Title: Nonparametric Variable Importance
Description: Calculate point estimates of and valid confidence intervals for
nonparametric variable importance measures in high and low dimensions,
using flexible estimators of the underlying regression functions. For more information
about the methods, please see Williamson et al. (2017) <https://biostats.bepress.com/uwbiostat/paper422/>.
Author: Brian D. Williamson [aut, cre],
Noah Simon [aut],
Marco Carone [aut]
Maintainer: Brian D. Williamson <brianw26@uw.edu>
Diff between vimp versions 1.1.0 dated 2018-08-09 and 1.1.2 dated 2018-09-20
DESCRIPTION | 6 - MD5 | 19 ++- NAMESPACE | 2 R/cv_vim.R | 126 ++++++++++++--------- R/cv_vim_nodonsker.R |only R/two_validation_set_cv.R |only R/vimp_regression.R | 4 inst/doc/introduction_to_vimp.html | 20 +-- man/cv_vim.Rd | 63 +++++++--- man/cv_vim_nodonsker.Rd |only man/two_validation_set_cv.Rd |only man/vimp_regression.Rd | 4 tests/testthat/test_cv_nodonsker_vimp_regression.R |only 13 files changed, 152 insertions(+), 92 deletions(-)
Title: Client for the CORE API
Description: Client for the CORE API (<https://core.ac.uk/docs/>).
CORE (<https://core.ac.uk>) aggregates open access research
outputs from repositories and journals worldwide and make them
available to the public.
Author: Scott Chamberlain [aut, cre],
Aristotelis Charalampous [ctb],
Simon Goring [ctb]
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>
Diff between rcoreoa versions 0.1.0 dated 2017-06-20 and 0.3.0 dated 2018-09-20
DESCRIPTION | 14 LICENSE | 2 MD5 | 59 +-- NAMESPACE | 3 NEWS.md | 19 + R/advanced_search_helper_functions.R | 27 + R/caching.R |only R/core_advanced_search.R | 48 +- R/core_articles.R | 9 R/core_articles_history.R | 30 + R/core_articles_pdf.R | 64 ++- R/core_articles_search.R |only R/core_journals.R | 4 R/on_load.R |only R/rcoreoa-package.R | 22 - R/zzz.R | 39 +- README.md | 77 ++-- build/vignette.rds |binary inst/doc/cored_vignette.Rmd | 2 inst/doc/cored_vignette.html | 466 ++++++++++++++++++++--------- man/core_advanced_search.Rd | 19 - man/core_articles.Rd | 40 +- man/core_articles_history.Rd | 34 +- man/core_articles_pdf.Rd | 56 ++- man/core_articles_search.Rd |only man/core_cache.Rd |only man/core_journals.Rd | 17 - man/core_repos.Rd | 13 man/core_repos_search.Rd | 17 - man/core_search.Rd | 16 man/rcoreoa-package.Rd | 7 tests/testthat/test-core_advanced_search.R | 27 + vignettes/cored_vignette.Rmd | 2 33 files changed, 779 insertions(+), 354 deletions(-)
Title: Stereological Unfolding for Spheroidal Particles
Description: Stereological unfolding of the joint size-shape-orientation distribution of spheroidal shaped particles.
Author: Markus Baaske [aut, cre],
Felix Ballani [ctb]
Maintainer: Markus Baaske <markus.baaske@uni-jena.de>
Diff between unfoldr versions 0.6.8.1 dated 2018-09-01 and 0.6.9 dated 2018-09-20
DESCRIPTION | 8 +- MD5 | 14 +-- NEWS | 5 + src/Makevars | 11 +- src/SimPoisson.cpp | 197 +++++++++++++++++++++-------------------------------- src/SimPoisson.h | 42 ----------- src/Utils.cpp | 10 +- src/Utils.h | 9 -- 8 files changed, 113 insertions(+), 183 deletions(-)
Title: Simulation of Fatigue Lifetimes
Description: Provides methods for simulation and analysis of a very general fatigue
lifetime model for (metal matrix) composite materials.
Author: Markus Baaske [aut, cre],
Felix Ballani [aut, ctb]
Maintainer: Markus Baaske <markus.baaske@uni-jena.de>
Diff between simLife versions 0.3 dated 2016-10-07 and 0.5 dated 2018-09-20
simLife-0.3/simLife/inst/examples/fibersys.R |only simLife-0.3/simLife/inst/examples/simFiberDefect.R |only simLife-0.3/simLife/man/simCluster.Rd |only simLife-0.3/simLife/man/simFerrit.Rd |only simLife-0.3/simLife/man/simParticle.Rd |only simLife-0.3/simLife/src/sim2Life.cpp |only simLife-0.3/simLife/src/sim2Life.h |only simLife-0.5/simLife/DESCRIPTION | 23 - simLife-0.5/simLife/MD5 | 112 ++--- simLife-0.5/simLife/NAMESPACE | 74 ++- simLife-0.5/simLife/NEWS |only simLife-0.5/simLife/R/densify.R | 201 +++++---- simLife-0.5/simLife/R/rsaSpheroids.r | 79 ++- simLife-0.5/simLife/R/simLife-package.R | 14 simLife-0.5/simLife/R/simLife.R | 174 +++----- simLife-0.5/simLife/R/times.R | 69 +-- simLife-0.5/simLife/data/AL2MC_15p_k10_F2p_CL.rda |binary simLife-0.5/simLife/data/AL2MC_15p_k10_F2p_S.rda |binary simLife-0.5/simLife/data/AL2MC_20p_k10_F2p_CL.rda |binary simLife-0.5/simLife/data/AL2MC_20p_k10_F2p_S.rda |binary simLife-0.5/simLife/inst/examples/cylinder.R | 46 +- simLife-0.5/simLife/inst/examples/densify.R | 53 +- simLife-0.5/simLife/inst/examples/fiber.R | 27 - simLife-0.5/simLife/inst/examples/sim.R | 18 simLife-0.5/simLife/inst/examples/simFailure.R | 62 ++ simLife-0.5/simLife/inst/examples/sphere.R | 60 +- simLife-0.5/simLife/inst/examples/woehler.R | 38 - simLife-0.5/simLife/man/CL.Rd | 1 simLife-0.5/simLife/man/CLF.Rd | 1 simLife-0.5/simLife/man/S.Rd | 6 simLife-0.5/simLife/man/SF.Rd | 4 simLife-0.5/simLife/man/areaCrit.Rd | 4 simLife-0.5/simLife/man/densifyCluster.Rd | 69 +-- simLife-0.5/simLife/man/drawDefectProjections.Rd | 16 simLife-0.5/simLife/man/drawProjection.Rd | 4 simLife-0.5/simLife/man/extractClusters.Rd | 4 simLife-0.5/simLife/man/getCrackTime.Rd | 9 simLife-0.5/simLife/man/getCylinderProjection.Rd | 54 +- simLife-0.5/simLife/man/getDelamTime.Rd | 5 simLife-0.5/simLife/man/getSphereProjection.Rd | 4 simLife-0.5/simLife/man/getSpheroidProjection.Rd | 4 simLife-0.5/simLife/man/plotDefectAcc.Rd | 4 simLife-0.5/simLife/man/rsa.Rd | 23 - simLife-0.5/simLife/man/showDensity.Rd | 17 simLife-0.5/simLife/man/simCLuster.Rd |only simLife-0.5/simLife/man/simCrackTime.Rd | 22 - simLife-0.5/simLife/man/simDefect.Rd | 3 simLife-0.5/simLife/man/simFracture.Rd | 103 ++-- simLife-0.5/simLife/man/simLife-package.Rd | 11 simLife-0.5/simLife/man/simTimes.Rd | 17 simLife-0.5/simLife/man/woehler.Rd | 68 +-- simLife-0.5/simLife/man/woehlerDiagram.Rd | 3 simLife-0.5/simLife/src/GeometricPrimitives.cpp | 84 ++- simLife-0.5/simLife/src/GeometricPrimitives.h | 451 ++++++++++++++------- simLife-0.5/simLife/src/Makevars | 13 simLife-0.5/simLife/src/Vector.h | 82 +-- simLife-0.5/simLife/src/cluster.cpp | 35 - simLife-0.5/simLife/src/cluster.h | 1 simLife-0.5/simLife/src/convert.cpp | 416 ++++++------------- simLife-0.5/simLife/src/simLife.cpp |only simLife-0.5/simLife/src/simLife.h |only simLife-0.5/simLife/tests |only 62 files changed, 1384 insertions(+), 1204 deletions(-)
Title: Matrix Reconstruction from a Few Entries
Description: Matrix reconstruction, also known as matrix completion, is
the task of inferring missing entries of a partially observed matrix.
This package provides a method called OptSpace,
which was proposed by Keshavan, R.H., Oh, S., and Montanari, A. (2009)
<doi:10.1109/ISIT.2009.5205567> for a case under low-rank assumption.
Author: Kisung You [aut, cre] (<https://orcid.org/0000-0002-8584-459X>)
Maintainer: Kisung You <kyou@nd.edu>
Diff between ROptSpace versions 0.1.2 dated 2017-12-04 and 0.2.0 dated 2018-09-20
DESCRIPTION | 16 ++++++++-------- MD5 | 11 ++++++----- NAMESPACE | 2 ++ R/OptSpace.R | 4 ++-- R/zzz.R |only build/partial.rdb |binary man/OptSpace.Rd | 6 ++---- 7 files changed, 20 insertions(+), 19 deletions(-)
Title: Add some 'AdminLTE2' Components to 'shinydashboard'
Description: Extend 'shinydashboard' with 'AdminLTE2' components.
'AdminLTE2' is a free 'Bootstrap 3' dashboard template available
at <https://adminlte.io>.
Customize boxes, add timelines and a lot more.
