear and generalized linear mixed-effects models.
The models and their components are represented using S4 classes and
methods. The core computational algorithms are implemented using the
'Eigen' C++ library for numerical linear algebra and 'RcppEigen' "glue".
Author: Douglas Bates [aut],
Martin Maechler [aut],
Ben Bolker [aut, cre],
Steven Walker [aut],
Rune Haubo Bojesen Christensen [ctb],
Henrik Singmann [ctb],
Bin Dai [ctb],
Fabian Scheipl [ctb],
Gabor Grothendieck [ctb],
Peter Green [ctb]
Maintainer: Ben Bolker <bbolker+lme4@gmail.com>
Diff between lme4 versions 1.1-17 dated 2018-04-03 and 1.1-18-1 dated 2018-08-17
lme4-1.1-17/lme4/R/bootMer.R |only lme4-1.1-17/lme4/tests/condVar.R |only lme4-1.1-18-1/lme4/DESCRIPTION | 6 lme4-1.1-18-1/lme4/MD5 | 92 - lme4-1.1-18-1/lme4/NAMESPACE | 14 lme4-1.1-18-1/lme4/R/AllClass.R | 12 lme4-1.1-18-1/lme4/R/bootMer.r |only lme4-1.1-18-1/lme4/R/checkConv.R | 4 lme4-1.1-18-1/lme4/R/lmList.R | 59 lme4-1.1-18-1/lme4/R/lmer.R | 1160 +++++++++---------- lme4-1.1-18-1/lme4/R/lmerControl.R | 156 +- lme4-1.1-18-1/lme4/R/modular.R | 81 - lme4-1.1-18-1/lme4/R/nbinom.R | 2 lme4-1.1-18-1/lme4/R/optimizer.R | 6 lme4-1.1-18-1/lme4/R/plot.R | 22 lme4-1.1-18-1/lme4/R/predict.R | 161 +- lme4-1.1-18-1/lme4/R/profile.R | 162 +- lme4-1.1-18-1/lme4/R/utilities.R | 316 +++-- lme4-1.1-18-1/lme4/R/vcconv.R | 4 lme4-1.1-18-1/lme4/inst/NEWS.Rd | 43 lme4-1.1-18-1/lme4/inst/utils/allFit.R | 7 lme4-1.1-18-1/lme4/man/devfun2.Rd |only lme4-1.1-18-1/lme4/man/glmer.Rd | 4 lme4-1.1-18-1/lme4/man/lmList.Rd | 8 lme4-1.1-18-1/lme4/man/lmer.Rd | 4 lme4-1.1-18-1/lme4/man/modular.Rd | 3 lme4-1.1-18-1/lme4/man/nlmer.Rd | 6 lme4-1.1-18-1/lme4/man/ranef.Rd | 90 - lme4-1.1-18-1/lme4/src/external.cpp | 255 ++-- lme4-1.1-18-1/lme4/src/glmFamily.cpp | 442 +++---- lme4-1.1-18-1/lme4/src/glmFamily.h | 216 +-- lme4-1.1-18-1/lme4/src/lme4CholmodDecomposition.h | 20 lme4-1.1-18-1/lme4/src/mcmcsamp.cpp | 360 ++--- lme4-1.1-18-1/lme4/src/mcmcsamp.h | 32 lme4-1.1-18-1/lme4/src/optimizer.cpp | 470 +++---- lme4-1.1-18-1/lme4/src/optimizer.h | 220 +-- lme4-1.1-18-1/lme4/src/predModule.cpp | 102 - lme4-1.1-18-1/lme4/src/predModule.h | 148 +- lme4-1.1-18-1/lme4/src/respModule.cpp | 188 +-- lme4-1.1-18-1/lme4/src/respModule.h | 168 +- lme4-1.1-18-1/lme4/tests/glmerWarn.R | 41 lme4-1.1-18-1/lme4/tests/lmList-tst.R | 9 lme4-1.1-18-1/lme4/tests/profile-tst.R | 32 lme4-1.1-18-1/lme4/tests/refit.R | 4 lme4-1.1-18-1/lme4/tests/simulate.R | 2 lme4-1.1-18-1/lme4/tests/testthat/test-formulaEval.R | 12 lme4-1.1-18-1/lme4/tests/testthat/test-glmer.R | 9 lme4-1.1-18-1/lme4/tests/testthat/test-methods.R | 68 + lme4-1.1-18-1/lme4/tests/testthat/test-ranef.R | 46 49 files changed, 2826 insertions(+), 2440 deletions(-)
Title: Random Forests for Survival, Regression, and Classification
(RF-SRC)
Description: Fast OpenMP parallel processing for Breiman's random forests for survival, competing risks, regression and classification based on Ishwaran and Kogalur's popular random survival forests (RSF) package. Handles missing data and now includes multivariate, unsupervised forests and quantile regression. New fast interface using subsampling.
Author: Hemant Ishwaran <hemant.ishwaran@gmail.com>, Udaya B. Kogalur <ubk@kogalur.com>
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>
Diff between randomForestSRC versions 2.6.1 dated 2018-05-18 and 2.7.0 dated 2018-08-17
DESCRIPTION | 12 MD5 | 104 NAMESPACE | 34 R/data.utilities.R | 267 +- R/generic.impute.rfsrc.R | 78 R/generic.predict.rfsrc.R | 279 +- R/impute.rfsrc.R | 153 - R/partial.rfsrc.R | 61 R/plot.competing.risk.rfsrc.R | 11 R/plot.rfsrc.R | 12 R/plot.subsample.rfsrc.R |only R/plot.variable.rfsrc.R | 143 - R/predict.rfsrc.R | 14 R/print.rfsrc.R | 77 R/quantileReg.rfsrc.R | 5 R/rfsrc.R | 248 +- R/rfsrcFast.rfsrc.R |only R/rfsrcSyn.rfsrc.R | 95 R/subsample.rfsrc.R |only R/tune.rfsrc.R |only R/utilities.R | 160 - R/var.select.rfsrc.R | 14 R/vimp.rfsrc.R | 37 configure | 18 configure.ac | 2 data/breast.rda |binary data/follic.rda |binary data/hd.rda |binary data/housing.rda |only data/nutrigenomic.rda |binary data/pbc.rda |binary data/vdv.rda |binary data/veteran.rda |binary data/wihs.rda |binary data/wine.rda |only inst/NEWS | 19 man/find.interaction.rfsrc.Rd | 2 man/housing.Rd |only man/impute.rfsrc.Rd | 86 man/nutrigenomic.Rd | 4 man/partial.rfsrc.Rd | 16 man/plot.competing.risk.rfsrc.Rd | 5 man/plot.rfsrc.Rd | 14 man/plot.subsample.rfsrc.Rd |only man/plot.survival.rfsrc.Rd | 2 man/plot.variable.rfsrc.Rd | 26 man/predict.rfsrc.Rd | 46 man/quantileReg.rfsrc.Rd | 36 man/randomForestSRC_package.Rd | 86 man/rfsrc.Rd | 637 ++--- man/rfsrcFast.Rd |only man/rfsrcSyn.Rd | 45 man/subsample.rfsrc.Rd |only man/tune.rfsrc.Rd |only man/var.select.rfsrc.Rd | 78 man/vimp.rfsrc.Rd | 43 man/wine.Rd |only src/randomForestSRC.c | 4786 ++++++++++++++++++--------------------- src/randomForestSRC.h | 294 +- 59 files changed, 4134 insertions(+), 3915 deletions(-)
More information about randomForestSRC at CRAN
Permanent link
Title: Pathway Enrichment Analysis Utilizing Active Subnetworks
Description: Pathway enrichment analysis enables researchers to uncover mechanisms
underlying the phenotype. pathfindR is a tool for pathway enrichment analysis
utilizing active subnetworks. It identifies active subnetworks in a
protein-protein interaction network using user-provided a list of genes.
It performs pathway enrichment analyses on the identified subnetworks.
pathfindR also offers functionalities to cluster enriched pathways and identify
representative pathways and to score the pathways per sample. The method is
described in detail in Ulgen E, Ozisik O, Sezerman OU. 2018. pathfindR: An R
Package for Pathway Enrichment Analysis Utilizing Active Subnetworks. bioRxiv.
<doi:10.1101/272450>.
Author: Ege Ulgen, Ozan Ozisik
Maintainer: Ege Ulgen <egeulgen@gmail.com>
Diff between pathfindR versions 1.2.0 dated 2018-06-10 and 1.2.1 dated 2018-08-17
DESCRIPTION | 12 - MD5 | 52 ++--- NAMESPACE | 1 NEWS.md | 15 + R/data.R | 19 +- R/input_processing.R | 124 +++++++------ R/pathmap.R | 1 R/pwd.R | 1 R/scores.R | 49 +++-- R/wrapper.R | 113 +++++++----- build/vignette.rds |binary data/RA_clustered.rda |binary data/RA_exp_mat.rda |binary data/RA_input.rda |binary data/RA_output.rda |binary data/custom_result.rda |only inst/doc/pathfindr_vignette.R | 43 ++++ inst/doc/pathfindr_vignette.Rmd | 65 ++++++ inst/doc/pathfindr_vignette.html | 366 ++++++++++++++++++++------------------- inst/extdata/CREB.txt |only inst/extdata/MYC.txt |only man/RA_clustered.Rd | 4 man/RA_exp_mat.Rd | 2 man/RA_input.Rd | 4 man/RA_output.Rd | 2 man/calculate_pwd.Rd | 3 man/custom_result.Rd |only man/run_pathfindR.Rd | 30 ++- vignettes/pathfindr_vignette.Rmd | 65 ++++++ 29 files changed, 616 insertions(+), 355 deletions(-)
Title: Analysis of the 'Elements of Metacommunity Structure'
Description: Functions to analyze coherence, boundary clumping, and turnover
following the pattern-based metacommunity analysis of Leibold and Mikkelson
2002 <doi:10.1034/j.1600-0706.2002.970210.x>. The package also includes
functions to visualize ecological networks, and to calculate modularity
as a replacement to boundary clumping.
Author: Tad Dallas [aut, cre],
Tom Pulliam [ctb]
Maintainer: Tad Dallas <tad.a.dallas@gmail.com>
Diff between metacom versions 1.5.0 dated 2018-01-20 and 1.5.1 dated 2018-08-17
DESCRIPTION | 14 +++++++++----- MD5 | 6 +++--- NEWS.md | 9 +++++++-- R/Metacommunity.R | 2 +- 4 files changed, 20 insertions(+), 11 deletions(-)
Title: AIRR Data Representation Reference Library
Description: Schema definitions and read, write and validation tools for data
formatted in accordance with the AIRR Data Representation schemas defined
by the AIRR Community <http://docs.airr-community.org>.
Author: Jason Vander Heiden [aut, cre],
Susanna Marquez [aut],
AIRR Community [cph]
Maintainer: Jason Vander Heiden <jason.vanderheiden@yale.edu>
Diff between airr versions 1.1.0 dated 2018-05-06 and 1.2.0 dated 2018-08-17
DESCRIPTION | 15 +- MD5 | 28 +-- NEWS.md | 8 + R/Interface.R | 23 +-- README.md | 4 build/vignette.rds |binary inst/doc/Usage-Vignette.R | 4 inst/doc/Usage-Vignette.Rmd | 35 ++-- inst/doc/Usage-Vignette.pdf |binary inst/extdata/airr-schema.yaml | 218 ++++++++++++------------------ inst/extdata/rearrangement-example.tsv.gz |binary man/Schema-class.Rd | 2 man/read_airr.Rd | 10 - man/write_airr.Rd | 15 +- vignettes/Usage-Vignette.Rmd | 35 ++-- 15 files changed, 189 insertions(+), 208 deletions(-)
Title: A Permutation Based Test for Biomarker Discovery in Microbiome
Data
Description: The permubiome R package was created to perform a permutation-based non-parametric analysis on microbiome data for biomarker discovery aims. This test executes thousands of comparisons in a pairwise manner, after a random shuffling of data into the different groups of study with prior selection of the microbiome features with the largest variation among groups. Previous to the permutation test itself, data can be normalized according to different methods proposed to handle microbiome data ('proportions', 'anders', and 'paulson'). The median-based differences between groups resulting from the multiple simulations are fitted to a normal distribution with the aim to calculate their significance. A multiple testing correction based on Benjamini-Hochberg method (fdr) is finally applied to extract the differentially presented features between groups of your dataset. LATEST UPDATES: v1.1 and olders incorporates function to parse BIOM-like format; v1.2 and olders incorporates "optimize" function to maximize evaluation of features with largest inter-class variation.
