Title: Hierarchical Item Response Theory Models
Description: Implementation of a class of hierarchical item response
theory (IRT) models where both the mean and the variance of latent preferences
(ability parameters) may depend on observed covariates. The current
implementation includes both the two-parameter latent trait model for binary data and the
graded response model for ordinal data. Both are fitted via the Expectation-Maximization (EM)
algorithm. Asymptotic standard errors are derived from the observed information
matrix.
Author: Xiang Zhou [aut, cre]
Maintainer: Xiang Zhou <xiang_zhou@fas.harvard.edu>
Diff between hIRT versions 0.1.2 dated 2017-08-01 and 0.1.3 dated 2018-09-16
DESCRIPTION | 10 +++++----- MD5 | 11 ++++++----- NEWS.md |only R/hgrm.R | 25 ++++++++++++------------- R/hltm.R | 11 +++++------ man/hgrm.Rd | 15 +++++++-------- man/hltm.Rd | 13 ++++++------- 7 files changed, 41 insertions(+), 44 deletions(-)
Title: Matrix Completion, Imputation, and Inpainting Methods
Description: Filling in the missing entries of a partially observed data is one of fundamental problems in various disciplines of mathematical science. For many cases, data at our interests have canonical form of matrix in that the problem is posed upon a matrix with missing values to fill in the entries under preset assumptions and models. We provide a collection of methods from multiple disciplines under Matrix Completion, Imputation, and Inpainting. See Davenport and Romberg (2016) <doi:10.1109/JSTSP.2016.2539100> for an overview of the topic.
Author: Kisung You [aut, cre] (<https://orcid.org/0000-0002-8584-459X>)
Maintainer: Kisung You <kyou@nd.edu>
Diff between filling versions 0.1.0 dated 2017-12-11 and 0.2.0 dated 2018-09-16
DESCRIPTION | 14 +++++++------- MD5 | 33 ++++++++++++++++++--------------- NAMESPACE | 2 ++ R/RcppExports.R | 8 ++++---- R/auxiliary_visible.R | 2 -- R/fill_USVT.R |only R/fill_nuclear.R | 3 ++- R/filling-package.R | 19 +++++++++++++++++++ R/zzz.R |only build/partial.rdb |binary inst/REFERENCES.bib | 16 +++++++++++++++- man/fill.USVT.Rd |only man/fill_HardImpute.Rd | 4 ++-- man/fill_SoftImpute.Rd | 3 ++- man/fill_nuclear.Rd | 3 ++- man/filling-package.Rd | 13 +++++++++++++ src/Makevars | 4 ++-- src/Makevars.win | 4 ++-- src/RcppExports.cpp | 26 +++++++++++++------------- 19 files changed, 103 insertions(+), 51 deletions(-)
Title: Bayesian Whole-Genome Regression
Description: Whole-genome regression methods on Bayesian framework fitted via EM
or Gibbs sampling, with optional sampling techniques and kernel term.
Author: Alencar Xavier, William Muir, Shizhong Xu, Katy Rainey.
Maintainer: Alencar Xavier <alenxav@gmail.com>
Diff between bWGR versions 1.5.4 dated 2018-08-08 and 1.5.5 dated 2018-09-16
bWGR-1.5.4/bWGR/src/wgr20180808.cpp |only bWGR-1.5.5/bWGR/DESCRIPTION | 8 +- bWGR-1.5.5/bWGR/MD5 | 22 +++--- bWGR-1.5.5/bWGR/R/RcppExports.R | 32 +++++++-- bWGR-1.5.5/bWGR/R/cv.R | 10 +-- bWGR-1.5.5/bWGR/R/mix.R | 8 +- bWGR-1.5.5/bWGR/README.md |only bWGR-1.5.5/bWGR/inst/doc |only bWGR-1.5.5/bWGR/man/bWGR.Rd | 4 - bWGR-1.5.5/bWGR/man/em.Rd | 3 bWGR-1.5.5/bWGR/man/mix.Rd | 5 + bWGR-1.5.5/bWGR/man/wgr.Rd | 16 +++- bWGR-1.5.5/bWGR/src/RcppExports.cpp | 118 +++++++++++++++++++++++++++++------- bWGR-1.5.5/bWGR/src/wgr20180916.cpp |only 14 files changed, 170 insertions(+), 56 deletions(-)
Title: Total Variation Regularization
Description: Provides tools for denoising noisy signal and images via
Total Variation Regularization. Reducing the total variation of
the given signal is known to remove spurious detail while preserving
essential structural details. For the seminal work on the topic,
see Rudin et al (1992) <doi:10.1016/0167-2789(92)90242-F>.
Author: Kisung You [aut, cre] (<https://orcid.org/0000-0002-8584-459X>)
Maintainer: Kisung You <kyou@nd.edu>
Diff between tvR versions 0.2.0 dated 2018-05-15 and 0.3.0 dated 2018-09-16
tvR-0.2.0/tvR/R/package-tvR.R |only tvR-0.2.0/tvR/src/rcpp_hello.cpp |only tvR-0.3.0/tvR/DESCRIPTION | 11 ++++++----- tvR-0.3.0/tvR/MD5 | 30 ++++++++++++++++-------------- tvR-0.3.0/tvR/NAMESPACE | 1 - tvR-0.3.0/tvR/R/RcppExports.R | 4 ---- tvR-0.3.0/tvR/R/denoise1.R | 1 - tvR-0.3.0/tvR/R/denoise2.R | 1 - tvR-0.3.0/tvR/R/lena128.R |only tvR-0.3.0/tvR/R/tvR-package.R |only tvR-0.3.0/tvR/build/partial.rdb |binary tvR-0.3.0/tvR/data |only tvR-0.3.0/tvR/man/denoise1.Rd | 1 - tvR-0.3.0/tvR/man/denoise2.Rd | 1 - tvR-0.3.0/tvR/man/lena128.Rd |only tvR-0.3.0/tvR/man/tvR-package.Rd | 2 +- tvR-0.3.0/tvR/src/Makevars | 2 +- tvR-0.3.0/tvR/src/Makevars.win | 4 ++-- tvR-0.3.0/tvR/src/RcppExports.cpp | 11 ----------- 19 files changed, 26 insertions(+), 43 deletions(-)
Title: Spatial and Spatiotemporal Relative Risk
Description: Provides functions to estimate kernel-smoothed spatial and spatio-temporal densities and relative risk functions, and perform subsequent inference. Methodological details can be found in the accompanying tutorial: Davies et al. (2018) <DOI:10.1002/sim.7577>.