Author: David Granjon [aut, cre],
Almasaeed Studio [ctb, cph] (AdminLTE2 theme for Bootstrap 3),
Winston Chang [ctb, cph] (Functions from shinydashboard),
Petr Tichy [ctb, cph] (CSS preloader),
Victor Perrier [ctb] (improved the shinydashboardPlusGallery)
Maintainer: David Granjon <dgranjon@ymail.com>
Diff between shinydashboardPlus versions 0.5.0 dated 2018-07-05 and 0.6.0 dated 2018-09-20
shinydashboardPlus-0.5.0/shinydashboardPlus/inst/img/landscape.png |only shinydashboardPlus-0.5.0/shinydashboardPlus/inst/img/landscape2.jpg |only shinydashboardPlus-0.5.0/shinydashboardPlus/inst/img/landscape3.png |only shinydashboardPlus-0.5.0/shinydashboardPlus/vignettes/figures/landscape.png |only shinydashboardPlus-0.5.0/shinydashboardPlus/vignettes/figures/landscape2.jpg |only shinydashboardPlus-0.5.0/shinydashboardPlus/vignettes/figures/landscape3.png |only shinydashboardPlus-0.5.0/shinydashboardPlus/vignettes/figures/shadow.mp4 |only shinydashboardPlus-0.6.0/shinydashboardPlus/DESCRIPTION | 10 shinydashboardPlus-0.6.0/shinydashboardPlus/MD5 | 121 +- shinydashboardPlus-0.6.0/shinydashboardPlus/NAMESPACE | 6 shinydashboardPlus-0.6.0/shinydashboardPlus/NEWS.md | 34 shinydashboardPlus-0.6.0/shinydashboardPlus/R/buttons.R | 8 shinydashboardPlus-0.6.0/shinydashboardPlus/R/dashboardHeaderPlus.R | 470 +++----- shinydashboardPlus-0.6.0/shinydashboardPlus/R/dashboardLabel.R | 12 shinydashboardPlus-0.6.0/shinydashboardPlus/R/dashboardPagePlus.R | 28 shinydashboardPlus-0.6.0/shinydashboardPlus/R/enhanced-boxes.R | 559 +++++++++- shinydashboardPlus-0.6.0/shinydashboardPlus/R/preloader.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/R/setPulse.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/R/setShake.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/R/setZoom.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/R/timeline.R | 10 shinydashboardPlus-0.6.0/shinydashboardPlus/R/user-post.R | 9 shinydashboardPlus-0.6.0/shinydashboardPlus/README.md | 5 shinydashboardPlus-0.6.0/shinydashboardPlus/build/vignette.rds |binary shinydashboardPlus-0.6.0/shinydashboardPlus/inst/doc/box-elements.Rmd | 5 shinydashboardPlus-0.6.0/shinydashboardPlus/inst/doc/box-elements.html | 9 shinydashboardPlus-0.6.0/shinydashboardPlus/inst/doc/boxPlus-sidebar.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/inst/doc/boxPlus-sidebar.Rmd |only shinydashboardPlus-0.6.0/shinydashboardPlus/inst/doc/boxPlus-sidebar.html |only shinydashboardPlus-0.6.0/shinydashboardPlus/inst/doc/css-preloader.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/inst/doc/css-preloader.Rmd |only shinydashboardPlus-0.6.0/shinydashboardPlus/inst/doc/css-preloader.html |only shinydashboardPlus-0.6.0/shinydashboardPlus/inst/doc/extra-css-effects.Rmd | 273 ++++ shinydashboardPlus-0.6.0/shinydashboardPlus/inst/doc/extra-css-effects.html | 264 ++++ shinydashboardPlus-0.6.0/shinydashboardPlus/inst/doc/improved-boxes.Rmd | 196 +++ shinydashboardPlus-0.6.0/shinydashboardPlus/inst/doc/improved-boxes.html | 195 +++ shinydashboardPlus-0.6.0/shinydashboardPlus/inst/doc/left-menu-navbar.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/inst/doc/left-menu-navbar.Rmd |only shinydashboardPlus-0.6.0/shinydashboardPlus/inst/doc/left-menu-navbar.html |only shinydashboardPlus-0.6.0/shinydashboardPlus/inst/doc/rightSidebar.Rmd | 6 shinydashboardPlus-0.6.0/shinydashboardPlus/inst/doc/rightSidebar.html | 8 shinydashboardPlus-0.6.0/shinydashboardPlus/inst/examples/app.R | 477 ++++++++ shinydashboardPlus-0.6.0/shinydashboardPlus/inst/img/boxPad.png |binary shinydashboardPlus-0.6.0/shinydashboardPlus/inst/img/socialBox.png |binary shinydashboardPlus-0.6.0/shinydashboardPlus/inst/img/widgetUserBox.png |binary shinydashboardPlus-0.6.0/shinydashboardPlus/man/appButton.Rd | 6 shinydashboardPlus-0.6.0/shinydashboardPlus/man/boxPlus.Rd | 52 shinydashboardPlus-0.6.0/shinydashboardPlus/man/dashboardHeaderPlus.Rd | 142 +- shinydashboardPlus-0.6.0/shinydashboardPlus/man/dashboardLabel.Rd | 8 shinydashboardPlus-0.6.0/shinydashboardPlus/man/dashboardPagePlus.Rd | 14 shinydashboardPlus-0.6.0/shinydashboardPlus/man/descriptionBlock.Rd | 6 shinydashboardPlus-0.6.0/shinydashboardPlus/man/dropdownBlock.Rd |only shinydashboardPlus-0.6.0/shinydashboardPlus/man/figures |only shinydashboardPlus-0.6.0/shinydashboardPlus/man/flipBox.Rd |only shinydashboardPlus-0.6.0/shinydashboardPlus/man/preloader.Rd |only shinydashboardPlus-0.6.0/shinydashboardPlus/man/productListItem.Rd | 4 shinydashboardPlus-0.6.0/shinydashboardPlus/man/setPulse.Rd |only shinydashboardPlus-0.6.0/shinydashboardPlus/man/setShake.Rd |only shinydashboardPlus-0.6.0/shinydashboardPlus/man/setZoom.Rd |only shinydashboardPlus-0.6.0/shinydashboardPlus/man/socialBox.Rd | 26 shinydashboardPlus-0.6.0/shinydashboardPlus/man/socialButton.Rd | 2 shinydashboardPlus-0.6.0/shinydashboardPlus/man/timelineItem.Rd | 4 shinydashboardPlus-0.6.0/shinydashboardPlus/man/userPost.Rd | 6 shinydashboardPlus-0.6.0/shinydashboardPlus/man/widgetUserBox.Rd | 7 shinydashboardPlus-0.6.0/shinydashboardPlus/vignettes/box-elements.Rmd | 5 shinydashboardPlus-0.6.0/shinydashboardPlus/vignettes/boxPlus-sidebar.Rmd |only shinydashboardPlus-0.6.0/shinydashboardPlus/vignettes/css-preloader.Rmd |only shinydashboardPlus-0.6.0/shinydashboardPlus/vignettes/extra-css-effects.Rmd | 273 ++++ shinydashboardPlus-0.6.0/shinydashboardPlus/vignettes/figures/boxPad.png |binary shinydashboardPlus-0.6.0/shinydashboardPlus/vignettes/figures/boxPlus-sidebar.mp4 |only shinydashboardPlus-0.6.0/shinydashboardPlus/vignettes/figures/flipBox.png |only shinydashboardPlus-0.6.0/shinydashboardPlus/vignettes/figures/navbar-left-menu.mp4 |only shinydashboardPlus-0.6.0/shinydashboardPlus/vignettes/figures/preloader.mp4 |only shinydashboardPlus-0.6.0/shinydashboardPlus/vignettes/figures/right-sidebar.mp4 |only shinydashboardPlus-0.6.0/shinydashboardPlus/vignettes/figures/socialBox.png |binary shinydashboardPlus-0.6.0/shinydashboardPlus/vignettes/figures/widgetUserBox.png |binary shinydashboardPlus-0.6.0/shinydashboardPlus/vignettes/improved-boxes.Rmd | 196 +++ shinydashboardPlus-0.6.0/shinydashboardPlus/vignettes/left-menu-navbar.Rmd |only shinydashboardPlus-0.6.0/shinydashboardPlus/vignettes/rightSidebar.Rmd | 6 79 files changed, 2931 insertions(+), 531 deletions(-)
More information about shinydashboardPlus at CRAN
Permanent link
Title: Relational Query Generator for Data Manipulation at Scale
Description: A piped query generator based on Edgar F. Codd's relational
algebra, and on production experience using 'SQL' and 'dplyr' at big data
scale. The design represents an attempt to make 'SQL' more teachable by
denoting composition by a sequential pipeline notation instead of nested
queries or functions. The implementation delivers reliable high
performance data processing on large data systems such as 'Spark',
databases, and 'data.table'. Package features include: data processing trees
or pipelines as observable objects (able to report both columns
produced and columns used), optimized 'SQL' generation as an explicit
user visible modeling step, explicit query reasoning and checking.
Author: John Mount [aut, cre],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between rquery versions 1.0.0 dated 2018-09-10 and 1.1.0 dated 2018-09-20
DESCRIPTION | 10 ++--- MD5 | 72 +++++++++++++++++++------------------ NAMESPACE | 1 NEWS.md | 6 +++ R/affine_transform.R | 1 R/assign_slice.R | 1 R/drop_columns.R | 3 + R/ex_data_frame.R | 1 R/extend.R | 6 +++ R/if_else_block.R | 1 R/lookup_by_column.R |only R/materialize.R | 1 R/natural_join.R | 6 ++- R/non_sql_node.R | 43 ++++++++++------------ R/normalize.R | 1 R/null_replace.R | 6 ++- R/order_by.R | 6 ++- R/ordered_select_rows.R | 1 R/project.R | 6 +++ R/quantile.R | 1 R/rename.R | 5 ++ R/rsummary.R | 3 + R/select_columns.R | 5 ++ R/select_rows.R | 6 +++ R/set_indicator.R | 6 ++- R/sql_node.R | 6 ++- R/table_source.R | 4 ++ R/theta_join.R | 6 +++ R/tokenize_for_sql.R | 1 R/union_all.R | 1 README.md | 14 +++---- inst/doc/AssigmentPartitioner.html | 4 +- inst/doc/PipeableSQL.html | 4 +- inst/doc/QueryGeneration.html | 4 +- inst/doc/rquery_intro.html | 4 +- man/lookup_by_column.Rd |only man/non_sql_node.Rd | 13 +++--- man/rsummary.Rd | 3 + 38 files changed, 168 insertions(+), 94 deletions(-)
Title: Robust Rank-Based Tests
Description: Implements two-sample tests for paired data with missing values (Fong, Huang, Lemos and McElrath 2018, Biostatics, <doi:10.1093/biostatistics/kxx039>) and modified Wilcoxon-Mann-Whitney two sample location test, also known as the Fligner-Policello test.
