Title: Interface to 'TensorFlow' Estimators
Description: Interface to 'TensorFlow' Estimators
<https://www.tensorflow.org/programmers_guide/estimators>, a high-level
API that provides implementations of many different model types
including linear models and deep neural networks.
Author: JJ Allaire [aut],
Yuan Tang [aut] (<https://orcid.org/0000-0001-5243-233X>),
Kevin Ushey [aut],
Kevin Kuo [aut, cre] (<https://orcid.org/0000-0001-7803-7901>),
Daniel Falbel [ctb, cph],
RStudio [cph, fnd],
Google Inc. [cph]
Maintainer: Kevin Kuo <kevin.kuo@rstudio.com>
Diff between tfestimators versions 1.5 dated 2018-01-18 and 1.9.0 dated 2018-08-27
tfestimators-1.5/tfestimators/inst/python/estimatortools/functions.py |only tfestimators-1.9.0/tfestimators/DESCRIPTION | 30 tfestimators-1.9.0/tfestimators/MD5 | 151 +- tfestimators-1.9.0/tfestimators/NAMESPACE | 2 tfestimators-1.9.0/tfestimators/NEWS.md |only tfestimators-1.9.0/tfestimators/R/boosted_trees_estimators.R |only tfestimators-1.9.0/tfestimators/R/dnn_estimators.R | 16 tfestimators-1.9.0/tfestimators/R/dnn_linear_combined_estimators.R | 16 tfestimators-1.9.0/tfestimators/R/feature_columns.R | 20 tfestimators-1.9.0/tfestimators/R/input_fn.R | 20 tfestimators-1.9.0/tfestimators/R/linear_estimators.R | 8 tfestimators-1.9.0/tfestimators/R/preconditions.R | 23 tfestimators-1.9.0/tfestimators/R/session_run_hooks_builtin_wrappers.R | 18 tfestimators-1.9.0/tfestimators/R/tf_custom_estimator.R | 16 tfestimators-1.9.0/tfestimators/R/tf_estimator.R | 36 tfestimators-1.9.0/tfestimators/R/train_and_evaluate.R | 8 tfestimators-1.9.0/tfestimators/build/vignette.rds |binary tfestimators-1.9.0/tfestimators/inst/CITATION | 6 tfestimators-1.9.0/tfestimators/inst/doc/creating_estimators.html | 516 +++++-- tfestimators-1.9.0/tfestimators/inst/doc/dataset_api.html | 368 ++++- tfestimators-1.9.0/tfestimators/inst/doc/estimator_basics.html | 392 ++++- tfestimators-1.9.0/tfestimators/inst/doc/feature_columns.html | 336 +++- tfestimators-1.9.0/tfestimators/inst/doc/input_functions.html | 356 ++++- tfestimators-1.9.0/tfestimators/inst/doc/parsing_spec.html | 358 ++++- tfestimators-1.9.0/tfestimators/inst/doc/run_hooks.html | 386 ++++- tfestimators-1.9.0/tfestimators/inst/doc/tensorboard.html | 305 +++- tfestimators-1.9.0/tfestimators/inst/doc/tensorflow_layers.html | 696 ++++++---- tfestimators-1.9.0/tfestimators/inst/python/estimatortools/__init__.pyc |binary tfestimators-1.9.0/tfestimators/inst/python/estimatortools/functions.pyc |binary tfestimators-1.9.0/tfestimators/inst/python/estimatortools/session_run_hooks.pyc |binary tfestimators-1.9.0/tfestimators/man/boosted_trees_estimators.Rd |only tfestimators-1.9.0/tfestimators/man/classifier_parse_example_spec.Rd | 1 tfestimators-1.9.0/tfestimators/man/column_bucketized.Rd | 1 tfestimators-1.9.0/tfestimators/man/column_categorical_weighted.Rd | 1 tfestimators-1.9.0/tfestimators/man/column_categorical_with_hash_bucket.Rd | 4 tfestimators-1.9.0/tfestimators/man/column_categorical_with_identity.Rd | 1 tfestimators-1.9.0/tfestimators/man/column_categorical_with_vocabulary_file.Rd | 6 tfestimators-1.9.0/tfestimators/man/column_categorical_with_vocabulary_list.Rd | 5 tfestimators-1.9.0/tfestimators/man/column_crossed.Rd | 1 tfestimators-1.9.0/tfestimators/man/column_embedding.Rd | 1 tfestimators-1.9.0/tfestimators/man/column_numeric.Rd | 1 tfestimators-1.9.0/tfestimators/man/dnn_estimators.Rd | 12 tfestimators-1.9.0/tfestimators/man/dnn_linear_combined_estimators.Rd | 19 tfestimators-1.9.0/tfestimators/man/estimator.Rd | 1 tfestimators-1.9.0/tfestimators/man/estimator_spec.Rd | 8 tfestimators-1.9.0/tfestimators/man/eval_spec.Rd | 1 tfestimators-1.9.0/tfestimators/man/evaluate.tf_estimator.Rd | 5 tfestimators-1.9.0/tfestimators/man/export_savedmodel.tf_estimator.Rd | 6 tfestimators-1.9.0/tfestimators/man/graph_keys.Rd | 1 tfestimators-1.9.0/tfestimators/man/hook_checkpoint_saver.Rd | 6 tfestimators-1.9.0/tfestimators/man/hook_global_step_waiter.Rd | 1 tfestimators-1.9.0/tfestimators/man/hook_history_saver.Rd | 1 tfestimators-1.9.0/tfestimators/man/hook_logging_tensor.Rd | 1 tfestimators-1.9.0/tfestimators/man/hook_nan_tensor.Rd | 1 tfestimators-1.9.0/tfestimators/man/hook_progress_bar.Rd | 1 tfestimators-1.9.0/tfestimators/man/hook_step_counter.Rd | 1 tfestimators-1.9.0/tfestimators/man/hook_stop_at_step.Rd | 1 tfestimators-1.9.0/tfestimators/man/hook_summary_saver.Rd | 6 tfestimators-1.9.0/tfestimators/man/input_fn.Rd | 8 tfestimators-1.9.0/tfestimators/man/input_layer.Rd | 1 tfestimators-1.9.0/tfestimators/man/latest_checkpoint.Rd | 1 tfestimators-1.9.0/tfestimators/man/linear_estimators.Rd | 12 tfestimators-1.9.0/tfestimators/man/metric_keys.Rd | 1 tfestimators-1.9.0/tfestimators/man/mode_keys.Rd | 1 tfestimators-1.9.0/tfestimators/man/numpy_input_fn.Rd | 1 tfestimators-1.9.0/tfestimators/man/plot.tf_estimator_history.Rd | 8 tfestimators-1.9.0/tfestimators/man/predict.tf_estimator.Rd | 8 tfestimators-1.9.0/tfestimators/man/prediction_keys.Rd | 1 tfestimators-1.9.0/tfestimators/man/reexports.Rd | 20 tfestimators-1.9.0/tfestimators/man/regressor_parse_example_spec.Rd | 5 tfestimators-1.9.0/tfestimators/man/run_config.Rd | 1 tfestimators-1.9.0/tfestimators/man/session_run_hook.Rd | 5 tfestimators-1.9.0/tfestimators/man/task_type.Rd | 1 tfestimators-1.9.0/tfestimators/man/train.tf_estimator.Rd | 16 tfestimators-1.9.0/tfestimators/man/train_and_evaluate.tf_estimator.Rd | 4 tfestimators-1.9.0/tfestimators/man/train_spec.Rd | 1 tfestimators-1.9.0/tfestimators/tests/testthat/helper-utils.R | 31 tfestimators-1.9.0/tfestimators/tests/testthat/test-boosted-trees-estimators.R |only tfestimators-1.9.0/tfestimators/tests/testthat/test-tf-models.R | 3 79 files changed, 3135 insertions(+), 1171 deletions(-)
Title: Create Visual Predictive Checks
Description: Visual predictive checks are a commonly used diagnostic plot in pharmacometrics, showing how certain statistics (percentiles) for observed data compare to those same statistics for data simulated from a model. The package can generate VPCs for continuous, categorical, censored, and (repeated) time-to-event data.
Author: Ron Keizer <ronkeizer@gmail.com>
Maintainer: Ron Keizer <ronkeizer@gmail.com>
Diff between vpc versions 1.0.1 dated 2018-01-23 and 1.1.0 dated 2018-08-27
DESCRIPTION | 8 ++--- MD5 | 16 +++++------ NAMESPACE | 3 ++ R/binning.R | 11 ++++++- R/create_vpc_theme.R | 1 R/plot_vpc.R | 16 +++++------ R/vpc.R | 73 ++++++++++++++++++++++++++++++--------------------- man/auto_bin.Rd | 5 ++- man/vpc.Rd | 16 ++++++++--- 9 files changed, 93 insertions(+), 56 deletions(-)
Title: Interface to the Google Cloud Machine Learning Platform
Description: Interface to the Google Cloud Machine Learning Platform
<https://cloud.google.com/ml-engine>, which provides cloud tools for training machine
learning models.