Author: Tilman M. Davies [aut, cre],
Jonathan C. Marshall [aut]
Maintainer: Tilman M. Davies <tdavies@maths.otago.ac.nz>
Diff between sparr versions 2.2-12 dated 2018-07-22 and 2.2-13 dated 2018-09-16
DESCRIPTION | 10 ++++---- MD5 | 54 +++++++++++++++++++++++----------------------- NEWS | 19 ++++++++++++++++ R/LSCV.density.R | 2 - R/LSCV.risk.R | 2 - R/SLIK.adapt.R | 4 +-- R/bivariate.density.R | 2 - R/multiscale.density.R | 2 - R/multiscale.slice.R | 2 - R/package.R | 2 - R/plot.bivden.R | 2 + R/plot.rrst.R | 38 ++++++++++++++++++++++++++++++-- R/tolerance.R | 2 - man/BOOT.density.Rd | 2 - man/CV.Rd | 19 ++++++++-------- man/LSCV.risk.Rd | 8 +++--- man/NS.Rd | 5 +--- man/OS.Rd | 5 +--- man/SLIK.adapt.Rd | 4 +-- man/bivariate.density.Rd | 2 - man/multiscale.density.Rd | 2 - man/multiscale.slice.Rd | 2 - man/plotsparr.Rd | 21 +++++++++-------- man/printsparr.Rd | 4 --- man/risk.Rd | 4 +-- man/sparr-package.Rd | 6 ++--- man/summarysparr.Rd | 4 --- man/tolerance.Rd | 7 +++-- 28 files changed, 142 insertions(+), 94 deletions(-)
Title: Atmospheric Thermodynamics and Visualization
Description: Deals with many computations related to the thermodynamics of atmospheric processes. It includes many functions designed to consider the density of air with varying degrees of water vapour in it, saturation pressures and mixing ratios, conversion of moisture indices, computation of atmospheric states of parcels subject to dry or pseudoadiabatic vertical evolutions and atmospheric instability indices that are routinely used for operational weather forecasts or meteorological diagnostics.
Author: Jon Sáenz, Santos J. González-Rojí, Sheila Carreno-Madinabeitia and Gabriel Ibarra-Berastegi
Maintainer: Santos J. González-Rojí <santosjose.gonzalez@ehu.eus>
Diff between aiRthermo versions 1.2 dated 2018-07-02 and 1.2.1 dated 2018-09-16
DESCRIPTION | 8 MD5 | 22 +- NEWS.md | 6 R/CAPE_CIN.R | 384 +++++++++++++++++++++---------------------- R/aiRthermo-internal.R | 250 +++++++++++++-------------- R/stuve_diagram.R | 152 ++++++++++------- data/RadiosondeA.rda |binary data/RadiosondeD.rda |binary data/RadiosondeDavenport.rda |binary data/aiRthermoConstants.rda |binary data/fixedlines.rda |binary man/stuve_diagram.Rd | 17 + 12 files changed, 443 insertions(+), 396 deletions(-)
Title: United States House and Senate Voting Cartogram Generators
Description: 'ProPublica' <https://projects.propublica.org/represent/> makes United States
Congress member votes available and has developed their own unique cartogram to visually
represent this data. Tools are provided to retrieve voting data, prepare voting data
for plotting with 'ggplot2', create vote cartograms and theme them.
Author: Bob Rudis [aut, cre] (<https://orcid.org/0000-0001-5670-2640>),
ProPublica [cph] (Cartogram SVGs used to make the plot data.frames),
GovTrack [cph] (Cartogram SVG used to make the plot data.frame)
Maintainer: Bob Rudis <bob@rud.is>
Diff between voteogram versions 0.2.0 dated 2017-11-27 and 0.3.1 dated 2018-09-16
DESCRIPTION | 16 + MD5 | 12 - build/vignette.rds |binary inst/doc/intro_to_voteogram.R | 4 inst/doc/intro_to_voteogram.Rmd | 4 inst/doc/intro_to_voteogram.html | 316 ++++++++++++++++++++++++--------------- vignettes/intro_to_voteogram.Rmd | 4 7 files changed, 222 insertions(+), 134 deletions(-)
Title: A Collection of Graphon Estimation Methods
Description: Provides a not-so-comprehensive list of methods for estimating graphon,
a symmetric measurable function, from a single or multiple of observed networks.
For a detailed introduction on graphon and popular estimation techniques,
see the paper by Orbanz, P. and Roy, D.M.(2014) <doi:10.1109/TPAMI.2014.2334607>.
It also contains several auxiliary functions for generating sample networks
using various network models and graphons.
Author: Kisung You [aut, cre] (<https://orcid.org/0000-0002-8584-459X>)
Maintainer: Kisung You <kyou@nd.edu>
Diff between graphon versions 0.2.0 dated 2017-11-08 and 0.3.0 dated 2018-09-16
graphon-0.2.0/graphon/man/graphon.Rd |only graphon-0.3.0/graphon/DESCRIPTION | 15 ++++---- graphon-0.3.0/graphon/MD5 | 50 ++++++++++++++------------- graphon-0.3.0/graphon/NAMESPACE | 2 + graphon-0.3.0/graphon/R/cv.SBA.R | 18 ++++----- graphon-0.3.0/graphon/R/est.LG.R | 21 +++++------ graphon-0.3.0/graphon/R/est.SBA.R | 21 +++++------ graphon-0.3.0/graphon/R/est.USVT.R | 10 ++--- graphon-0.3.0/graphon/R/est.completion.R | 12 +++--- graphon-0.3.0/graphon/R/est.nbdsmooth.R | 10 +++-- graphon-0.3.0/graphon/R/gmodel.ER.R | 17 ++++----- graphon-0.3.0/graphon/R/gmodel.P.R | 8 ++-- graphon-0.3.0/graphon/R/gmodel.block.R | 12 +++--- graphon-0.3.0/graphon/R/gmodel.preset.R | 13 ++++--- graphon-0.3.0/graphon/R/graphon-package.R | 25 ++----------- graphon-0.3.0/graphon/build |only graphon-0.3.0/graphon/inst |only graphon-0.3.0/graphon/man/cv.SBA.Rd | 19 ++++------ graphon-0.3.0/graphon/man/est.LG.Rd | 21 ++++------- graphon-0.3.0/graphon/man/est.SBA.Rd | 20 ++++------ graphon-0.3.0/graphon/man/est.USVT.Rd | 9 ++-- graphon-0.3.0/graphon/man/est.completion.Rd | 11 +++-- graphon-0.3.0/graphon/man/est.nbdsmooth.Rd | 10 ++--- graphon-0.3.0/graphon/man/gmodel.ER.Rd | 14 +++---- graphon-0.3.0/graphon/man/gmodel.P.Rd | 6 +-- graphon-0.3.0/graphon/man/gmodel.block.Rd | 12 +++--- graphon-0.3.0/graphon/man/gmodel.preset.Rd | 10 ++--- graphon-0.3.0/graphon/man/graphon-package.Rd |only 28 files changed, 176 insertions(+), 190 deletions(-)
Title: Simulation of Study Data
Description: Simulates data sets in order to explore modeling techniques or
better understand data generating processes. The user specifies a set of
relationships between covariates, and generates data based on these
specifications. The final data sets can represent data from randomized
control trials, repeated measure (longitudinal) designs, and cluster
randomized trials. Missingness can be generated using various
mechanisms (MCAR, MAR, NMAR).