Author: Youyi Fong <youyifong@gmail.com>
Maintainer: Youyi Fong <youyifong@gmail.com>
Diff between robustrank versions 2017.12-2 dated 2017-12-03 and 2018.10-1 dated 2018-09-20
robustrank-2017.12-2/robustrank/R/randomCPY.R |only robustrank-2018.10-1/robustrank/ChangeLog | 9 robustrank-2018.10-1/robustrank/DESCRIPTION | 8 robustrank-2018.10-1/robustrank/MD5 | 49 +- robustrank-2018.10-1/robustrank/NAMESPACE | 3 robustrank-2018.10-1/robustrank/R/choose.test.R |only robustrank-2018.10-1/robustrank/R/mod.wmw.test.R | 6 robustrank-2018.10-1/robustrank/R/multinom.R | 6 robustrank-2018.10-1/robustrank/R/mw.mw.2.perm.R |only robustrank-2018.10-1/robustrank/R/pair.wmw.R | 36 + robustrank-2018.10-1/robustrank/R/pm.wilcox.test.R | 211 +++++----- robustrank-2018.10-1/robustrank/R/wmw.paired.replicates.R | 6 robustrank-2018.10-1/robustrank/inst/unitTests/runRUnitTests.R | 208 ++++----- robustrank-2018.10-1/robustrank/inst/unitTests/runit.mod.wmw.test.R | 65 +-- robustrank-2018.10-1/robustrank/inst/unitTests/runit.mw.mw.2.perm.R |only robustrank-2018.10-1/robustrank/inst/unitTests/runit.pair.wmw.R | 24 - robustrank-2018.10-1/robustrank/inst/unitTests/runit.paired.with.replicates.R | 2 robustrank-2018.10-1/robustrank/inst/unitTests/runit.partiallymatched.R | 30 - robustrank-2018.10-1/robustrank/man/choose.test.Rd |only robustrank-2018.10-1/robustrank/man/mod.wmw.test.Rd | 19 robustrank-2018.10-1/robustrank/man/multinom.test.Rd | 12 robustrank-2018.10-1/robustrank/man/mw.mw.2.perm.Rd |only robustrank-2018.10-1/robustrank/man/pair.wmw.test.Rd | 18 robustrank-2018.10-1/robustrank/man/pm.wilcox.test.Rd | 16 robustrank-2018.10-1/robustrank/man/sim.partially.matched.Rd | 7 robustrank-2018.10-1/robustrank/man/wmw.paired.replicates.test.Rd | 13 robustrank-2018.10-1/robustrank/src/mw_mw_2_perm.c |only robustrank-2018.10-1/robustrank/src/pair_wmw_test.c | 39 + robustrank-2018.10-1/robustrank/tests/doRUnit.R | 18 29 files changed, 454 insertions(+), 351 deletions(-)
Title: Tools for Eurostat Open Data
Description: Tools to download data from the Eurostat database
<http://ec.europa.eu/eurostat> together with search and
manipulation utilities.
Author: Leo Lahti [aut, cre],
Janne Huovari [aut],
Markus Kainu [aut],
Przemyslaw Biecek [aut],
Joona Lehtomaki [ctb],
Francois Briatte [ctb],
Oliver Reiter [ctb]
Maintainer: Leo Lahti <leo.lahti@iki.fi>
Diff between eurostat versions 3.2.2 dated 2018-07-22 and 3.2.9 dated 2018-09-20
eurostat-3.2.2/eurostat/R/eurostat_url.R |only eurostat-3.2.2/eurostat/data/eurostat_geodata_60_2013.rda |only eurostat-3.2.2/eurostat/man/eurostat_geodata_60_2013.Rd |only eurostat-3.2.2/eurostat/man/eurostat_url.Rd |only eurostat-3.2.2/eurostat/vignettes/2017_RJournal_manuscript |only eurostat-3.2.2/eurostat/vignettes/cheatsheet |only eurostat-3.2.2/eurostat/vignettes/fig/maps1-1-1.pdf |only eurostat-3.2.2/eurostat/vignettes/fig/maps1-1-1.png |only eurostat-3.2.2/eurostat/vignettes/fig/maps3-1.pdf |only eurostat-3.2.9/eurostat/DESCRIPTION | 10 eurostat-3.2.9/eurostat/MD5 | 74 eurostat-3.2.9/eurostat/R/data_spatial.R | 25 eurostat-3.2.9/eurostat/R/get_eurostat.R | 3 eurostat-3.2.9/eurostat/R/get_eurostat_dic.R | 2 eurostat-3.2.9/eurostat/R/get_eurostat_geospatial.R | 28 eurostat-3.2.9/eurostat/R/get_eurostat_raw.R | 2 eurostat-3.2.9/eurostat/R/set_eurostat_toc.R | 2 eurostat-3.2.9/eurostat/R/zzz.R |only eurostat-3.2.9/eurostat/README.md | 2 eurostat-3.2.9/eurostat/data/datalist |only eurostat-3.2.9/eurostat/data/eurostat_geodata_60_2016.rda |only eurostat-3.2.9/eurostat/inst/doc/blogposts.html | 4 eurostat-3.2.9/eurostat/inst/doc/cheatsheet.Rmd | 2 eurostat-3.2.9/eurostat/inst/doc/cheatsheet.html | 6 eurostat-3.2.9/eurostat/inst/doc/eurostat_tutorial.R | 18 eurostat-3.2.9/eurostat/inst/doc/eurostat_tutorial.Rmd | 20 eurostat-3.2.9/eurostat/inst/doc/eurostat_tutorial.pdf | 1694 +++++------ eurostat-3.2.9/eurostat/inst/doc/publications.Rmd | 5 eurostat-3.2.9/eurostat/inst/doc/publications.html | 6 eurostat-3.2.9/eurostat/man/eurostat_geodata_60_2016.Rd |only eurostat-3.2.9/eurostat/man/get_eurostat.Rd | 12 eurostat-3.2.9/eurostat/man/get_eurostat_geospatial.Rd | 6 eurostat-3.2.9/eurostat/man/get_eurostat_json.Rd | 6 eurostat-3.2.9/eurostat/vignettes/cheatsheet.Rmd | 2 eurostat-3.2.9/eurostat/vignettes/eurostat_tutorial.Rmd | 20 eurostat-3.2.9/eurostat/vignettes/eurostat_tutorial.html | 1919 ------------ eurostat-3.2.9/eurostat/vignettes/eurostat_tutorial.md | 1937 ------------- eurostat-3.2.9/eurostat/vignettes/fig/map1ex-1.pdf |binary eurostat-3.2.9/eurostat/vignettes/fig/maps2-1.pdf |binary eurostat-3.2.9/eurostat/vignettes/fig/maps4-1.png |binary eurostat-3.2.9/eurostat/vignettes/fig/plotGallery-1.pdf |binary eurostat-3.2.9/eurostat/vignettes/fig/trains_plot-1.pdf |binary eurostat-3.2.9/eurostat/vignettes/publications.Rmd | 5 43 files changed, 1138 insertions(+), 4672 deletions(-)
Title: A 'Bootstrap 4' Version of 'shinydashboard'
Description: Make 'Bootstrap 4' dashboards. Use the full power
of 'AdminLTE3', a dashboard template built on top of 'Bootstrap 4'
<https://github.com/almasaeed2010/AdminLTE/tree/v3-dev>.
Author: David Granjon [aut, cre],
Almasaeed Studio [ctb, cph] (AdminLTE3 theme for Bootstrap 4),
Winston Chang [ctb, cph] (Utils functions from shinydashboard),
Thomas Park [ctb, cph] (Bootswatch Sketchy theme CSS)
Maintainer: David Granjon <dgranjon@ymail.com>
Diff between bs4Dash versions 0.1.0 dated 2018-07-05 and 0.2.0 dated 2018-09-20
bs4Dash-0.1.0/bs4Dash/inst/css |only bs4Dash-0.1.0/bs4Dash/inst/examples/showcase/app.R |only bs4Dash-0.1.0/bs4Dash/inst/js |only bs4Dash-0.1.0/bs4Dash/man/figures/bs4Boxes_example.png |only bs4Dash-0.1.0/bs4Dash/man/figures/bs4Dash_showcase.png |only bs4Dash-0.1.0/bs4Dash/man/figures/old_school.png |only bs4Dash-0.2.0/bs4Dash/DESCRIPTION | 10 - bs4Dash-0.2.0/bs4Dash/MD5 | 84 ++++++------- bs4Dash-0.2.0/bs4Dash/NAMESPACE | 1 bs4Dash-0.2.0/bs4Dash/NEWS.md | 17 ++ bs4Dash-0.2.0/bs4Dash/R/bs4DashGallery.R | 12 + bs4Dash-0.2.0/bs4Dash/R/cards.R | 23 +-- bs4Dash-0.2.0/bs4Dash/R/dashboardNavbar.R | 13 +- bs4Dash-0.2.0/bs4Dash/R/dashboardPage.R | 50 +++----- bs4Dash-0.2.0/bs4Dash/R/deps.R |only bs4Dash-0.2.0/bs4Dash/R/useful-items.R | 46 +++++++ bs4Dash-0.2.0/bs4Dash/README.md | 99 ++++++++++++++-- bs4Dash-0.2.0/bs4Dash/build/vignette.rds |binary bs4Dash-0.2.0/bs4Dash/inst/AdminLTE3-3.0.0 |only bs4Dash-0.2.0/bs4Dash/inst/bootstrap-4.1.0 |only bs4Dash-0.2.0/bs4Dash/inst/bs4Dash-0.2.0 |only bs4Dash-0.2.0/bs4Dash/inst/doc/bs4Intro.Rmd | 2 bs4Dash-0.2.0/bs4Dash/inst/doc/bs4Intro.html | 4 bs4Dash-0.2.0/bs4Dash/inst/doc/bs4Showcase.Rmd | 11 - bs4Dash-0.2.0/bs4Dash/inst/doc/bs4Showcase.html | 10 - bs4Dash-0.2.0/bs4Dash/inst/doc/bs4Themes.Rmd | 12 + bs4Dash-0.2.0/bs4Dash/inst/doc/bs4Themes.html | 8 - bs4Dash-0.2.0/bs4Dash/inst/examples/showcase/classic |only bs4Dash-0.2.0/bs4Dash/inst/examples/showcase/old_school |only bs4Dash-0.2.0/bs4Dash/man/bs4Callout.Rd | 4 bs4Dash-0.2.0/bs4Dash/man/bs4Card.Rd | 9 - bs4Dash-0.2.0/bs4Dash/man/bs4DashGallery.Rd | 5 bs4Dash-0.2.0/bs4Dash/man/bs4DashNavbar.Rd | 4 bs4Dash-0.2.0/bs4Dash/man/bs4DashPage.Rd | 5 bs4Dash-0.2.0/bs4Dash/man/bs4InfoBox.Rd | 1 bs4Dash-0.2.0/bs4Dash/man/bs4Jumbotron.Rd | 5 bs4Dash-0.2.0/bs4Dash/man/bs4ListGroupItem.Rd | 6 bs4Dash-0.2.0/bs4Dash/man/bs4TabCard.Rd | 1 bs4Dash-0.2.0/bs4Dash/man/bs4UserCard.Rd | 4 bs4Dash-0.2.0/bs4Dash/man/bs4ValueBox.Rd | 5 bs4Dash-0.2.0/bs4Dash/man/figures/bs4DashClassic.png |only bs4Dash-0.2.0/bs4Dash/man/figures/bs4DashOldSchool.png |only bs4Dash-0.2.0/bs4Dash/man/ionicon.Rd |only bs4Dash-0.2.0/bs4Dash/vignettes/bs4Intro.Rmd | 2 bs4Dash-0.2.0/bs4Dash/vignettes/bs4Showcase.Rmd | 11 - bs4Dash-0.2.0/bs4Dash/vignettes/bs4Themes.Rmd | 12 + bs4Dash-0.2.0/bs4Dash/vignettes/figures |only 47 files changed, 320 insertions(+), 156 deletions(-)
Title: 'rquery' for 'data.table'
Description: Implements the 'rquery' piped Codd-style query algebra using 'data.table'. This allows
for a high-speed in memory implementation of Codd-style data manipulation tools.
