Sun, 19 Aug 2018

Package RcmdrMisc updated to version 2.5-0 with previous version 1.0-10 dated 2018-04-02

Title: R Commander Miscellaneous Functions
Description: Various statistical, graphics, and data-management functions used by the Rcmdr package in the R Commander GUI for R.
Author: John Fox [aut, cre], Robert Muenchen [ctb], Dan Putler [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>

Diff between RcmdrMisc versions 1.0-10 dated 2018-04-02 and 2.5-0 dated 2018-08-19

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Package pinbasic updated to version 1.2.1 with previous version 1.2.0 dated 2017-12-20

Title: Fast and Stable Estimation of the Probability of Informed Trading (PIN)
Description: Utilities for fast and stable estimation of the probability of informed trading (PIN) in the model introduced by Easley et al. (2002) <DOI:10.1111/1540-6261.00493> are implemented. Since the basic model developed by Easley et al. (1996) <DOI:10.1111/j.1540-6261.1996.tb04074.x> is nested in the former due to equating the intensity of uninformed buys and sells, functions can also be applied to this simpler model structure, if needed. State-of-the-art factorization of the model likelihood function as well as most recent algorithms for generating initial values for optimization routines are implemented. In total, two likelihood factorizations and three methodologies for starting values are included. Furthermore, functions for simulating datasets of daily aggregated buys and sells, calculating confidence intervals for the probability of informed trading and posterior probabilities of trading days' conditions are available.
Author: Andreas Recktenwald [aut, cre]
Maintainer: Andreas Recktenwald <arecktenwald85@gmail.com>

Diff between pinbasic versions 1.2.0 dated 2017-12-20 and 1.2.1 dated 2018-08-19

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Package netjack updated to version 1.1.1 with previous version 1.1.0 dated 2018-08-19

Title: Tools for Working with Samples of Networks
Description: Tools for managing large sets of network data and performing whole network analysis. This package is focused on the network based statistic jackknife method, and implements a framework that can be extended to other network manipulations and analyses.
Author: Teague Henry
Maintainer: Teague Henry <trhenry@email.unc.edu>

Diff between netjack versions 1.1.0 dated 2018-08-19 and 1.1.1 dated 2018-08-19

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Package mudata2 updated to version 1.0.3 with previous version 1.0.2.1 dated 2018-08-19

Title: Interchange Tools for Multi-Parameter Spatiotemporal Data
Description: Formatting and structuring multi-parameter spatiotemporal data is often a time-consuming task. This package offers functions and data structures designed to easily organize and visualize these data for applications in geology, paleolimnology, dendrochronology, and paleoclimate. See Dunnington and Spooner (2018) <doi:10.1139/facets-2017-0026>.
Author: Dewey Dunnington [aut, cre]
Maintainer: ORPHANED

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Package cgraph updated to version 2.0.2 with previous version 2.0.1 dated 2018-08-13

Title: Computational Graphs
Description: Allows to create, evaluate, and differentiate computational graphs in R. A computational graph is a graph representation of a multivariate function decomposed by its (elementary) operations. Nodes in the graph represent arrays while edges represent dependencies among the arrays. An advantage of expressing a function as a computational graph is that this enables to differentiate the function by automatic differentiation. The 'cgraph' package supports various functions including basic arithmetic, trigonometry functions, and linear algebra functions. It differentiates computational graphs by reverse automatic differentiation. The flexible architecture of the package makes it applicable to solve a variety of problems including local sensitivity analysis, gradient-based optimization, and machine learning.
Author: Ron Triepels
Maintainer: Ron Triepels <dev@cgraph.org>

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Package censusapi updated to version 0.4.1 with previous version 0.3.0 dated 2018-05-02

Title: Retrieve Data from the Census APIs
Description: A wrapper for the U.S. Census Bureau APIs that returns data frames of Census data and metadata. Available datasets include the Decennial Census, American Community Survey, Small Area Health Insurance Estimates, Small Area Income and Poverty Estimates, and Population Estimates and Projections. See <https://www.census.gov/data/developers/data-sets.html> for more information.
Author: Hannah Recht [aut, cre]
Maintainer: Hannah Recht <hrecht2@gmail.com>