Author: Keith Goldfeld [aut, cre]
Maintainer: Keith Goldfeld <Keith.Goldfeld@nyumc.org>
Diff between simstudy versions 0.1.9 dated 2018-05-11 and 0.1.10 dated 2018-09-16
DESCRIPTION | 15 MD5 | 125 +++---- NAMESPACE | 3 NEWS.md | 9 R/addColumns.R | 4 R/addCondition.R | 6 R/addCorFlex.R | 12 R/addCorGen.R | 251 ++++++++++---- R/addPeriods.R | 2 R/betaGetShapes.R |only R/defData.R | 2 R/defRead.R | 2 R/genCorData.R | 45 -- R/genCorFlex.R | 2 R/genCorGen.R | 84 +++- R/genCorMat.R |only R/genCorOrdCat.R |only R/genData.R | 2 R/genMiss.R | 6 R/genOrdCat.R | 12 R/genSpline.R | 2 R/iccRE.R | 2 R/int_addStrataCode.R | 2 R/int_binEPmethod.R |only R/int_buildCorMatrix.R |only R/int_evalDef.R | 11 R/int_findPoisVar.R | 6 R/int_genMissDataMat.R | 6 R/int_genNegBinom.R | 4 R/int_genPosSkew.R | 4 R/int_genQuantU.R | 12 R/int_genUnifInt.R | 4 R/int_genbasisdt.R | 4 R/int_genbeta.R |only R/int_genbinom.R | 8 R/int_gencat.R | 6 R/int_gendeterm.R | 4 R/int_generate.R | 30 - R/int_genexp.R | 4 R/int_gengamma.R | 8 R/int_gennorm.R | 8 R/int_genpois.R | 8 R/int_genpoistrunc.R | 4 R/int_genunif.R | 4 R/int_isError.R | 4 R/int_loProb.R | 2 R/int_rmult.R | 2 R/trtAssign.R | 2 R/updateDef.R | 4 R/viewBasis.R | 2 R/viewSplines.R | 2 build/vignette.rds |binary inst/doc/simstudy.R | 183 ++++++++++ inst/doc/simstudy.Rmd | 274 ++++++++++++++- inst/doc/simstudy.html | 852 +++++++++++++++++++++++++++++-------------------- man/addCorData.Rd | 4 man/addCorGen.Rd | 39 +- man/betaGetShapes.Rd |only man/defData.Rd | 4 man/defDataAdd.Rd | 4 man/genCorGen.Rd | 16 man/genCorMat.Rd |only man/genCorOrdCat.Rd |only man/genFactor.Rd | 3 man/genMiss.Rd | 3 man/genMultiFac.Rd | 4 man/genOrdCat.Rd | 2 vignettes/simstudy.Rmd | 274 ++++++++++++++- 68 files changed, 1718 insertions(+), 685 deletions(-)
Title: Non-Negative Tensor Decomposition
Description: Some functions for performing non-negative matrix factorization, non-negative CANDECOMP/PARAFAC (CP) decomposition, non-negative Tucker decomposition, and generating toy model data. See Andrzej Cichock et al (2009) <doi:10.1002/9780470747278> and the reference section of GitHub README.md <https://github.com/rikenbit/nnTensor>, for details of the methods.
Author: Koki Tsuyuzaki, Manabu Ishii, Itoshi Nikaido
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
Diff between nnTensor versions 0.99.1 dated 2018-06-04 and 0.99.4 dated 2018-09-16
DESCRIPTION | 12 +++---- MD5 | 30 +++++++++--------- NAMESPACE | 2 - R/NMF.R | 53 +++++++++++++++++++------------- R/NTD.R | 61 ++++++++++++++++++++++--------------- R/NTF.R | 74 ++++++++++++++++++++++++++-------------------- R/toyModel.R | 45 +++++++++++++++------------ build/partial.rdb |binary inst/NEWS | 13 ++++++++ man/NMF.Rd | 2 + man/NTD.Rd | 2 + man/NTF.Rd | 2 + man/toyModel.Rd | 11 ++++-- tests/testthat/test_NMF.R | 50 ++++++++++++++----------------- tests/testthat/test_NTD.R | 22 ++++++------- tests/testthat/test_NTF.R | 50 ++++++++++++++++--------------- 16 files changed, 244 insertions(+), 185 deletions(-)
Title: Interactive Viewing of Spatial Data in R
Description: Quickly and conveniently create interactive
visualisations of spatial data with or without background maps.
Attributes of displayed features are fully queryable via pop-up
windows. Additional functionality includes methods to visualise true-
and false-color raster images, bounding boxes, small multiples and 3D
raster data cubes.