Author: John Mount [aut, cre],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between rqdatatable versions 1.0.0 dated 2018-09-10 and 1.1.1 dated 2018-09-20
DESCRIPTION | 12 +++++----- MD5 | 44 ++++++++++++++++++++-------------------- NAMESPACE | 1 NEWS.md | 5 ++++ R/execute_parallel.R | 1 R/make_dt_lookup_by_column.R |only R/relop_drop_columns.R | 1 R/relop_natural_join.R | 1 R/relop_non_sql.R | 28 ++++++++++++++++++++----- R/relop_null_replace.R | 1 R/relop_orderby.R | 4 +-- R/relop_project.R | 1 R/relop_rename_columns.R | 4 +-- R/relop_select_columns.R | 1 R/relop_select_rows.R | 1 R/relop_set_indicator.R | 1 R/relop_sql.R | 1 R/relop_table_source.R | 1 R/relop_theta_join.R | 1 R/relop_unionall.R | 1 R/rquery_fns.R | 4 +++ inst/doc/GroupedSampling.html | 4 +-- inst/doc/logisticexample.html | 4 +-- man/make_dt_lookup_by_column.Rd |only 24 files changed, 81 insertions(+), 41 deletions(-)
Title: Immunoglobulin Somatic Hypermutation Analysis
Description: Provides a computational framework for analyzing mutations in
immunoglobulin (Ig) sequences. Includes methods for Bayesian estimation of
antigen-driven selection pressure, mutational load quantification, building of
somatic hypermutation (SHM) models, and model-dependent distance calculations.
Also includes empirically derived models of SHM for both mice and humans.
Citations:
Gupta and Vander Heiden, et al (2015) <doi:10.1093/bioinformatics/btv359>,
Yaari, et al (2012) <doi:10.1093/nar/gks457>,
Yaari, et al (2013) <doi:10.3389/fimmu.2013.00358>,
Cui, et al (2016) <doi:10.4049/jimmunol.1502263>.
Author: Mohamed Uduman [aut],
Gur Yaari [aut],
Namita Gupta [aut],
Jason Vander Heiden [aut, cre],
Ang Cui [ctb],
Susanna Marquez [ctb],
Julian Zhou [ctb],
Nima Nouri [ctb],
Steven Kleinstein [aut, cph]
Maintainer: Jason Vander Heiden <jason.vanderheiden@yale.edu>
Diff between shazam versions 0.1.9 dated 2018-03-31 and 0.1.10 dated 2018-09-20
shazam-0.1.10/shazam/DESCRIPTION | 30 - shazam-0.1.10/shazam/MD5 | 110 ++-- shazam-0.1.10/shazam/NAMESPACE | 9 shazam-0.1.10/shazam/NEWS.md | 31 + shazam-0.1.10/shazam/R/Baseline.R | 136 ++++- shazam-0.1.10/shazam/R/Core.R | 165 ------- shazam-0.1.10/shazam/R/DistToNearest.R | 324 +++++++++----- shazam-0.1.10/shazam/R/MutationProfiling.R | 98 ++-- shazam-0.1.10/shazam/R/Shazam.R | 9 shazam-0.1.10/shazam/build/vignette.rds |binary shazam-0.1.10/shazam/data/HH_S1F.rda |binary shazam-0.1.10/shazam/data/HH_S5F.rda |binary shazam-0.1.10/shazam/data/HKL_S1F.rda |binary shazam-0.1.10/shazam/data/HKL_S5F.rda |binary shazam-0.1.10/shazam/data/MK_RS1NF.rda |binary shazam-0.1.10/shazam/data/MK_RS5NF.rda |binary shazam-0.1.10/shazam/data/U5N.rda |binary shazam-0.1.10/shazam/inst/doc/Baseline-Vignette.R | 7 shazam-0.1.10/shazam/inst/doc/Baseline-Vignette.Rmd | 30 + shazam-0.1.10/shazam/inst/doc/Baseline-Vignette.pdf |binary shazam-0.1.10/shazam/inst/doc/DistToNearest-Vignette.R | 32 - shazam-0.1.10/shazam/inst/doc/DistToNearest-Vignette.Rmd | 66 +- shazam-0.1.10/shazam/inst/doc/DistToNearest-Vignette.pdf |binary shazam-0.1.10/shazam/inst/doc/Mutation-Vignette.pdf |binary shazam-0.1.10/shazam/inst/doc/Shmulate-Vignette.Rmd | 6 shazam-0.1.10/shazam/inst/doc/Shmulate-Vignette.pdf |binary shazam-0.1.10/shazam/inst/doc/Targeting-Vignette.pdf |binary shazam-0.1.10/shazam/man/Baseline-class.Rd | 1 shazam-0.1.10/shazam/man/DensityThreshold-class.Rd | 1 shazam-0.1.10/shazam/man/GmmThreshold-class.Rd | 1 shazam-0.1.10/shazam/man/calcBaseline.Rd | 7 shazam-0.1.10/shazam/man/calcExpectedMutations.Rd | 5 shazam-0.1.10/shazam/man/calcObservedMutations.Rd | 31 - shazam-0.1.10/shazam/man/collapseClones.Rd | 13 shazam-0.1.10/shazam/man/createMutabilityMatrix.Rd | 5 shazam-0.1.10/shazam/man/createMutationDefinition.Rd | 3 shazam-0.1.10/shazam/man/createRegionDefinition.Rd | 4 shazam-0.1.10/shazam/man/createSubstitutionMatrix.Rd | 5 shazam-0.1.10/shazam/man/createTargetingModel.Rd | 10 shazam-0.1.10/shazam/man/distToNearest.Rd | 16 shazam-0.1.10/shazam/man/editBaseline.Rd | 28 - shazam-0.1.10/shazam/man/findThreshold.Rd | 29 - shazam-0.1.10/shazam/man/groupBaseline.Rd | 4 shazam-0.1.10/shazam/man/observedMutations.Rd | 4 shazam-0.1.10/shazam/man/plotBaselineDensity.Rd | 11 shazam-0.1.10/shazam/man/plotBaselineSummary.Rd | 4 shazam-0.1.10/shazam/man/plotTune.Rd | 4 shazam-0.1.10/shazam/man/slideWindowTune.Rd | 4 shazam-0.1.10/shazam/man/slideWindowTunePlot.Rd | 6 shazam-0.1.10/shazam/man/summarizeBaseline.Rd | 7 shazam-0.1.10/shazam/man/testBaseline.Rd | 23 shazam-0.1.10/shazam/vignettes/Baseline-Vignette.Rmd | 30 + shazam-0.1.10/shazam/vignettes/DistToNearest-Vignette.Rmd | 66 +- shazam-0.1.10/shazam/vignettes/Shmulate-Vignette.Rmd | 6 shazam-0.1.9/shazam/inst/markr |only shazam-0.1.9/shazam/man/clearConsole.Rd |only shazam-0.1.9/shazam/man/getPlatform.Rd |only shazam-0.1.9/shazam/man/getnproc.Rd |only 58 files changed, 735 insertions(+), 646 deletions(-)
Title: An Integrated Framework for Textual Sentiment Time Series
Aggregation and Prediction
Description: Optimized prediction based on textual sentiment, accounting for the intrinsic challenge that sentiment can be computed and pooled across texts and time in various ways. See Ardia et al. (2017) <doi:10.2139/ssrn.3067734>.
Author: David Ardia [aut],
Keven Bluteau [aut],
Samuel Borms [aut, cre],
Kris Boudt [aut]
Maintainer: Samuel Borms <samuel.borms@unine.ch>
Diff between sentometrics versions 0.5 dated 2018-09-18 and 0.5.1 dated 2018-09-20
sentometrics-0.5.1/sentometrics/DESCRIPTION | 6 - sentometrics-0.5.1/sentometrics/MD5 | 36 ++++---- sentometrics-0.5.1/sentometrics/NAMESPACE | 3 sentometrics-0.5.1/sentometrics/NEWS.md | 6 + sentometrics-0.5.1/sentometrics/R/sentiment_engines.R | 41 +++++----- sentometrics-0.5.1/sentometrics/R/sentocorpus.R | 2 sentometrics-0.5.1/sentometrics/R/sentomeasures_main.R | 12 +- sentometrics-0.5.1/sentometrics/R/sentomeasures_methods.R | 6 - sentometrics-0.5.1/sentometrics/R/sentometrics.R | 7 - sentometrics-0.5.1/sentometrics/R/sentomodel.R | 6 - sentometrics-0.5.1/sentometrics/man/aggregate.sentiment.Rd |only sentometrics-0.5.1/sentometrics/man/compute_sentiment.Rd | 32 ++++--- sentometrics-0.5.1/sentometrics/man/ctr_agg.Rd | 2 sentometrics-0.5.1/sentometrics/man/get_loss_data.Rd | 6 - sentometrics-0.5.1/sentometrics/man/sento_corpus.Rd | 2 sentometrics-0.5.1/sentometrics/man/sentometrics-package.Rd | 7 - sentometrics-0.5.1/sentometrics/src/utils.h | 5 - sentometrics-0.5.1/sentometrics/tests/testthat/test_aggregation.R | 1 sentometrics-0.5.1/sentometrics/tests/testthat/test_sentiment_computation.R | 6 - sentometrics-0.5/sentometrics/man/aggregate.Rd |only 20 files changed, 108 insertions(+), 78 deletions(-)
Title: International Assessment Data Manager
Description: Provides tools for importing, merging, and analysing data from
international assessment studies (TIMSS, PIRLS, PISA. ICILS, and PIAAC).