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Package effects updated to version 4.0-3 with previous version 4.0-2 dated 2018-06-19

Title: Effect Displays for Linear, Generalized Linear, and Other Models
Description: Graphical and tabular effect displays, e.g., of interactions, for various statistical models with linear predictors.
Author: John Fox [aut, cre], Sanford Weisberg [aut], Michael Friendly [aut], Jangman Hong [aut], Robert Andersen [ctb], David Firth [ctb], Steve Taylor [ctb], R Core Team [ctb]
Maintainer: John Fox <jfox@mcmaster.ca>

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Package bridgesampling updated to version 0.5-2 with previous version 0.4-0 dated 2017-12-19

Title: Bridge Sampling for Marginal Likelihoods and Bayes Factors
Description: Provides functions for estimating marginal likelihoods, Bayes factors, posterior model probabilities, and normalizing constants in general, via different versions of bridge sampling (Meng & Wong, 1996, <http://www3.stat.sinica.edu.tw/statistica/j6n4/j6n43/j6n43.htm>).
Author: Quentin F. Gronau [aut, cre] (<https://orcid.org/0000-0001-5510-6943>), Henrik Singmann [aut] (<https://orcid.org/0000-0002-4842-3657>), Jonathan J. Forster [ctb], Eric-Jan Wagenmakers [ths], The JASP Team [ctb], Jiqiang Guo [ctb], Jonah Gabry [ctb], Ben Goodrich [ctb], Kees Mulder [ctb]
Maintainer: Quentin F. Gronau <Quentin.F.Gronau@gmail.com>

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Package netjack updated to version 1.1.0 with previous version 1.0.0 dated 2018-07-01

Title: Tools for Working with Samples of Networks
Description: Tools for managing large sets of network data and performing whole network analysis. This package is focused on the network based statistic jackknife method, and implements a framework that can be extended to other network manipulations and analyses.
Author: Teague Henry
Maintainer: Teague Henry <trhenry@email.unc.edu>

Diff between netjack versions 1.0.0 dated 2018-07-01 and 1.1.0 dated 2018-08-19

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Package exifr updated to version 0.2.2 with previous version 0.2.1 dated 2017-10-14

Title: EXIF Image Data in R
Description: Reads EXIF data using ExifTool <http://www.sno.phy.queensu.ca/~phil/exiftool/> and returns results as a data frame. ExifTool is a platform-independent Perl library plus a command-line application for reading, writing and editing meta information in a wide variety of files. ExifTool supports many different metadata formats including EXIF, GPS, IPTC, XMP, JFIF, GeoTIFF, ICC Profile, Photoshop IRB, FlashPix, AFCP and ID3, as well as the maker notes of many digital cameras by Canon, Casio, FLIR, FujiFilm, GE, HP, JVC/Victor, Kodak, Leaf, Minolta/Konica-Minolta, Motorola, Nikon, Nintendo, Olympus/Epson, Panasonic/Leica, Pentax/Asahi, Phase One, Reconyx, Ricoh, Samsung, Sanyo, Sigma/Foveon and Sony.
Author: Dewey Dunnington [aut, cre], Phil Harvey [aut]
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>

Diff between exifr versions 0.2.1 dated 2017-10-14 and 0.2.2 dated 2018-08-19

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New package rcss with initial version 1.6
Package: rcss
Type: Package
Title: Convex Switching Systems
Version: 1.6
Date: 2018-08-19
Author: Jeremy Yee and Juri Hinz
Maintainer: Jeremy Yee <jeremyyee@outlook.com.au>
Description: The numerical treatment of optimal switching problems in a finite time setting when the state evolves as a controlled Markov chain consisting of a uncontrolled continuous component following linear dynamics and a controlled Markov chain taking values in a finite set. The reward functions are assumed to be convex and Lipschitz continuous in the continuous state. The action set is finite.
License: GPL
Imports: Rcpp (>= 0.12.18), nabor(>= 0.5.0)
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
Packaged: 2018-08-19 06:33:49 UTC; jeremy
Repository: CRAN
Date/Publication: 2018-08-19 16:10:02 UTC