Author: Tim Appelhans [cre, aut],
Florian Detsch [aut],
Christoph Reudenbach [aut],
Stefan Woellauer [aut],
Spaska Forteva [ctb],
Thomas Nauss [ctb],
Edzer Pebesma [ctb],
Kenton Russell [ctb],
Michael Sumner [ctb],
Jochen Darley [ctb],
Pierre Roudier [ctb],
Patrick Schratz [ctb],
Environmental Informatics Marburg [ctb]
Maintainer: Tim Appelhans <tim.appelhans@gmail.com>
Diff between mapview versions 2.5.0 dated 2018-08-16 and 2.6.0 dated 2018-09-16
DESCRIPTION | 92 +++++++++++++----- MD5 | 36 +++---- NEWS | 14 ++ NEWS.md | 14 ++ R/extent.R | 1 R/leafletControls.R | 48 ++++++--- R/mapView.R | 167 +++++++++++++++++++--------------- R/mapshot.R | 25 +++-- R/mapviewControls.R | 16 ++- R/popup.R | 17 ++- R/raster.R | 8 + R/sf.R | 103 ++++++++++++-------- R/stars.R | 3 README.md | 1 data/breweries.rda |binary man/mapView.Rd | 36 ++++--- man/popup.Rd | 4 man/viewExtent.Rd | 1 tests/testthat/test-mapviewControls.R | 118 ++++++++++++++++++++++-- 19 files changed, 488 insertions(+), 216 deletions(-)
Title: The Knockoff Filter for Controlled Variable Selection
Description: The knockoff filter is a general procedure for controlling the false discovery rate (FDR)
when performing variable selection.
For more information, see the website below and the accompanying paper: Candes et al.,
"Panning for Gold: Model-X Knockoffs for High-dimensional Controlled Variable Selection",
2016, <arXiv:1610.02351>.
Author: Rina Foygel Barber [ctb] (Development of the original Fixed-X
Knockoffs),
Emmanuel Candes [ctb] (Development of Model-X Knockoffs and original
Fixed-X Knockoffs),
Lucas Janson [ctb] (Development of Model-X Knockoffs),
Evan Patterson [aut] (Original R package for the original Fixed-X
Knockoffs),
Matteo Sesia [aut, cre] (R package for Model-X Knockoffs)
Maintainer: Matteo Sesia <msesia@stanford.edu>
Diff between knockoff versions 0.3.0 dated 2017-10-17 and 0.3.2 dated 2018-09-16
knockoff-0.3.0/knockoff/man/divide_sdp.Rd |only knockoff-0.3.2/knockoff/DESCRIPTION | 34 ++--- knockoff-0.3.2/knockoff/MD5 | 55 ++++----- knockoff-0.3.2/knockoff/NEWS | 28 ++++ knockoff-0.3.2/knockoff/R/create_gaussian.R | 6 + knockoff-0.3.2/knockoff/R/knockoff_filter.R | 2 knockoff-0.3.2/knockoff/R/solve_asdp.R | 106 ++++++++++++++---- knockoff-0.3.2/knockoff/R/solve_sdp.R | 22 ++- knockoff-0.3.2/knockoff/R/stats_forward_selection.R | 19 ++- knockoff-0.3.2/knockoff/R/stats_glmnet.R | 30 ++++- knockoff-0.3.2/knockoff/R/stats_glmnet_cv.R | 15 ++ knockoff-0.3.2/knockoff/R/stats_random_forest.R | 14 ++ knockoff-0.3.2/knockoff/R/stats_sqrt_lasso.R | 16 ++ knockoff-0.3.2/knockoff/R/stats_stability_selection.R | 17 ++ knockoff-0.3.2/knockoff/R/util.R | 2 knockoff-0.3.2/knockoff/build/vignette.rds |binary knockoff-0.3.2/knockoff/inst/doc/advanced.html | 24 ++-- knockoff-0.3.2/knockoff/inst/doc/fixed.html | 16 +- knockoff-0.3.2/knockoff/inst/doc/hiv.html | 62 +++++----- knockoff-0.3.2/knockoff/inst/doc/knockoff.R | 26 ++-- knockoff-0.3.2/knockoff/inst/doc/knockoff.Rmd | 28 ++-- knockoff-0.3.2/knockoff/inst/doc/knockoff.html | 102 ++++++++--------- knockoff-0.3.2/knockoff/man/create.solve_asdp.Rd | 18 +-- knockoff-0.3.2/knockoff/man/create.solve_sdp.Rd | 4 knockoff-0.3.2/knockoff/man/divide.sdp.Rd |only knockoff-0.3.2/knockoff/man/merge.clusters.Rd |only knockoff-0.3.2/knockoff/tests/testthat/test_create.R | 1 knockoff-0.3.2/knockoff/tests/testthat/test_filter.R | 58 ++++----- knockoff-0.3.2/knockoff/tests/testthat/test_stats.R | 1 knockoff-0.3.2/knockoff/vignettes/knockoff.Rmd | 28 ++-- 30 files changed, 452 insertions(+), 282 deletions(-)
Title: Remote Sensing Field Work Tools
Description: In remote sensing, designing a field campaign to collect ground-truth data can be a challenging task. We need to collect representative samples while accounting for issues such as budget constraints and limited accessibility created by e.g. poor infrastructure. As suggested by Olofsson et al. (2014) <doi:10.1016/j.rse.2014.02.015>, this demands the establishment of best-practices to collect ground-truth data that avoid the waste of time and funds. 'fieldRS' addresses this issue by helping scientists and practitioners design field campaigns through the identification of priority sampling sites, the extraction of potential sampling plots and the conversion of plots into consistent training and validation samples that can be used in e.g. land cover classification.