Author: Alfonso Benitez-Paez
Maintainer: Alfonso Benitez-Paez <abenitez@iata.csic.es>
Diff between permubiome versions 1.1 dated 2016-03-22 and 1.2 dated 2018-08-17
permubiome-1.1/permubiome/build |only permubiome-1.1/permubiome/man/permubiome.Rd |only permubiome-1.2/permubiome/DESCRIPTION | 12 +-- permubiome-1.2/permubiome/MD5 | 28 ++++---- permubiome-1.2/permubiome/NAMESPACE | 5 - permubiome-1.2/permubiome/R/get.data.R | 8 +- permubiome-1.2/permubiome/R/normalize.R | 15 +++- permubiome-1.2/permubiome/R/optimize.R |only permubiome-1.2/permubiome/R/permutation.R | 72 ++++++++++++++-------- permubiome-1.2/permubiome/R/plots.R | 36 +++++------ permubiome-1.2/permubiome/inst/extdat/DATA_1 | 6 - permubiome-1.2/permubiome/inst/extdat/DATA_2 | 16 ++--- permubiome-1.2/permubiome/man/get.data.Rd | 32 +++++----- permubiome-1.2/permubiome/man/normalize.Rd | 22 +++--- permubiome-1.2/permubiome/man/optimize.Rd |only permubiome-1.2/permubiome/man/permutation.Rd | 86 +++++++++++++++------------ permubiome-1.2/permubiome/man/plots.Rd | 2 17 files changed, 191 insertions(+), 149 deletions(-)
Title: Construct Reproducible Analytic Data Sets as R Packages
Description: A framework to help construct R data packages in a
reproducible manner. Potentially time consuming processing of
raw data sets into analysis ready data sets is done in a reproducible
manner and decoupled from the usual R CMD build process so that
data sets can be processed into R objects in the data package and
the data package can then be shared, built, and installed by others
without the need to repeat computationally costly data processing.
The package maintains data provenance by turning the data processing
scripts into package vignettes, as well as enforcing documentation
and version checking of included data objects. Data packages can be
version controlled in github, and used to share data for manuscripts,
collaboration and general reproducibility.
Author: Greg Finak [aut, cre, cph],
Paul Obrecht [ctb],
Kara Woo [rev] (Kara reviewed the package for ropensci, see
<https://github.com/ropensci/onboarding/issues/230>),
William Landau [rev] (William reviewed the package for ropensci, see
<https://github.com/ropensci/onboarding/issues/230>)
Maintainer: Greg Finak <gfinak@fredhutch.org>
Diff between DataPackageR versions 0.15.1 dated 2018-08-16 and 0.15.2 dated 2018-08-17
DESCRIPTION | 10 ++-- MD5 | 45 ++++++++++--------- NAMESPACE | 2 NEWS.md | 10 ++++ R/01.R | 2 R/autodoc.R | 1 R/dataversion.r | 4 - R/processData.R | 12 +++-- R/prompt.R | 41 +++++++++-------- R/skeleton.R | 75 +++++++++++++++---------------- R/use.R |only README.md | 10 ++-- inst/WORDLIST |only inst/doc/YAML_CONFIG.html | 18 +++---- inst/doc/usingDataPackageR.Rmd | 8 +-- inst/doc/usingDataPackageR.html | 80 +++++++++++++++++----------------- man/DataPackageR-package.Rd | 2 man/assert_data_version.Rd | 2 man/data_version.Rd | 2 man/use_raw_dataset.Rd |only tests/spelling.R |only tests/testthat/test-build-locations.R | 4 - tests/testthat/test-edge-cases.R | 13 +++-- tests/testthat/test-project-path.R | 2 tests/testthat/test-use_raw_data.R |only vignettes/usingDataPackageR.Rmd | 8 +-- 26 files changed, 190 insertions(+), 161 deletions(-)
Title: Covariance Matrix Tests
Description: Testing functions for Covariance Matrices. These tests include high-dimension homogeneity of covariance
matrix testing described by Schott (2007) <doi:10.1016/j.csda.2007.03.004> and high-dimensional one-sample tests of
covariance matrix structure described by Fisher, et al. (2010) <doi:10.1016/j.jmva.2010.07.004>. Covariance matrix
tests use C++ to speed performance and allow larger data sets.
Author: Ben Barnard [aut, cre],
Dean Young [aut]
Maintainer: Ben Barnard <ben_barnard@outlook.com>
Diff between covTestR versions 0.1.3 dated 2018-01-30 and 0.1.4 dated 2018-08-17
DESCRIPTION | 13 - MD5 | 66 +++++----- NAMESPACE | 102 +++++++-------- R/Ahmad2015.R | 210 ++++++++++++++++---------------- R/Ahmad2017.R | 98 +++++++------- R/BoxesM.R | 79 ++++++------ R/Chaipitak2013.R | 88 ++++++------- R/Chen2010.R | 208 +++++++++++++++---------------- R/DocumentHomogeneityStatistics.R | 82 ++++++------ R/DocumentStructureStatistics.R | 64 ++++----- R/Fisher2012.R | 249 ++++++++++++++++++-------------------- R/Ishii2016.R | 88 ++++++------- R/LedoitWolf2002.R | 208 +++++++++++++++---------------- R/Nagao1973.R | 220 ++++++++++++++++----------------- R/RcppExports.R | 126 +++++++++---------- R/Schott2001.R | 86 ++++++------- R/Schott2007.R | 88 ++++++------- R/Srivastava2005.R | 212 ++++++++++++++++---------------- R/Srivastava2007.R | 92 +++++++------- R/Srivastava2011.R | 230 +++++++++++++++++------------------ R/Srivastava2014.R | 86 ++++++------- R/SrivastavaYanagihara2010.R | 86 ++++++------- R/covTestR-package.R | 24 +-- R/helpers.R | 42 +++--- R/homogeneityCovariances.R | 199 +++++++++++++----------------- R/structureCovariances.R | 189 ++++++++++++---------------- man/covTestR-package.Rd | 28 ++-- man/homogeneityCovariances.Rd | 101 +++++++-------- man/homogeneityStatistics.Rd | 243 ++++++++++++++++++------------------- man/past.Rd | 24 +-- man/structureCovariances.Rd | 97 +++++++------- man/structureStatistics.Rd | 197 +++++++++++++++--------------- man/tr.Rd | 24 +-- src/Makevars | 11 - 34 files changed, 1959 insertions(+), 2001 deletions(-)
Title: Performs a BLP Demand Estimation
Description: Provides the estimation algorithm to perform the demand estimation described in Berry, Levinsohn and Pakes (1995) <DOI:10.2307/2171802> . The routine uses analytic gradients and offers a large number of implemented integration methods and optimization routines.
Author: Daniel Brunner (aut), Constantin Weiser (ctr), Andre Romahn (ctr)
Maintainer: Daniel Brunner <daniel.brunner@hhu.de>
Diff between BLPestimatoR versions 0.2.3 dated 2018-08-16 and 0.2.4 dated 2018-08-17
DESCRIPTION | 6 MD5 | 26 R/BLP_data.R | 1012 +++++++++++++++++------------------ R/estimateBLP.R | 648 +++++++++++----------- R/get_BLP_dataset.R | 442 +++++++-------- R/get_elasticities.R | 496 ++++++++--------- R/gmm.R | 288 +++++----- R/helperFunctions.R | 594 ++++++++++---------- R/nevo.R | 144 ++--- R/wrappers.R | 1374 ++++++++++++++++++++++++------------------------ inst/doc/blp_intro.Rmd | 834 ++++++++++++++--------------- inst/doc/blp_intro.html | 4 src/cppFunctions.cpp | 5 vignettes/blp_intro.Rmd | 834 ++++++++++++++--------------- 14 files changed, 3354 insertions(+), 3353 deletions(-)
Title: Simulate Pedigrees Ascertained for a Rare Disease
Description: Routines to simulate and manipulate pedigrees ascertained to
contain multiple family members affected by a rare disease.
Christina Nieuwoudt, Samantha J Jones, Angela Brooks-Wilson,
and Jinko Graham (2017) <doi:10.1101/234153>.
Author: Christina Nieuwoudt [aut, cre],
Jinko Graham [aut]
Maintainer: Christina Nieuwoudt <cnieuwou@sfu.ca>
Diff between SimRVPedigree versions 0.1.0 dated 2017-12-21 and 0.2.0 dated 2018-08-17
DESCRIPTION | 8 - MD5 | 45 +++---- NAMESPACE | 2 R/Check_DF_Ped.R | 2 R/ManipulatePed_Functions.R | 62 +++------ R/RVPedSim_Functions.R | 70 ++++++++--- R/Utility_Functions.R | 124 +++++++++++++++++++ build/vignette.rds |binary inst/doc/SimRVPedigree.Rmd | 19 +-- inst/doc/SimRVPedigree.html | 219 ++++++++++++++++++++++++++++++++--- man/ascertainTrim_ped.Rd | 4 man/ascertain_ped.Rd | 5 man/choose_proband.Rd | 4 man/disqualify_ped.Rd | 6 man/find_available_parent.Rd |only man/find_mrca.Rd |only man/sim_RVped.Rd | 6 tests/testthat/test_ascertain_ped.R | 2 tests/testthat/test_choose_proband.R | 6 tests/testthat/test_disqualify_ped.R | 24 ++- tests/testthat/test_find_mcra.R |only tests/testthat/test_reassign_gen.R | 110 ++++++++++++----- tests/testthat/test_sim_RVped.R | 21 +++ tests/testthat/test_sim_life.R | 23 ++- vignettes/SimRVPedigree.Rmd | 19 +-- 25 files changed, 615 insertions(+), 166 deletions(-)
Title: Techniques for Automated Classifiers
Description: A set of techniques that can be used to develop, validate, and implement automated classifiers. A powerful tool for transforming raw data into meaningful information, 'ncodeR' (Shaffer, D. W. (2017) Quantitative Ethnography. ISBN: 0578191687) is designed specifically for working with big data: large document collections, logfiles, and other text data.
Author: Cody L Marquart [aut, cre],
Zachari Swiecki [aut],
Brendan Eagan [aut],
David Williamson Shaffer [aut]
Maintainer: Cody L Marquart <cody.marquart@wisc.edu>
Diff between ncodeR versions 0.1.0 dated 2018-06-19 and 0.1.1 dated 2018-08-17
ncodeR-0.1.0/ncodeR/demo/backup |only ncodeR-0.1.1/ncodeR/DESCRIPTION | 14 ++++---- ncodeR-0.1.1/ncodeR/LICENSE |only ncodeR-0.1.1/ncodeR/MD5 | 38 ++++++++++-------------- ncodeR-0.1.1/ncodeR/R/Code.R | 14 +++----- ncodeR-0.1.1/ncodeR/R/CodeSet.R | 3 + ncodeR-0.1.1/ncodeR/R/RS.data.R | 2 - ncodeR-0.1.1/ncodeR/R/Test.R | 11 +++--- ncodeR-0.1.1/ncodeR/R/autocode.R | 52 +++++++++++++++++++-------------- ncodeR-0.1.1/ncodeR/R/differences.R | 1 ncodeR-0.1.1/ncodeR/R/handcode.R | 32 +------------------- ncodeR-0.1.1/ncodeR/R/resolve.R | 8 ++--- ncodeR-0.1.1/ncodeR/R/zzz.R | 1 ncodeR-0.1.1/ncodeR/inst |only ncodeR-0.1.1/ncodeR/man/CodeSet.Rd | 2 + ncodeR-0.1.1/ncodeR/man/RS.data.Rd | 2 - ncodeR-0.1.1/ncodeR/man/autocode.Rd | 4 +- ncodeR-0.1.1/ncodeR/man/differences.Rd | 2 + ncodeR-0.1.1/ncodeR/man/handcode.Rd | 33 ++------------------ 19 files changed, 90 insertions(+), 129 deletions(-)
Title: Interface to 'JSON-stat'
Description: Interface to 'JSON-stat' <https://json-stat.org/>,
a simple lightweight 'JSON' format for data dissemination.
Author: Kim Seonghyun [aut, cre]
Maintainer: Kim Seonghyun <zedoul@gmail.com>
Diff between jsonstat versions 0.0.1 dated 2018-08-02 and 0.0.2 dated 2018-08-17
jsonstat-0.0.1/jsonstat/man/as.jsonstat.Rd |only jsonstat-0.0.1/jsonstat/man/as.jsonstat.jsonstat.collection.Rd |only jsonstat-0.0.1/jsonstat/man/as.jsonstat.jsonstat.dataset.Rd |only jsonstat-0.0.2/jsonstat/DESCRIPTION | 6 - jsonstat-0.0.2/jsonstat/MD5 | 43 +++++----- jsonstat-0.0.2/jsonstat/NAMESPACE | 7 - jsonstat-0.0.2/jsonstat/R/S3.R | 7 + jsonstat-0.0.2/jsonstat/R/compress.R | 16 +++ jsonstat-0.0.2/jsonstat/R/jsonstat-collection.R | 12 ++ jsonstat-0.0.2/jsonstat/R/jsonstat-dataset.R | 10 +- jsonstat-0.0.2/jsonstat/R/jsonstat.R | 18 ++-- jsonstat-0.0.2/jsonstat/R/util.R | 17 +++ jsonstat-0.0.2/jsonstat/inst/doc/quickstart.R | 2 jsonstat-0.0.2/jsonstat/inst/doc/quickstart.Rmd | 2 jsonstat-0.0.2/jsonstat/inst/doc/quickstart.html | 2 jsonstat-0.0.2/jsonstat/man/as.collection.Rd | 5 - jsonstat-0.0.2/jsonstat/man/as.dataset.Rd | 5 - jsonstat-0.0.2/jsonstat/man/autounbox.Rd |only jsonstat-0.0.2/jsonstat/man/toJSON.Rd |only jsonstat-0.0.2/jsonstat/man/toJSON.jsonstat.collection.Rd |only jsonstat-0.0.2/jsonstat/man/toJSON.jsonstat.dataset.Rd |only jsonstat-0.0.2/jsonstat/tests/testthat/input/galicia.json |only jsonstat-0.0.2/jsonstat/tests/testthat/test-collection.R |only jsonstat-0.0.2/jsonstat/tests/testthat/test-compress.R | 4 jsonstat-0.0.2/jsonstat/tests/testthat/test-galicia.R | 7 - jsonstat-0.0.2/jsonstat/tests/testthat/test-util.R | 18 +++- jsonstat-0.0.2/jsonstat/vignettes/quickstart.Rmd | 2 27 files changed, 126 insertions(+), 57 deletions(-)
Title: Empirical Likelihood Ratio for Censored/Truncated Data
Description: Empirical likelihood ratio tests for means/quantiles/hazards
from possibly censored and/or truncated data. Now does regression too.