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Package cvar updated to version 0.2-0 with previous version 0.1-1 dated 2018-04-09

Title: Compute Expected Shortfall and Value at Risk for Continuous Distributions
Description: Compute expected shortfall (ES) and Value at Risk (VaR) from a quantile function, distribution function, random number generator or probability density function. ES is also known as Conditional Value at Risk (CVaR). Virtually any continuous distribution can be specified. The functions are vectorized over the arguments. The computations are done directly from the definitions, see e.g. Acerbi and Tasche (2002) <doi:10.1111/1468-0300.00091>.
Author: Georgi N. Boshnakov [aut, cre]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>

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Package crqa updated to version 1.0.8 with previous version 1.0.7 dated 2018-06-06

Title: Cross-Recurrence Quantification Analysis for Categorical and Continuous Time-Series
Description: Cross-recurrence quantification analysis of two time-series, of either categorical or continuous values. It provides different methods for profiling cross-recurrence, i.e., only looking at the diagonal recurrent points, as well as more in-depth measures of the whole cross-recurrence plot, e.g., recurrence rate. Please refer to by Coco and Dale (2014) <doi:10.3389/fpsyg.2014.00510> for further details about the method.
Author: Moreno I. Coco and Rick Dale with contributions of James D. Dixon and John Nash
Maintainer: Moreno I. Coco <moreno.cocoi@gmail.com>

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Package cocktailApp updated to version 0.2.0 with previous version 0.1.0 dated 2018-07-05

Title: 'shiny' App to Discover Cocktails
Description: A 'shiny' app to discover cocktails. The app allows one to search for cocktails by ingredient, filter on rating, and number of ingredients. The package also contains data with the ingredients of nearly 16 thousand cocktails scraped from the web.
Author: Steven E. Pav [aut, cre] (<https://orcid.org/0000-0002-4197-6195>)
Maintainer: Steven E. Pav <shabbychef@gmail.com>

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Package UCSCXenaTools updated to version 0.2.2 with previous version 0.2.1 dated 2018-08-17

Title: Download and Explore Datasets from UCSC Xena Data Hubs
Description: Download and explore datasets from UCSC Xena data hubs, which are a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others. Databases are normalized so they can be combined, linked, filtered, explored and downloaded. This package is based on 'XenaR' package.
Author: Shixiang Wang [aut, cre], Martin Morgan [aut]
Maintainer: Shixiang Wang <w_shixiang@163.com>

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Package IPEC updated to version 0.1.2 with previous version 0.1.1 dated 2018-08-19

Title: Root Mean Square Curvature Calculation
Description: Calculates the RMS intrinsic and parameter-effects curvatures of a nonlinear regression model.
Author: Peijian Shi, Peter Ridland, David A. Ratkowsky, Yang Li
Maintainer: Peijian Shi <peijianshi@gmail.com>

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Package GetLattesData updated to version 1.1 with previous version 1.0 dated 2018-08-13

Title: Reading Bibliometric Data from Lattes Platform
Description: A simple API for downloading and reading xml data directly from Lattes <http://lattes.cnpq.br/>.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>

Diff between GetLattesData versions 1.0 dated 2018-08-13 and 1.1 dated 2018-08-19

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Package sugrrants updated to version 0.1.5 with previous version 0.1.4 dated 2018-07-26

Title: Supporting Graphs for Analysing Time Series
Description: Provides 'ggplot2' graphics for analysing time series data. It aims to fit into the 'tidyverse' and grammar of graphics framework for handling temporal data.
Author: Earo Wang [aut, cre] (<https://orcid.org/0000-0001-6448-5260>), Di Cook [aut, ths] (<https://orcid.org/0000-0002-3813-7155>), Rob Hyndman [aut, ths] (<https://orcid.org/0000-0002-2140-5352>)
Maintainer: Earo Wang <earo.wang@gmail.com>