Author: Ruben Remelgado [aut, cre]
Maintainer: Ruben Remelgado <ruben.remelgado@uni-wuerzburg.de>
Diff between fieldRS versions 0.1.0 dated 2018-08-02 and 0.1.1 dated 2018-09-16
fieldRS-0.1.0/fieldRS/R/erosionFilter.R |only fieldRS-0.1.0/fieldRS/man/erosionFilter.Rd |only fieldRS-0.1.1/fieldRS/DESCRIPTION | 16 ++--- fieldRS-0.1.1/fieldRS/MD5 | 33 +++++----- fieldRS-0.1.1/fieldRS/NAMESPACE | 6 + fieldRS-0.1.1/fieldRS/NEWS.md |only fieldRS-0.1.1/fieldRS/R/checkOverlap.R |only fieldRS-0.1.1/fieldRS/R/classModel.R | 24 +++---- fieldRS-0.1.1/fieldRS/R/labelCheck.R | 2 fieldRS-0.1.1/fieldRS/R/poly2sample.R |only fieldRS-0.1.1/fieldRS/R/rankPlots.R | 7 -- fieldRS-0.1.1/fieldRS/R/raster2sample.R | 11 +-- fieldRS-0.1.1/fieldRS/inst/doc/fieldRS.R | 3 fieldRS-0.1.1/fieldRS/inst/doc/fieldRS.Rmd | 3 fieldRS-0.1.1/fieldRS/inst/doc/fieldRS.html | 86 +++++++++++++--------------- fieldRS-0.1.1/fieldRS/man/checkOverlap.Rd |only fieldRS-0.1.1/fieldRS/man/classModel.Rd | 19 +++--- fieldRS-0.1.1/fieldRS/man/poly2sample.Rd |only fieldRS-0.1.1/fieldRS/man/rankPlots.Rd | 4 - fieldRS-0.1.1/fieldRS/man/raster2sample.Rd | 11 +-- fieldRS-0.1.1/fieldRS/vignettes/fieldRS.Rmd | 3 21 files changed, 112 insertions(+), 116 deletions(-)
Title: Dynamic Modeling in R
Description: Intensive longitudinal data have become increasingly prevalent in
various scientific disciplines. Many such data sets are noisy, multivariate,
and multi-subject in nature. The change functions may also be continuous, or
continuous but interspersed with periods of discontinuities (i.e., showing
regime switches). The package 'dynr' (Dynamic Modeling in R) is an R package
that implements a set of computationally efficient algorithms for handling a
broad class of linear and nonlinear discrete- and continuous-time models with
regime-switching properties under the constraint of linear Gaussian measurement
functions. The discrete-time models can generally take on the form of a state-
space or difference equation model. The continuous-time models are generally
expressed as a set of ordinary or stochastic differential equations. All
estimation and computations are performed in C, but users are provided with the
option to specify the model of interest via a set of simple and easy-to-learn
model specification functions in R. Model fitting can be performed using single-
subject time series data or multiple-subject longitudinal data.
Author: Lu Ou [aut],
Michael D. Hunter [aut, cre],
Sy-Miin Chow [aut]
Maintainer: Michael D. Hunter <mhunter.ou@gmail.com>
Diff between dynr versions 0.1.13-2 dated 2018-09-15 and 0.1.13-3 dated 2018-09-16
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS | 4 ++-- R/dynrVersion.R | 2 +- build/partial.rdb |binary inst/doc/InstallationForDevelopers.pdf |binary inst/doc/InstallationForUsers.pdf |binary inst/doc/LinearDiscreteTimeModels.pdf |binary inst/doc/NonlinearContinuousTimeModels.pdf |binary src/mainR.c | 16 +++++++++------- 10 files changed, 25 insertions(+), 23 deletions(-)
Title: Get Images Out of DICOM Format Quickly
Description: Provides tools to sort DICOM-format medical image files, and
convert them to NIfTI-1 format.
Author: Jon Clayden [aut, cre],
Chris Rorden [aut],
Martin J Fiedler [cph],
Cong Xu [cph],
Pascal Gloor [cph]
Maintainer: Jon Clayden <code@clayden.org>
Diff between divest versions 0.6.0 dated 2018-04-26 and 0.6.1 dated 2018-09-16
DESCRIPTION | 13 +-- MD5 | 36 ++++---- NEWS | 8 + README.md | 4 configure | 166 +++++++++++++++++++-------------------- configure.ac | 9 +- src/ImageList.h | 2 src/Makevars.in | 2 src/Makevars.win | 2 src/dcm2niix/nifti1_io_core.cpp | 6 - src/dcm2niix/nifti1_io_core.h | 4 src/dcm2niix/nii_dicom.cpp | 38 +++++++- src/dcm2niix/nii_dicom.h | 2 src/dcm2niix/nii_dicom_batch.cpp | 36 ++++---- src/dcm2niix/nii_dicom_batch.h | 6 - src/dcm2niix/nii_ortho.cpp | 2 src/dcm2niix/nii_ortho.h | 2 src/dcm2niix/print.h | 4 src/ujpeg/ujpeg.cpp | 2 19 files changed, 194 insertions(+), 150 deletions(-)
Title: Calculate Key DHS Indicators
Description: Calculates key indicators such as fertility rates (Total Fertility Rate (TFR), General Fertility Rate (GFR),
and Age Specific Fertility Rate (ASFR)) using Demographic and Health Survey (DHS) women/individual data,
and childhood mortality rates such as Neonatal Mortality Rate (NNMR), Post-neonatal Mortality Rate (PNNMR),
Infant Mortality Rate (IMR), Child Mortality Rate (CMR), and Under-five Mortality Rate (U5MR).
In addition to the indicators, the 'DHS.rates' package estimates sampling errors indicators such as Standard Error (SE),
Design Effect (DEFT), Relative Standard Error (RSE) and Confidence Interval (CI).
The package is developed according to the DHS methodology of calculating the fertility indicators and
the childhood mortality rates outlined in the
"Guide to DHS Statistics" (Croft, Trevor N., Aileen M. J. Marshall, Courtney K. Allen, et al. 2018, <https://dhsprogram.com/Data/Guide-to-DHS-Statistics/index.cfm>)
and the DHS methodology of estimating the sampling errors indicators outlined in
the "DHS Sampling and Household Listing Manual" (ICF International 2012, <https://dhsprogram.com/pubs/pdf/DHSM4/DHS6_Sampling_Manual_Sept2012_DHSM4.pdf>).
Author: Mahmoud Elkasabi
Maintainer: Mahmoud Elkasabi <mahmoud.elkasabi@icf.com>
Diff between DHS.rates versions 0.3.1 dated 2018-06-10 and 0.4.0 dated 2018-09-16
DHS.rates-0.3.1/DHS.rates/vignettes/rsconnect |only DHS.rates-0.4.0/DHS.rates/DESCRIPTION | 16 - DHS.rates-0.4.0/DHS.rates/MD5 | 19 - DHS.rates-0.4.0/DHS.rates/R/CHMORT5.R | 207 ++++++++++---- DHS.rates-0.4.0/DHS.rates/R/chmort.R | 307 +++++++++++----------- DHS.rates-0.4.0/DHS.rates/build/vignette.rds |binary DHS.rates-0.4.0/DHS.rates/data/ADBR70.rda |binary DHS.rates-0.4.0/DHS.rates/inst/doc/DHS.rates.Rmd | 8 DHS.rates-0.4.0/DHS.rates/inst/doc/DHS.rates.html | 42 +-- DHS.rates-0.4.0/DHS.rates/man/chmort.Rd | 4 DHS.rates-0.4.0/DHS.rates/vignettes/DHS.rates.Rmd | 8 11 files changed, 355 insertions(+), 256 deletions(-)
Title: Bayesian Regression Models using 'Stan'
Description: Fit Bayesian generalized (non-)linear multivariate multilevel models
using 'Stan' for full Bayesian inference. A wide range of distributions
and link functions are supported, allowing users to fit -- among others --
linear, robust linear, count data, survival, response times, ordinal,
zero-inflated, hurdle, and even self-defined mixture models all in a
multilevel context. Further modeling options include non-linear and
smooth terms, auto-correlation structures, censored data, meta-analytic
standard errors, and quite a few more. In addition, all parameters of the
response distribution can be predicted in order to perform distributional
regression. Prior specifications are flexible and explicitly encourage
users to apply prior distributions that actually reflect their beliefs.