Author: Javier Luraschi [aut, cre],
JJ Allaire [aut],
Kevin Ushey [aut],
RStudio [cph]
Maintainer: Javier Luraschi <javier@rstudio.com>
Diff between cloudml versions 0.5.1 dated 2018-06-12 and 0.6.0 dated 2018-08-27
DESCRIPTION | 12 MD5 | 66 ++--- NAMESPACE | 3 NEWS.md | 13 + R/gcloud-install.R | 6 R/gcloud-storage.R | 75 +++++ R/jobs.R | 2 R/terminal.R | 9 R/utils.R | 4 build/vignette.rds |binary inst/cloudml/cloudml/deploy.R | 2 inst/doc/deployment.html | 382 ++++++++++++++++++++---------- inst/doc/getting_started.html | 396 +++++++++++++++++++++---------- inst/doc/storage.R | 16 + inst/doc/storage.Rmd | 28 +- inst/doc/storage.html | 426 +++++++++++++++++++++++---------- inst/doc/training.html | 532 ++++++++++++++++++++++++++++-------------- inst/doc/tuning.html | 504 ++++++++++++++++++++++++++------------- man/cloudml-package.Rd | 4 man/cloudml_deploy.Rd | 1 man/cloudml_predict.Rd | 1 man/cloudml_train.Rd | 1 man/gcloud_init.Rd | 1 man/gcloud_install.Rd | 1 man/gcloud_terminal.Rd | 1 man/gs_data_dir.Rd |only man/gs_data_dir_local.Rd |only man/gs_local_dir.Rd | 25 - man/job_cancel.Rd | 1 man/job_collect.Rd | 1 man/job_list.Rd | 5 man/job_status.Rd | 1 man/job_stream_logs.Rd | 1 man/job_trials.Rd | 1 vignettes/storage.Rmd | 28 +- 35 files changed, 1751 insertions(+), 798 deletions(-)
Title: Model Audit - Verification, Validation, and Error Analysis
Description: Provides an easy to use unified interface for creating validation plots for any model.
The 'auditor' helps to avoid repetitive work consisting of writing code needed to create residual plots.
This visualizations allow to asses and compare the goodness of fit, performance, and similarity of models.
Author: Alicja Gosiewska [aut, cre],
Przemyslaw Biecek [aut, ths]
Maintainer: Alicja Gosiewska <alicjagosiewska@gmail.com>
Diff between auditor versions 0.2.1 dated 2018-05-13 and 0.3.0 dated 2018-08-27
auditor-0.2.1/auditor/R/plotCumulativeGain.R |only auditor-0.2.1/auditor/R/scoreGQ.R |only auditor-0.2.1/auditor/man/plotCumulativeGain.Rd |only auditor-0.2.1/auditor/man/scoreGQ.Rd |only auditor-0.3.0/auditor/DESCRIPTION | 16 - auditor-0.3.0/auditor/MD5 | 167 +++++++++------ auditor-0.3.0/auditor/NAMESPACE | 17 + auditor-0.3.0/auditor/NEWS.md | 7 auditor-0.3.0/auditor/R/audit.R | 8 auditor-0.3.0/auditor/R/auditorData.R |only auditor-0.3.0/auditor/R/error.R | 3 auditor-0.3.0/auditor/R/miscellaneous_functions.R | 18 + auditor-0.3.0/auditor/R/modelEvaluation.R |only auditor-0.3.0/auditor/R/modelFit.R |only auditor-0.3.0/auditor/R/modelPerformance.R |only auditor-0.3.0/auditor/R/modelResiduals.R |only auditor-0.3.0/auditor/R/observationInfluence.R |only auditor-0.3.0/auditor/R/plotACF.R | 44 +-- auditor-0.3.0/auditor/R/plotAutocorrelation.R | 45 ++-- auditor-0.3.0/auditor/R/plotCooksDistance.R | 24 +- auditor-0.3.0/auditor/R/plotHalfNormal.R | 89 ------- auditor-0.3.0/auditor/R/plotLIFT.R | 72 ++---- auditor-0.3.0/auditor/R/plotModelCorrelation.R | 40 +-- auditor-0.3.0/auditor/R/plotModelPCA.R | 30 +- auditor-0.3.0/auditor/R/plotModelRanking.R | 100 ++++---- auditor-0.3.0/auditor/R/plotPrediction.R | 63 +++-- auditor-0.3.0/auditor/R/plotREC.R | 17 - auditor-0.3.0/auditor/R/plotROC.R | 21 - auditor-0.3.0/auditor/R/plotRROC.R | 15 - auditor-0.3.0/auditor/R/plotResidual.R | 58 +++-- auditor-0.3.0/auditor/R/plotResidualBoxplot.R |only auditor-0.3.0/auditor/R/plotResidualDensity.R | 50 ++-- auditor-0.3.0/auditor/R/plotScaleLocation.R | 70 +++--- auditor-0.3.0/auditor/R/plotTwoSidedECDF.R | 13 - auditor-0.3.0/auditor/R/plot_modelAudit.R | 46 ++-- auditor-0.3.0/auditor/R/plot_modelFit.R |only auditor-0.3.0/auditor/R/plot_modelPerformance.R |only auditor-0.3.0/auditor/R/plot_modelResiduals.R |only auditor-0.3.0/auditor/R/plot_observationInfluence.R |only auditor-0.3.0/auditor/R/predict_functions.R | 24 -- auditor-0.3.0/auditor/R/residual_functions.R | 4 auditor-0.3.0/auditor/R/score.R | 12 - auditor-0.3.0/auditor/R/scoreCooksDistance.R | 2 auditor-0.3.0/auditor/R/scoreDW.R | 6 auditor-0.3.0/auditor/R/scoreHalfNormal.R | 8 auditor-0.3.0/auditor/R/scoreMAE.R | 4 auditor-0.3.0/auditor/R/scoreMSE.R | 4 auditor-0.3.0/auditor/R/scorePeak.R |only auditor-0.3.0/auditor/R/scoreREC.R | 3 auditor-0.3.0/auditor/R/scoreRMSE.R | 2 auditor-0.3.0/auditor/R/scoreROC.R | 1 auditor-0.3.0/auditor/R/scoreRROC.R | 2 auditor-0.3.0/auditor/R/scoreRuns.R | 5 auditor-0.3.0/auditor/build |only auditor-0.3.0/auditor/data |only auditor-0.3.0/auditor/inst |only auditor-0.3.0/auditor/man/audit.Rd | 2 auditor-0.3.0/auditor/man/auditorData.Rd |only auditor-0.3.0/auditor/man/modelEvaluation.Rd |only auditor-0.3.0/auditor/man/modelFit.Rd |only auditor-0.3.0/auditor/man/modelPerformance.Rd |only auditor-0.3.0/auditor/man/modelResiduals.Rd |only auditor-0.3.0/auditor/man/observationInfluence.Rd |only auditor-0.3.0/auditor/man/plot.modelAudit.Rd | 35 ++- auditor-0.3.0/auditor/man/plotACF.Rd | 6 auditor-0.3.0/auditor/man/plotAutocorrelation.Rd | 8 auditor-0.3.0/auditor/man/plotHalfNormal.Rd | 2 auditor-0.3.0/auditor/man/plotLIFT.Rd | 16 - auditor-0.3.0/auditor/man/plotModelCorrelation.Rd | 4 auditor-0.3.0/auditor/man/plotModelPCA.Rd | 4 auditor-0.3.0/auditor/man/plotModelRanking.Rd | 8 auditor-0.3.0/auditor/man/plotPrediction.Rd | 15 - auditor-0.3.0/auditor/man/plotREC.Rd | 4 auditor-0.3.0/auditor/man/plotROC.Rd | 4 auditor-0.3.0/auditor/man/plotRROC.Rd | 4 auditor-0.3.0/auditor/man/plotResidual.Rd | 15 + auditor-0.3.0/auditor/man/plotResidualBoxplot.Rd |only auditor-0.3.0/auditor/man/plotResidualDensity.Rd | 6 auditor-0.3.0/auditor/man/plotScaleLocation.Rd | 13 - auditor-0.3.0/auditor/man/score.Rd | 4 auditor-0.3.0/auditor/man/scoreDW.Rd | 2 auditor-0.3.0/auditor/man/scoreHalfNormal.Rd | 2 auditor-0.3.0/auditor/man/scoreMAE.Rd | 2 auditor-0.3.0/auditor/man/scoreMSE.Rd | 2 auditor-0.3.0/auditor/man/scorePeak.Rd |only auditor-0.3.0/auditor/tests/testthat/objects_for_tests.R | 4 auditor-0.3.0/auditor/tests/testthat/test_errors.R |only auditor-0.3.0/auditor/tests/testthat/test_plotsR.R | 21 + auditor-0.3.0/auditor/tests/testthat/test_scores.R | 12 - auditor-0.3.0/auditor/vignettes |only 90 files changed, 711 insertions(+), 594 deletions(-)
Title: Quickly Create Elegant Regression Results Tables and Plots when
Modelling
Description: Generate regression results tables and plots in final
format for publication. Explore models and export directly to PDF
and 'Word' using 'RMarkdown'.