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Package XML updated to version 3.98-1.16 with previous version 3.98-1.15 dated 2018-08-10

Title: Tools for Parsing and Generating XML Within R and S-Plus
Description: Many approaches for both reading and creating XML (and HTML) documents (including DTDs), both local and accessible via HTTP or FTP. Also offers access to an 'XPath' "interpreter".
Author: Duncan Temple Lang and the CRAN Team
Maintainer: ORPHANED

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Package timetk updated to version 0.1.1.1 with previous version 0.1.1 dated 2018-05-14

Title: A Tool Kit for Working with Time Series in R
Description: Get the time series index, signature, and summary from time series objects and time-based tibbles. Create future time series based on properties of existing time series index. Coerce between time-based tibbles ('tbl') and 'xts', 'zoo', and 'ts'.
Author: Matt Dancho [aut, cre], Davis Vaughan [aut]
Maintainer: ORPHANED

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Package sweep updated to version 0.2.1.1 with previous version 0.2.1 dated 2018-03-03

Title: Tidy Tools for Forecasting
Description: Tidies up the forecasting modeling and prediction work flow, extends the 'broom' package with 'sw_tidy', 'sw_glance', 'sw_augment', and 'sw_tidy_decomp' functions for various forecasting models, and enables converting 'forecast' objects to "tidy" data frames with 'sw_sweep'.
Author: Matt Dancho [aut, cre], Davis Vaughan [aut]
Maintainer: ORPHANED

Diff between sweep versions 0.2.1 dated 2018-03-03 and 0.2.1.1 dated 2018-08-19

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Package mudata2 updated to version 1.0.2.1 with previous version 1.0.2 dated 2018-04-09

Title: Interchange Tools for Multi-Parameter Spatiotemporal Data
Description: Formatting and structuring multi-parameter spatiotemporal data is often a time-consuming task. This package offers functions and data structures designed to easily organize and visualize these data for applications in geology, paleolimnology, dendrochronology, and paleoclimate. See Dunnington and Spooner (2018) <doi:10.1139/facets-2017-0026>.
Author: Dewey Dunnington [aut, cre]
Maintainer: ORPHANED

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Package mockery updated to version 0.4.1.1 with previous version 0.4.1 dated 2017-11-10

Title: Mocking Library for R
Description: The two main functionalities of this package are creating mock objects (functions) and selectively intercepting calls to a given function that originate in some other function. It can be used with any testing framework available for R. Mock objects can be injected with either this package's own stub() function or a similar with_mock() facility present in the testthat package.
Author: Noam Finkelstein [aut, cre], Lukasz Bartnik [aut]
Maintainer: ORPHANED

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Package lazyrmd updated to version 0.2.0.1 with previous version 0.2.0 dated 2016-10-07

Title: Render R Markdown Outputs Lazily
Description: An R Markdown html document format that provides the ability to lazily load plot outputs as the user scrolls over them. This is useful for large R Markdown documents with many plots, as it allows for a fast initial page load and defers loading of individual graphics to the time that the user navigates near them.
Author: Ryan Hafen [aut, cre], Barret Schloerke [aut], jQuery Foundation [cph] (jQuery.js library), Sourcey [cph] (recliner.js library)
Maintainer: ORPHANED

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Package hrbrthemes updated to version 0.5.0.1 with previous version 0.5.0 dated 2018-04-24

Title: Additional Themes, Theme Components and Utilities for 'ggplot2'
Description: A compilation of extra 'ggplot2' themes, scales and utilities, including a spell check function for plot label fields and an overall emphasis on typography. A copy of the 'Google' font 'Roboto Condensed' <https://github.com/google/roboto/> is also included along with a copy of the 'IBM' 'Plex Sans' <https://github.com/IBM/type> and 'Titillium Web' <https://fonts.google.com/specimen/Titillium+Web> fonts are also included to support their respective typography-oriented themes.
Author: Bob Rudis [aut, cre] (<https://orcid.org/0000-0001-5670-2640>), Patrick Kennedy [ctb], Philipp Reiner [ctb], Dan Wilson [ctb] (Secondary axis support), Xavier Adam [ctb], Google [cph] (Roboto Condensed & Titillium Web Fonts), IBM [cph] (Plex Sans Font), Jacob Barnett [ctb], Thomas J. Leeper [ctb] (<https://orcid.org/0000-0003-4097-6326>)
Maintainer: ORPHANED