This version contains some C code.
Author: Mai Zhou. (Art Owen for el.test(). Yifan Yang for C code.)
Maintainer: Mai Zhou <mai@ms.uky.edu>
Diff between emplik versions 1.0-3.1 dated 2018-08-05 and 1.0-4.3 dated 2018-08-17
DESCRIPTION | 9 ++++--- MD5 | 20 ++++++++++------ NAMESPACE | 8 +++--- R/findUL.R | 63 ++++++++++++++++++++++++++------------------------- R/findUL2.R |only R/findULold.R |only man/WRegEst.Rd | 1 man/el.cen.EM2.Rd | 66 ++++++++++++++++++++++++++++++++++++++++++++++++++++++ man/findUL.Rd | 7 ----- man/findUL2.Rd |only man/findULold.Rd |only src/cumsumsurv.c | 23 +++++++++++------- src/foo.h |only src/init.c |only 14 files changed, 135 insertions(+), 62 deletions(-)
Title: An R Implementation of the FIS MarketMap C-Toolkit
Description: Complete access from 'R' to the FIS 'MarketMap
C-Toolkit' ('FAME C-HLI'). 'FAME' is a fully integrated software and database
management system from FIS that provides the following capabilities:
Time series and cross-sectional data management;
Financial calculation, data analysis, econometrics, and forecasting;
Table generation and detailed multicolor, presentation-quality report writing;
Multicolor, presentation-quality graphics;
"What-if" analysis;
Application development and structured programming;
Data transfer to and from other applications;
Tools for building customized graphical user interfaces.
Author: Kevin Keane [aut, cre],
Qoma LLC [cph]
Maintainer: Kevin Keane <krkeane@qoma.io>
Diff between rhli versions 0.0.1 dated 2018-07-18 and 0.0.2 dated 2018-08-17
DESCRIPTION | 12 MD5 | 1045 +- NAMESPACE | 1022 +- NEWS.md |only R/rhli.R |13651 +++++++++++++++---------------- README.md | 28 inst/examples/0-hello-rhli.Rmd | 126 inst/examples/HelloWorld.R | 52 man/Character-class.Rd | 52 man/HABORT.Rd | 28 man/HAFRI.Rd | 28 man/HAFTER.Rd | 28 man/HALL.Rd | 28 man/HAMON.Rd | 28 man/HANAPR.Rd | 28 man/HANAUG.Rd | 28 man/HANDEC.Rd | 28 man/HANFEB.Rd | 28 man/HANJAN.Rd | 28 man/HANJUL.Rd | 28 man/HANJUN.Rd | 28 man/HANMAR.Rd | 28 man/HANMAY.Rd | 28 man/HANNOV.Rd | 28 man/HANOCT.Rd | 28 man/HANSEP.Rd | 28 man/HAPOST.Rd | 28 man/HAPPY.Rd | 28 man/HAPR.Rd | 28 man/HASAT.Rd | 28 man/HASUN.Rd | 28 man/HATHU.Rd | 28 man/HATUE.Rd | 28 man/HAUG.Rd | 28 man/HAWED.Rd | 28 man/HAYPP.Rd | 28 man/HBADVAL.Rd | 28 man/HBASRT.Rd | 28 man/HBATTR.Rd | 28 man/HBATYP.Rd | 28 man/HBBASI.Rd | 28 man/HBCLAS.Rd | 28 man/HBCNTX.Rd | 28 man/HBCONN.Rd | 28 man/HBCPU.Rd | 28 man/HBDATE.Rd | 28 man/HBDAY.Rd | 28 man/HBEFOR.Rd | 28 man/HBEGIN.Rd | 28 man/HBERNG.Rd | 28 man/HBFILE.Rd | 28 man/HBFLAB.Rd | 28 man/HBFLAG.Rd | 28 man/HBFMON.Rd | 28 man/HBFREQ.Rd | 28 man/HBFRI.Rd | 28 man/HBFUNC.Rd | 28 man/HBGLNM.Rd | 28 man/HBGROW.Rd | 28 man/HBGRP.Rd | 28 man/HBIMON.Rd | 28 man/HBINDX.Rd | 28 man/HBKEY.Rd | 28 man/HBLEN.Rd | 28 man/HBMISS.Rd | 28 man/HBMNOV.Rd | 28 man/HBMODE.Rd | 28 man/HBMON.Rd | 28 man/HBMONT.Rd | 28 man/HBNCHR.Rd | 28 man/HBNRNG.Rd | 28 man/HBOBJT.Rd | 28 man/HBOBSV.Rd | 28 man/HBOOLN.Rd | 28 man/HBOPT.Rd | 28 man/HBOPTV.Rd | 28 man/HBPER.Rd | 28 man/HBPHAS.Rd | 28 man/HBPROD.Rd | 28 man/HBPRSP.Rd | 28 man/HBREL.Rd | 28 man/HBRNG.Rd | 28 man/HBSAT.Rd | 28 man/HBSBUS.Rd | 28 man/HBSDAY.Rd | 28 man/HBSEL.Rd | 28 man/HBSRNG.Rd | 28 man/HBSRVR.Rd | 28 man/HBSUN.Rd | 28 man/HBSUND.Rd | 28 man/HBTHU.Rd | 28 man/HBTIME.Rd | 28 man/HBTUE.Rd | 28 man/HBTYPE.Rd | 28 man/HBUNIT.Rd | 28 man/HBUSER.Rd | 28 man/HBUSNS.Rd | 28 man/HBV3DATE.Rd | 28 man/HBV3RANGE.Rd | 28 man/HBV3TYPE.Rd | 28 man/HBVER.Rd | 28 man/HBWED.Rd | 28 man/HBYEAR.Rd | 28 man/HCASEX.Rd | 28 man/HCEXI.Rd | 28 man/HCHANL.Rd | 28 man/HCHGAC.Rd | 28 man/HCLCHN.Rd | 28 man/HCLNLM.Rd | 28 man/HCLNT.Rd | 28 man/HCMODE.Rd | 28 man/HCONT.Rd | 28 man/HCVTDB.Rd | 28 man/HDAILY.Rd | 28 man/HDATE.Rd | 28 man/HDBCLM.Rd | 28 man/HDEC.Rd | 28 man/HDHOST.Rd | 28 man/HDMODE.Rd | 28 man/HDPRMC.Rd | 28 man/HDUP.Rd | 28 man/HDUTAR.Rd | 28 man/HEND.Rd | 28 man/HEXPIR.Rd | 28 man/HFAMER.Rd | 28 man/HFEB.Rd | 28 man/HFIN.Rd | 28 man/HFMENV.Rd | 28 man/HFRI.Rd | 28 man/HFRMLA.Rd | 28 man/HFRMSYNTAXERR.Rd | 28 man/HFTOUT.Rd | 28 man/HFUSE.Rd | 28 man/HFUTURE_TYPE.Rd | 28 man/HFYAPR.Rd | 28 man/HFYAUG.Rd | 28 man/HFYAUT.Rd | 28 man/HFYDEC.Rd | 28 man/HFYFEB.Rd | 28 man/HFYFST.Rd | 28 man/HFYJAN.Rd | 28 man/HFYJUL.Rd | 28 man/HFYJUN.Rd | 28 man/HFYLST.Rd | 28 man/HFYMAR.Rd | 28 man/HFYMAY.Rd | 28 man/HFYNOV.Rd | 28 man/HFYOCT.Rd | 28 man/HFYSEP.Rd | 28 man/HGLFOR.Rd | 28 man/HGLNAM.Rd | 28 man/HHOUR.Rd | 28 man/HIFAIL.Rd | 28 man/HINITD.Rd | 28 man/HINTVL.Rd | 28 man/HINUSE.Rd | 28 man/HJAN.Rd | 28 man/HJUL.Rd | 28 man/HJUN.Rd | 28 man/HLICFL.Rd | 28 man/HLICNS.Rd | 28 man/HLI_MAX_FAME_CMD.Rd | 28 man/HLI_MAX_FAME_INPUT.Rd | 28 man/HLI_MAX_FAME_INPUT_SIZE.Rd | 28 man/HLI_MAX_STR_LEN.Rd | 28 man/HLOCKD.Rd | 28 man/HLRESV.Rd | 28 man/HLSERV.Rd | 28 man/HMAR.Rd | 28 man/HMAXDB.Rd | 28 man/HMAXSCMD.Rd | 28 man/HMAY.Rd | 28 man/HMFILE.Rd | 28 man/HMGVAL.Rd | 28 man/HMIN.Rd | 28 man/HMON.Rd | 28 man/HMONTH.Rd | 28 man/HMPOST.Rd | 28 man/HMSEC.Rd | 28 man/HNAMEL.Rd | 28 man/HNAMLEN.Rd | 28 man/HNAMLEN_V3.Rd | 28 man/HNAMLEN_V4.Rd | 28 man/HNAMSIZ.Rd | 28 man/HNAVAL.Rd | 28 man/HNBACK.Rd | 28 man/HNCONN.Rd | 28 man/HNCVAL.Rd | 28 man/HNDVAL.Rd | 28 man/HNEMPT.Rd | 28 man/HNETCN.Rd | 28 man/HNFAME.Rd | 28 man/HNFILE.Rd | 28 man/HNFMDB.Rd | 28 man/HNFSRCLONG.Rd | 28 man/HNINIT.Rd | 28 man/HNLALL.Rd | 28 man/HNLOCL.Rd | 28 man/HNMCA.Rd | 28 man/HNMVAL.Rd | 28 man/HNO.Rd | 28 man/HNOFORMV3.Rd | 28 man/HNOMAP.Rd | 28 man/HNOMEM.Rd | 28 man/HNOOBJ.Rd | 28 man/HNOV.Rd | 28 man/HNPOST.Rd | 28 man/HNRESW.Rd | 28 man/HNSUPDB.Rd | 28 man/HNSUPP.Rd | 28 man/HNTMIS.Rd | 28 man/HNTOOLONG.Rd | 28 man/HNTSAFE.Rd | 28 man/HNTWIC.Rd | 28 man/HNUFRD.Rd | 28 man/HNULLP.Rd | 28 man/HNUMRC.Rd | 28 man/HNWFEA.Rd | 28 man/HNWILD.Rd | 28 man/HOBANN.Rd | 28 man/HOBAVG.Rd | 28 man/HOBBEG.Rd | 28 man/HOBEND.Rd | 28 man/HOBFRM.Rd | 28 man/HOBHI.Rd | 28 man/HOBJSIZE.Rd | 28 man/HOBLO.Rd | 28 man/HOBSFUNC.Rd | 28 man/HOBSUM.Rd | 28 man/HOBUND.Rd | 28 man/HOCT.Rd | 28 man/HOEXI.Rd | 28 man/HOLDDB.Rd | 28 man/HOMODE.Rd | 28 man/HOPEND.Rd | 28 man/HOPENW.Rd | 28 man/HP1REQ.Rd | 28 man/HP2REQ.Rd | 28 man/HPACK.Rd | 28 man/HPRECN.Rd | 28 man/HPWWOU.Rd | 28 man/HQTDEC.Rd | 28 man/HQTNOV.Rd | 28 man/HQTOCT.Rd | 28 man/HQUOTA.Rd | 28 man/HRDISTRANS.Rd | 28 man/HREAD.Rd | 28 man/HREADO.Rd | 28 man/HREMSUP.Rd | 28 man/HRESFD.Rd | 28 man/HRHANDINV.Rd | 28 man/HRKEYINV.Rd | 28 man/HRMKEY.Rd | 28 man/HRMODE.Rd | 28 man/HRMTDB.Rd | 28 man/HRNEXI.Rd | 28 man/HROSCONN.Rd | 28 man/HROSTRANS.Rd | 28 man/HRUSERINV.Rd | 28 man/HSAT.Rd | 28 man/HSCALA.Rd | 28 man/HSCLLM.Rd | 28 man/HSEC.Rd | 28 man/HSEP.Rd | 28 man/HSERIE.Rd | 28 man/HSERVR.Rd | 28 man/HSMAUG.Rd | 28 man/HSMDEC.Rd | 28 man/HSMFIL.Rd | 28 man/HSMJUL.Rd | 28 man/HSMLEN.Rd | 28 man/HSMNOV.Rd | 28 man/HSMOCT.Rd | 28 man/HSMODE.Rd | 28 man/HSMSEP.Rd | 28 man/HSNFIL.Rd | 28 man/HSPCDB.Rd | 28 man/HSRVST.Rd | 28 man/HSTRNG.Rd | 28 man/HSUCC.Rd | 44 man/HSUN.Rd | 28 man/HSUSPN.Rd | 28 man/HTENDA.Rd | 28 man/HTHU.Rd | 28 man/HTMIS.Rd | 28 man/HTMOUT.Rd | 28 man/HTRUNC.Rd | 28 man/HTRUNCDB.Rd | 28 man/HTUE.Rd | 28 man/HTWICM.Rd | 28 man/HUMODE.Rd | 28 man/HUNCHG.Rd | 28 man/HUNDFT.Rd | 28 man/HUNDFX.Rd | 28 man/HUNEXP.Rd | 28 man/HUNSUPPORTED_FAME_VER.Rd | 28 man/HUPDRD.Rd | 28 man/HUSRPWTOOLONG.Rd | 28 man/HUTOOLONG.Rd | 28 man/HWAFRI.Rd | 28 man/HWAMON.Rd | 28 man/HWASAT.Rd | 28 man/HWASUN.Rd | 28 man/HWATHU.Rd | 28 man/HWATUE.Rd | 28 man/HWAWED.Rd | 28 man/HWBFRI.Rd | 28 man/HWBMON.Rd | 28 man/HWBSAT.Rd | 28 man/HWBSUN.Rd | 28 man/HWBTHU.Rd | 28 man/HWBTUE.Rd | 28 man/HWBWED.Rd | 28 man/HWED.Rd | 28 man/HWEEK_PATTERN.Rd | 28 man/HWKFRI.Rd | 28 man/HWKMON.Rd | 28 man/HWKOPN.Rd | 28 man/HWKSAT.Rd | 28 man/HWKSUN.Rd | 28 man/HWKTHU.Rd | 28 