Title: Tools for Graphical Inference
Description: Tools for visual inference. Generate null data sets
and null plots using permutation and simulation. Calculate distance metrics
for a lineup, and examine the distributions of metrics.
Author: Hadley Wickham [aut, ctb],
Niladri Roy Chowdhury [aut, ctb],
Di Cook [aut, cre],
Heike Hofmann [aut, ctb]
Maintainer: Di Cook <dicook@monash.edu>
Diff between nullabor versions 0.3.1 dated 2014-12-17 and 0.3.5 dated 2018-09-23
nullabor-0.3.1/nullabor/R/lal.r |only nullabor-0.3.5/nullabor/DESCRIPTION | 29 nullabor-0.3.5/nullabor/MD5 | 105 ++- nullabor-0.3.5/nullabor/NAMESPACE | 30 nullabor-0.3.5/nullabor/NEWS.md |only nullabor-0.3.5/nullabor/R/data.r |only nullabor-0.3.5/nullabor/R/distances.r | 220 +++---- nullabor-0.3.5/nullabor/R/distmet.r | 52 + nullabor-0.3.5/nullabor/R/encryption.r | 8 nullabor-0.3.5/nullabor/R/method-dist.r | 41 + nullabor-0.3.5/nullabor/R/method-model.r | 29 nullabor-0.3.5/nullabor/R/method-permute.r | 9 nullabor-0.3.5/nullabor/R/method-ts.r |only nullabor-0.3.5/nullabor/R/opt_diff.r | 15 nullabor-0.3.5/nullabor/R/power.r |only nullabor-0.3.5/nullabor/R/protocols.r | 42 - nullabor-0.3.5/nullabor/R/pvalues.r |only nullabor-0.3.5/nullabor/README.md |only nullabor-0.3.5/nullabor/build/vignette.rds |binary nullabor-0.3.5/nullabor/data/aud.rda |only nullabor-0.3.5/nullabor/data/electoral.rda |only nullabor-0.3.5/nullabor/data/turk_results.rda |only nullabor-0.3.5/nullabor/data/wasps.rda |only nullabor-0.3.5/nullabor/inst/doc/distances.R |only nullabor-0.3.5/nullabor/inst/doc/distances.Rmd |only nullabor-0.3.5/nullabor/inst/doc/distances.html |only nullabor-0.3.5/nullabor/inst/doc/nullabor-examples.R |only nullabor-0.3.5/nullabor/inst/doc/nullabor-examples.Rmd |only nullabor-0.3.5/nullabor/inst/doc/nullabor-examples.html |only nullabor-0.3.5/nullabor/inst/doc/nullabor.R | 73 -- nullabor-0.3.5/nullabor/inst/doc/nullabor.Rmd | 185 +---- nullabor-0.3.5/nullabor/inst/doc/nullabor.html | 499 ++++++---------- nullabor-0.3.5/nullabor/man/add_true.Rd | 4 nullabor-0.3.5/nullabor/man/aud.Rd |only nullabor-0.3.5/nullabor/man/bin_dist.Rd | 4 nullabor-0.3.5/nullabor/man/box_dist.Rd | 22 nullabor-0.3.5/nullabor/man/calc_diff.Rd | 4 nullabor-0.3.5/nullabor/man/calc_mean_dist.Rd | 4 nullabor-0.3.5/nullabor/man/decrypt.Rd | 4 nullabor-0.3.5/nullabor/man/distmet.Rd | 19 nullabor-0.3.5/nullabor/man/distplot.Rd | 9 nullabor-0.3.5/nullabor/man/electoral.Rd |only nullabor-0.3.5/nullabor/man/figures |only nullabor-0.3.5/nullabor/man/find_plot_data.Rd | 4 nullabor-0.3.5/nullabor/man/lal.Rd | 4 nullabor-0.3.5/nullabor/man/lineup.Rd | 16 nullabor-0.3.5/nullabor/man/null_dist.Rd | 32 - nullabor-0.3.5/nullabor/man/null_gen.Rd | 4 nullabor-0.3.5/nullabor/man/null_lm.Rd | 12 nullabor-0.3.5/nullabor/man/null_permute.Rd | 14 nullabor-0.3.5/nullabor/man/null_ts.Rd |only nullabor-0.3.5/nullabor/man/opt_bin_diff.Rd | 7 nullabor-0.3.5/nullabor/man/pvisual.Rd |only nullabor-0.3.5/nullabor/man/reg_dist.Rd | 10 nullabor-0.3.5/nullabor/man/resid_boot.Rd | 4 nullabor-0.3.5/nullabor/man/resid_pboot.Rd | 4 nullabor-0.3.5/nullabor/man/resid_rotate.Rd | 4 nullabor-0.3.5/nullabor/man/resid_sigma.Rd | 6 nullabor-0.3.5/nullabor/man/rorschach.Rd | 4 nullabor-0.3.5/nullabor/man/sep_dist.Rd | 22 nullabor-0.3.5/nullabor/man/turk_results.Rd |only nullabor-0.3.5/nullabor/man/uni_dist.Rd | 4 nullabor-0.3.5/nullabor/man/visual_power.Rd |only nullabor-0.3.5/nullabor/man/wasps.Rd |only nullabor-0.3.5/nullabor/vignettes/distances.Rmd |only nullabor-0.3.5/nullabor/vignettes/nullabor-examples.Rmd |only nullabor-0.3.5/nullabor/vignettes/nullabor.Rmd | 185 +---- 67 files changed, 849 insertions(+), 894 deletions(-)