Author: Daniel Caro <dcarov@gmail.com>, Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Maintainer: Daniel Caro <dcarov@gmail.com>
Diff between intsvy versions 2.1 dated 2017-11-08 and 2.2 dated 2018-09-20
DESCRIPTION | 14 - MD5 | 108 ++++++------- NAMESPACE | 20 ++ R/intsvy.ben.pv.R | 49 +++++- R/intsvy.config.R | 2 R/intsvy.log.R | 49 ++++++ R/intsvy.log.pv.R | 60 +++++++ R/intsvy.mean.R | 36 ++++ R/intsvy.mean.pv.R | 46 +++++ R/intsvy.per.pv.R | 37 ++++ R/intsvy.reg.R | 48 +++++- R/intsvy.reg.pv.R | 55 ++++++- R/intsvy.select.merge.R | 19 +- R/intsvy.table.R | 42 ++++- R/intsvy.var.label.R | 15 + R/pirls.ben.pv.R | 8 + R/pirls.log.R | 9 + R/pirls.log.pv.R | 9 + R/pirls.mean.R | 11 + R/pirls.mean.pv.R | 9 + R/pirls.per.pv.R | 8 + R/pirls.reg.R | 10 + R/pirls.reg.pv.R | 8 + R/surv_conf.R | 373 ++++++++++++++++++++++++++++-------------------- R/sysdata.rda |binary R/timss.ben.pv.R | 7 R/timss.log.R | 9 + R/timss.log.pv.R | 12 + R/timss.mean.R | 9 + R/timss.mean.pv.R | 25 ++- R/timss.per.pv.R | 9 + R/timss.reg.R | 8 + R/timss.reg.pv.R | 21 +- R/timss.table.R | 13 + man/confs.Rd | 2 man/intsvy-package.Rd | 6 man/intsvy.config.Rd | 4 man/intsvy.per.pv.Rd | 4 man/pirls.ben.pv.Rd | 1 man/pirls.log.Rd | 1 man/pirls.log.pv.Rd | 1 man/pirls.mean.Rd | 1 man/pirls.mean.pv.Rd | 3 man/pirls.per.pv.Rd | 1 man/pirls.reg.Rd | 1 man/pirls.reg.pv.Rd | 1 man/timss.ben.pv.Rd | 1 man/timss.log.Rd | 1 man/timss.log.pv.Rd | 1 man/timss.mean.Rd | 1 man/timss.mean.pv.Rd | 103 ++++++------- man/timss.per.pv.Rd | 1 man/timss.reg.Rd | 1 man/timss.reg.pv.Rd | 109 +++++++------- man/timss.table.Rd | 1 55 files changed, 1014 insertions(+), 389 deletions(-)
Title: Estimation Methods for Gravity Models
Description: A wrapper of different standard estimation methods for gravity models.
This package provides estimation methods for log-log models and multiplicative models.
Author: Anna-Lena Woelwer [aut],
Jan Pablo Burgard [aut],
Joshua Kunst [aut],
Mauricio Vargas [aut, cre]
Maintainer: Mauricio Vargas <mvargas@dcc.uchile.cl>
Diff between gravity versions 0.6 dated 2017-12-14 and 0.8.5 dated 2018-09-20
gravity-0.6/gravity/R/BVU.R |only gravity-0.6/gravity/R/BVW.R |only gravity-0.6/gravity/R/DDM.R |only gravity-0.6/gravity/R/EK_Tobit.R |only gravity-0.6/gravity/R/ET_Tobit.R |only gravity-0.6/gravity/R/Fixed_effects.R |only gravity-0.6/gravity/R/GPML.R |only gravity-0.6/gravity/R/Gravity_Data_Example_with_zero_trade.R |only gravity-0.6/gravity/R/Gravity_Data_Example_without_zero_trade.R |only gravity-0.6/gravity/R/NBPML.R |only gravity-0.6/gravity/R/NLS.R |only gravity-0.6/gravity/R/OLS.R |only gravity-0.6/gravity/R/PPML.R |only gravity-0.6/gravity/R/SILS.R |only gravity-0.6/gravity/R/Tetrads.R |only gravity-0.6/gravity/R/Tobit.R |only gravity-0.6/gravity/R/gravity-internal.R |only gravity-0.6/gravity/data/Gravity_no_zeros.RData |only gravity-0.6/gravity/data/Gravity_zeros.RData |only gravity-0.6/gravity/man/BVU.Rd |only gravity-0.6/gravity/man/BVW.Rd |only gravity-0.6/gravity/man/DDM.Rd |only gravity-0.6/gravity/man/EK_Tobit.Rd |only gravity-0.6/gravity/man/ET_Tobit.Rd |only gravity-0.6/gravity/man/Fixed_Effects.Rd |only gravity-0.6/gravity/man/GPML.Rd |only gravity-0.6/gravity/man/Gravity_no_zeros.Rd |only gravity-0.6/gravity/man/Gravity_zeros.Rd |only gravity-0.6/gravity/man/NBPML.Rd |only gravity-0.6/gravity/man/NLS.Rd |only gravity-0.6/gravity/man/OLS.Rd |only gravity-0.6/gravity/man/PPML.Rd |only gravity-0.6/gravity/man/SILS.Rd |only gravity-0.6/gravity/man/Tetrads.Rd |only gravity-0.6/gravity/man/Tobit.Rd |only gravity-0.8.5/gravity/DESCRIPTION | 38 ++- gravity-0.8.5/gravity/MD5 | 97 ++++++---- gravity-0.8.5/gravity/NAMESPACE | 59 ++++-- gravity-0.8.5/gravity/R/bvu.R |only gravity-0.8.5/gravity/R/bvw.R |only gravity-0.8.5/gravity/R/ddm.R |only gravity-0.8.5/gravity/R/ek_tobit.R |only gravity-0.8.5/gravity/R/et_tobit.R |only gravity-0.8.5/gravity/R/fixed_effects.R |only gravity-0.8.5/gravity/R/gpml.R |only gravity-0.8.5/gravity/R/gravity_package.R |only gravity-0.8.5/gravity/R/nbpml.R |only gravity-0.8.5/gravity/R/nls.R |only gravity-0.8.5/gravity/R/ols.R |only gravity-0.8.5/gravity/R/ppml.R |only gravity-0.8.5/gravity/R/robust_summary.R |only gravity-0.8.5/gravity/R/sils.R |only gravity-0.8.5/gravity/R/tetrads.R |only gravity-0.8.5/gravity/R/tobit.R |only gravity-0.8.5/gravity/build |only gravity-0.8.5/gravity/data/gravity_no_zeros.rdata |only gravity-0.8.5/gravity/data/gravity_zeros.rdata |only gravity-0.8.5/gravity/inst |only gravity-0.8.5/gravity/man/bvu.Rd |only gravity-0.8.5/gravity/man/bvw.Rd |only gravity-0.8.5/gravity/man/ddm.Rd |only gravity-0.8.5/gravity/man/ek_tobit.Rd |only gravity-0.8.5/gravity/man/et_tobit.Rd |only gravity-0.8.5/gravity/man/fixed_effects.Rd |only gravity-0.8.5/gravity/man/gpml.Rd |only gravity-0.8.5/gravity/man/gravity-exports.Rd |only gravity-0.8.5/gravity/man/gravity_no_zeros.Rd |only gravity-0.8.5/gravity/man/gravity_zeros.Rd |only gravity-0.8.5/gravity/man/nbpml.Rd |only gravity-0.8.5/gravity/man/nls.Rd |only gravity-0.8.5/gravity/man/ols.Rd |only gravity-0.8.5/gravity/man/ppml.Rd |only gravity-0.8.5/gravity/man/sils.Rd |only gravity-0.8.5/gravity/man/tetrads.Rd |only gravity-0.8.5/gravity/man/tobit.Rd |only gravity-0.8.5/gravity/tests |only gravity-0.8.5/gravity/vignettes |only 77 files changed, 130 insertions(+), 64 deletions(-)
Title: Measuring Disparity in R
Description: A modular package for measuring disparity from multidimensional matrices. Disparity can be calculated from any matrix defining a multidimensional space. The package provides a set of implemented metrics to measure properties of the space and allows users to provide and test their own metrics. The package also provides functions for looking at disparity in a serial way (e.g. disparity through time) or per groups as well as visualising the results. Finally, this package provides several basic statistical tests for disparity analysis.
Author: Thomas Guillerme [aut, cre, cph],
Mark N Puttick [aut, cph]
Maintainer: Thomas Guillerme <guillert@tcd.ie>
Diff between dispRity versions 1.0.3 dated 2018-03-22 and 1.2 dated 2018-09-20
dispRity-1.0.3/dispRity/R/get.parameters.R |only dispRity-1.2/dispRity/DESCRIPTION | 26 +-- dispRity-1.2/dispRity/MD5 | 124 +++++++++-------- dispRity-1.2/dispRity/NAMESPACE | 101 +++++++------ dispRity-1.2/dispRity/NEWS.md | 166 ++++++++++++++++------- dispRity-1.2/dispRity/R/adonis.dispRity.R | 12 - dispRity-1.2/dispRity/R/boot.matrix.R | 111 ++++++++++++++- dispRity-1.2/dispRity/R/boot.matrix_fun.R | 27 ++- dispRity-1.2/dispRity/R/char.diff.R | 83 ++++++----- dispRity-1.2/dispRity/R/char.diff_fun.R | 76 ---------- dispRity-1.2/dispRity/R/check.morpho.R | 14 - dispRity-1.2/dispRity/R/chrono.subsets.R | 37 ++--- dispRity-1.2/dispRity/R/clean.data.R | 2 dispRity-1.2/dispRity/R/crown.stem.R | 4 dispRity-1.2/dispRity/R/custom.subsets.R | 30 ++-- dispRity-1.2/dispRity/R/dispRity-package.R | 23 ++- dispRity-1.2/dispRity/R/dispRity.R | 8 - dispRity-1.2/dispRity/R/dispRity.metric.R | 33 ++-- dispRity-1.2/dispRity/R/dispRity.utilities.R | 55 +++---- dispRity-1.2/dispRity/R/dtt.dispRity.R | 78 +++++++++- dispRity-1.2/dispRity/R/dtt.dispRity_fun.R | 132 ++++++++++-------- dispRity-1.2/dispRity/R/geomorph.ordination.R | 6 dispRity-1.2/dispRity/R/get.bin.ages.R | 4 dispRity-1.2/dispRity/R/make.demo.data.R |only dispRity-1.2/dispRity/R/make.dispRity.models.R |only dispRity-1.2/dispRity/R/make.metric.R | 8 - dispRity-1.2/dispRity/R/model.test.R |only dispRity-1.2/dispRity/R/model.test.sim.R |only dispRity-1.2/dispRity/R/model.test.wrapper.R |only dispRity-1.2/dispRity/R/model.test_fun.R |only dispRity-1.2/dispRity/R/morpho.utilities.R | 10 - dispRity-1.2/dispRity/R/null.test.R | 4 dispRity-1.2/dispRity/R/pair.plot.R | 8 - dispRity-1.2/dispRity/R/plot.dispRity.R | 114 ++++++++++++--- dispRity-1.2/dispRity/R/plot.dispRity_fun.R | 114 ++++++--------- dispRity-1.2/dispRity/R/print.dispRity.R | 70 ++++++++- dispRity-1.2/dispRity/R/sanitizing.R | 6 dispRity-1.2/dispRity/R/sequential.test.R |only dispRity-1.2/dispRity/R/sequential.test_fun.R |only dispRity-1.2/dispRity/R/sim.morpho.R | 6 dispRity-1.2/dispRity/R/slice.tree.R | 5 dispRity-1.2/dispRity/R/space.maker.R | 6 dispRity-1.2/dispRity/R/ssptest.support.R |only dispRity-1.2/dispRity/R/summary.dispRity.R | 58 ++++++-- dispRity-1.2/dispRity/R/summary.dispRity_fun.R | 2 dispRity-1.2/dispRity/R/test.dispRity.R | 55 ++----- dispRity-1.2/dispRity/R/tree.age.R | 6 dispRity-1.2/dispRity/R/zzz.R | 6 dispRity-1.2/dispRity/README.md |only dispRity-1.2/dispRity/data/BeckLee_disparity.rda |only dispRity-1.2/dispRity/inst/CITATION | 46 ++++-- dispRity-1.2/dispRity/inst/References.bib |only dispRity-1.2/dispRity/inst/packages.bib |only dispRity-1.2/dispRity/inst/vignettes |only dispRity-1.2/dispRity/man/BeckLee.Rd | 3 dispRity-1.2/dispRity/man/BeckLee_disparity.Rd |only dispRity-1.2/dispRity/man/boot.matrix.Rd | 15 +- dispRity-1.2/dispRity/man/check.morpho.Rd | 2 dispRity-1.2/dispRity/man/chrono.subsets.Rd | 9 - dispRity-1.2/dispRity/man/custom.subsets.Rd | 4 dispRity-1.2/dispRity/man/dispRity.Rd | 2 dispRity-1.2/dispRity/man/dispRity.metric.Rd | 10 + dispRity-1.2/dispRity/man/disparity.Rd | 4 dispRity-1.2/dispRity/man/dtt.dispRity.Rd | 7 dispRity-1.2/dispRity/man/geomorph.ordination.Rd | 4 dispRity-1.2/dispRity/man/model.test.Rd |only dispRity-1.2/dispRity/man/model.test.sim.Rd |only dispRity-1.2/dispRity/man/model.test.wrapper.Rd |only dispRity-1.2/dispRity/man/rescale.dispRity.Rd | 2 dispRity-1.2/dispRity/man/slice.tree.Rd | 3 dispRity-1.2/dispRity/man/test.dispRity.Rd | 3 dispRity-1.2/dispRity/src/char.diff.c | 2 72 files changed, 1084 insertions(+), 662 deletions(-)
Title: Dens-Based Method for Partial Correlation Estimation in Large
Scale Brain Networks
Description: Provide a Dens-based method for estimating functional connection in large scale brain networks using partial correlation.