Author: Ewen Harrison, Tom Drake, Riinu Ots
Maintainer: Ewen Harrison <ewen.harrison@ed.ac.uk>
Diff between finalfit versions 0.8.4 dated 2018-08-01 and 0.8.5 dated 2018-08-27
DESCRIPTION | 14 - MD5 | 81 +++--- NAMESPACE | 7 NEWS | 10 R/finalfit_internal_functions.R | 73 +++++ R/missing_compare.R | 3 R/missing_plot.R | 168 ++++++++++++- R/summaryfactorlist.R | 7 inst/doc/finalfit_basics.html | 490 ++++++++++++++++++++++++++++------------ man/boot_compare.Rd | 3 man/boot_predict.Rd | 8 man/condense_fit.Rd | 6 man/coxphmulti.Rd | 1 man/coxphuni.Rd | 1 man/extract_fit.Rd | 4 man/extract_labels.Rd |only man/ff_formula.Rd |only man/ff_glimpse.Rd | 3 man/ff_newdata.Rd | 5 man/finalfit.Rd | 13 - man/fit2df.Rd | 1 man/glmmixed.Rd | 1 man/glmmulti.Rd | 1 man/glmmulti_boot.Rd | 1 man/glmuni.Rd | 1 man/hr_plot.Rd | 5 man/lmmixed.Rd | 1 man/lmmulti.Rd | 1 man/lmuni.Rd | 1 man/missing_compare.Rd | 3 man/missing_df.Rd |only man/missing_pairs.Rd |only man/missing_plot.Rd | 19 - man/or_plot.Rd | 8 man/remove_labels.Rd |only man/summary_factorlist.Rd | 1 man/summary_factorlist0.Rd | 4 man/summary_factorlist1.Rd | 4 man/summary_factorlist2.Rd | 4 man/summary_factorlist3.Rd | 4 man/summary_factorlist4.Rd | 4 man/summary_factorlist5.Rd | 4 man/summary_formula.Rd | 15 - man/surv_plot.Rd | 1 44 files changed, 732 insertions(+), 249 deletions(-)
Title: Tools to Visualize, Manipulate, and Summarize MCMC Output
Description: Performs key functions for MCMC analysis using minimal code - visualizes, manipulates, and summarizes MCMC output. Functions support simple and straightforward subsetting of model parameters within the calls, and produce presentable and 'publication-ready' output. MCMC output may be derived from Bayesian model output fit with JAGS, Stan, or other MCMC samplers.
Author: Casey Youngflesh [aut, cre] (<https://orcid.org/0000-0001-6343-3311>),
Christian Che-Castaldo [ctb],
Tyler Hardy [ctb]
Maintainer: Casey Youngflesh <caseyyoungflesh@gmail.com>
Diff between MCMCvis versions 0.11.0 dated 2018-05-21 and 0.11.2 dated 2018-08-27
DESCRIPTION | 11 MD5 | 28 - NEWS.md | 11 R/MCMCchains.R | 7 R/MCMCplot.R | 24 - R/MCMCpstr.R | 10 R/MCMCtrace.R | 53 ++ R/data.R | 3 build/vignette.rds |binary data/MCMC_data.rda |binary inst/doc/MCMCvis.html | 794 +++++++++++++++++++++++++++---------------- man/MCMCplot.Rd | 10 man/MCMCpstr.Rd | 4 man/MCMCtrace.Rd | 8 tests/testthat/test_master.R | 24 - 15 files changed, 639 insertions(+), 348 deletions(-)
Title: Robust Geostatistical Analysis of Spatial Data
Description: Provides functions for efficiently fitting linear models with
spatially correlated errors by robust and Gaussian (Restricted)
Maximum Likelihood and for computing robust and customary point
and block external-drift Kriging predictions, along with utility
functions for variogram modelling in ad hoc geostatistical analyses,
model building, model evaluation by cross-validation, (conditional)
simulation of Gaussian processes, unbiased back-transformation of
Kriging predictions of log-transformed data.
Author: Andreas Papritz [cre, aut],
Cornelia Schwierz [ctb]
Maintainer: Andreas Papritz <andreas.papritz@env.ethz.ch>
Diff between georob versions 0.3-6 dated 2018-01-26 and 0.3-7 dated 2018-08-27
ChangeLog | 4 + DESCRIPTION | 8 +-- MD5 | 24 ++++----- NEWS | 3 - R/georob.S3methods.R | 106 +++++++------------------------------------ build/vignette.rds |binary inst/doc/georob_vignette.pdf |binary man/cv.georob.Rd | 5 -- man/fit.variogram.model.Rd | 50 +++++++++++--------- man/georobModelBuilding.Rd | 15 +----- man/georobObject.Rd | 13 +++-- man/georobS3methods.Rd | 5 -- man/georobSimulation.Rd | 9 +-- 13 files changed, 88 insertions(+), 154 deletions(-)
Title: R Interface to Access CalPASS API
Description: Implements methods for querying data from CalPASS using its API.
CalPASS Plus. MMAP API V1. <https://mmap.calpassplus.org/docs/index.html>.
Author: Vinh Nguyen [aut, cre]
Maintainer: Vinh Nguyen <nguyenvq714@gmail.com>
Diff between calpassapi versions 0.0.1 dated 2018-08-24 and 0.0.2 dated 2018-08-27
DESCRIPTION | 6 ++--- MD5 | 19 ++++++++-------- NAMESPACE | 1 NEWS |only R/calpassapi.R | 53 +++++++++++++++++++++++++++++++++++++++-------- inst/doc/Tutorial.R | 16 +++++++++++--- inst/doc/Tutorial.Rmd | 29 +++++++++++++++++++++++-- inst/doc/Tutorial.html | 29 +++++++++++++++++++++---- man/calpass_get_token.Rd | 11 +++++++-- man/calpass_query.Rd | 15 ++++++++++--- vignettes/Tutorial.Rmd | 29 +++++++++++++++++++++++-- 11 files changed, 169 insertions(+), 39 deletions(-)
Title: Partial Dependence Plots
Description: A general framework for constructing partial dependence (i.e.,
marginal effect) plots from various types machine learning models in R.