man/HWKTUE.Rd | 28 man/HWKWED.Rd | 28 man/HWMODE.Rd | 28 man/HWRITE.Rd | 28 man/HYES.Rd | 28 man/Integer-class.Rd | 52 man/Numeric-class.Rd | 52 man/cfmabrt.Rd | 32 man/cfmalob.Rd | 70 man/cfmasrt.Rd | 53 man/cfmbwdy.Rd | 40 man/cfmchfr.Rd | 52 man/cfmclcn.Rd | 32 man/cfmcldb.Rd | 32 man/cfmcmmt.Rd | 32 man/cfmcpob.Rd | 44 man/cfmdatd.Rd | 48 man/cfmdatf.Rd | 52 man/cfmdati.Rd | 52 man/cfmdatl.Rd | 48 man/cfmdatp.Rd | 44 man/cfmdatt.Rd | 52 man/cfmddat.Rd | 48 man/cfmddes.Rd | 36 man/cfmddoc.Rd | 36 man/cfmdlen.Rd | 44 man/cfmdlob.Rd | 36 man/cfmexpiration.Rd | 32 man/cfmfame.Rd | 32 man/cfmfdat.Rd | 52 man/cfmfdiv.Rd | 40 man/cfmferr.Rd | 32 man/cfmfin.Rd | 38 man/cfmgcid.Rd | 36 man/cfmgdat.Rd | 48 man/cfmgdba.Rd | 64 man/cfmgdbd.Rd | 44 man/cfmget_dimension.Rd | 36 man/cfmget_extradots.Rd | 36 man/cfmglen.Rd | 40 man/cfmgnam.Rd | 40 man/cfmgsln.Rd | 40 man/cfmgtali.Rd | 48 man/cfmgtaso.Rd | 48 man/cfmgtatt_char.Rd | 56 man/cfmgtatt_double.Rd | 57 man/cfmgtatt_float.Rd | 56 man/cfmgtatt_int.Rd | 56 man/cfmgtnl.Rd | 52 man/cfmgtstr.Rd | 56 man/cfmgtsts.Rd | 56 man/cfmidat.Rd | 56 man/cfmini.Rd | 38 man/cfminwc.Rd | 36 man/cfmisbm.Rd | 36 man/cfmisdm.Rd | 36 man/cfmislp.Rd | 36 man/cfmisnm.Rd | 36 man/cfmispm.Rd | 36 man/cfmissm.Rd | 36 man/cfmlali.Rd | 40 man/cfmlaso.Rd | 40 man/cfmlatt.Rd | 48 man/cfmldat.Rd | 52 man/cfmlerr.Rd | 32 man/cfmlsts.Rd | 44 man/cfmncnt.Rd | 40 man/cfmnlen.Rd | 44 man/cfmnwob.Rd | 56 man/cfmnxwc.Rd | 48 man/cfmopcn.Rd | 48 man/cfmopdb.Rd | 40 man/cfmopdc.Rd | 44 man/cfmoprc.Rd | 36 man/cfmopre.Rd | 36 man/cfmopwk.Rd | 32 man/cfmosiz.Rd | 64 man/cfmpack.Rd | 32 man/cfmpdat.Rd | 44 man/cfmpfrq.Rd | 48 man/cfmpind.Rd | 36 man/cfmpinm.Rd | 44 man/cfmpiny.Rd | 40 man/cfmpodb.Rd | 32 man/cfmrdfa_double.Rd | 66 man/cfmrdfa_float.Rd | 66 man/cfmrdfa_int.Rd | 66 man/cfmrdfm.Rd | 48 man/cfmrmev.Rd | 48 man/cfmrnob.Rd | 40 man/cfmrrng_double.Rd | 52 man/cfmrrng_float.Rd | 52 man/cfmrrng_int.Rd | 52 man/cfmrsdb.Rd | 32 man/cfmsali.Rd | 40 man/cfmsaso.Rd | 40 man/cfmsatt_char.Rd | 48 man/cfmsatt_double.Rd | 48 man/cfmsatt_float.Rd | 48 man/cfmsatt_int.Rd | 48 man/cfmsbas.Rd | 40 man/cfmsbm.Rd | 44 man/cfmsdes.Rd | 40 man/cfmsdm.Rd | 44 man/cfmsdoc.Rd | 40 man/cfmset_dimension.Rd | 36 man/cfmset_extradots.Rd | 36 man/cfmsfis.Rd | 65 man/cfmsinp.Rd | 32 man/cfmsnm.Rd | 44 man/cfmsobs.Rd | 40 man/cfmsopt.Rd | 36 man/cfmspm.Rd | 44 man/cfmspos.Rd | 32 man/cfmsrng.Rd | 56 man/cfmssln.Rd | 40 man/cfmtdat.Rd | 52 man/cfmtody.Rd | 36 man/cfmufrq.Rd | 48 man/cfmver.Rd | 46 man/cfmwhat.Rd | 106 man/cfmwkdy.Rd | 40 man/cfmwrmt_double.Rd | 56 man/cfmwrmt_float.Rd | 56 man/cfmwrmt_int.Rd | 56 man/cfmwrng_double.Rd | 52 man/cfmwrng_float.Rd | 52 man/cfmwrng_int.Rd | 52 man/cfmwstr.Rd | 52 man/cfmwsts.Rd | 52 man/cfmwtnl.Rd | 44 man/fame_biweekday.Rd | 36 man/fame_create_formula.Rd | 36 man/fame_create_global_formula.Rd | 36 man/fame_current_time.Rd | 32 man/fame_date_missing_type.Rd | 32 man/fame_date_to_literal.Rd | 53 man/fame_dateof.Rd | 48 man/fame_day_to_index.Rd | 48 man/fame_dimchar.Rd | 32 man/fame_dimnum.Rd | 32 man/fame_expiration_date.Rd | 28 man/fame_format_date.Rd | 58 man/fame_free_wildcard.Rd | 28 man/fame_get_base_frequency.Rd | 32 man/fame_get_boolean_attribute.Rd | 40 man/fame_get_booleans.Rd | 40 man/fame_get_date_attribute.Rd | 44 man/fame_get_dates.Rd | 40 man/fame_get_db_dates.Rd | 36 man/fame_get_dbversion.Rd | 32 man/fame_get_namelist_attribute.Rd | 48 man/fame_get_next_wildcard.Rd | 62 man/fame_get_numeric_attribute.Rd | 40 man/fame_get_numerics.Rd | 40 man/fame_get_precision_attribute.Rd | 40 man/fame_get_precisions.Rd | 40 man/fame_get_range_numobs.Rd | 32 man/fame_get_real_name.Rd | 44 man/fame_get_server_input.Rd | 36 man/fame_get_string_attribute.Rd | 48 man/fame_get_strings.Rd | 48 man/fame_index_to_day.Rd | 44 man/fame_index_to_int.Rd | 36 man/fame_index_to_time.Rd | 62 man/fame_index_to_year_period.Rd | 40 man/fame_info.Rd | 94 man/fame_init_range_from_end_numobs.Rd | 40 man/fame_init_range_from_indexes.Rd | 40 man/fame_init_range_from_start_numobs.Rd | 40 man/fame_init_wildcard.Rd | 44 man/fame_int_to_index.Rd | 36 man/fame_len_strings.Rd | 40 man/fame_literal_to_date.Rd | 48 man/fame_modify_formula.Rd | 36 man/fame_parse_frequency.Rd | 32 man/fame_quick_info.Rd | 52 man/fame_remexec.Rd | 40 man/fame_scan_date.Rd | 52 man/fame_set_boolean_attribute.Rd | 40 man/fame_set_date_attribute.Rd | 44 man/fame_set_namelist_attribute.Rd | 40 man/fame_set_numeric_attribute.Rd | 40 man/fame_set_precision_attribute.Rd | 40 man/fame_set_string_attribute.Rd | 40 man/fame_time_to_index.Rd | 66 man/fame_type_to_string.Rd | 40 man/fame_weekday.Rd | 36 man/fame_write_booleans.Rd | 40 man/fame_write_dates.Rd | 44 man/fame_write_numerics.Rd | 40 man/fame_write_precisions.Rd | 40 man/fame_write_strings.Rd | 40 man/fame_year_period_to_index.Rd | 40 man/rhli.Rd | 80 src/Makevars | 2 src/Makevars.win | 2 src/chli.c | 784 + src/qoma-hli.c |only src/qoma-hli.h |only src/rhli.c | 1379 +-- src/rhli.h | 299 tests/testthat.R | 8 tests/testthat/test-cfmini.R | 40 525 files changed, 18294 insertions(+), 17538 deletions(-)
Title: Local Projections Impulse Response Functions
Description: Contains functions to estimate linear and nonlinear impulse
responses based on local projections by Jordà (2005) <doi:10.1257/0002828053828518>.
Nonlinear impulse responses are estimated for two regimes based on
a transition function as used in Auerbach and Gorodnichenko (2012) <doi:10.1257/pol.4.2.1>.
Author: Philipp Adämmer [aut, cre] (<https://orcid.org/0000-0003-3770-0097>),
James P. LeSage [ctb],
Mehmet. Balcilar [ctb]
Maintainer: Philipp Adämmer <adaemmer@hsu-hh.de>
Diff between lpirfs versions 0.1.1 dated 2018-07-11 and 0.1.2 dated 2018-08-17
DESCRIPTION | 10 - MD5 | 99 ++++++---- NAMESPACE | 5 NEWS.md | 32 +++ R/RcppExports.R | 62 +++++- R/create_lags.R | 6 R/create_lin_data.R | 207 ++++++++++++++++----- R/create_nl_data.R | 279 +++++++++++++++++++++-------- R/data-documentation.R | 44 ++++ R/get_mat_chol.R | 33 --- R/get_vals_switching.R | 6 R/get_var_lagcrit.R |only R/lp_lin.R | 222 +++++++++++++++++------ R/lp_lin_iv.R |only R/lp_nl.R | 323 ++++++++++++++++++++++------------ R/lp_nl_iv.R |only R/package.R | 5 R/plot_lin.R |only R/plot_lin_irfs.R | 73 ------- R/plot_nl.R |only R/plot_nl_irfs.R | 123 ------------ R/zzz.R | 3 README.md | 58 ++++-- data/ag_data.RData |only man/ag_data.Rd |only man/create_lags.Rd | 2 man/create_lin_data.Rd | 10 - man/create_nl_data.Rd | 12 - man/get_mat_chol.Rd | 4 man/get_vals_lagcrit.Rd | 10 - man/get_vals_switching.Rd | 2 man/get_var_lagcrit.Rd |only man/hp_filter.Rd | 47 ++++ man/interest_rules_var_data.Rd | 4 man/lp_lin.Rd | 135 ++++++++++---- man/lp_lin_iv.Rd |only man/lp_nl.Rd | 187 ++++++++++++++----- man/lp_nl_iv.Rd |only man/lpirfs-package.Rd | 4 man/monetary_var_data.Rd | 4 man/newey_west.Rd | 6 man/plot_lin.Rd |only man/plot_lin_irfs.Rd | 27 -- man/plot_nl.Rd |only man/plot_nl_irfs.Rd | 42 ---- src/Makevars | 7 src/Makevars.win | 4 src/RcppExports.cpp | 9 src/get_vals_lagcrit.cpp | 33 ++- src/hp_filter.cpp | 42 ++++ src/newey_west.cpp | 4 tests/testthat/test-get_var_lagcrit.R |only tests/testthat/test-hp_filter.R | 2 tests/testthat/test-lp_lin.R | 292 +++++++++--------------------- tests/testthat/test-lp_lin_iv.R |only tests/testthat/test-lp_nl.R | 154 ++++++++-------- tests/testthat/test-lp_nl_iv.R |only tests/testthat/test-plot_lin.R |only tests/testthat/test-plot_nl.R |only 59 files changed, 1573 insertions(+), 1060 deletions(-)
Title: Statistics and Metrics for Seismic Data
Description: Classes and functions for metrics calculation as part of the
'IRIS DMC MUSTANG' project. The functionality in this package
builds upon the base classes of the 'IRISSeismic' package.