Author: Yikai Wang, Jian Kang, Phebe Brenne Kemmer and Ying Guo
Maintainer: Yikai Wang <johnzon.wyk@gmail.com>
Diff between DensParcorr versions 1.0 dated 2016-04-09 and 1.1 dated 2018-09-20
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/DensParcorr.R | 40 ++++++++++++++++++++++++++++++++++++++-- man/DensParcorr.Rd | 3 ++- 4 files changed, 48 insertions(+), 11 deletions(-)
Title: Cryptocurrency Market Data
Description: Retrieves crypto currency current and historical information as well as information on the exchanges they are listed on. For current and historical it will retrieve the daily open, high, low and close values for all crypto currencies. This retrieves the historical market data by web scraping tables provided by 'Cryptocurrency Market Capitalizations' <https://coinmarketcap.com>.
Author: Jesse Vent [aut, cre]
Maintainer: Jesse Vent <cryptopackage@icloud.com>
Diff between crypto versions 1.0.2 dated 2018-05-30 and 1.0.3 dated 2018-09-20
DESCRIPTION | 14 +++--- MD5 | 24 +++++----- NAMESPACE | 3 + NEWS.md | 11 ++++ R/crypto2xts.R | 4 - R/crypto_markets.R | 38 ++++++++-------- R/encoding.R | 31 +++++++------ R/getCoins.R | 35 +++++++++++++-- R/getExchanges.R | 37 ++++++++++------ R/getPrices.R | 4 - R/listCoins.R | 121 +++++++++++++++++++++++++---------------------------- R/scraper.R | 2 man/getCoins.Rd | 7 ++- 13 files changed, 192 insertions(+), 139 deletions(-)
Title: Design and Analysis of Locally or Globally Efficient Adaptive
Designs
Description: Provides the functions for planning and conducting a
clinical trial with adaptive sample size determination. Maximal statistical
efficiency will be exploited even when dramatic or multiple adaptations
are made. Such a trial consists of adaptive determination of sample size
at an interim analysis and implementation of frequentist statistical test at the
interim and final analysis with a prefixed significance level. The required
assumptions for the stage-wise test statistics are independent and stationary
increments and normality. Predetermination of adaptation rule is not required.
Author: Kosuke Kashiwabara [aut, cre]
Maintainer: Kosuke Kashiwabara <kashiwabara-tky@umin.ac.jp>
Diff between adpss versions 0.1.0 dated 2018-07-18 and 0.1.1 dated 2018-09-20
DESCRIPTION | 6 MD5 | 14 NEWS.md | 27 + R/work_test_norm_local.R | 140 +++++++ build/vignette.rds |binary inst/doc/adpss_ex.html | 8 man/adaptive_analysis_norm_local.Rd | 7 src/working_test_norm_c.cpp | 672 ++++++++++++++++++++++++------------ 8 files changed, 631 insertions(+), 243 deletions(-)
Title: Growth Charts via Regression Quantiles
Description: Fits non-crossing regression quantiles as a function of linear covariates and multiple smooth terms via B-splines with L1-norm difference penalties. Monotonicity constraints on the fitted curves are allowed. See Muggeo, Sciandra, Tomasello and Calvo (2013) <doi:10.1007/s10651-012-0232-1> and <doi:10.13140/RG.2.2.12924.85122> for some code example.
Author: Vito M. R. Muggeo [aut, cre] (<https://orcid.org/0000-0002-3386-4054>)
Maintainer: Vito M. R. Muggeo <vito.muggeo@unipa.it>
Diff between quantregGrowth versions 0.4-2 dated 2018-05-21 and 0.4-3 dated 2018-09-20
DESCRIPTION | 10 ++++---- MD5 | 20 ++++++++--------- NEWS | 15 ++++++++++--- R/gcrq.R | 21 +++++++++++++++--- R/plot.gcrq.R | 32 ++++++++++++++++++++++------ R/predict.gcrq.R | 48 ++++++++++++++++++++++++++++++++---------- man/gcrq.Rd | 14 +++++++++--- man/plot.gcrq.Rd | 6 ++--- man/predict.gcrq.Rd | 10 ++++++-- man/ps.Rd | 3 -- man/quantregGrowth-package.Rd | 4 +-- 11 files changed, 132 insertions(+), 51 deletions(-)
More information about quantregGrowth at CRAN
Permanent link
Title: Extra String Manipulation Functions
Description: There are some things that I wish were easier with the 'stringr'
or 'stringi' packages. The foremost of these is the extraction of numbers
from strings. 'stringr' and 'stringi' make you figure out the regular
expression for yourself; 'strex' takes care of this for you. There are many
other handy functionalities in 'strex'. Contributions to this package are
encouraged: it is intended as a miscellany of string manipulation functions
that cannot be found in 'stringi' or 'stringr'.
Author: Rory Nolan [aut, cre] (<https://orcid.org/0000-0002-5239-4043>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between strex versions 0.1.0 dated 2018-08-31 and 0.1.1 dated 2018-09-20
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS.md | 8 +++++++- R/utils.R | 19 +++++++++++++++++++ README.md | 4 ++-- build/partial.rdb |binary inst/doc/alphordering-numbers.html | 4 ++-- inst/doc/argument-matching.html | 4 ++-- inst/doc/before-and-after.html | 4 ++-- inst/doc/important-miscellany.html | 4 ++-- inst/doc/numbers-in-strings.html | 4 ++-- tests/testthat/test-Rcpp.R | 35 +++++++++++++++++++++++++++-------- 12 files changed, 79 insertions(+), 35 deletions(-)
Title: Functions for Soil Texture Plot, Classification and
Transformation
Description: "The Soil Texture Wizard" is a set of R functions designed to produce texture triangles (also called texture plots, texture diagrams, texture ternary plots), classify and transform soil textures data. These functions virtually allows to plot any soil texture triangle (classification) into any triangle geometry (isosceles, right-angled triangles, etc.). This set of function is expected to be useful to people using soil textures data from different soil texture classification or different particle size systems. Many (> 15) texture triangles from all around the world are predefined in the package. A simple text based graphical user interface is provided: soiltexture_gui().
Author: Julien Moeys [aut, cre],
Wei Shangguan [ctb],
Rainer Petzold [ctb],
Budiman Minasny [ctb],
Bogdan Rosca [ctb],
Nic Jelinski [ctb],
Wiktor Zelazny [ctb],
Rodolfo Marcondes Silva Souza [ctb],
Jose Lucas Safanelli [ctb],
Alexandre ten Caten [ctb]
Maintainer: Julien Moeys <jules_m78-soiltexture@yahoo.fr>
Diff between soiltexture versions 1.4.6 dated 2018-05-01 and 1.5.1 dated 2018-09-20
DESCRIPTION | 10 ++-- MD5 | 24 +++++----- NEWS | 22 +++++++++ R/soiltexture.R | 59 +++++++++++++++++++++++++ build/partial.rdb |only build/vignette.rds |binary inst/GIT_REVISION | 2 inst/GIT_VERSION |only inst/doc/soiltexture_vignette.pdf | 89 ++++++++++++++++++++------------------ inst/languages.rds |binary inst/triangles.rds |binary man/TT.plot.Rd | 1 man/soiltexture-package.Rd | 47 +++++++++----------- tests/TT.plot.R | 1 14 files changed, 172 insertions(+), 83 deletions(-)
Title: LP Nonparametric High Dimensional K-Sample Comparison
Description: LP nonparametric high-dimensional K-sample comparison method that includes
(i) confirmatory test, (ii) exploratory analysis, and (iii) options to output a data-driven
LP-transformed matrix for classification.
The primary reference is Mukhopadhyay, S. and Wang, K. (2018, Technical Report).