Model fit can easily be assessed and compared with posterior predictive
checks and leave-one-out cross-validation. References: Bürkner (2017)
<doi:10.18637/jss.v080.i01>; Carpenter et al. (2017) <doi:10.18637/jss.v076.i01>.
Author: Paul-Christian Bürkner [aut, cre]
Maintainer: Paul-Christian Bürkner <paul.buerkner@gmail.com>
Diff between brms versions 2.4.0 dated 2018-07-20 and 2.5.0 dated 2018-09-16
DESCRIPTION | 10 - MD5 | 208 ++++++++++++++++----------------- NAMESPACE | 10 + NEWS.md |only R/brm.R | 32 ++--- R/brm_multiple.R | 21 +++ R/brmsfit-helpers.R | 65 ++++------ R/brmsfit-methods.R | 180 ++++++++++++++++------------ R/brmsformula.R | 33 +++-- R/data-helpers.R | 14 ++ R/data-predictor.R | 16 +- R/exclude_pars.R | 4 R/extract_draws.R | 10 + R/families.R | 191 ++++++++++++++++++------------ R/fitted.R | 91 ++++++++------ R/formula-helpers.R | 14 ++ R/generics.R | 9 + R/hypothesis.R | 39 ++++-- R/log_lik.R | 7 - R/loo-helpers.R | 167 +++++++++++++++++++------- R/make_stancode.R | 23 +-- R/marginal_effects-helpers.R | 131 ++++++++++++-------- R/marginal_smooths-helpers.R | 2 R/misc-methods.R | 7 - R/misc.R | 89 +++++++++++++- R/predict.R | 15 +- R/predictor.R | 115 ------------------ R/priors.R | 14 +- R/re-syntax-helpers.R | 5 R/rename_pars.R | 16 +- R/restructure.R | 9 + R/sp-syntax-helpers.R | 4 R/stan-predictor.R | 12 - R/stan-prior.R | 149 ++++++++++------------- R/sysdata.rda |binary R/validate.R | 30 +++- inst/doc/brms_customfamilies.R | 6 inst/doc/brms_customfamilies.Rmd | 6 inst/doc/brms_customfamilies.html | 44 +++--- inst/doc/brms_distreg.html | 90 +++++++------- inst/doc/brms_families.html | 4 inst/doc/brms_missings.html | 46 +++---- inst/doc/brms_monotonic.html | 114 +++++++++--------- inst/doc/brms_multilevel.pdf |binary inst/doc/brms_multivariate.html | 98 +++++++-------- inst/doc/brms_nonlinear.html | 72 +++++------ inst/doc/brms_overview.pdf |binary inst/doc/brms_phylogenetics.Rmd | 8 - inst/doc/brms_phylogenetics.html | 81 ++++++------ man/AsymLaplace.Rd | 8 - man/InvGaussian.Rd | 3 man/Shifted_Lognormal.Rd | 8 - man/SkewNormal.Rd | 15 +- man/StudentT.Rd | 3 man/VarCorr.brmsfit.Rd | 4 man/VonMises.Rd | 3 man/ZeroInflated.Rd | 6 man/add_ic.Rd | 6 man/brm.Rd | 36 +++-- man/brm_multiple.Rd | 28 +++- man/brmsfamily.Rd | 30 ++-- man/brmsformula-helpers.Rd | 14 +- man/brmsformula.Rd | 9 + man/brmshypothesis.Rd | 5 man/coef.brmsfit.Rd | 3 man/custom_family.Rd | 36 ++++- man/expose_functions.Rd | 4 man/fitted.brmsfit.Rd | 19 +-- man/fixef.brmsfit.Rd | 9 + man/hypothesis.Rd | 3 man/is.brmsfit_multiple.Rd |only man/kfold.Rd | 72 +++++++---- man/log_lik.brmsfit.Rd | 5 man/loo_predict.brmsfit.Rd | 9 - man/make_stancode.Rd | 13 +- man/make_standata.Rd | 17 +- man/marginal_effects.Rd | 25 ++- man/marginal_smooths.Rd | 7 - man/mixture.Rd | 2 man/ngrps.Rd | 1 man/parse_bf.Rd | 4 man/plot.brmsfit.Rd | 6 man/post_prob.brmsfit.Rd | 3 man/posterior_average.Rd | 6 man/posterior_interval.brmsfit.Rd | 3 man/posterior_samples.Rd | 8 - man/posterior_summary.Rd | 4 man/pp_average.Rd | 8 - man/pp_check.brmsfit.Rd | 4 man/pp_mixture.Rd | 6 man/predict.brmsfit.Rd | 11 - man/prior_samples.Rd | 1 man/ranef.brmsfit.Rd | 10 + man/reloo.Rd | 4 man/residuals.brmsfit.Rd | 10 - man/stancode.Rd | 1 man/standata.Rd | 1 man/update.brmsfit.Rd | 4 man/vcov.brmsfit.Rd | 12 + tests/testthat/tests.brmsfit-methods.R | 26 ++-- tests/testthat/tests.families.R | 8 - tests/testthat/tests.make_stancode.R | 79 +++++------- tests/testthat/tests.make_standata.R | 21 ++- tests/testthat/tests.restructure.R | 4 vignettes/brms_customfamilies.Rmd | 6 vignettes/brms_phylogenetics.Rmd | 8 - 106 files changed, 1687 insertions(+), 1285 deletions(-)
Title: Compute the Rectangular Statistical Cartogram
Description: Provides an interface and a C++ implementation of the RecMap MP2
construction heuristic (see 'citation("recmap")' for details). This algorithm
draws maps according to a given statistical value (e.g., election results,
population or epidemiological data). The basic idea of the RecMap algorithm is
that each map region (e.g., different countries) is represented by a
rectangle. The area of each rectangle represents the statistical value given
as input (maintain zero cartographic error). Documentation about RecMap is
provided by a vignette included in this package.