Metrics include basic statistics as well as higher level
'health' metrics that can help identify problematic seismometers.
Author: Jonathan Callahan [aut],
Rob Casey [aut],
Mary Templeton [aut],
Gillian Sharer [aut, cre]
Maintainer: Gillian Sharer <gillian@iris.washington.edu>
Diff between IRISMustangMetrics versions 2.1.0 dated 2018-03-14 and 2.1.1 dated 2018-08-17
DESCRIPTION | 6 ++--- MD5 | 16 +++++++------- R/PSDMetric.R | 41 ++++++++++++++++++++------------------ R/dailyDCOffsetMetric.R | 3 -- man/IRISMustangMetrics-package.Rd | 7 +++++- man/PSDMetric.Rd | 4 +-- man/SNRMetric.Rd | 2 + man/crossCorrelationMetric.Rd | 2 + man/getGeneralValueMetrics.Rd | 2 + 9 files changed, 48 insertions(+), 35 deletions(-)
More information about IRISMustangMetrics at CRAN
Permanent link
Title: Data-Limited Methods Toolkit
Description: Development, simulation testing, and implementation of management
procedures for data-limited fisheries
(see Carruthers et al (2014) <doi:10.1016/j.fishres.2013.12.014>).
Author: Tom Carruthers [aut, cre],
Adrian Hordyk [aut],
M. Bryan [ctb],
HF. Geremont [ctb],
C. Grandin [ctb],
W. Harford [ctb],
Q. Huynh [ctb],
C. Walters [ctb]
Maintainer: Tom Carruthers <t.carruthers@fisheries.ubc.ca>
Diff between DLMtool versions 5.2.1 dated 2018-07-13 and 5.2.2 dated 2018-08-17
DESCRIPTION | 8 +-- MD5 | 51 ++++++++++----------- NEWS.md | 9 +++ R/Data_Functions.R | 14 ++++- R/DefineClasses.r | 59 ++++++++++-------------- R/MSE_Plotting_PMs.R | 11 ++-- R/MSE_functions.R | 1 R/Misc_Exported.R | 2 R/Misc_Internal.R | 4 - R/OM_init_doc.R | 2 R/PMobjects.R | 38 +++++++++++++--- R/runMSE.r | 76 +++++++++++++++++++------------- R/sysdata.rda |binary man/DCAC.Rd | 14 ++--- man/DDe.Rd | 2 man/EtargetLopt.Rd | 2 man/Fleet-class.Rd | 4 - man/ITM.Rd | 2 man/LBSPR.Rd | 2 man/Rcontrol.Rd | 2 man/XL2Data.Rd | 7 +- man/XL2OM.Rd | 2 man/calcMean.Rd | 2 man/calcProb.Rd | 4 - man/summary-Data.Rd | 7 ++ tests/manual/run-tests-code.R | 2 tests/manual/test-code/test-PMobjects.R |only 27 files changed, 196 insertions(+), 131 deletions(-)
Title: Supervised and Unsupervised Self-Organising Maps
Description: Functions to train self-organising maps (SOMs). Also interrogation of the maps and prediction using trained maps are supported. The name of the package refers to Teuvo Kohonen, the inventor of the SOM.
Author: Ron Wehrens and Johannes Kruisselbrink
Maintainer: Ron Wehrens <ron.wehrens@gmail.com>
Diff between kohonen versions 3.0.5 dated 2018-05-25 and 3.0.6 dated 2018-08-17
kohonen-3.0.5/kohonen/src/Makevars |only kohonen-3.0.5/kohonen/src/kohonen_init.c |only kohonen-3.0.6/kohonen/DESCRIPTION | 8 +++---- kohonen-3.0.6/kohonen/MD5 | 24 ++++++++++------------- kohonen-3.0.6/kohonen/NAMESPACE | 2 - kohonen-3.0.6/kohonen/NEWS | 9 ++++++-- kohonen-3.0.6/kohonen/R/RcppExports.R | 14 ++++++------- kohonen-3.0.6/kohonen/R/map.R | 20 +++++++++++-------- kohonen-3.0.6/kohonen/R/object.distances.R | 3 +- kohonen-3.0.6/kohonen/R/supersom.R | 16 ++++++++------- kohonen-3.0.6/kohonen/build/partial.rdb |binary kohonen-3.0.6/kohonen/demo/JSSdemo2.R | 4 +-- kohonen-3.0.6/kohonen/man/supersom.Rd | 4 +-- kohonen-3.0.6/kohonen/src/RcppExports.cpp | 30 ++++++++++++++++++++++------- 14 files changed, 80 insertions(+), 54 deletions(-)
Title: R Interface to a 'PostGIS' Database
Description: Provides an interface between R and 'PostGIS'-enabled
'PostgreSQL' databases to transparently transfer spatial
data. Both vector (points, lines, polygons) and raster data are
supported in read and write modes. Also provides convenience
functions to execute common procedures in 'PostgreSQL/PostGIS'.
Author: Mathieu Basille [aut],
David Bucklin [aut, cre]
Maintainer: David Bucklin <david.bucklin@gmail.com>
Diff between rpostgis versions 1.4.0 dated 2017-12-10 and 1.4.1 dated 2018-08-17
rpostgis-1.4.0/rpostgis/NEWS |only rpostgis-1.4.1/rpostgis/DESCRIPTION | 21 +++---- rpostgis-1.4.1/rpostgis/MD5 | 19 +++--- rpostgis-1.4.1/rpostgis/NEWS.md |only rpostgis-1.4.1/rpostgis/R/dbWriteDataFrame.R | 5 - rpostgis-1.4.1/rpostgis/R/pgInsert.R | 2 rpostgis-1.4.1/rpostgis/R/pgInsertize.R | 2 rpostgis-1.4.1/rpostgis/README.md | 71 ++++++++++++++----------- rpostgis-1.4.1/rpostgis/inst/CITATION | 15 ++--- rpostgis-1.4.1/rpostgis/man/figures |only rpostgis-1.4.1/rpostgis/man/pgInsert.Rd | 2 rpostgis-1.4.1/rpostgis/man/pgInsertizeGeom.Rd | 2 12 files changed, 73 insertions(+), 66 deletions(-)
Title: Gaussian Process Ranking of Multiple Time Series
Description: Implements a Gaussian process (GP)-based ranking method
which can be used to rank multiple time series according to their
temporal activity levels. An example is the case when expression
levels of all genes are measured over a time course and the main
concern is to identify the most active genes, i.e. genes which
show significant non-random variation in their expression levels.
This is achieved by computing Bayes factors for each time series
by comparing the marginal likelihoods under time-dependent and
time-independent GP models. Additional variance information from
pre-processing of the observations is incorporated into the GP
models, which makes the ranking more robust against model
overfitting. The package supports exporting the results to
'tigreBrowser' for visualisation, filtering or ranking.
Author: Hande Topa [aut, cre],
Antti Honkela [aut]
Maintainer: Hande Topa <hande.topa@helsinki.fi>
Diff between GPrank versions 0.1.3 dated 2018-06-18 and 0.1.4 dated 2018-08-17
GPrank-0.1.3/GPrank/inst/doc/vignette.R |only GPrank-0.1.3/GPrank/inst/doc/vignette.Rnw |only GPrank-0.1.3/GPrank/inst/doc/vignette.pdf |only GPrank-0.1.3/GPrank/vignettes/GPrank_refs.bib |only GPrank-0.1.3/GPrank/vignettes/figures |only GPrank-0.1.3/GPrank/vignettes/natbib.bst |only GPrank-0.1.3/GPrank/vignettes/natbib.sty |only GPrank-0.1.3/GPrank/vignettes/vignette.Rnw |only GPrank-0.1.4/GPrank/DESCRIPTION | 10 ++++++---- GPrank-0.1.4/GPrank/MD5 | 18 +++++++----------- GPrank-0.1.4/GPrank/build/vignette.rds |binary GPrank-0.1.4/GPrank/inst/doc/GPrank.R |only GPrank-0.1.4/GPrank/inst/doc/GPrank.Rmd |only GPrank-0.1.4/GPrank/inst/doc/GPrank.html |only GPrank-0.1.4/GPrank/vignettes/GPrank.Rmd |only GPrank-0.1.4/GPrank/vignettes/testdb.sqlite |only 16 files changed, 13 insertions(+), 15 deletions(-)
Title: Constructing Hierarchical Voronoi Tessellations and Overlay
Heatmap for Data Analysis
Description: Constructing hierarchical Voronoi tessellations for a given data set and overlay
heatmap for variables at various levels of the tessellations for in-depth data analysis. See <https://en.wikipedia.org/wiki/Voronoi_diagram> for more information. Credits to Mu Sigma for their continuous support throughout the development of the package.
Author: Meet Dave [aut, cre],
Zubin Dowlaty [aut],
Avinash Joshi [aut]
Maintainer: Meet Dave <meetdave06@gmail.com>
Diff between muHVT versions 0.2.0 dated 2018-07-09 and 0.2.1 dated 2018-08-17
DESCRIPTION | 20 ++++++++++---------- MD5 | 16 ++++++++-------- R/HVT.R | 1 - R/hvtHmap.R | 1 - R/predictHVT.R | 4 +--- inst/doc/muHVT.R | 4 ++-- inst/doc/muHVT.Rmd | 6 +++--- inst/doc/muHVT.html | 46 +++++++++++++++++++++++----------------------- vignettes/muHVT.Rmd | 6 +++--- 9 files changed, 50 insertions(+), 54 deletions(-)
Title: Interpretable Machine Learning
Description: Interpretability methods to analyze the behavior and predictions of
any machine learning model.
Implemented methods are:
Feature importance described by Fisher et al. (2018) <arXiv:1801.01489>,
partial dependence plots described by Friedman (2001) <http://www.jstor.org/stable/2699986>,
individual conditional expectation ('ice') plots described by Goldstein et al. (2013) <doi:10.1080/10618600.2014.907095>,
local models (variant of 'lime') described by Ribeiro et. al (2016) <arXiv:1602.04938>,
the Shapley Value described by Strumbelj et. al (2014) <doi:10.1007/s10115-013-0679-x>,
feature interactions described by Friedman et. al <doi:10.1214/07-AOAS148> and
tree surrogate models.