Author: Subhadeep Mukhopadhyay, Kaijun Wang
Maintainer: Kaijun Wang <kaijun.wang@temple.edu>
Diff between LPKsample versions 1.0 dated 2017-11-20 and 2.0 dated 2018-09-20
LPKsample-1.0/LPKsample/R/LP.smooth.R |only LPKsample-2.0/LPKsample/DESCRIPTION | 15 +- LPKsample-2.0/LPKsample/MD5 | 27 +-- LPKsample-2.0/LPKsample/NAMESPACE | 4 LPKsample-2.0/LPKsample/R/GLP.R | 160 ++++++++++++++++------- LPKsample-2.0/LPKsample/R/LP.comean.R | 25 ++- LPKsample-2.0/LPKsample/R/W.Gen.R | 4 LPKsample-2.0/LPKsample/R/graph.clust.test.R | 34 ++-- LPKsample-2.0/LPKsample/build/partial.rdb |binary LPKsample-2.0/LPKsample/data/leukemia.rda |binary LPKsample-2.0/LPKsample/man/GLP.Rd | 29 ++-- LPKsample-2.0/LPKsample/man/LP.comean.Rd | 9 - LPKsample-2.0/LPKsample/man/LPKsample-package.Rd | 2 LPKsample-2.0/LPKsample/man/LPT.Rd | 2 LPKsample-2.0/LPKsample/man/W.Gen.Rd | 6 15 files changed, 204 insertions(+), 113 deletions(-)
Title: Datasets from the Datasaurus Dozen
Description: The Datasaurus Dozen is a set of datasets with the same summary statistics. They
retain the same summary statistics despite having radically different distributions.
The datasets represent a larger and quirkier object lesson that is typically taught
via Anscombe's Quartet (available in the 'datasets' package). Anscombe's Quartet
contains four very different distributions with the same summary statistics and as
such highlights the value of visualisation in understanding data, over and above
summary statistics. As well as being an engaging variant on the Quartet, the data
is generated in a novel way. The simulated annealing process used to derive datasets
from the original Datasaurus is detailed in "Same Stats, Different Graphs: Generating
Datasets with Varied Appearance and Identical Statistics through Simulated Annealing"
<doi:10.1145/3025453.3025912>.
Author: Steph Locke [cre, aut],
Alberto Cairo [dtc],
Justin Matejka [dtc],
George Fitzmaurice [dtc],
Lucy D'Agostino McGowan [aut],
Richard Cotton [ctb],
Locke Data [fnd]
Maintainer: Steph Locke <stephanie.g.locke@gmail.com>
Diff between datasauRus versions 0.1.2 dated 2017-05-08 and 0.1.4 dated 2018-09-20
datasauRus-0.1.2/datasauRus/inst/extdata/SimpsonsParadox-wide.tsv |only datasauRus-0.1.4/datasauRus/DESCRIPTION | 25 datasauRus-0.1.4/datasauRus/LICENSE | 4 datasauRus-0.1.4/datasauRus/MD5 | 84 datasauRus-0.1.4/datasauRus/NEWS.md | 16 datasauRus-0.1.4/datasauRus/R/Datasaurus-package.r | 478 datasauRus-0.1.4/datasauRus/README.md | 182 datasauRus-0.1.4/datasauRus/README/README-unnamed-chunk-2-1.png |binary datasauRus-0.1.4/datasauRus/build/vignette.rds |binary datasauRus-0.1.4/datasauRus/data/box_plots.rda |binary datasauRus-0.1.4/datasauRus/data/datasaurus_dozen.rda |binary datasauRus-0.1.4/datasauRus/data/datasaurus_dozen_wide.rda |binary datasauRus-0.1.4/datasauRus/data/simpsons_paradox.rda |binary datasauRus-0.1.4/datasauRus/data/simpsons_paradox_wide.rda |binary datasauRus-0.1.4/datasauRus/data/twelve_from_slant_alternate_long.rda |binary datasauRus-0.1.4/datasauRus/data/twelve_from_slant_alternate_wide.rda |binary datasauRus-0.1.4/datasauRus/data/twelve_from_slant_long.rda |binary datasauRus-0.1.4/datasauRus/data/twelve_from_slant_wide.rda |binary datasauRus-0.1.4/datasauRus/inst/doc/Datasaurus.R | 30 datasauRus-0.1.4/datasauRus/inst/doc/Datasaurus.Rmd | 92 datasauRus-0.1.4/datasauRus/inst/doc/Datasaurus.html | 344 datasauRus-0.1.4/datasauRus/inst/examples/box_plots.R | 74 datasauRus-0.1.4/datasauRus/inst/examples/datasauRus.R | 18 datasauRus-0.1.4/datasauRus/inst/examples/datasaurus_dozen.R | 14 datasauRus-0.1.4/datasauRus/inst/examples/datasaurus_dozen_wide.R | 32 datasauRus-0.1.4/datasauRus/inst/examples/simpsons_paradox.R | 12 datasauRus-0.1.4/datasauRus/inst/examples/simpsons_paradox_wide.R | 30 datasauRus-0.1.4/datasauRus/inst/examples/twelve_from_slant_alternate_long.R | 14 datasauRus-0.1.4/datasauRus/inst/examples/twelve_from_slant_alternate_wide.R | 32 datasauRus-0.1.4/datasauRus/inst/examples/twelve_from_slant_long.R | 14 datasauRus-0.1.4/datasauRus/inst/examples/twelve_from_slant_wide.R | 32 datasauRus-0.1.4/datasauRus/inst/extdata/BoxPlots.tsv | 4970 +++++----- datasauRus-0.1.4/datasauRus/inst/extdata/DatasaurusDozen-wide.tsv | 288 datasauRus-0.1.4/datasauRus/inst/extdata/DatasaurusDozen.tsv | 3694 +++---- datasauRus-0.1.4/datasauRus/inst/extdata/SimpsonsParadox-Wide.tsv |only datasauRus-0.1.4/datasauRus/inst/extdata/SimpsonsParadox.tsv | 890 - datasauRus-0.1.4/datasauRus/inst/extdata/TwelveFromSlant-long.tsv | 4370 ++++---- datasauRus-0.1.4/datasauRus/inst/extdata/TwelveFromSlant-wide.tsv | 368 datasauRus-0.1.4/datasauRus/inst/extdata/TwelveFromSlant_alternate-long.tsv | 4370 ++++---- datasauRus-0.1.4/datasauRus/inst/extdata/TwelveFromSlant_alternate-wide.tsv | 368 datasauRus-0.1.4/datasauRus/tests/testthat.R | 8 datasauRus-0.1.4/datasauRus/tests/testthat/test-datasets.R | 90 datasauRus-0.1.4/datasauRus/tests/testthat/test-rawfiles.R | 14 datasauRus-0.1.4/datasauRus/vignettes/Datasaurus.Rmd | 92 44 files changed, 10663 insertions(+), 10386 deletions(-)
Title: Goodness of Fit Tests for Logistic Regression Models
Description: Functions to assess the goodness of fit of binary, multinomial and ordinal logistic models.
Included are the Hosmer-Lemeshow tests (binary, multinomial and ordinal) and the Lipsitz and
Pulkstenis-Robinson tests (ordinal).
Author: Matthew Jay [aut, cre]
Maintainer: Matthew Jay <matthew.jay.15@ucl.ac.uk>
Diff between generalhoslem versions 1.3.2 dated 2017-12-02 and 1.3.3 dated 2018-09-20
generalhoslem-1.3.2/generalhoslem/R/generalhoslem-internal.R |only generalhoslem-1.3.3/generalhoslem/DESCRIPTION | 8 +++--- generalhoslem-1.3.3/generalhoslem/MD5 | 13 +++++------ generalhoslem-1.3.3/generalhoslem/R/logitgof.R | 3 -- generalhoslem-1.3.3/generalhoslem/R/pulkrob.chisq.R | 11 +++++---- generalhoslem-1.3.3/generalhoslem/R/pulkrob.deviance.R | 11 +++++---- generalhoslem-1.3.3/generalhoslem/build/partial.rdb |binary generalhoslem-1.3.3/generalhoslem/man/lipsitz.test.Rd | 2 - 8 files changed, 26 insertions(+), 22 deletions(-)
Title: Technical Trading Rules
Description: Functions and data to construct technical trading rules with R.
Author: Joshua Ulrich
Maintainer: Joshua Ulrich <josh.m.ulrich@gmail.com>
Diff between TTR versions 0.23-3 dated 2018-01-24 and 0.23-4 dated 2018-09-20
DESCRIPTION | 7 +-- MD5 | 25 +++++------ R/MovingAverages.R | 31 +++++++------ R/TTR-package.R | 11 ++-- R/WebData.R | 8 ++- R/volatility.R | 2 inst/unitTests/runit.TTR.MovingAverages.R | 6 ++ man/TTR.Rd | 12 ++--- man/WebData.Rd | 6 +- man/volatility.Rd | 2 src/aroon.c | 9 ---- src/init.c | 8 ++- src/moving_averages.c | 67 ++++++++++++++++++------------ src/ttr.h |only 14 files changed, 110 insertions(+), 84 deletions(-)
Title: L-Moments, Censored L-Moments, Trimmed L-Moments, L-Comoments,
and Many Distributions
Description: Extensive functions for L-moments (LMs) and probability-weighted moments
(PWMs), parameter estimation for distributions, LM computation for distributions, and
L-moment ratio diagrams. Maximum likelihood and maximum product of spacings estimation
are also available. LMs for right-tail and left-tail censoring by known or unknown
threshold and by indicator variable are available. Asymmetric (asy) trimmed LMs
(TL-moments, TLMs) are supported. LMs of residual (resid) and reversed (rev) resid life
are implemented along with 13 quantile function operators for reliability and survival
analyses. Exact analytical bootstrap estimates of order statistics, LMs, and variances-
covariances of LMs are provided. The Harri-Coble Tau34-squared Normality Test is available.
Distribution support with "L" (LMs), "TL" (TLMs) and added (+) support for right-tail
censoring (RC) encompasses: Asy Exponential (Exp) Power [L], Asy Triangular [L],
Cauchy [TL], Eta-Mu [L], Exp. [L], Gamma [L], Generalized (Gen) Exp Poisson [L],
Gen Extreme Value [L], Gen Lambda [L,TL], Gen Logistic [L), Gen Normal [L],
Gen Pareto [L+RC, TL], Govindarajulu [L], Gumbel [L], Kappa [L], Kappa-Mu [L],
Kumaraswamy [L], Laplace [L], Linear Mean Resid. Quantile Function [L], Normal [L],
3-p log-Normal [L], Pearson Type III [L], Rayleigh [L], Rev-Gumbel [L+RC], Rice/Rician [L],
Slash [TL], 3-p Student t [L], Truncated Exponential [L], Wakeby [L], and Weibull [L].
Multivariate sample L-comoments (LCMs) are implemented to measure asymmetric associations.
Author: William Asquith
Maintainer: William Asquith <william.asquith@ttu.edu>
Diff between lmomco versions 2.3.1 dated 2018-03-08 and 2.3.2 dated 2018-09-20
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- NEWS | 23 +++++++++++++++++++++++ R/add.lmomco.axis.R | 35 +++++++++++++++++++++++------------ R/add.log.axis.R | 14 ++++++++++++-- R/parkap.R | 42 +++++++++++++++++++++++++----------------- R/plotlmrdia.R | 44 ++++++++++++++++++++++++-------------------- inst/ACKNOWLEDGEMENTS | 4 +++- man/add.lmomco.axis.Rd | 4 +++- man/add.log.axis.Rd | 14 ++++++++------ man/fliplmoms.Rd | 5 ++--- man/lmomco-package.Rd | 18 +++++++++--------- man/lmomglo.Rd | 2 +- man/paraep4.Rd | 4 ++-- man/parkap.Rd | 12 ++++++++++-- man/plotlmrdia.Rd | 41 +++++++++++++++++++++-------------------- 16 files changed, 185 insertions(+), 115 deletions(-)
Title: Visualizing Social Science Data with 'ggplot2'
Description: A 'ggplot2' extension for implementing parliament charts and several other useful visualizations.