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Package geogrid updated to version 0.1.0.1 with previous version 0.1.0 dated 2018-02-20

Title: Turn Geospatial Polygons into Regular or Hexagonal Grids
Description: Turn irregular polygons (such as geographical regions) into regular or hexagonal grids. This package enables the generation of regular (square) and hexagonal grids through the package 'sp' and then assigns the content of the existing polygons to the new grid using the Hungarian algorithm, Kuhn (1955) (<doi:10.1007/978-3-540-68279-0_2>). This prevents the need for manual generation of hexagonal grids or regular grids that are supposed to reflect existing geography.
Author: Joseph Bailey [aut, cre], Ryan Hafen [ctb], Lars Simon Zehnder [ctb] (RcppArmadillo implmentation of Munkres' Assignment Algorithm)
Maintainer: ORPHANED

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Package dwapi updated to version 0.1.3.1 with previous version 0.1.3 dated 2018-02-23

Title: A Client for 'data.world' REST API
Description: A set of wrapper functions for 'data.world' REST API endpoints <https://apidocs.data.world>.
Author: Rafael Pereira [aut, cre], Triet Le [aut], Bryon Jacob [aut], Scott Came [aut]
Maintainer: ORPHANED

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Package datadr updated to version 0.8.6.1 with previous version 0.8.6 dated 2016-10-02

Title: Divide and Recombine for Large, Complex Data
Description: Methods for dividing data into subsets, applying analytical methods to the subsets, and recombining the results. Comes with a generic MapReduce interface as well. Works with key-value pairs stored in memory, on local disk, or on HDFS, in the latter case using the R and Hadoop Integrated Programming Environment (RHIPE).
Author: Ryan Hafen [aut, cre], Landon Sego [ctb]
Maintainer: ORPHANED

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Package did (with last version 1.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2018-07-11 1.1.0
2018-04-03 1.0.0

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Package simcausal (with last version 0.5.4) was removed from CRAN

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2017-10-08 0.5.4
2016-12-19 0.5.3
2016-05-25 0.5.1
2016-02-20 0.5.0
2015-09-21 0.4.0
2015-08-24 0.3.0
2015-06-12 0.2.0
2015-05-16 0.1

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Package temperatureresponse (with last version 0.1) was removed from CRAN

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2017-10-11 0.1

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Package nlstimedist (with last version 1.1.1) was removed from CRAN

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2017-06-06 1.1.1
2016-12-02 1.0.4
2016-09-12 1.0.1

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Package MBTAr (with last version 1.0.1) was removed from CRAN

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2015-09-18 1.0.1
2015-07-28 1.0.0

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Package CosmoPhotoz (with last version 0.1) was removed from CRAN

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2014-08-24 0.1

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Package ccfa (with last version 1.0.0) was removed from CRAN

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2017-11-29 1.0.0

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Package latticeDensity updated to version 1.1.0 with previous version 1.0.7 dated 2012-01-07

Title: Density Estimation and Nonparametric Regression on Irregular Regions
Description: Functions that compute the lattice-based density estimator of Barry and McIntyre, which accounts for point processes in two-dimensional regions with irregular boundaries and holes. The package also implements two-dimensional non-parametric regression for similar regions.
Author: Ronald Barry <rpbarry@alaska.edu>
Maintainer: Ronald Barry <rpbarry@alaska.edu>

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Package IPEC updated to version 0.1.1 with previous version 0.1.0 dated 2018-07-03

Title: Root Mean Square Curvature Calculation
Description: Calculates the RMS intrinsic and parameter-effects curvatures of a nonlinear regression model.
Author: Peijian Shi, Peter Ridland, David A. Ratkowsky, Yang Li
Maintainer: Peijian Shi <peijianshi@gmail.com>