Author: Brandon Greenwell [aut, cre] (<https://orcid.org/0000-0002-8120-0084>)
Maintainer: Brandon Greenwell <greenwell.brandon@gmail.com>
Diff between pdp versions 0.6.0 dated 2017-07-19 and 0.7.0 dated 2018-08-27
pdp-0.6.0/pdp/R/getTrainingData.R |only pdp-0.6.0/pdp/R/isNonGaussianRegression.R |only pdp-0.6.0/pdp/R/predGrid.R |only pdp-0.6.0/pdp/R/superType.R |only pdp-0.6.0/pdp/man/trainCHull.Rd |only pdp-0.6.0/pdp/tools/README-example-rf-1.png |only pdp-0.6.0/pdp/tools/README-example-svm-1.png |only pdp-0.6.0/pdp/tools/pdp-logo-img.R |only pdp-0.6.0/pdp/tools/pdp-logo-img.png |only pdp-0.6.0/pdp/tools/pdp-logo.png |only pdp-0.7.0/pdp/DESCRIPTION | 23 - pdp-0.7.0/pdp/MD5 | 90 +++-- pdp-0.7.0/pdp/NAMESPACE | 3 pdp-0.7.0/pdp/NEWS.md | 136 ++++++-- pdp-0.7.0/pdp/R/autoplot.R | 251 ++++++++------- pdp-0.7.0/pdp/R/data.R | 2 pdp-0.7.0/pdp/R/getIcePredCls.R | 48 +- pdp-0.7.0/pdp/R/getParDepGBM.R | 20 + pdp-0.7.0/pdp/R/getParPredCls.R | 54 ++- pdp-0.7.0/pdp/R/get_training_data.R |only pdp-0.7.0/pdp/R/partial.R | 114 ++++-- pdp-0.7.0/pdp/R/pdp.R | 2 pdp-0.7.0/pdp/R/plotPartial.R | 442 ++++++++++++++++----------- pdp-0.7.0/pdp/R/pred_grid.R |only pdp-0.7.0/pdp/R/progress.R |only pdp-0.7.0/pdp/R/super_type.R |only pdp-0.7.0/pdp/R/topPredictors.R | 1 pdp-0.7.0/pdp/R/utils.R | 85 ++--- pdp-0.7.0/pdp/README.md | 134 +++----- pdp-0.7.0/pdp/man/autoplot.partial.Rd | 21 - pdp-0.7.0/pdp/man/boston.Rd | 2 pdp-0.7.0/pdp/man/figures |only pdp-0.7.0/pdp/man/partial.Rd | 31 + pdp-0.7.0/pdp/man/pdp.Rd | 2 pdp-0.7.0/pdp/man/plotPartial.Rd | 43 +- pdp-0.7.0/pdp/man/progress_progress.Rd |only pdp-0.7.0/pdp/man/trellis.last.object.Rd | 2 pdp-0.7.0/pdp/tests/testthat/test-utils.R | 146 ++++---- pdp-0.7.0/pdp/tools/README-cache |only pdp-0.7.0/pdp/tools/pdp-logo.R |only pdp-0.7.0/pdp/tools/pdp-pkg-bib.R |only pdp-0.7.0/pdp/tools/pdp-pkg.bib |only 42 files changed, 997 insertions(+), 655 deletions(-)
Title: Correlation and Regression Analyses for Randomized Response Data
Description: Univariate and multivariate methods to analyze randomized response
(RR) survey designs (e.g., Warner, S. L. (1965). Randomized response: A
survey technique for eliminating evasive answer bias. Journal of the
American Statistical Association, 60, 63–69, <doi:10.2307/2283137>).
Besides univariate estimates of true proportions, RR variables can be used
for correlations, as dependent variable in a logistic regression (with or
without random effects), or as predictors in a linear regression
(Heck, D. W., & Moshagen, M. (2018). RRreg: An R package for correlation and
regression analyses of randomized response data. Journal of Statistical
Software, 85(2), 1–29, <doi:10.18637/jss.v085.i02>). For simulations and
the estimation of statistical power, RR data can be generated according to
several models. The implemented methods also allow to test the link between
continuous covariates and dishonesty in cheating paradigms such as the
coin-toss or dice-roll task (Moshagen, M., & Hilbig, B. E. (2017).
The statistical analysis of cheating paradigms. Behavior Research Methods,
49, 724–732, <doi:10.3758/s13428-016-0729-x>).
Author: Daniel W. Heck [aut, cre],
Morten Moshagen [aut]
Maintainer: Daniel W. Heck <heck@uni-mannheim.de>
Diff between RRreg versions 0.6.9 dated 2018-07-26 and 0.7.0 dated 2018-08-27
DESCRIPTION | 10 +- MD5 | 26 +++--- NEWS | 8 ++ R/RRlog.R | 141 +++++++++++++++++++++--------------- R/RRlog_fit.R | 12 +-- R/RRmixed.R | 2 inst/doc/Heck_Moshagen_2018_JSS.pdf |binary inst/doc/RRreg.html | 122 +++++++++++++++---------------- man/RRlin.Rd | 4 - man/RRlog.Rd | 50 +++++++++--- man/RRmixed.Rd | 5 - man/RRsimu.Rd | 8 +- man/RRuni.Rd | 3 man/predict.RRlog.Rd | 4 - 14 files changed, 230 insertions(+), 165 deletions(-)
Title: Various Utilities for Microbial Genomics and Metagenomics
Description: A collection of functions for microbial ecology and other
applications of genomics and metagenomics. Companion package for the
Enveomics Collection (Rodriguez-R, L.M. and Konstantinidis, K.T., 2016
<DOI:10.7287/peerj.preprints.1900v1>).
Author: Luis M. Rodriguez-R [aut, cre]
Maintainer: Luis M. Rodriguez-R <lmrodriguezr@gmail.com>
Diff between enveomics.R versions 1.3.2 dated 2018-08-09 and 1.3.3 dated 2018-08-27
DESCRIPTION | 6 ++--- MD5 | 11 +++++---- NAMESPACE | 3 +- R/recplot2.R | 36 ++++++++++++++++++++++++------ README.md | 2 + man/enve.recplot2.extractWindows.Rd | 4 +-- man/enve.recplot2.windowDepthThreshold.Rd |only 7 files changed, 44 insertions(+), 18 deletions(-)
Title: Coalition Probabilities in Multi-Party Democracies
Description: An implementation of a MCMC method to calculate
probabilities for a coalition majority based on survey results,
see Bender and Bauer (2018) <doi:10.21105/joss.00606>.
Author: Andreas Bender [aut, cre] (<https://orcid.org/0000-0001-5628-8611>),
Alexander Bauer [aut] (<https://orcid.org/0000-0003-3495-5131>)
Maintainer: Andreas Bender <andreas.bender@stat.uni-muenchen.de>
Diff between coalitions versions 0.6.2 dated 2018-03-15 and 0.6.4 dated 2018-08-27
DESCRIPTION | 6 - MD5 | 22 ++-- NEWS.md | 8 + R/scrapers.R | 17 ++- README.md | 50 ++++----- build/vignette.rds |binary inst/doc/diagnostic.html | 14 +- inst/doc/pooling.html | 38 +++---- inst/doc/workflow.html | 222 ++++++++++++++++++++--------------------- man/scrape.Rd | 11 +- tests/testthat/test-scrapers.R | 8 + tests/testthat/test-workflow.R | 6 - 12 files changed, 215 insertions(+), 187 deletions(-)
Title: Create Interactive Web Maps with the JavaScript 'Leaflet'
Library
Description: Create and customize interactive maps using the 'Leaflet'
JavaScript library and the 'htmlwidgets' package. These maps can be used
directly from the R console, from 'RStudio', in Shiny applications and R Markdown
documents.
Author: Joe Cheng [aut, cre],
Bhaskar Karambelkar [aut],
Yihui Xie [aut],
Hadley Wickham [ctb],
Kenton Russell [ctb],
Kent Johnson [ctb],
Barret Schloerke [ctb],
jQuery Foundation and contributors [ctb, cph] (jQuery library),
Vladimir Agafonkin [ctb, cph] (Leaflet library),
CloudMade [cph] (Leaflet library),
Leaflet contributors [ctb] (Leaflet library),
Leaflet Providers contributors [ctb, cph] (Leaflet Providers plugin),
Brandon Copeland [ctb, cph] (leaflet-measure plugin),
Joerg Dietrich [ctb, cph] (Leaflet.Terminator plugin),
Benjamin Becquet [ctb, cph] (Leaflet.MagnifyingGlass plugin),
Norkart AS [ctb, cph] (Leaflet.MiniMap plugin),
L. Voogdt [ctb, cph] (Leaflet.awesome-markers plugin),
Daniel Montague [ctb, cph] (Leaflet.EasyButton plugin),
Kartena AB [ctb, cph] (Proj4Leaflet plugin),
Robert Kajic [ctb, cph] (leaflet-locationfilter plugin),
Mapbox [ctb, cph] (leaflet-omnivore plugin),
Michael Bostock [ctb, cph] (topojson),
RStudio [cph]
Maintainer: Joe Cheng <joe@rstudio.com>
Diff between leaflet versions 2.0.1 dated 2018-06-04 and 2.0.2 dated 2018-08-27
DESCRIPTION | 11 +++-- MD5 | 36 +++++++++---------- NEWS | 10 +++++ R/layers.R | 4 +- R/plugin-awesomeMarkers.R | 2 - inst/htmlwidgets/leaflet.js | 10 ++++- man/addAwesomeMarkers.Rd | 6 +-- man/addLegend.Rd | 10 ++--- man/addMiniMap.Rd | 11 +++-- man/addProviderTiles.Rd | 5 +- man/addRasterImage.Rd | 4 +- man/addTerminator.Rd | 4 +- man/awesomeIcons.Rd | 8 ++-- man/colorNumeric.Rd | 11 +++-- man/derivePolygons.Rd | 5 +- man/leaflet.Rd | 8 +--- man/map-layers.Rd | 83 +++++++++++++++++++++++--------------------- man/map-options.Rd | 35 ++++++++++-------- tests/testit/test-colors.R | 2 - 19 files changed, 146 insertions(+), 119 deletions(-)
Title: Missing not at Random Imputation Models for Multiple Imputation
by Chained Equation
Description: Provides imputation models and functions for binary or continuous Missing Not At Random (MNAR) outcomes through the use of the 'mice' package. The mice.impute.hecknorm() function provides imputation model for continuous outcome based on Heckman's model also named sample selection model as described in Galimard et al (2018) and Galimard et al (2016) <doi:10.1002/sim.6902>. The mice.impute.heckprob() function provides imputation model for binary outcome based on bivariate probit model as described in Galimard et al (2018).
