Wed, 05 Sep 2018

New package vanquish with initial version 1.0.0
Package: vanquish
Title: Variant Quality Investigation Helper
Version: 1.0.0
Authors@R: c(person("Tao", "Jiang", role = c("aut", "cre"), email = "tjiang8@ncsu.edu"))
Description: Imports Variant Calling Format file into R. It can detect whether a sample contains contaminant from the same species. In the first stage of the approach, a change-point detection method is used to identify copy number variations for filtering. Next, features are extracted from the data for a support vector machine model. For log-likelihood calculation, the deviation parameter is estimated by maximum likelihood method. Using a radial basis function kernel support vector machine, the contamination of a sample can be detected.
Depends: R (>= 3.4.0)
Imports: changepoint, e1071, ggplot2, stats, VGAM
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2018-07-17 19:05:46 UTC; tjiang8
Author: Tao Jiang [aut, cre]
Maintainer: Tao Jiang <tjiang8@ncsu.edu>
Repository: CRAN
Date/Publication: 2018-09-05 14:50:04 UTC

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