Author: Christoph Molnar [aut, cre]
Maintainer: Christoph Molnar <christoph.molnar@gmail.com>
Diff between iml versions 0.5.1 dated 2018-05-15 and 0.6.0 dated 2018-08-17
iml-0.5.1/iml/R/generate_marginals.R |only iml-0.6.0/iml/DESCRIPTION | 13 iml-0.6.0/iml/MD5 | 65 ++-- iml-0.6.0/iml/NAMESPACE | 3 iml-0.6.0/iml/NEWS.md | 16 + iml-0.6.0/iml/R/Data.R | 14 - iml-0.6.0/iml/R/FeatureImp.R | 107 +++++--- iml-0.6.0/iml/R/Interaction.R | 146 ++++++----- iml-0.6.0/iml/R/InterpretationMethod.R | 23 + iml-0.6.0/iml/R/LocalModel.R | 5 iml-0.6.0/iml/R/MarginalGenerator.R |only iml-0.6.0/iml/R/Partial.R | 60 ++-- iml-0.6.0/iml/R/Predictor.R | 25 + iml-0.6.0/iml/R/Shapley.R | 5 iml-0.6.0/iml/R/TreeSurrogate.R | 3 iml-0.6.0/iml/R/createPredictionFunction.R | 57 ++-- iml-0.6.0/iml/R/utils.R | 2 iml-0.6.0/iml/build/vignette.rds |binary iml-0.6.0/iml/inst/doc/intro.html | 64 ++-- iml-0.6.0/iml/inst/doc/parallel.R |only iml-0.6.0/iml/inst/doc/parallel.Rmd |only iml-0.6.0/iml/inst/doc/parallel.html |only iml-0.6.0/iml/man/FeatureImp.Rd | 17 - iml-0.6.0/iml/man/Interaction.Rd | 12 iml-0.6.0/iml/man/LocalModel.Rd | 5 iml-0.6.0/iml/man/Partial.Rd | 5 iml-0.6.0/iml/man/Predictor.Rd | 17 - iml-0.6.0/iml/man/Shapley.Rd | 5 iml-0.6.0/iml/man/TreeSurrogate.Rd | 3 iml-0.6.0/iml/tests/testthat/Rplots.pdf |binary iml-0.6.0/iml/tests/testthat/test-Data.R | 3 iml-0.6.0/iml/tests/testthat/test-FeatureImp.R | 17 - iml-0.6.0/iml/tests/testthat/test-Interaction.R | 52 --- iml-0.6.0/iml/tests/testthat/test-MarginalGenerator.R |only iml-0.6.0/iml/tests/testthat/test-Predictor.R | 4 iml-0.6.0/iml/tests/testthat/test-createPredictionFunction.R | 4 iml-0.6.0/iml/vignettes/parallel.Rmd |only 37 files changed, 416 insertions(+), 336 deletions(-)
Title: Calculate and Visualize the Herfindahl-Hirschman Index
Description: Based on the aggregated shares retained by individual firms or actors within a market or space, the Herfindahl-Hirschman Index (HHI) measures the level of concentration in a space. This package allows for intuitive and straightforward computation of HHI scores, requiring placement of objects of interest directly into the function. The package also includes a plot function for quick visual display of an HHI time series using any measure of time (year, quarter, month, etc.). For usage, please cite the Journal of Open Source Software paper associated with the package: Waggoner, Philip D. (2018) <doi:10.21105/joss.00828>.
Author: Philip D. Waggoner <pdwaggoner@wm.edu>
Maintainer: Philip D. Waggoner <pdwaggoner@wm.edu>
Diff between hhi versions 1.1.0 dated 2018-04-13 and 1.2.0 dated 2018-08-17
DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- NEWS | 24 ++++++++---------------- R/hhi.R | 11 +++++------ R/plot_hhi.R | 1 + README | 19 +++++++++---------- man/hhi.Rd | 2 ++ man/plot_hhi.Rd | 2 ++ 8 files changed, 40 insertions(+), 45 deletions(-)
Title: Fit, Simulate and Diagnose Exponential-Family Random Graph
Models to Egocentrically Sampled Network Data
Description: Utilities for managing egocentrically sampled network data and a wrapper around the 'ergm' package to facilitate ERGM inference and simulation from such data.
Author: Pavel N. Krivitsky [aut, cre] (<https://orcid.org/0000-0002-9101-3362>),
Steven M. Goodreau [ctb],
Martina Morris [ctb],
Kirk Li [ctb],
Emily N. Beylerian [ctb],
Michał Bojanowski [ctb]
Maintainer: Pavel N. Krivitsky <pavel@uow.edu.au>
Diff between ergm.ego versions 0.3.0 dated 2016-03-27 and 0.4.0 dated 2018-08-17
ergm.ego-0.3.0/ergm.ego/man/summary.statistics.egodata.Rd |only ergm.ego-0.4.0/ergm.ego/DESCRIPTION | 26 - ergm.ego-0.4.0/ergm.ego/LICENSE | 4 ergm.ego-0.4.0/ergm.ego/MD5 | 72 ++- ergm.ego-0.4.0/ergm.ego/NAMESPACE | 127 +++--- ergm.ego-0.4.0/ergm.ego/R/EgoStat.R | 274 ++++++++++++-- ergm.ego-0.4.0/ergm.ego/R/EgoStat.duration.R |only ergm.ego-0.4.0/ergm.ego/R/EgoStat.node.attr.R |only ergm.ego-0.4.0/ergm.ego/R/InitErgmTerm.R | 2 ergm.ego-0.4.0/ergm.ego/R/control.ergm.ego.R | 82 ++++ ergm.ego-0.4.0/ergm.ego/R/control.simulate.ergm.ego.R | 34 + ergm.ego-0.4.0/ergm.ego/R/degreedist.R | 225 +++++++---- ergm.ego-0.4.0/ergm.ego/R/egodata.R | 203 +++++++++- ergm.ego-0.4.0/ergm.ego/R/ergm.ego.R | 136 +++++- ergm.ego-0.4.0/ergm.ego/R/gof.ergm.ego.R | 51 ++ ergm.ego-0.4.0/ergm.ego/R/reweight.egodata.R |only ergm.ego-0.4.0/ergm.ego/R/simulate.ergm.ego.R | 81 +++- ergm.ego-0.4.0/ergm.ego/R/summary.ergm.ego.R | 13 ergm.ego-0.4.0/ergm.ego/R/summary.statistics.egodata.R | 63 +++ ergm.ego-0.4.0/ergm.ego/R/zzz.R | 8 ergm.ego-0.4.0/ergm.ego/README.md |only ergm.ego-0.4.0/ergm.ego/build/partial.rdb |binary ergm.ego-0.4.0/ergm.ego/inst |only ergm.ego-0.4.0/ergm.ego/man/as.egodata.network.Rd | 73 +-- ergm.ego-0.4.0/ergm.ego/man/as.network.egodata.Rd | 84 +--- ergm.ego-0.4.0/ergm.ego/man/control.ergm.ego.Rd | 190 ++++----- ergm.ego-0.4.0/ergm.ego/man/control.simulate.ergm.ego.Rd | 91 +--- ergm.ego-0.4.0/ergm.ego/man/degreedist.egodata.Rd | 80 ++-- ergm.ego-0.4.0/ergm.ego/man/egodata.Rd | 193 ++++----- ergm.ego-0.4.0/ergm.ego/man/ergm.ego-terms.Rd | 94 +--- ergm.ego-0.4.0/ergm.ego/man/ergm.ego.Rd | 157 +++----- ergm.ego-0.4.0/ergm.ego/man/gof.ergm.ego.Rd | 78 +-- ergm.ego-0.4.0/ergm.ego/man/mixingmatrix.egodata.Rd | 92 +--- ergm.ego-0.4.0/ergm.ego/man/node-attr-api.Rd |only ergm.ego-0.4.0/ergm.ego/man/simulate.ergm.ego.Rd | 121 ++---- ergm.ego-0.4.0/ergm.ego/man/subset.egodata.Rd | 83 +--- ergm.ego-0.4.0/ergm.ego/man/summary_formula.egodata.Rd |only ergm.ego-0.4.0/ergm.ego/tests/EgoStat.tests.R | 66 +-- ergm.ego-0.4.0/ergm.ego/tests/boot_jack.R |only ergm.ego-0.4.0/ergm.ego/tests/table_ppop.R |only ergm.ego-0.4.0/ergm.ego/tests/testthat |only ergm.ego-0.4.0/ergm.ego/tests/testthat.R |only 42 files changed, 1755 insertions(+), 1048 deletions(-)
Title: Robust Covariance Matrix Estimators
Description: Model-robust standard error estimators for cross-sectional, time series, clustered, panel, and longitudinal data.
Author: Achim Zeileis [aut, cre] (<https://orcid.org/0000-0003-0918-3766>),
Thomas Lumley [aut],
Susanne Berger [ctb],
Nathaniel Graham [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between sandwich versions 2.4-0 dated 2017-07-26 and 2.5-0 dated 2018-08-17
DESCRIPTION | 18 MD5 | 91 - NAMESPACE | 189 +- NEWS | 56 R/auxiliary.R | 12 R/bread.R | 10 R/vcovBS.R | 154 + R/vcovBS.lm.R |only R/vcovCL.R | 342 ++- R/vcovHAC.R | 4 R/vcovHC.R | 11 R/vcovPC.R | 28 R/vcovPL.R | 27 build/partial.rdb |binary build/vignette.rds |binary data/InstInnovation.rda |binary data/Investment.rda |binary data/PetersenCL.rda |binary data/PublicSchools.rda |binary inst/CITATION | 74 inst/doc/sandwich-CL.R | 63 inst/doc/sandwich-CL.Rnw | 3021 ++++++++++++++++++----------------- inst/doc/sandwich-CL.pdf |binary inst/doc/sandwich-OOP.Rnw | 2 inst/doc/sandwich-OOP.pdf |binary inst/doc/sandwich.pdf |binary inst/doc/sim-CL.R | 6 inst/doc/sim-CL.rda |binary man/InstInnovation.Rd | 53 man/meat.Rd | 6 man/vcovBS.Rd | 279 ++- man/vcovCL.Rd | 443 ++--- man/vcovHAC.Rd | 5 man/vcovHC.Rd | 7 man/vcovOPG.Rd | 9 man/vcovPC.Rd | 68 man/vcovPL.Rd | 80 tests/Examples/sandwich-Ex.Rout.save | 140 + tests/vcovCL.R |only tests/vcovCL.Rout.save |only tests/vcovPC.R |only tests/vcovPC.Rout.save |only tests/vcovPL.R |only tests/vcovPL.Rout.save |only vignettes/hac.bib | 276 ++- vignettes/sandwich-CL.Rnw | 3021 ++++++++++++++++++----------------- vignettes/sandwich-CL.Rout.save | 112 - vignettes/sandwich-OOP.Rnw | 2 vignettes/sim-CL.R | 6 vignettes/sim-CL.rda |binary 50 files changed, 4869 insertions(+), 3746 deletions(-)
Title: Query 'HaploReg', 'RegulomeDB', 'LDlink'
Description: A set of utilities for querying
'HaploReg' <http://archive.broadinstitute.org/mammals/haploreg/haploreg.php>,
'RegulomeDB' <http://www.regulomedb.org>, and LDlink <https://analysistools.nci.nih.gov/LDlink>
web-based tools. The package connects to
'HaploReg', 'RegulomeDB' and 'LDlink', searches and downloads results, without
opening web pages, directly from R environment.
Results are stored in a data frame that can be directly used in various
kinds of downstream analyses.
Author: Ilya Y. Zhbannikov [aut, cre],
Konstantin G. Arbeev [aut],
Anatoliy I. Yashin [aut]
Maintainer: Ilya Y. Zhbannikov <ilya.zhbannikov@duke.edu>
Diff between haploR versions 2.0.5 dated 2018-07-17 and 2.0.6 dated 2018-08-17
DESCRIPTION | 12 +-- MD5 | 15 ++-- build/vignette.rds |binary inst/NEWS | 4 - inst/doc/haplor-vignette.R | 14 ++-- inst/doc/haplor-vignette.Rmd | 14 ++-- inst/doc/haplor-vignette.html | 146 +++++++++++++++++++++--------------------- vignettes/haplor-vignette.Rmd | 14 ++-- vignettes/references.bib |only 9 files changed, 111 insertions(+), 108 deletions(-)
Title: Graphical User Interface for Data Science in R
Description: The R Analytic Tool To Learn Easily (Rattle) provides a
collection of utilities functions for the data scientist. A
Gnome (RGtk2) based graphical interface is included with
the aim to provide a simple and intuitive introduction to R
for data science, allowing a user to quickly load data from a CSV file
(or via ODBC), transform and explore the data,
build and evaluate models, and export models as PMML (predictive
modelling markup language) or as scores. A key aspect of the GUI
is that all R commands are logged and commented through the log tab.
This can be saved as a standalone R script file and as
an aid for the user to
learn R or to copy-and-paste directly into R itself.