Author: Jacques-Emmanuel Galimard [aut, cre] (INSERM, U1153, ECSTRA team),
Matthieu Resche-Rigon [aut] (INSERM, U1153, ECSTRA team)
Maintainer: Jacques-Emmanuel Galimard <jacques-emmanuel.galimard@inserm.fr>
Diff between miceMNAR versions 1.0.1 dated 2018-05-29 and 1.0.2 dated 2018-08-27
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- build/partial.rdb |binary man/MNARargument.Rd | 4 ++-- man/mice.impute.hecknorm.Rd | 4 ++++ man/mice.impute.hecknorm2step.Rd | 2 +- man/mice.impute.heckprob.Rd | 4 ++++ man/miceMNAR-package.Rd | 6 +++--- 8 files changed, 26 insertions(+), 18 deletions(-)
Title: Analytical Tool for Aquatic Respirometry
Description: Calculates metabolic rate of fish and other aquatic organisms measured using
an intermittent-flow respirometry approach. The tool is used to run a set of
graphical QC tests of raw respirometry data, correct it for background r
espiration and chamber effect, filter and extract target values of absolute
and mass-specific metabolic rate. Experimental design should include background
respiration tests and measuring of one or more metabolic rate traits. The package
allows a user to import raw respirometry data obtained from 'AquaResp' (free software),
'AutoResp' (LoligoSystems), 'OxyView' (PreSens), 'Pyro Oxygen Logger' (PyroScience)
and 'Qbox-Aqua' (QubitSystems).
Author: Sergey Morozov [aut, cre],
R.J. Scott McCairns [aut],
Federico Calboli [ctb]
Maintainer: Sergey Morozov <sergey.morozov@helsinki.fi>
Diff between FishResp versions 0.3.0 dated 2018-06-01 and 0.4.0 dated 2018-08-27
DESCRIPTION | 20 - MD5 | 44 ++- NAMESPACE | 11 R/FishResp.R | 2 R/QC.slope.R | 117 ++++++--- R/convert.rMR.R | 567 +++++++++++++++++++++++--------------------- R/convert.respirometry.R | 45 +++ R/import.meas.R | 185 +++++++++++++- R/import.test.R | 65 ++++- R/input.info.R | 7 R/presens.aquaresp.R |only R/pyroscience.aquaresp.R |only inst/extdata/presens |only inst/extdata/pyroscience |only inst/extdata/qbox-aqua |only man/FishResp.Rd | 2 man/QC.slope.Rd | 19 - man/convert.rMR.Rd | 4 man/convert.respirometry.Rd | 4 man/import.meas.Rd | 45 +++ man/import.test.Rd | 21 + man/input.info.Rd | 4 man/presens.aquaresp.Rd |only man/pyroscience.aquaresp.Rd |only 24 files changed, 779 insertions(+), 383 deletions(-)
Title: Feature Selection (Including Multiple Solutions) and Bayesian
Networks
Description: Many feature selection methods for a wide range of response variables, including minimal, statistically-equivalent and equally-predictive feature subsets. Bayesian network algorithms and related functions are also included. The package name 'MXM' stands for "Mens eX Machina", meaning "Mind from the Machine" in Latin. Reference: Feature Selection with the R Package MXM: Discovering Statistically Equivalent Feature Subsets, Lagani, V. and Athineou, G. and Farcomeni, A. and Tsagris, M. and Tsamardinos, I. (2017). Journal of Statistical Software, 80(7). <doi:10.18637/jss.v080.i07>.
Author: Michail Tsagris [aut, cre],
Ioannis Tsamardinos [aut, cph],
Vincenzo Lagani [aut, cph],
Giorgos Athineou [aut],
Giorgos Borboudakis [ctb],
Anna Roumpelaki [ctb]
Maintainer: Michail Tsagris <mtsagris@csd.uoc.gr>
Diff between MXM versions 1.3.8 dated 2018-07-29 and 1.3.9 dated 2018-08-27
MXM-1.3.8/MXM/R/fbed.ordgee.R |only MXM-1.3.8/MXM/R/fbed.ordgee.reps.R |only MXM-1.3.8/MXM/R/testIndGEEOrdinal.R |only MXM-1.3.9/MXM/DESCRIPTION | 10 - MXM-1.3.9/MXM/MD5 | 119 ++++++++-------- MXM-1.3.9/MXM/NAMESPACE | 9 - MXM-1.3.9/MXM/R/InternalMMPC.gee.R | 3 MXM-1.3.9/MXM/R/InternalMMPC.glmm.R | 3 MXM-1.3.9/MXM/R/MMPC.R | 155 ++++++++++----------- MXM-1.3.9/MXM/R/MMPC.gee.R | 23 +-- MXM-1.3.9/MXM/R/SES.R | 113 ++++++++------- MXM-1.3.9/MXM/R/SES.gee.R | 16 -- MXM-1.3.9/MXM/R/beta.bsreg.R | 1 MXM-1.3.9/MXM/R/cond.regs.R | 26 +++ MXM-1.3.9/MXM/R/fbed.gee.reg.R | 11 - MXM-1.3.9/MXM/R/fbed.geelm.R | 2 MXM-1.3.9/MXM/R/fbed.glmm.reg.R | 3 MXM-1.3.9/MXM/R/fbed.lmm.R | 8 - MXM-1.3.9/MXM/R/fbed.lmm.reps.R | 8 - MXM-1.3.9/MXM/R/fbed.lr.R | 6 MXM-1.3.9/MXM/R/fbed.reg.R | 2 MXM-1.3.9/MXM/R/gee.ci.mm.R | 22 +-- MXM-1.3.9/MXM/R/gee.condregs.R | 20 -- MXM-1.3.9/MXM/R/gee.univregs.R | 1 MXM-1.3.9/MXM/R/ma.mmpc.R | 4 MXM-1.3.9/MXM/R/ma.ses.R | 4 MXM-1.3.9/MXM/R/mmpc.gee.model.R | 26 +-- MXM-1.3.9/MXM/R/mmpc.gee2.R | 8 - MXM-1.3.9/MXM/R/mmpc2.R | 182 +++++++++++++------------ MXM-1.3.9/MXM/R/perm.mmpc.R | 2 MXM-1.3.9/MXM/R/perm.ses.R | 2 MXM-1.3.9/MXM/R/ses.gee.model.R | 66 ++------- MXM-1.3.9/MXM/R/test.maker.R | 81 +++++++++-- MXM-1.3.9/MXM/R/testIndGEEGamma.R | 41 ++++- MXM-1.3.9/MXM/R/testIndGEELogistic.R | 44 ++++-- MXM-1.3.9/MXM/R/testIndGEENormLog.R | 44 ++++-- MXM-1.3.9/MXM/R/testIndGEEPois.R | 44 ++++-- MXM-1.3.9/MXM/R/testIndGEEReg.R | 43 ++++- MXM-1.3.9/MXM/R/testIndQPois.R | 19 +- MXM-1.3.9/MXM/R/testIndSPML.R |only MXM-1.3.9/MXM/R/univregs.R | 8 + MXM-1.3.9/MXM/inst/doc/FBED_KVerrou_2_5.Rmd | 2 MXM-1.3.9/MXM/inst/doc/FBED_KVerrou_2_5.html | 8 - MXM-1.3.9/MXM/inst/doc/FS_guide.pdf |binary MXM-1.3.9/MXM/inst/doc/SES_KMVerrou_11_12.Rmd | 2 MXM-1.3.9/MXM/inst/doc/SES_KMVerrou_11_12.html | 38 ++--- MXM-1.3.9/MXM/inst/doc/article.pdf |binary MXM-1.3.9/MXM/inst/doc/guide.pdf |binary MXM-1.3.9/MXM/inst/doc/mxm_mmpc_tutorial.html | 10 - MXM-1.3.9/MXM/man/MXM-package.Rd | 4 MXM-1.3.9/MXM/man/MXMCondIndTests.Rd | 24 ++- MXM-1.3.9/MXM/man/SES.Rd | 4 MXM-1.3.9/MXM/man/SES.glmm.Rd | 124 ++++++++++++----- MXM-1.3.9/MXM/man/cond.regs.Rd | 44 ++++-- MXM-1.3.9/MXM/man/fbed.gee.reg.Rd | 8 - MXM-1.3.9/MXM/man/mmpc.glmm.model.Rd | 30 ++-- MXM-1.3.9/MXM/man/mmpc.glmm2.Rd | 84 ++++++++--- MXM-1.3.9/MXM/man/pc.skel.Rd | 80 +++++++--- MXM-1.3.9/MXM/man/testIndGEEReg.Rd | 15 -- MXM-1.3.9/MXM/man/testIndSPML.Rd |only MXM-1.3.9/MXM/man/univregs.Rd | 20 +- MXM-1.3.9/MXM/vignettes/FBED_KVerrou_2_5.Rmd | 2 MXM-1.3.9/MXM/vignettes/SES_KMVerrou_11_12.Rmd | 2 63 files changed, 991 insertions(+), 689 deletions(-)
Title: Project Future Case Incidence
Description: Provides functions and graphics for projecting daily incidence based on past incidence, and estimates of the serial interval and reproduction number. Projections are based on a branching process using a Poisson-distributed number of new cases per day, similar to the model used for estimating R0 in 'EpiEstim' or in 'earlyR', and described by Nouvellet et al. (2017) <doi:10.1016/j.epidem.2017.02.012>.