Author: Christian Panse [aut, cre] (<https://orcid.org/0000-0003-1975-3064>)
Maintainer: Christian Panse <Christian.Panse@gmail.com>
Diff between recmap versions 0.5.37 dated 2018-08-28 and 1.0.0 dated 2018-09-16
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- README.md | 15 +++++++++++---- build/partial.rdb |binary inst/NEWS.Rd | 6 ++++-- inst/doc/recmap.R | 4 ++-- inst/doc/recmap.Rmd | 6 +++--- inst/doc/recmap.html | 18 +++++++++--------- man/jss2711.Rd | 14 ++++++++------ man/recmap.Rd | 7 +++---- vignettes/recmap.Rmd | 6 +++--- vignettes/recmap.bib | 4 ++-- 12 files changed, 59 insertions(+), 49 deletions(-)
Title: Reproducible Reports in Psychology
Description: Helper functions for producing reports in Psychology (Reproducible Research). Provides required formatted strings (APA style) for use in 'Sweave'/'Knitr' 'Latex' integration within *.Rnw files.
Author: Ian G Mackenzie
Maintainer: Ian G Mackenzie <ian.mackenzie@uni-tuebingen.de>
Diff between psychReport versions 0.1 dated 2018-08-11 and 0.2 dated 2018-09-16
DESCRIPTION | 6 +-- MD5 | 30 +++++++-------- R/aovEffectSize.R | 13 +++--- R/aovJackknifeAdjustment.R | 1 R/aovTable.R | 6 +-- R/mathString.R | 21 +++++----- R/numValueString.R | 6 +-- R/printAovMeans.R | 70 ++++++++++++++++++++++++++++++------ R/printTable.R | 16 ++++++-- man/aovEffectSize.Rd | 2 - man/mathString.Rd | 11 ++--- man/numValueString.Rd | 2 - man/printAovMeans.Rd | 2 - man/psychReport-package.Rd | 2 - tests/testthat/test-aovEffectSize.R | 34 +++++++---------- tests/testthat/test-mathString.R | 10 ++--- 16 files changed, 143 insertions(+), 89 deletions(-)
Title: Additional Functions for 'GeoPAT' 2
Description: Supports analysis of spatial data processed with the 'GeoPAT' 2
software <http://sil.uc.edu/cms/index.php?id=geopat2>.
Available features include creation of a grid based on the 'GeoPAT' 2
grid header file and reading a 'GeoPAT' 2 text outputs.
Author: Jakub Nowosad [aut, cre] (<https://orcid.org/0000-0002-1057-3721>),
Space Informatics Lab [cph]
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between rgeopat2 versions 0.2.5 dated 2018-06-15 and 0.2.6 dated 2018-09-16
DESCRIPTION | 16 ++++++++-------- MD5 | 18 +++++++++--------- R/gpat_create_grid.R | 23 ++++++++++++----------- R/gpat_read_distmtx.R | 6 +++--- R/gpat_read_txt.R | 8 ++++---- man/gpat_create_grid.Rd | 4 ++-- man/gpat_header_parser.Rd | 6 +++--- man/gpat_read_distmtx.Rd | 6 +++--- man/gpat_read_txt.Rd | 8 ++++---- man/gpat_st_make_grid.Rd | 2 +- 10 files changed, 49 insertions(+), 48 deletions(-)
Title: US Maps Including Alaska and Hawaii
Description: Obtain United States map data frames of varying region types (e.g. county,
state). The map data frames include Alaska and Hawaii conveniently placed to the
bottom left, as they appear in most maps of the US. Convenience functions for plotting
choropleths and working with FIPS codes are also provided.
Author: Paolo Di Lorenzo [aut, cre]
Maintainer: Paolo Di Lorenzo <paolo@dilorenzo.pl>
Diff between usmap versions 0.3.0 dated 2018-06-03 and 0.4.0 dated 2018-09-16
DESCRIPTION | 8 - MD5 | 62 ++++++--- NAMESPACE | 14 ++ NEWS.md | 19 ++ R/fips.R | 26 ++-- R/join-data.R | 29 ++-- R/plot-map.R | 48 ++++++- R/regions.R |only R/usmap.R | 9 - README.md | 136 +++++++++++++++++---- build/vignette.rds |binary inst/doc/introduction.html | 4 inst/doc/mapping.R | 11 + inst/doc/mapping.Rmd | 11 + inst/doc/mapping.html | 31 ++-- inst/extdata/county_fips.csv | 2 inst/extdata/us_counties.csv | 226 +++++++++++++++++------------------ inst/extdata/us_states_centroids.csv |only man/dot-east_north_central.Rd |only man/dot-east_south_central.Rd |only man/dot-mid_atlantic.Rd |only man/dot-midwest_region.Rd |only man/dot-mountain.Rd |only man/dot-new_england.Rd |only man/dot-north_central_region.Rd |only man/dot-northeast_region.Rd |only man/dot-pacific.Rd |only man/dot-south_atlantic.Rd |only man/dot-south_region.Rd |only man/dot-west_north_central.Rd |only man/dot-west_region.Rd |only man/dot-west_south_central.Rd |only man/fips.Rd | 2 man/map_with_data.Rd | 3 man/plot_usmap.Rd | 20 ++- man/us_map.Rd | 6 man/usmap.Rd | 1 tests/testthat/test-fips.R | 23 ++- tests/testthat/test-plot.R | 95 ++++++-------- vignettes/mapping.Rmd | 11 + 40 files changed, 514 insertions(+), 283 deletions(-)
Title: Prepare Reproducible Example Code via the Clipboard
Description: Convenience wrapper that uses the 'rmarkdown' package to render
small snippets of code to target formats that include both code and output.
The goal is to encourage the sharing of small, reproducible, and runnable
examples on code-oriented websites, such as <https://stackoverflow.com> and
<https://github.com>, or in email. The user's clipboard is the default source
of input code and the default target for rendered output. 'reprex' also
extracts clean, runnable R code from various common formats, such as
copy/paste from an R session.