Author: Graham Williams [aut, cph, cre],
Mark Vere Culp [cph],
Ed Cox [ctb],
Anthony Nolan [ctb],
Denis White [cph],
Daniele Medri [ctb],
Akbar Waljee [ctb] (OOB AUC for Random Forest),
Brian Ripley [cph] (print.summary.nnet),
Jose Magana [ctb] (ggpairs plots),
Surendra Tipparaju [ctb] (initial RevoScaleR/XDF),
Durga Prasad Chappidi [ctb] (initial RevoScaleR/XDF),
Dinesh Manyam Venkata [ctb] (initial RevoScaleR/XDF),
Mrinal Chakraborty [ctb] (initial RevoScaleR/XDF),
Fang Zhou [ctb] (initial xgboost),
Cameron Chisholm [ctb] (risk plot on risk chart)
Maintainer: Graham Williams <Graham.Williams@togaware.com>
Diff between rattle versions 5.1.0 dated 2017-09-05 and 5.2.0 dated 2018-08-17
rattle-5.1.0/rattle/README |only rattle-5.1.0/rattle/inst/etc/ConnectRlogo.png |only rattle-5.2.0/rattle/DESCRIPTION | 50 ++- rattle-5.2.0/rattle/MD5 | 188 +++++++-------- rattle-5.2.0/rattle/NAMESPACE | 2 rattle-5.2.0/rattle/R/acquireAuditData.R | 2 rattle-5.2.0/rattle/R/ada.R | 6 rattle-5.2.0/rattle/R/ada_gui.R | 2 rattle-5.2.0/rattle/R/asRules.rpart.R | 2 rattle-5.2.0/rattle/R/associate.R | 20 - rattle-5.2.0/rattle/R/biclust.R | 8 rattle-5.2.0/rattle/R/binning.R | 2 rattle-5.2.0/rattle/R/clara.R | 2 rattle-5.2.0/rattle/R/cluster.R | 2 rattle-5.2.0/rattle/R/ctree.R | 10 rattle-5.2.0/rattle/R/data.R | 93 ++++--- rattle-5.2.0/rattle/R/evaluate.R | 90 +++---- rattle-5.2.0/rattle/R/ewkm.R | 8 rattle-5.2.0/rattle/R/execute.R | 2 rattle-5.2.0/rattle/R/executeLogTab.R | 2 rattle-5.2.0/rattle/R/executeModelGlm.R | 2 rattle-5.2.0/rattle/R/executeModelRF.R | 18 - rattle-5.2.0/rattle/R/executeModelRxDTree.R | 4 rattle-5.2.0/rattle/R/explore.R | 72 ++--- rattle-5.2.0/rattle/R/export.R | 2 rattle-5.2.0/rattle/R/fancyRpartPlot.R | 18 + rattle-5.2.0/rattle/R/ggVarImp.R | 4 rattle-5.2.0/rattle/R/hclust.R | 18 - rattle-5.2.0/rattle/R/help.R | 58 +++- rattle-5.2.0/rattle/R/kmeans.R | 22 - rattle-5.2.0/rattle/R/log.R | 29 +- rattle-5.2.0/rattle/R/model.R | 10 rattle-5.2.0/rattle/R/nnet.R | 20 - rattle-5.2.0/rattle/R/normVarNames.R | 11 rattle-5.2.0/rattle/R/projects.R | 22 - rattle-5.2.0/rattle/R/psfchart.R | 2 rattle-5.2.0/rattle/R/random_forest.R | 6 rattle-5.2.0/rattle/R/rattle.R | 114 ++++----- rattle-5.2.0/rattle/R/rattleInfo.R | 6 rattle-5.2.0/rattle/R/report.R | 6 rattle-5.2.0/rattle/R/riskchart.R | 119 ++++++++- rattle-5.2.0/rattle/R/rpart.R | 8 rattle-5.2.0/rattle/R/rxkmeans.R | 22 - rattle-5.2.0/rattle/R/survival.R | 6 rattle-5.2.0/rattle/R/test.R | 2 rattle-5.2.0/rattle/R/textminer.R | 16 - rattle-5.2.0/rattle/R/textview.R | 2 rattle-5.2.0/rattle/R/transform.R | 2 rattle-5.2.0/rattle/R/xgb.R | 19 + rattle-5.2.0/rattle/R/xgboostFormula.R | 3 rattle-5.2.0/rattle/R/zzz.R | 14 - rattle-5.2.0/rattle/build/vignette.rds |binary rattle-5.2.0/rattle/data |only rattle-5.2.0/rattle/inst/NEWS | 44 +++ rattle-5.2.0/rattle/inst/arff |only rattle-5.2.0/rattle/inst/doc/rattle.R | 4 rattle-5.2.0/rattle/inst/doc/rattle.Rnw | 58 ++-- rattle-5.2.0/rattle/inst/doc/rattle.pdf |binary rattle-5.2.0/rattle/inst/etc/rattle.ui | 81 ++++-- rattle-5.2.0/rattle/inst/etc/rattle_macosx.ui | 4 rattle-5.2.0/rattle/man/acquireAuditData.Rd | 2 rattle-5.2.0/rattle/man/asRules.Rd | 2 rattle-5.2.0/rattle/man/asRules.rpart.Rd | 2 rattle-5.2.0/rattle/man/binning.Rd | 2 rattle-5.2.0/rattle/man/calcInitialDigitDistr.Rd | 2 rattle-5.2.0/rattle/man/calculateAUC.Rd | 2 rattle-5.2.0/rattle/man/centers.hclust.Rd | 2 rattle-5.2.0/rattle/man/comcat.Rd | 2 rattle-5.2.0/rattle/man/drawTreeNodes.Rd | 2 rattle-5.2.0/rattle/man/drawTreesAda.Rd | 2 rattle-5.2.0/rattle/man/errorMatrix.Rd | 2 rattle-5.2.0/rattle/man/evaluateRisk.Rd | 2 rattle-5.2.0/rattle/man/fancyRpartPlot.Rd | 19 - rattle-5.2.0/rattle/man/genPlotTitleCmd.Rd | 2 rattle-5.2.0/rattle/man/ggVarImp.Rd | 2 rattle-5.2.0/rattle/man/grouper.Rd | 2 rattle-5.2.0/rattle/man/internal.Rd | 4 rattle-5.2.0/rattle/man/listAdaVarsUsed.Rd | 2 rattle-5.2.0/rattle/man/listTreesAda.Rd | 2 rattle-5.2.0/rattle/man/plotOptimalLine.Rd | 2 rattle-5.2.0/rattle/man/plotRisk.Rd | 2 rattle-5.2.0/rattle/man/printRandomForests.Rd | 2 rattle-5.2.0/rattle/man/randomForest2Rules.Rd | 2 rattle-5.2.0/rattle/man/rattle.Rd | 2 rattle-5.2.0/rattle/man/rattle.print.summary.multinom.Rd | 2 rattle-5.2.0/rattle/man/rattleInfo.Rd | 2 rattle-5.2.0/rattle/man/riskchart.Rd | 2 rattle-5.2.0/rattle/man/savePlotToFile.Rd | 2 rattle-5.2.0/rattle/man/setupDataset.Rd | 2 rattle-5.2.0/rattle/man/treeset.randomForest.Rd | 2 rattle-5.2.0/rattle/man/weather.Rd | 12 rattle-5.2.0/rattle/man/weatherAUS.Rd |only rattle-5.2.0/rattle/man/whichNumerics.Rd | 2 rattle-5.2.0/rattle/man/wine.Rd |only rattle-5.2.0/rattle/vignettes/rattle.Rnw | 58 ++-- 95 files changed, 875 insertions(+), 615 deletions(-)
Title: Text Mining of PubMed Abstracts
Description: Text mining of PubMed Abstracts (text and XML) from <http://www.ncbi.nlm.nih.gov/pubmed>.
Author: Jyoti Rani, S.Ramachandran, Ab Rauf Shah
Maintainer: S. Ramachandran <ramuigib@gmail.com>
Diff between pubmed.mineR versions 1.0.12 dated 2018-04-12 and 1.0.13 dated 2018-08-17
DESCRIPTION | 11 ++++++----- MD5 | 14 ++++++++++---- NAMESPACE | 3 +++ R/Give_Sentences.R | 2 +- R/co_occurrence_fn.R |only R/readabsnew.R |only R/space_quasher.R |only data/common_words_new.rda |binary man/co_occurrence_fn.Rd |only man/readabsnew.Rd |only man/space_quasher.Rd |only 11 files changed, 20 insertions(+), 10 deletions(-)
Title: Optimized Regression Discontinuity Designs
Description: Optimized inference in regression discontinuity designs, as proposed by Imbens and Wager (2017) <arXiv:1705.01677>.
Author: Guido Imbens [aut],
Stefan Wager [aut, cre]
Maintainer: Stefan Wager <swager@stanford.edu>
Diff between optrdd versions 1.0.1 dated 2018-05-31 and 1.0.2 dated 2018-08-17
DESCRIPTION | 8 +-- MD5 | 8 +-- R/optrdd.R | 92 +++++++++++++++++++++++++++++++---------- man/optrdd.Rd | 6 +- tests/testthat/test_for_cran.R | 14 +++--- 5 files changed, 90 insertions(+), 38 deletions(-)
Title: Global Surface Summary of the Day (GSOD) Weather Data from R
Description: Provides automated downloading, parsing, cleaning, unit conversion
and formatting of Global Surface Summary of the Day (GSOD) weather data from
the from the USA National Centers for Environmental Information (NCEI) for
use in R. Units are converted from from United States Customary System
(USCS) units to International System of Units (SI). Stations may be
individually checked for number of missing days defined by the user, where
stations with too many missing observations are omitted. Only stations with
valid reported latitude and longitude values are permitted in the final
data. Additional useful elements, saturation vapour pressure (es), actual
vapour pressure (ea) and relative humidity are calculated from the original
data and included in the final data set. The resulting data include station
identification information, state, country, latitude, longitude, elevation,
weather observations and associated flags. Data may be automatically saved
to disk. File output may be returned as a comma-separated values (CSV) or
GeoPackage (GPKG) file. Additional data are included with this R package: a
list of elevation values for stations between -60 and 60 degrees latitude
derived from the Shuttle Radar Topography Measuring Mission (SRTM). For
information on the GSOD data from NCEI, please see the GSOD readme.txt file
available from, <http://www1.ncdc.noaa.gov/pub/data/gsod/readme.txt>.
Author: Adam Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>),
Tomislav Hengl [aut] (<https://orcid.org/0000-0002-9921-5129>),
Andrew Nelson [aut] (<https://orcid.org/0000-0002-7249-3778>),
Hugh Parsonage [cph, ctb] (<https://orcid.org/0000-0003-4055-0835>),
Bob Rudis [cph, ctb] (<https://orcid.org/0000-0001-5670-2640>),
Gwenael Giboire [ctb] (Several bug reports in early versions and
testing feedback),
Łukasz Pawlik [ctb] (Reported bug in windspeed conversion calculation),
Ross Darnell [ctb] (Reported bug in Windows OS versions causing GSOD
data untarring to fail)
Maintainer: Adam Sparks <adamhsparks@gmail.com>
Diff between GSODR versions 1.2.1 dated 2018-06-16 and 1.2.2 dated 2018-08-17
GSODR-1.2.1/GSODR/inst/doc/Specified_stations_for_a_range_of_years.R |only GSODR-1.2.1/GSODR/inst/doc/Specified_stations_for_a_range_of_years.Rmd |only GSODR-1.2.1/GSODR/inst/doc/Specified_stations_for_a_range_of_years.html |only GSODR-1.2.1/GSODR/inst/extdata/stations.rda |only GSODR-1.2.1/GSODR/man/figures/GSODR-hex.png |only GSODR-1.2.1/GSODR/vignettes/Loop-Figure-1.png |only GSODR-1.2.1/GSODR/vignettes/Loop-Figure-2.png |only GSODR-1.2.1/GSODR/vignettes/Specified_stations_for_a_range_of_years.Rmd |only GSODR-1.2.2/GSODR/DESCRIPTION | 10 GSODR-1.2.2/GSODR/MD5 | 33 GSODR-1.2.2/GSODR/NEWS.md | 385 +++++----- GSODR-1.2.2/GSODR/R/internal_functions.R | 2 GSODR-1.2.2/GSODR/README.md | 285 ++----- GSODR-1.2.2/GSODR/build/vignette.rds |binary GSODR-1.2.2/GSODR/inst/doc/GSODR.html | 50 - GSODR-1.2.2/GSODR/inst/doc/use_case_1.R |only GSODR-1.2.2/GSODR/inst/doc/use_case_1.Rmd |only GSODR-1.2.2/GSODR/inst/doc/use_case_1.html |only GSODR-1.2.2/GSODR/inst/extdata/country_list.rda |binary GSODR-1.2.2/GSODR/inst/extdata/isd_history.rda |binary GSODR-1.2.2/GSODR/inst/vector/GSODR-hex.svg | 335 ++++---- GSODR-1.2.2/GSODR/man/figures/Use_Case_1_Figure_1.png |only GSODR-1.2.2/GSODR/man/figures/Use_Case_1_Figure_2.png |only GSODR-1.2.2/GSODR/man/figures/logo.png |only GSODR-1.2.2/GSODR/vignettes/use_case_1.Rmd |only 25 files changed, 520 insertions(+), 580 deletions(-)
Title: Daily Based Morgan-Morgan-Finney (DMMF) Soil Erosion Model
Description: Implements the daily based Morgan-Morgan-Finney (DMMF) soil erosion model (Choi et al., 2017 <doi:10.3390/w9040278>) for estimating surface runoff and sediment budgets from a field or a catchment on a daily basis.
Author: Kwanghun Choi [aut, cre],
Sebastian Arnhold [dtc, ctb],
Bjoern Reineking [ths, ctb]
Maintainer: Kwanghun Choi <kwanghun.choi@yahoo.com>
Diff between DMMF versions 0.4.0.1 dated 2018-01-10 and 0.5.0.2 dated 2018-08-17
DESCRIPTION | 12 +++-- MD5 | 27 ++++++------ NAMESPACE | 2 NEWS.md | 9 ++++ R/Function_DMMF.r | 2 R/Function_DMMFc.r |only R/Function_MapChecker.r | 2 R/Function_SinkFill.r | 2 data/Potato.Concave.rda |binary data/Potato.Convex.rda |binary inst/THANKS.md | 2 man/DMMFc.Rd |only src/1_5_MMFcAlg_d.f95 |only src/2_1_SinkFillAlg.f95 | 106 ++++++++++++++++-------------------------------- src/DMMF.h | 3 + src/R_init_DMMF.c | 3 - 16 files changed, 78 insertions(+), 92 deletions(-)
Title: Biodiversity Assessment Tools
Description: Includes algorithms to assess alpha and beta
diversity in all their dimensions (taxon, phylogenetic and functional
diversity), whether communities are completely sampled or not. It allows
performing a number of analyses based on either species identities or
phylogenetic/functional trees depicting species relationships.