Author: Thibaut Jombart [aut, cre],
Pierre Nouvellet [aut],
Sangeeta Bhatia [ctb],
Zhian N. Kamvar [ctb]
Maintainer: Thibaut Jombart <thibautjombart@gmail.com>
Diff between projections versions 0.3.0 dated 2018-06-20 and 0.3.1 dated 2018-08-27
DESCRIPTION | 19 ++++++++++++------- MD5 | 20 ++++++++++---------- NAMESPACE | 2 +- NEWS.md | 4 ++++ R/accessors.R | 31 +++++++------------------------ R/internals.R | 11 ++++++++--- R/project.R | 2 ++ man/plot.projections.Rd | 10 +++++----- man/projections_accessors.Rd | 10 ++-------- man/subset.Rd | 3 ++- tests/testthat/test-project.R | 9 ++++++++- 11 files changed, 61 insertions(+), 60 deletions(-)
Title: Mapping ML Scores to Calibrated Predictions
Description: Transforms your uncalibrated Machine Learning scores to well-calibrated prediction estimates that can be interpreted as probability estimates. The implemented BBQ (Bayes Binning in Quantiles) model is taken from Naeini (2015, ISBN:0-262-51129-0).
Author: Johanna Schwarz
Maintainer: Dominik Heider <heiderd@mathematik.uni-marburg.de>
Diff between CalibratR versions 0.1.0 dated 2018-08-11 and 0.1.1 dated 2018-08-27
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: Various Programming Utilities
Description: Utility functions useful when programming and developing R packages.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between R.utils versions 2.6.0 dated 2017-11-05 and 2.7.0 dated 2018-08-27
R.utils-2.6.0/R.utils/man/inherits.Assert.Rd |only R.utils-2.6.0/R.utils/tests/arrayIndex.R |only R.utils-2.7.0/R.utils/DESCRIPTION | 9 R.utils-2.7.0/R.utils/MD5 | 382 +-- R.utils-2.7.0/R.utils/NAMESPACE | 3 R.utils-2.7.0/R.utils/NEWS | 28 R.utils-2.7.0/R.utils/R/006.fixVarArgs.R | 44 R.utils-2.7.0/R.utils/R/999.NonDocumentedObjects.R | 6 R.utils-2.7.0/R.utils/R/999.package.R | 2 R.utils-2.7.0/R.utils/R/Arguments.R | 573 +---- R.utils-2.7.0/R.utils/R/Assert.R | 466 ++-- R.utils-2.7.0/R.utils/R/CmdArgsFunction.R | 6 R.utils-2.7.0/R.utils/R/FileListTree.R | 86 R.utils-2.7.0/R.utils/R/FileProgressBar.R | 280 +- R.utils-2.7.0/R.utils/R/GString-class.R | 319 +- R.utils-2.7.0/R.utils/R/GenericSummary.R | 49 R.utils-2.7.0/R.utils/R/Java.R | 136 - R.utils-2.7.0/R.utils/R/LComments.R | 76 R.utils-2.7.0/R.utils/R/MultiVerbose.R | 27 R.utils-2.7.0/R.utils/R/NullVerbose.R | 44 R.utils-2.7.0/R.utils/R/Options.R | 1227 +++++------ R.utils-2.7.0/R.utils/R/ProgressBar.R | 936 ++++---- R.utils-2.7.0/R.utils/R/Settings.R | 136 - R.utils-2.7.0/R.utils/R/SmartComments.R | 136 - R.utils-2.7.0/R.utils/R/Sys.readlink2.R | 366 +-- R.utils-2.7.0/R.utils/R/System.R | 588 +---- R.utils-2.7.0/R.utils/R/TextStatusBar.R | 779 +++--- R.utils-2.7.0/R.utils/R/TimeoutException.R | 158 - R.utils-2.7.0/R.utils/R/VComments.R | 618 ++--- R.utils-2.7.0/R.utils/R/Verbose.R | 442 +-- R.utils-2.7.0/R.utils/R/addFinalizerToLast.R | 53 R.utils-2.7.0/R.utils/R/arrayIndex.R | 28 R.utils-2.7.0/R.utils/R/attachLocally.R | 202 - R.utils-2.7.0/R.utils/R/callHooks.R | 76 R.utils-2.7.0/R.utils/R/capitalize.R | 68 R.utils-2.7.0/R.utils/R/captureOutput.R | 223 -- R.utils-2.7.0/R.utils/R/cmdArgs.R | 423 +-- R.utils-2.7.0/R.utils/R/colClasses.R | 93 R.utils-2.7.0/R.utils/R/commandArgs.R | 1296 +++++------ R.utils-2.7.0/R.utils/R/compressFile.R | 112 - R.utils-2.7.0/R.utils/R/compressPDF.R | 7 R.utils-2.7.0/R.utils/R/copyDirectory.R | 44 R.utils-2.7.0/R.utils/R/copyFile.R | 94 R.utils-2.7.0/R.utils/R/countLines.R | 225 -- R.utils-2.7.0/R.utils/R/createFileAtomically.R | 261 +- R.utils-2.7.0/R.utils/R/createLink.R | 522 ++-- R.utils-2.7.0/R.utils/R/createWindowsShortcut.R | 339 +-- R.utils-2.7.0/R.utils/R/dataFrame.R | 20 R.utils-2.7.0/R.utils/R/density.EXTS.R | 87 R.utils-2.7.0/R.utils/R/detachPackage.R | 39 R.utils-2.7.0/R.utils/R/detachPlain.R | 33 R.utils-2.7.0/R.utils/R/dimNA.R | 173 - R.utils-2.7.0/R.utils/R/displayCode.R | 147 - R.utils-2.7.0/R.utils/R/doCall.R | 44 R.utils-2.7.0/R.utils/R/downloadFile.R | 188 - R.utils-2.7.0/R.utils/R/eget.R | 261 +- R.utils-2.7.0/R.utils/R/egsub.R | 32 R.utils-2.7.0/R.utils/R/env.R | 15 R.utils-2.7.0/R.utils/R/extract.array.R | 74 R.utils-2.7.0/R.utils/R/fileAccess.R | 143 - R.utils-2.7.0/R.utils/R/filePath.R | 812 +++---- R.utils-2.7.0/R.utils/R/finalizeSession.R | 10 R.utils-2.7.0/R.utils/R/findFiles.R | 143 - R.utils-2.7.0/R.utils/R/findSourceTraceback.R | 89 R.utils-2.7.0/R.utils/R/gcat.R | 51 R.utils-2.7.0/R.utils/R/getAbsolutePath.R | 90 R.utils-2.7.0/R.utils/R/getCommonPrefix.R | 39 R.utils-2.7.0/R.utils/R/getParent.R | 97 R.utils-2.7.0/R.utils/R/getPathIfEmpty.R | 23 R.utils-2.7.0/R.utils/R/getRelativePath.R | 108 R.utils-2.7.0/R.utils/R/gstring.R | 51 R.utils-2.7.0/R.utils/R/hasUrlProtocol.R | 11 R.utils-2.7.0/R.utils/R/hpaste.R | 187 - R.utils-2.7.0/R.utils/R/hsize.R | 6 R.utils-2.7.0/R.utils/R/inAnyInterval.R | 13 R.utils-2.7.0/R.utils/R/insert.R | 129 - R.utils-2.7.0/R.utils/R/installPackages.R | 80 R.utils-2.7.0/R.utils/R/intervalsToSeq.R | 33 R.utils-2.7.0/R.utils/R/isAbsolutePath.R | 37 R.utils-2.7.0/R.utils/R/isDirectory.R | 76 R.utils-2.7.0/R.utils/R/isEof.connection.R | 17 R.utils-2.7.0/R.utils/R/isFile.R | 43 R.utils-2.7.0/R.utils/R/isOpen.character.R | 46 R.utils-2.7.0/R.utils/R/isPackageInstalled.R | 17 R.utils-2.7.0/R.utils/R/isPackageLoaded.R | 20 R.utils-2.7.0/R.utils/R/isReplicated.R | 115 - R.utils-2.7.0/R.utils/R/isSingle.R | 85 