Author: Frederik Tiedemann [aut, cre]
Maintainer: Frederik Tiedemann <fj.tiedemann@googlemail.com>
Diff between ggpol versions 0.0.3 dated 2018-07-15 and 0.0.4 dated 2018-09-20
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NAMESPACE | 8 ++++++++ NEWS.md | 10 ++++++++++ R/facet_share.R | 3 ++- R/geom_bartext.R | 2 +- R/geom_boxjitter.R | 17 ++++++++++++++--- R/stat-boxjitter.R | 7 +++---- R/utilities.R | 2 +- README.md | 4 ++++ 10 files changed, 55 insertions(+), 22 deletions(-)
Title: Variance Estimation for Sample Surveys by the Ultimate Cluster
Method
Description: Generation of domain variables, linearization of several nonlinear population statistics (the ratio of two totals, weighted income percentile, relative median income ratio, at-risk-of-poverty rate, at-risk-of-poverty threshold, Gini coefficient, gender pay gap, the aggregate replacement ratio, the relative median income ratio, median income below at-risk-of-poverty gap, income quintile share ratio, relative median at-risk-of-poverty gap), computation of regression residuals in case of weight calibration, variance estimation of sample surveys by the ultimate cluster method (Hansen, Hurwitz and Madow,Theory, vol. I: Methods and Applications; vol. II: Theory. 1953, New York: John Wiley and Sons), variance estimation for longitudinal, cross-sectional measures and measures of change for single and multistage stage cluster sampling designs (Berger, Y. G., 2015, <doi:10.1111/rssa.12116>). Several other precision measures are derived - standard error, the coefficient of variation, the margin of error, confidence interval, design effect.
Author: Juris Breidaks [aut, cre],
Martins Liberts [aut],
Santa Ivanova [aut]
Maintainer: Juris Breidaks <Juris.Breidaks@csb.gov.lv>
Diff between vardpoor versions 0.11.0 dated 2018-09-12 and 0.12.0 dated 2018-09-20
DESCRIPTION | 14 +++++++------- MD5 | 4 ++-- R/vardchangstrs.R | 16 +++++++--------- 3 files changed, 16 insertions(+), 18 deletions(-)
Title: Get 'SNP' ('Single-Nucleotide' 'Polymorphism') Data on the Web
Description: A programmatic interface to various 'SNP' 'datasets'
on the web: 'OpenSNP' (<https://opensnp.org>), and 'NBCIs' 'dbSNP' database
(<https://www.ncbi.nlm.nih.gov/projects/SNP>). Functions
are included for searching for 'NCBI'. For 'OpenSNP', functions are included
for getting 'SNPs', and data for 'genotypes', 'phenotypes', annotations,
and bulk downloads of data by user.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Kevin Ushey [aut],
Hao Zhu [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rsnps versions 0.2.0 dated 2016-11-20 and 0.3.0 dated 2018-09-20
rsnps-0.2.0/rsnps/inst/ignore/ncbi_snp_summary.R |only rsnps-0.2.0/rsnps/man/LDSearch.Rd |only rsnps-0.2.0/rsnps/man/NCBI_snp_query.Rd |only rsnps-0.2.0/rsnps/man/NCBI_snp_query2.Rd |only rsnps-0.2.0/rsnps/tests/testthat/test-LDSearch.R |only rsnps-0.3.0/rsnps/DESCRIPTION | 36 - rsnps-0.3.0/rsnps/LICENSE | 2 rsnps-0.3.0/rsnps/MD5 | 112 +-- rsnps-0.3.0/rsnps/NAMESPACE | 9 rsnps-0.3.0/rsnps/NEWS.md | 25 rsnps-0.3.0/rsnps/R/LDSearch.R | 234 ------ rsnps-0.3.0/rsnps/R/NCBI_snp_query.R | 115 +-- rsnps-0.3.0/rsnps/R/NCBI_snp_query2.R | 65 + rsnps-0.3.0/rsnps/R/allgensnp.R | 47 - rsnps-0.3.0/rsnps/R/allphenotypes.R | 16 rsnps-0.3.0/rsnps/R/annotations.R | 13 rsnps-0.3.0/rsnps/R/deprecated-defunct.R |only rsnps-0.3.0/rsnps/R/download_users.R | 10 rsnps-0.3.0/rsnps/R/fetch_genotypes.R | 23 rsnps-0.3.0/rsnps/R/genotypes.R | 13 rsnps-0.3.0/rsnps/R/ncbi_snp_summary.R |only rsnps-0.3.0/rsnps/R/phenotypes.R | 17 rsnps-0.3.0/rsnps/R/phenotypes_byid.R | 21 rsnps-0.3.0/rsnps/R/rsnps-package.R | 22 rsnps-0.3.0/rsnps/R/users.R | 10 rsnps-0.3.0/rsnps/R/utils.R | 72 +- rsnps-0.3.0/rsnps/README.md | 87 -- rsnps-0.3.0/rsnps/build/vignette.rds |binary rsnps-0.3.0/rsnps/inst/doc/rsnps_vignette.Rmd | 564 +++++++--------- rsnps-0.3.0/rsnps/inst/doc/rsnps_vignette.html | 559 +++++++-------- rsnps-0.3.0/rsnps/inst/ignore/LDSearch_modified.R |only rsnps-0.3.0/rsnps/inst/vign/rsnps_vignette.Rmd | 30 rsnps-0.3.0/rsnps/inst/vign/rsnps_vignette.md | 564 +++++++--------- rsnps-0.3.0/rsnps/man/LDSearch-defunct.Rd |only rsnps-0.3.0/rsnps/man/NCBI_snp_query-defunct.Rd |only rsnps-0.3.0/rsnps/man/NCBI_snp_query2-defunct.Rd |only rsnps-0.3.0/rsnps/man/allgensnp.Rd | 27 rsnps-0.3.0/rsnps/man/allphenotypes.Rd | 23 rsnps-0.3.0/rsnps/man/annotations.Rd | 22 rsnps-0.3.0/rsnps/man/download_users.Rd | 11 rsnps-0.3.0/rsnps/man/fetch_genotypes.Rd | 47 - rsnps-0.3.0/rsnps/man/flip.Rd | 1 rsnps-0.3.0/rsnps/man/genotypes.Rd | 20 rsnps-0.3.0/rsnps/man/ld_search-defunct.Rd |only rsnps-0.3.0/rsnps/man/ncbi_snp_query.Rd |only rsnps-0.3.0/rsnps/man/ncbi_snp_query2.Rd |only rsnps-0.3.0/rsnps/man/ncbi_snp_summary.Rd |only rsnps-0.3.0/rsnps/man/phenotypes.Rd | 21 rsnps-0.3.0/rsnps/man/phenotypes_byid.Rd | 28 rsnps-0.3.0/rsnps/man/read_users.Rd | 3 rsnps-0.3.0/rsnps/man/rsnps-defunct.Rd |only rsnps-0.3.0/rsnps/man/rsnps-package.Rd | 24 rsnps-0.3.0/rsnps/man/rsnpsCache.Rd | 1 rsnps-0.3.0/rsnps/man/split_to_df.Rd | 15 rsnps-0.3.0/rsnps/man/swap.Rd | 3 rsnps-0.3.0/rsnps/man/tryget.Rd | 1 rsnps-0.3.0/rsnps/man/users.Rd | 13 rsnps-0.3.0/rsnps/tests/testthat/test-NCBI_snp_query.R | 19 rsnps-0.3.0/rsnps/tests/testthat/test-NCBI_snp_query2.R | 16 rsnps-0.3.0/rsnps/tests/testthat/test-allphenotypes.R | 2 rsnps-0.3.0/rsnps/tests/testthat/test-annotations.R | 10 rsnps-0.3.0/rsnps/tests/testthat/test-genotypes.R | 2 rsnps-0.3.0/rsnps/tests/testthat/test-phenotypes.R | 5 rsnps-0.3.0/rsnps/tests/testthat/test-phenotypes_byid.R | 10 rsnps-0.3.0/rsnps/vignettes/rsnps_vignette.Rmd | 564 +++++++--------- 65 files changed, 1628 insertions(+), 1926 deletions(-)
Title: Web Application Framework for 'PhUSE' Scripts
Description: Make it easy to review, download and execute scripts stored in Github
'phuse-scripts' repository <https://github.com/phuse-org/phuse-scripts>. Some examples
included show the web application framework using the script metadata. The 'PhUSE'
is Pharmaceutical Users Software Exchange <http://www.phuse.eu>.
Author: Hanming Tu [aut, cre]
Maintainer: Hanming Tu <hanming.tu@gmail.com>
Diff between phuse versions 0.1.5 dated 2018-01-05 and 0.1.6 dated 2018-09-20
phuse-0.1.5/phuse/man/buiuld_inputs.Rd |only phuse-0.1.6/phuse/DESCRIPTION | 8 phuse-0.1.6/phuse/MD5 | 37 phuse-0.1.6/phuse/NAMESPACE | 3 phuse-0.1.6/phuse/NEWS | 73 + phuse-0.1.6/phuse/R/build_inputs.R | 78 - phuse-0.1.6/phuse/R/build_script_df.R | 312 ++++--- phuse-0.1.6/phuse/R/cvt_list2df.R | 180 ++-- phuse-0.1.6/phuse/R/download_fns.R | 145 +-- phuse-0.1.6/phuse/R/get_inputs.R | 137 +-- phuse-0.1.6/phuse/R/get_yml_inputs.R | 103 +- phuse-0.1.6/phuse/R/read_yml.R | 62 - phuse-0.1.6/phuse/R/start_phuse.R | 78 + phuse-0.1.6/phuse/inst/examples/02_display/app.R | 414 +++++----- phuse-0.1.6/phuse/inst/examples/04_merge/app.R | 234 ++--- phuse-0.1.6/phuse/inst/examples/04_merge/metadata_example_loc.yml | 103 -- phuse-0.1.6/phuse/inst/examples/04_merge/metadata_example_rep.yml | 150 +-- phuse-0.1.6/phuse/man/build_inputs.Rd |only phuse-0.1.6/phuse/man/cvt_list2df.Rd | 2 phuse-0.1.6/phuse/man/start_phuse.Rd | 14 phuse-0.1.6/phuse/man/url.exists.Rd |only 21 files changed, 1121 insertions(+), 1012 deletions(-)