Author: Pedro Cardoso, Francois Rigal, Jose Carlos Carvalho
Maintainer: Pedro Cardoso <pedro.cardoso@helsinki.fi>
Diff between BAT versions 1.5.6 dated 2017-06-27 and 1.6.0 dated 2018-08-17
DESCRIPTION | 14 MD5 | 66 NAMESPACE | 73 R/BAT.R | 4008 ++++++++++++++++++++++++----------------------- man/accuracy.Rd | 86 - man/alpha.Rd | 98 - man/alpha.accum.Rd | 230 +- man/alpha.estimate.Rd | 154 - man/arrabida.Rd | 30 man/beta.Rd | 117 - man/beta.accum.Rd | 120 - man/beta.multi.Rd | 120 - man/beta.volumes.Rd |only man/contribution.Rd | 77 man/dispersion.Rd | 90 - man/functree.Rd | 32 man/gdm.Rd | 96 - man/geres.Rd | 30 man/guadiana.Rd | 30 man/iaor.Rd | 70 man/optim.alpha.Rd | 92 - man/optim.alpha.stats.Rd | 80 man/optim.beta.Rd | 112 - man/optim.beta.stats.Rd | 87 - man/optim.spatial.Rd | 60 man/originality.Rd |only man/phylotree.Rd | 30 man/sar.Rd | 90 - man/sim.plot.Rd | 54 man/sim.sad.Rd | 70 man/sim.sample.Rd | 66 man/sim.spatial.Rd | 90 - man/sim.tree.Rd | 60 man/slope.Rd | 66 man/uniqueness.Rd | 74 35 files changed, 3357 insertions(+), 3215 deletions(-)
Title: Time Resolved Simulations of Antibody Repertoires
Description: Simulation methods for the evolution of antibody repertoires. The heavy and light chain variable region of both human and C57BL/6 mice can be simulated in a time-dependent fashion. Both single lineages using one set of V-, D-, and J-genes or full repertoires can be simulated. The algorithm begins with an initial V-D-J recombination event, starting the first phylogenetic tree. Upon completion, the main loop of the algorithm begins, with each iteration representing one simulated time step. Various mutation events are possible at each time step, contributing to a diverse final repertoire.
Author: Alexander Yermanos
Maintainer: Alexander Yermanos <ayermano@ethz.ch>
Diff between AbSim versions 0.2.4 dated 2017-10-27 and 0.2.6 dated 2018-08-17
DESCRIPTION | 8 +++--- MD5 | 6 ++-- R/internal.R | 7 +++-- inst/doc/vignette.html | 59 ++++++++++++++++++++++++------------------------- 4 files changed, 41 insertions(+), 39 deletions(-)
Title: Utilities for Handling Strings and Text
Description: Utilities for handling character vectors
that store human-readable text (either plain or with
markup, such as HTML or LaTeX). The package provides,
in particular, functions that help with the
preparation of plain-text reports (e.g. for expanding
and aligning strings that form the lines of such
reports); the package also provides generic functions for
transforming R objects to HTML and to plain text.
Author: Enrico Schumann [aut, cre] (<https://orcid.org/0000-0001-7601-6576>)
Maintainer: Enrico Schumann <es@enricoschumann.net>
Diff between textutils versions 0.1-6 dated 2016-12-16 and 0.1-9 dated 2018-08-17
textutils-0.1-6/textutils/ChangeLog |only textutils-0.1-9/textutils/DESCRIPTION | 16 textutils-0.1-9/textutils/MD5 | 56 textutils-0.1-9/textutils/NAMESPACE | 45 textutils-0.1-9/textutils/NEWS | 72 textutils-0.1-9/textutils/R/functions.R | 4866 +++++++------- textutils-0.1-9/textutils/README.md | 68 textutils-0.1-9/textutils/build/partial.rdb |binary textutils-0.1-9/textutils/build/vignette.rds |binary textutils-0.1-9/textutils/inst/doc/btable.R | 54 textutils-0.1-9/textutils/inst/doc/btable.Rnw | 146 textutils-0.1-9/textutils/inst/doc/btable.pdf |binary textutils-0.1-9/textutils/inst/unitTests/runTests.R | 44 textutils-0.1-9/textutils/inst/unitTests/test_results.txt | 49 textutils-0.1-9/textutils/inst/unitTests/ut_text.R | 86 textutils-0.1-9/textutils/man/HTMLdecode.Rd | 72 textutils-0.1-9/textutils/man/TeXencode.Rd |only textutils-0.1-9/textutils/man/TeXunits.Rd | 112 textutils-0.1-9/textutils/man/btable.Rd | 108 textutils-0.1-9/textutils/man/fill_in.Rd |only textutils-0.1-9/textutils/man/latexrule.Rd | 86 textutils-0.1-9/textutils/man/rmrp.Rd | 72 textutils-0.1-9/textutils/man/spaces.Rd | 70 textutils-0.1-9/textutils/man/strexp.Rd | 88 textutils-0.1-9/textutils/man/textutils-package.Rd | 48 textutils-0.1-9/textutils/man/title_case.Rd |only textutils-0.1-9/textutils/man/toHTML.Rd | 125 textutils-0.1-9/textutils/man/toText.Rd | 112 textutils-0.1-9/textutils/man/trim.Rd | 74 textutils-0.1-9/textutils/man/valign.Rd | 94 textutils-0.1-9/textutils/vignettes/btable.Rnw | 146 31 files changed, 3452 insertions(+), 3257 deletions(-)
Title: Rendering Parameterized SQL and Translation to Dialects
Description: A rendering tool for parameterized SQL that also translates into
different SQL dialects. These dialects include 'Microsoft Sql Server', 'Oracle',
'PostgreSql', 'Amazon RedShift', 'Apache Impala', 'IBM Netezza', 'Google BigQuery', and 'Microsoft PDW'.
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between SqlRender versions 1.5.0 dated 2018-05-28 and 1.5.2 dated 2018-08-17
DESCRIPTION | 10 ++-- MD5 | 24 +++++------ NEWS | 12 +++++ build/vignette.rds |binary inst/csv/replacementPatterns.csv | 16 +++++++ inst/doc/UsingSqlRender.R | 10 ++++ inst/doc/UsingSqlRender.Rmd | 13 +++++- inst/doc/UsingSqlRender.pdf |binary inst/java/SqlRender.jar |binary man/loadRenderTranslateSql.Rd | 4 - man/renderSqlFile.Rd | 3 - tests/testthat/test-translateSql.R | 80 +++++++++++++++++++++++++++++++++++++ vignettes/UsingSqlRender.Rmd | 13 +++++- 13 files changed, 162 insertions(+), 23 deletions(-)
Title: Seamless Integration Between R and 'Julia'
Description: Provides an R interface to 'Julia',
which is a high-level, high-performance dynamic programming language
for numerical computing, see <https://julialang.org/> for more information.
It provides a high-level interface as well as a low-level interface.
Using the high level interface, you could call any 'Julia' function just like
any R function with automatic type conversion. Using the low level interface,
you could deal with C-level SEXP directly while enjoying the convenience of
using a high-level programming language like 'Julia'.
Author: Changcheng Li [aut, cre],
Randy Lai [ctb],
Dmitri Grominski [ctb],
Nagi Teramo [ctb]
Maintainer: Changcheng Li <cxl508@psu.edu>
Diff between JuliaCall versions 0.15.0 dated 2018-08-01 and 0.16.0 dated 2018-08-17
JuliaCall-0.15.0/JuliaCall/man/julia_check.Rd |only JuliaCall-0.15.0/JuliaCall/vignettes/JuliaCall_in_RMarkdown_files/figure-markdown_github/unnamed-chunk-3-J1.png |only JuliaCall-0.15.0/JuliaCall/vignettes/JuliaCall_in_RMarkdown_files/figure-markdown_github/unnamed-chunk-4-J1.png |only JuliaCall-0.16.0/JuliaCall/DESCRIPTION | 8 JuliaCall-0.16.0/JuliaCall/MD5 | 54 JuliaCall-0.16.0/JuliaCall/NAMESPACE | 1 JuliaCall-0.16.0/JuliaCall/NEWS.md | 22 JuliaCall-0.16.0/JuliaCall/R/JuliaObject.R | 14 JuliaCall-0.16.0/JuliaCall/R/aaa.R | 14 JuliaCall-0.16.0/JuliaCall/R/console.R | 2 JuliaCall-0.16.0/JuliaCall/R/dispatch.R | 14 JuliaCall-0.16.0/JuliaCall/R/interface.R | 11 JuliaCall-0.16.0/JuliaCall/R/zzz.R | 24 JuliaCall-0.16.0/JuliaCall/README.md | 74 JuliaCall-0.16.0/JuliaCall/inst/doc/JuliaCall_in_Jupyter_R_Notebook.html | 1382 ------ JuliaCall-0.16.0/JuliaCall/inst/doc/Julia_in_RMarkdown.html | 66 JuliaCall-0.16.0/JuliaCall/inst/julia/JuliaObject.jl | 27 JuliaCall-0.16.0/JuliaCall/inst/julia/dispatch.jl | 26 JuliaCall-0.16.0/JuliaCall/inst/julia/display/IRjulia.jl | 2 JuliaCall-0.16.0/JuliaCall/inst/julia/display/RmdJulia.jl | 2 JuliaCall-0.16.0/JuliaCall/inst/julia/display/basic.jl | 14 JuliaCall-0.16.0/JuliaCall/inst/julia/incomplete_console.jl | 2 JuliaCall-0.16.0/JuliaCall/inst/julia/install_dependency.jl | 12 JuliaCall-0.16.0/JuliaCall/inst/julia/interface1.jl | 2 JuliaCall-0.16.0/JuliaCall/inst/julia/setup.jl | 87 JuliaCall-0.16.0/JuliaCall/man/julia_setup.Rd | 7 JuliaCall-0.16.0/JuliaCall/tests/testthat/simplesource.jl |only JuliaCall-0.16.0/JuliaCall/tests/testthat/test_julia_source.R |only JuliaCall-0.16.0/JuliaCall/vignettes/JuliaCall_in_Jupyter_R_Notebook1.md | 1985 ---------- JuliaCall-0.16.0/JuliaCall/vignettes/JuliaCall_in_RMarkdown.md | 53 JuliaCall-0.16.0/JuliaCall/vignettes/JuliaCall_in_RMarkdown_files/figure-markdown_github/unnamed-chunk-2-J1.png |only 31 files changed, 557 insertions(+), 3348 deletions(-)
Title: Fluid Data Transformations
Description: Supplies higher-order fluid data transform operators that include pivot and anti-pivot as special cases.
The methodology is describe in 'Zumel', 2018, "Fluid data reshaping with 'cdata'", <http://winvector.github.io/FluidData/FluidDataReshapingWithCdata.html> , doi:10.5281/zenodo.1173299 .
Based on the 'DBI' database interface.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between cdata versions 0.7.3 dated 2018-07-20 and 0.7.4 dated 2018-08-17
cdata-0.7.3/cdata/inst/doc/FrameTools.R |only cdata-0.7.3/cdata/inst/doc/FrameTools.Rmd |only cdata-0.7.3/cdata/inst/doc/FrameTools.html |only cdata-0.7.3/cdata/vignettes/FrameTools.Rmd |only cdata-0.7.4/cdata/DESCRIPTION | 16 +++---- cdata-0.7.4/cdata/MD5 | 37 +++++++---------- cdata-0.7.4/cdata/NAMESPACE | 8 +++ cdata-0.7.4/cdata/NEWS.md | 5 ++ cdata-0.7.4/cdata/R/LocalOps.R | 52 ++++++++++++++++++++---- cdata-0.7.4/cdata/R/RowsColumns.R | 14 ++++++ cdata-0.7.4/cdata/R/relops.R |only cdata-0.7.4/cdata/README.md | 2 cdata-0.7.4/cdata/build/vignette.rds |binary cdata-0.7.4/cdata/inst/doc/cdata.html | 6 +- cdata-0.7.4/cdata/man/blocks_to_rowrecs.Rd | 54 ++++++++++++++++++++++++- cdata-0.7.4/cdata/man/blocks_to_rowrecs_q.Rd | 8 +-- cdata-0.7.4/cdata/man/build_pivot_control.Rd | 52 ++++++++++++++++++++++-- cdata-0.7.4/cdata/man/build_pivot_control_q.Rd | 5 +- cdata-0.7.4/cdata/man/reexports.Rd | 12 ----- cdata-0.7.4/cdata/man/rowrecs_to_blocks.Rd | 53 +++++++++++++++++++++++- cdata-0.7.4/cdata/man/rowrecs_to_blocks_q.Rd | 3 - cdata-0.7.4/cdata/man/unpivot_to_blocks.Rd | 47 +++++++++++++++++++++ 22 files changed, 305 insertions(+), 69 deletions(-)