R.utils-2.7.0/R.utils/R/isUrl.R | 9 R.utils-2.7.0/R.utils/R/isZero.R | 19 R.utils-2.7.0/R.utils/R/lastModified.R | 14 R.utils-2.7.0/R.utils/R/listDirectory.R | 52 R.utils-2.7.0/R.utils/R/loadObject.R | 16 R.utils-2.7.0/R.utils/R/loadToEnv.R | 12 R.utils-2.7.0/R.utils/R/mapToIntervals.R | 37 R.utils-2.7.0/R.utils/R/mergeByCommonTails.R | 23 R.utils-2.7.0/R.utils/R/mergeIntervals.R | 51 R.utils-2.7.0/R.utils/R/mkdirs.R | 24 R.utils-2.7.0/R.utils/R/mout.R | 13 R.utils-2.7.0/R.utils/R/moveInSearchPath.R | 79 R.utils-2.7.0/R.utils/R/mpager.R | 7 R.utils-2.7.0/R.utils/R/nullfile.R | 25 R.utils-2.7.0/R.utils/R/onGarbageCollect.R | 21 R.utils-2.7.0/R.utils/R/onSessionExit.R | 17 R.utils-2.7.0/R.utils/R/parseArgs.R | 123 - R.utils-2.7.0/R.utils/R/patchCode.R | 81 R.utils-2.7.0/R.utils/R/popBackupFile.R | 290 +- R.utils-2.7.0/R.utils/R/popTemporaryFile.R | 225 -- R.utils-2.7.0/R.utils/R/printf.R | 9 R.utils-2.7.0/R.utils/R/pushBackupFile.R | 255 +- R.utils-2.7.0/R.utils/R/pushTemporaryFile.R | 214 - R.utils-2.7.0/R.utils/R/queryRCmdCheck.R | 160 - R.utils-2.7.0/R.utils/R/readBinFragments.R | 127 - R.utils-2.7.0/R.utils/R/readRdHelp.R | 231 -- R.utils-2.7.0/R.utils/R/readTable.R | 244 -- R.utils-2.7.0/R.utils/R/readTableIndex.R | 21 R.utils-2.7.0/R.utils/R/readWindowsShellLink.R | 1895 ++++++++--------- R.utils-2.7.0/R.utils/R/readWindowsShortcut.R | 1234 +++++------ R.utils-2.7.0/R.utils/R/reassignInPackage.R | 53 R.utils-2.7.0/R.utils/R/removeDirectory.R | 49 R.utils-2.7.0/R.utils/R/renameFile.R | 63 R.utils-2.7.0/R.utils/R/resample.R | 11 R.utils-2.7.0/R.utils/R/resetWarnings.R | 11 R.utils-2.7.0/R.utils/R/saveObject.R | 15 R.utils-2.7.0/R.utils/R/seqToHumanReadable.R | 16 R.utils-2.7.0/R.utils/R/seqToIntervals.R | 69 R.utils-2.7.0/R.utils/R/setOption.R | 17 R.utils-2.7.0/R.utils/R/shell.exec2.R | 7 R.utils-2.7.0/R.utils/R/sourceDirectory.R | 129 - R.utils-2.7.0/R.utils/R/sourceTo.R | 112 - R.utils-2.7.0/R.utils/R/splitByCommonTails.R | 31 R.utils-2.7.0/R.utils/R/splitByPattern.R | 38 R.utils-2.7.0/R.utils/R/stext.R | 76 R.utils-2.7.0/R.utils/R/subplots.R | 36 R.utils-2.7.0/R.utils/R/systemR.R | 161 - R.utils-2.7.0/R.utils/R/tempvar.R | 135 - R.utils-2.7.0/R.utils/R/toAsciiRegExprPattern.R | 67 R.utils-2.7.0/R.utils/R/toCamelCase.R | 23 R.utils-2.7.0/R.utils/R/toUrl.R | 56 R.utils-2.7.0/R.utils/R/touchFile.R | 62 R.utils-2.7.0/R.utils/R/unwrap.array.R | 98 R.utils-2.7.0/R.utils/R/use.R | 388 +-- R.utils-2.7.0/R.utils/R/useRepos.R | 569 ++--- R.utils-2.7.0/R.utils/R/utils.R |only R.utils-2.7.0/R.utils/R/whichVector.R | 27 R.utils-2.7.0/R.utils/R/withCapture.R | 128 - R.utils-2.7.0/R.utils/R/withLocale.R | 7 R.utils-2.7.0/R.utils/R/withOptions.R | 166 - R.utils-2.7.0/R.utils/R/withRepos.R | 145 - R.utils-2.7.0/R.utils/R/withSeed.R | 2 R.utils-2.7.0/R.utils/R/withSink.R | 7 R.utils-2.7.0/R.utils/R/withTimeout.R | 323 +- R.utils-2.7.0/R.utils/R/wrap.array.R | 69 R.utils-2.7.0/R.utils/R/writeBinFragments.R | 83 R.utils-2.7.0/R.utils/R/writeDataFrame.R | 383 +-- R.utils-2.7.0/R.utils/R/zzz.R | 62 R.utils-2.7.0/R.utils/man/Assert.Rd | 9 R.utils-2.7.0/R.utils/man/GString-class.Rd | 4 R.utils-2.7.0/R.utils/man/R.utils-package.Rd | 2 R.utils-2.7.0/R.utils/man/Settings.Rd | 26 R.utils-2.7.0/R.utils/man/TimeoutException.Rd | 4 R.utils-2.7.0/R.utils/man/callHooks.Rd | 2 R.utils-2.7.0/R.utils/man/captureOutput.Rd | 2 R.utils-2.7.0/R.utils/man/compile.SmartComments.Rd | 2 R.utils-2.7.0/R.utils/man/compressFile.Rd | 2 R.utils-2.7.0/R.utils/man/copyFile.Rd | 2 R.utils-2.7.0/R.utils/man/countLines.Rd | 2 R.utils-2.7.0/R.utils/man/createFileAtomically.Rd | 2 R.utils-2.7.0/R.utils/man/dimNALT_-.Rd | 4 R.utils-2.7.0/R.utils/man/downloadFile.character.Rd | 1 R.utils-2.7.0/R.utils/man/filePath.Rd | 2 R.utils-2.7.0/R.utils/man/findFiles.Rd | 2 R.utils-2.7.0/R.utils/man/findGraphicsDevice.System.Rd | 10 R.utils-2.7.0/R.utils/man/gcat.Rd | 2 R.utils-2.7.0/R.utils/man/getLogicals.Arguments.Rd | 2 R.utils-2.7.0/R.utils/man/getNumerics.Arguments.Rd | 2 R.utils-2.7.0/R.utils/man/hpaste.Rd | 8 R.utils-2.7.0/R.utils/man/inheritsFrom.Assert.Rd |only R.utils-2.7.0/R.utils/man/isMatrix.Assert.Rd | 4 R.utils-2.7.0/R.utils/man/isScalar.Assert.Rd | 4 R.utils-2.7.0/R.utils/man/isVector.Assert.Rd | 4 R.utils-2.7.0/R.utils/man/isZero.Rd | 2 R.utils-2.7.0/R.utils/man/mkdirs.Rd | 4 R.utils-2.7.0/R.utils/man/moveInSearchPath.Rd | 2 R.utils-2.7.0/R.utils/man/nullfile.Rd | 17 R.utils-2.7.0/R.utils/man/onGarbageCollect.Rd | 2 R.utils-2.7.0/R.utils/man/onSessionExit.Rd | 2 R.utils-2.7.0/R.utils/man/readTable.Rd | 4 R.utils-2.7.0/R.utils/man/seqToIntervals.Rd | 4 R.utils-2.7.0/R.utils/man/sourceDirectory.Rd | 2 R.utils-2.7.0/R.utils/man/warnings.Verbose.Rd | 3 R.utils-2.7.0/R.utils/man/withSeed.Rd | 2 R.utils-2.7.0/R.utils/man/withTimeout.Rd | 4 R.utils-2.7.0/R.utils/man/wrap.array.Rd | 2 R.utils-2.7.0/R.utils/man/writeRaw.MultiVerbose.Rd | 2 194 files changed, 11225 insertions(+), 13825 deletions(-)
Title: Matching Algorithms for Causal Inference with Clustered Data
Description: Provides functions to perform matching algorithms for causal inference with clustered data, as described in B. Arpino and M. Cannas (2016) <doi:10.1002/sim.6880>. Pure within-cluster and preferential within-cluster matching are implemented. Both algorithms provide causal estimates with cluster-adjusted estimates of standard errors.