More information about DescribeDisplay at CRAN
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Title: Photobiological Calculations
Description: Definitions of classes, methods, operators and functions for use in
photobiology and radiation meteorology and climatology. Calculation of
effective (weighted) and not-weighted irradiances/doses, fluence rates,
transmittance, reflectance, absorptance, absorbance and diverse
ratios and other derived quantities from spectral data. Local maxima and
minima. Conversion between energy- and photon-based units. Wavelength
interpolation. Astronomical calculations related solar angles and day
length. Colours and vision. This package is part of the
'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] (<https://orcid.org/0000-0003-3385-972X>),
Titta K. Kotilainen [ctb] (<https://orcid.org/0000-0002-2822-9734>),
Glenn Davis [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiology versions 0.9.23 dated 2018-08-30 and 0.9.24 dated 2018-09-23
DESCRIPTION | 16 - MD5 | 98 +++++----- NAMESPACE | 10 + NEWS | 14 + R/copy.attr.R | 133 +++++--------- R/head-tail.R | 26 +- R/spct.classes.r | 76 +++----- R/spct.conversion.R | 2 R/spct.peaks.r | 351 +++++++++++++++++++++++++++++++++++++ build/vignette.rds |binary data/A.illuminant.spct.rda |binary data/D2-FEL-constants.rda |binary data/D65.illuminant.spct.rda |binary data/Ler-leaf-spct.rda |binary data/beesxyz.spct.rda |binary data/black_body.spct.rda |binary data/ccd.spct.rda |binary data/ciev10.spct.rda |binary data/ciev2.spct.rda |binary data/ciexyzCC10.spct.rda |binary data/ciexyzCC2.spct.rda |binary data/ciexyzCMF10.spct.rda |binary data/ciexyzCMF2.spct.rda |binary data/clear.spct.rda |binary data/clear_body.spct.rda |binary data/filter-cps-mspct.rda |binary data/green_leaf.spct.rda |binary data/opaque.spct.rda |binary data/photodiode.spct.rda |binary data/polyester.spct.rda |binary data/sun.daily.data.rda |binary data/sun.daily.spct.rda |binary data/sun.data.rda |binary data/sun.spct.rda |binary data/white-led-spct.rda |binary data/white_body.spct.rda |binary data/yellow.gel.rda |binary inst/doc/userguide1-intro.html | 6 inst/doc/userguide2-radiation.R | 9 inst/doc/userguide2-radiation.Rmd | 40 +++- inst/doc/userguide2-radiation.html | 286 +++++++++++++++++++----------- inst/doc/userguide3-astronomy.html | 30 +-- man/find_peaks.Rd | 3 man/find_wls.Rd |only man/get_peaks.Rd | 3 man/head_tail.Rd | 24 +- man/peaks.Rd | 3 man/setGenericSpct.Rd | 9 man/valleys.Rd | 3 man/wls_at_target.Rd |only vignettes/userguide2-radiation.Rmd | 40 +++- 51 files changed, 837 insertions(+), 345 deletions(-)
Title: An API for M-Estimation
Description: Provides a general, flexible framework for estimating parameters
and empirical sandwich variance estimator from a set of unbiased estimating
equations (i.e., M-estimation in the vein of Stefanski & Boos (2002)
<doi:10.1198/000313002753631330>). Also provides an API to compute finite-sample
variance corrections.