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Package vein updated to version 0.4.2 with previous version 0.3.35 dated 2018-06-11

Title: Vehicular Emissions Inventories
Description: Elaboration of vehicular emissions inventories, consisting in four stages, pre-processing activity data, preparing emissions factors, estimating the emissions and post-processing of emissions in maps and databases. More details in Ibarra-Espinosa et al (2018) <doi:10.5194/gmd-11-2209-2018>.
Author: Sergio Ibarra-Espinosa [aut, cre] (<https://orcid.org/0000-0002-3162-1905>), Daniel Schuch [aut] (<https://orcid.org/0000-0001-5977-4519>)
Maintainer: Sergio Ibarra-Espinosa <sergio.ibarra@usp.br>

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Package microplot updated to version 1.0-42 with previous version 1.0-41 dated 2018-07-18

Title: Microplots (Sparklines) in 'LaTeX', 'Word', 'HTML', 'Excel'
Description: The microplot function writes a set of R graphics files to be used as microplots (sparklines) in tables in either 'LaTeX', 'HTML', 'Word', or 'Excel' files. For 'LaTeX', we provide methods for the Hmisc::latex() generic function to construct 'latex' tabular environments which include the graphs. These can be used directly with the operating system 'pdflatex' or 'latex' command, or by using one of 'Sweave', 'knitr', 'rmarkdown', or 'Emacs org-mode' as an intermediary. For 'MS Word', the msWord() function uses the 'flextable' package to construct 'Word' tables which include the graphs. There are several distinct approaches for constructing HTML files. The simplest is to use the msWord() function with argument filetype="html". Alternatively, use either 'Emacs org-mode' or the htmlTable::htmlTable() function to construct an 'HTML' file containing tables which include the graphs. See the documentation for our as.htmlimg() function. For 'Excel' use on 'Windows', the file examples/irisExcel.xls includes 'VBA' code which brings the individual panels into individual cells in the spreadsheet. Examples in the examples and demo subdirectories are shown with 'lattice' graphics, 'ggplot2' graphics, and 'base' graphics. Examples for 'LaTeX' include 'Sweave' (both 'LaTeX'-style and 'Noweb'-style), 'knitr', 'emacs org-mode', and 'rmarkdown' input files and their 'pdf' output files. Examples for 'HTML' include 'org-mode' and 'Rmd' input files and their webarchive 'HTML' output files. In addition, the as.orgtable() function can display a data.frame in an 'org-mode' document. The examples for 'MS Word' (with either filetype="docx" or filetype="html") work with all operating systems. The package does not require the installation of 'LaTeX' or 'MS Word' to be able to write '.tex' or '.docx' files.
Author: Richard M. Heiberger, with contributions from Karen Byron and Nooreen Dabbish.
Maintainer: Richard M. Heiberger <rmh@temple.edu>

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Package ELYP updated to version 0.7-5 with previous version 0.7-3 dated 2015-08-07

Title: Empirical Likelihood Analysis for the Cox Model and Yang-Prentice (2005) Model
Description: Empirical likelihood ratio tests for the Yang and Prentice (short/long term hazards ratio) models. Empirical likelihood tests within a Cox model, for parameters defined via both baseline hazard function and regression parameters.
Author: Mai Zhou
Maintainer: Mai Zhou <mai@ms.uky.edu>

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Package SteinerNet updated to version 3.0.1 with previous version 3.0.0 dated 2018-06-25

Title: Steiner Tree Approach for Graph Analysis
Description: A set of functions for finding and analysing Steiner trees. It has applications in biological pathway network analysis. Sadeghi (2013) <doi:10.1186/1471-2105-14-144>.
Author: Afshin Sadeghi <sadeghi.afshin@gmail.com>
Maintainer: Aleksei Krasikov <krasikov.as@phystech.edu>

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 man/steinertree.Rd               |   12 --
 vignettes/tutorial.html          |   38 +++---
 12 files changed, 191 insertions(+), 128 deletions(-)

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Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.