Author: Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>),
Jim Hester [aut] (<https://orcid.org/0000-0002-2739-7082>),
David Robinson [aut],
Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>),
RStudio [cph, fnd]
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between reprex versions 0.2.0 dated 2018-06-22 and 0.2.1 dated 2018-09-16
reprex-0.2.0/reprex/R/zzz.R |only reprex-0.2.1/reprex/DESCRIPTION | 14 reprex-0.2.1/reprex/MD5 | 66 +- reprex-0.2.1/reprex/NAMESPACE | 1 reprex-0.2.1/reprex/NEWS.md | 12 reprex-0.2.1/reprex/R/ensure.R | 38 + reprex-0.2.1/reprex/R/filepaths.R | 106 +-- reprex-0.2.1/reprex/R/optionally.R | 2 reprex-0.2.1/reprex/R/reprex-addin.R | 11 reprex-0.2.1/reprex/R/reprex-undo.R | 103 ++- reprex-0.2.1/reprex/R/reprex.R | 270 +++++----- reprex-0.2.1/reprex/R/utils.R | 72 +- reprex-0.2.1/reprex/R/whisker.R | 87 ++- reprex-0.2.1/reprex/README.md | 9 reprex-0.2.1/reprex/build/vignette.rds |binary reprex-0.2.1/reprex/inst/doc/reprex-dos-and-donts.Rmd | 2 reprex-0.2.1/reprex/inst/doc/reprex-dos-and-donts.html | 4 reprex-0.2.1/reprex/inst/templates/REPREX.R | 10 reprex-0.2.1/reprex/man/reprex.Rd | 84 +-- reprex-0.2.1/reprex/man/reprex_addin.Rd | 11 reprex-0.2.1/reprex/man/un-reprex.Rd | 23 reprex-0.2.1/reprex/tests/testthat/helper.R | 5 reprex-0.2.1/reprex/tests/testthat/test-filepaths.R |only reprex-0.2.1/reprex/tests/testthat/test-input.R | 42 - reprex-0.2.1/reprex/tests/testthat/test-knitr-options.R | 37 - reprex-0.2.1/reprex/tests/testthat/test-outfiles.R | 69 +- reprex-0.2.1/reprex/tests/testthat/test-pandoc.R | 4 reprex-0.2.1/reprex/tests/testthat/test-reprex.R | 8 reprex-0.2.1/reprex/tests/testthat/test-stdout-stderr.R | 8 reprex-0.2.1/reprex/tests/testthat/test-undo.R | 26 reprex-0.2.1/reprex/tests/testthat/test-utils.R | 7 reprex-0.2.1/reprex/vignettes/articles/anotherdark-andale-60-line-numbers.png |only reprex-0.2.1/reprex/vignettes/articles/bizarro-selective-reveal.png |only reprex-0.2.1/reprex/vignettes/articles/dusk-fira-35-line-numbers.png |only reprex-0.2.1/reprex/vignettes/articles/eval-false.png |only reprex-0.2.1/reprex/vignettes/articles/keynote-w00t.png |only reprex-0.2.1/reprex/vignettes/articles/rtf.Rmd |only reprex-0.2.1/reprex/vignettes/reprex-dos-and-donts.Rmd | 2 38 files changed, 636 insertions(+), 497 deletions(-)
Title: Fast Generators and Iterators for Permutations, Combinations and
Partitions
Description: Fast generators and iterators for permutations, combinations
and partitions. The iterators allow users to generate arrangements in
a memory efficient manner and the generated arrangements are in
lexicographical (dictionary) order. Permutations and combinations can
be drawn with/without replacement and support multisets. It has been
demonstrated that 'arrangements' outperforms most of the existing
packages of similar kind. Some benchmarks could be found at
<https://randy3k.github.io/arrangements/articles/benchmark.html>.
Author: Randy Lai [aut, cre]
Maintainer: Randy Lai <randy.cs.lai@gmail.com>
Diff between arrangements versions 1.1.2 dated 2018-08-24 and 1.1.3 dated 2018-09-16
arrangements-1.1.2/arrangements/src/partitions/partitions.h |only arrangements-1.1.3/arrangements/DESCRIPTION | 8 arrangements-1.1.3/arrangements/MD5 | 63 - arrangements-1.1.3/arrangements/R/combinations.R | 11 arrangements-1.1.3/arrangements/R/partitions.R | 21 arrangements-1.1.3/arrangements/R/permutations.R | 11 arrangements-1.1.3/arrangements/man/icombinations.Rd | 4 arrangements-1.1.3/arrangements/man/ipartitions.Rd | 4 arrangements-1.1.3/arrangements/man/ipermutations.Rd | 4 arrangements-1.1.3/arrangements/man/partitions.Rd | 14 arrangements-1.1.3/arrangements/src/combinations.c | 9 arrangements-1.1.3/arrangements/src/combinations/multiset_combinations.h | 56 - arrangements-1.1.3/arrangements/src/combinations/ordinary_combinations.h | 56 - arrangements-1.1.3/arrangements/src/combinations/replacement_combinations.h | 56 - arrangements-1.1.3/arrangements/src/partitions.c | 97 +- arrangements-1.1.3/arrangements/src/partitions/k_partitions.h | 449 ++++++++-- arrangements-1.1.3/arrangements/src/partitions/ordinary_partitions.h |only arrangements-1.1.3/arrangements/src/partitions/partitions_utils.h |only arrangements-1.1.3/arrangements/src/permutations.c | 15 arrangements-1.1.3/arrangements/src/permutations/k_permutations.h | 80 - arrangements-1.1.3/arrangements/src/permutations/multiset_permutations.h | 58 - arrangements-1.1.3/arrangements/src/permutations/ordinary_permutations.h | 73 - arrangements-1.1.3/arrangements/src/permutations/replacement_permutations.h | 56 - arrangements-1.1.3/arrangements/src/utils.c | 44 arrangements-1.1.3/arrangements/src/utils.h | 2 arrangements-1.1.3/arrangements/tests/testthat/test_combinations.R | 21 arrangements-1.1.3/arrangements/tests/testthat/test_k_partitions.R | 44 arrangements-1.1.3/arrangements/tests/testthat/test_k_permutations.R | 21 arrangements-1.1.3/arrangements/tests/testthat/test_multiset_combinations.R | 7 arrangements-1.1.3/arrangements/tests/testthat/test_multiset_permutations.R | 7 arrangements-1.1.3/arrangements/tests/testthat/test_partitions.R | 41 arrangements-1.1.3/arrangements/tests/testthat/test_permutations.R | 2 arrangements-1.1.3/arrangements/tests/testthat/test_replace_combinations.R | 7 arrangements-1.1.3/arrangements/tests/testthat/test_replace_permutations.R | 7 34 files changed, 911 insertions(+), 437 deletions(-)