Author: Massimo Cannas [aut, cre],
Bruno Arpino [ctb],
Elena Colicino [ctb]
Maintainer: Massimo Cannas <massimo.cannas@unica.it>
Diff between CMatching versions 2.1 dated 2018-07-02 and 2.2 dated 2018-08-27
DESCRIPTION | 15 +++++++++------ MD5 | 8 ++++---- R/CMatch.R | 2 +- build/partial.rdb |binary man/CMatching-package.Rd | 4 ++-- 5 files changed, 16 insertions(+), 13 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-26 7.5
2016-12-14 5.2
2016-12-13 5.1
2016-04-20 5.0.1
2014-11-16 3.1
2014-10-22 3.0
2014-10-01 2.0.1
2014-09-29 2.0
2014-05-29 1.0
Title: Functions for Tabular Reporting
Description: Create pretty tables for 'Microsoft Word', 'Microsoft PowerPoint' and 'HTML' documents.
Functions are provided to let users create tables, modify and format their content.
It extends package 'officer' that does not contain any feature for customized tabular reporting
and can be used within R markdown documents when rendering to HTML and to 'Microsoft Word' documents.
Author: David Gohel [aut, cre],
Maxim Nazarov [ctb] (rmarkdown for docx output)
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between flextable versions 0.4.4 dated 2018-04-19 and 0.4.5 dated 2018-08-27
DESCRIPTION | 13 ++++----- MD5 | 52 +++++++++++++++++++------------------ NAMESPACE | 4 ++ NEWS | 11 +++++++ R/body_add_flextable.R | 56 +++++++++++++++++++++++++++++++++++++++- R/display.R | 1 R/empty.R | 1 R/flextable.R | 2 - R/flextable_sizes.R | 8 ++++- R/merge_flextable.R | 4 ++ R/r6_class.R | 19 +++++++------ R/regulartable.R | 19 +++++++------ R/set_headers.R | 10 +++++-- R/styles.R | 34 ++++++++++++++++++++++-- R/tabpart_format.R | 2 - R/themes.R | 5 +++ R/utils.R | 44 ++++++++++++++++++++----------- R/xtable_to_flextable.R | 33 ++++++++++++++++++++++- README.md | 17 ++++++++++++ build/vignette.rds |binary inst/doc/examples.html | 8 ++--- inst/doc/format.html | 6 ++-- inst/doc/overview.html | 2 - man/body_add_flextable.Rd | 2 - man/footers_flextable_at_bkm.Rd |only man/headers_flextable_at_bkm.Rd |only man/rotate.Rd | 8 +++++ man/set_formatter.Rd | 5 ++- 28 files changed, 279 insertions(+), 87 deletions(-)
Title: Automatic Differentiation of Multivariate Operations
Description: An object that supports automatic differentiation
of matrix- and multidimensional-valued functions with
respect to multidimensional independent variables.
Automatic differentiation is via 'forward accumulation'.
Author: Steven E. Pav [aut, cre] (<https://orcid.org/0000-0002-4197-6195>)
Maintainer: Steven E. Pav <shabbychef@gmail.com>
Diff between madness versions 0.2.3 dated 2018-02-15 and 0.2.4 dated 2018-08-27
madness-0.2.3/madness/inst/doc/introducing_madness.pdf.asis |only madness-0.2.3/madness/tests/run-all.R |only madness-0.2.3/madness/tools/figure/cosym_mo-1.png |only madness-0.2.3/madness/tools/figure/marksym_check-1.png |only madness-0.2.3/madness/tools/figure/matracer-1.png |only madness-0.2.3/madness/vignettes/introducing_madness.pdf.asis |only madness-0.2.4/madness/ChangeLog |only madness-0.2.4/madness/DESCRIPTION | 23 - madness-0.2.4/madness/MD5 | 47 +- madness-0.2.4/madness/R/AllClass.r | 1 madness-0.2.4/madness/R/Ops.r | 100 ++++ madness-0.2.4/madness/R/bind.r | 12 madness-0.2.4/madness/R/data.r |only madness-0.2.4/madness/R/madness_pkg.r | 10 madness-0.2.4/madness/R/reshape.r | 4 madness-0.2.4/madness/README.md | 121 ++---- madness-0.2.4/madness/build/vignette.rds |binary madness-0.2.4/madness/data |only madness-0.2.4/madness/inst/doc/introducing_madness.Rnw |only madness-0.2.4/madness/inst/doc/introducing_madness.pdf |binary madness-0.2.4/madness/man/NEWS.Rd | 11 madness-0.2.4/madness/man/figures |only madness-0.2.4/madness/man/madness-class.Rd | 1 madness-0.2.4/madness/man/madness-pkg.Rd | 1 madness-0.2.4/madness/man/stock_returns.Rd |only madness-0.2.4/madness/man/wff3.Rd |only madness-0.2.4/madness/tests/testthat.R |only madness-0.2.4/madness/tests/testthat/test-basic.r | 221 ++++++----- madness-0.2.4/madness/tests/testthat/test-correctness.r | 89 +--- madness-0.2.4/madness/vignettes/common.bib |only madness-0.2.4/madness/vignettes/introducing_madness.Rnw |only 31 files changed, 387 insertions(+), 254 deletions(-)
Title: Load US Census Boundary and Attribute Data as 'tidyverse' and
'sf'-Ready Data Frames
Description: An integrated R interface to the decennial US Census and American Community Survey APIs and
the US Census Bureau's geographic boundary files. Allows R users to return Census and ACS data as
tidyverse-ready data frames, and optionally returns a list-column with feature geometry for many
geographies.
Author: Kyle Walker [aut, cre],
Kris Eberwein [ctb]
Maintainer: Kyle Walker <kyle.walker@tcu.edu>
Diff between tidycensus versions 0.4.6 dated 2018-04-15 and 0.8.1 dated 2018-08-27
DESCRIPTION | 10 LICENSE | 4 MD5 | 60 +-- NAMESPACE | 70 +-- R/acs.R | 900 ++++++++++++++++++++++++----------------------- R/albers.R | 21 + R/census.R | 644 +++++++++++++++++---------------- R/estimates.R |only R/fips_codes.R | 110 ++--- R/helpers.R | 649 +++++++++++++++++----------------- R/load_data.R | 930 +++++++++++++++++++++++++++++++------------------ R/moe.R | 225 +++++------ R/search_variables.R | 246 +++++++----- R/tidycensus-package.R | 42 +- R/utils.R | 290 +++++++-------- R/validate_call.R | 40 +- R/zzz.r | 87 ++-- README.md | 244 ++++++------ data/datalist | 6 man/census_api_key.Rd | 82 ++-- man/county_laea.Rd | 44 +- man/fips_codes.Rd | 58 +-- man/get_acs.Rd | 218 +++++------ man/get_decennial.Rd | 182 ++++----- man/get_estimates.Rd |only man/load_variables.Rd | 60 +-- man/moe_product.Rd | 46 +- man/moe_prop.Rd | 46 +- man/moe_ratio.Rd | 46 +- man/moe_sum.Rd | 46 +- man/state_laea.Rd | 44 +- man/tidycensus.Rd | 26 - 32 files changed, 2929 insertions(+), 2547 deletions(-)
Title: Language Server Protocol
Description: An implementation of the Language Server Protocol for R. The Language Server protocol is used by an editor client to integrate features like auto completion. See <https://microsoft.github.io/language-server-protocol> for details.
Author: Randy Lai
Maintainer: Randy Lai <randy.cs.lai@gmail.com>
Diff between languageserver versions 0.2.3 dated 2018-06-16 and 0.2.4 dated 2018-08-27
DESCRIPTION | 14 ++--- MD5 | 28 +++++----- R/completion.R | 13 +++- R/diagnostics.R | 15 ++--- R/document.R | 18 ++++++ R/handlers-general.R | 18 ++++++ R/handlers-langfeatures.R | 2 R/handlers-textsync.R | 15 ++++- R/handlers-workspace.R | 2 R/hover.R | 2 R/signature.R | 2 R/utils.R | 9 +++ R/workspace.R | 120 +++++++++++++++++++++++++++++++++------------- README.md | 2 man/workspace_sync.Rd | 12 ++-- 15 files changed, 188 insertions(+), 84 deletions(-)
More information about languageserver at CRAN
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