Author: Bradley Saul [aut, cre],
Brian Barkley [ctb]
Maintainer: Bradley Saul <bradleysaul@gmail.com>
Diff between geex versions 1.0.3 dated 2017-09-04 and 1.0.11 dated 2018-09-23
DESCRIPTION | 11 MD5 | 78 +-- NAMESPACE | 11 NEWS.md | 17 R/classes.R | 306 ++++++++++++- R/compute_funs.R | 54 ++ R/create_funs.R | 1 R/estimate_funs.R | 14 R/grab_funs.R | 61 ++ R/grab_psiFUN_funs.R | 70 +-- R/m_estimate.R | 2 build/vignette.rds |binary inst/doc/v00_geex_intro.html | 510 +++++++++++++++------- inst/doc/v01_additional_examples.html | 640 ++++++++++++++++++---------- inst/doc/v02_sandwich_comparison.html | 338 +++++++++++--- inst/doc/v03_root_solvers.html | 316 +++++++++++-- inst/doc/v04_weights.html | 366 ++++++++++++---- inst/doc/v05_finite_sample_corrections.html | 396 +++++++++++++---- inst/doc/v06_causal_example.R | 151 ++++++ inst/doc/v06_causal_example.Rmd | 233 +++++++++- inst/doc/v06_causal_example.html | 551 +++++++++++++++++++----- inst/doc/v07_geex_design.html | 437 +++++++++++++++---- man/coef-methods.Rd | 3 man/compute_pairwise_sum_of_list.Rd |only man/compute_sum_of_list.Rd |only man/create_basis.Rd | 1 man/geex_summary-class.Rd |only man/get_corrections-methods.Rd | 3 man/grab.Rd | 3 man/grab_design_levels.Rd |only man/grab_design_matrix.Rd | 4 man/grab_ee-methods.Rd |only man/grab_meat_list-methods.Rd | 4 man/grab_psiFUN.Rd | 4 man/nobs-methods.Rd |only man/roots-methods.Rd | 4 man/sandwich_components-class.Rd | 2 man/show-methods.Rd | 20 man/summary-methods.Rd |only man/vcov-methods.Rd | 4 man/weights-methods.Rd |only tests/testthat/test_geex.R | 17 tests/testthat/test_grab_eeFUN_glm.R | 74 ++- vignettes/v06_causal_example.Rmd | 233 +++++++++- 44 files changed, 3966 insertions(+), 973 deletions(-)
Title: Facilities for Simulating from ODE-Based Models
Description: Facilities for running simulations from ordinary
differential equation (ODE) models, such as pharmacometrics and other
compartmental models. A compilation manager translates the ODE model
into C, compiles it, and dynamically loads the object code into R for
improved computational efficiency. An event table object facilitates
the specification of complex dosing regimens (optional) and sampling
schedules. NB: The use of this package requires both C and
Fortran compilers, for details on their use with R please see
Section 6.3, Appendix A, and Appendix D in the "R Administration and
Installation" manual. Also the code is mostly released under GPL. The
VODE and LSODA are in the public domain. The information is available
in the inst/COPYRIGHTS.
Author: Matthew L. Fidler [aut],
Melissa Hallow [aut],
Wenping Wang [aut, cre],
Zufar Mulyukov [ctb],
Justin Wilkins [ctb],
Simon Frost [ctb],
Heng Li [ctb],
Yu Feng [ctb],
Alan Hindmarsh [ctb],
Linda Petzold [ctb],
Ernst Hairer [ctb],
Gerhard Wanner [ctb],
Johannes Pfeifer [ctb],
Robert B. Schnabel [ctb],
Elizabeth Eskow [ctb],
J Colinge [ctb],
Hadley Wickham [ctb],
G Grothendieck [ctb],
Robert Gentleman [ctb],
Ross Ihaka [ctb],
R core team [cph],
odepack authors [cph]
Maintainer: Wenping Wang <wwang8198@gmail.com>
Diff between RxODE versions 0.7.2-5 dated 2018-06-19 and 0.8.0-7 dated 2018-09-23
RxODE-0.7.2-5/RxODE/man/rxLogifyModel.Rd |only RxODE-0.7.2-5/RxODE/man/rxSymDiag.Rd |only RxODE-0.7.2-5/RxODE/man/rxSymInv.Rd |only RxODE-0.7.2-5/RxODE/man/rxSymInvCreate.Rd |only RxODE-0.7.2-5/RxODE/src/errmsg.f |only RxODE-0.7.2-5/RxODE/src/solve.h |only RxODE-0.7.2-5/RxODE/tests/testthat/test-symbolic-inverse.R |only RxODE-0.8.0-7/RxODE/DESCRIPTION | 19 RxODE-0.8.0-7/RxODE/MD5 | 356 RxODE-0.8.0-7/RxODE/NAMESPACE | 361 RxODE-0.8.0-7/RxODE/R/RcppExports.R | 88 RxODE-0.8.0-7/RxODE/R/RxODE-win-setup.R | 15 RxODE-0.8.0-7/RxODE/R/RxODE.R | 4 RxODE-0.8.0-7/RxODE/R/RxODE_md5.R | 2 RxODE-0.8.0-7/RxODE/R/dsl.R | 385 RxODE-0.8.0-7/RxODE/R/focei2.R |only RxODE-0.8.0-7/RxODE/R/genShinyApp.template.R | 10 RxODE-0.8.0-7/RxODE/R/progress.R |only RxODE-0.8.0-7/RxODE/R/rxOptExpr.R |only RxODE-0.8.0-7/RxODE/R/rxSymInv.R | 555 RxODE-0.8.0-7/RxODE/R/rxode-options.R | 8 RxODE-0.8.0-7/RxODE/R/rxsolve.R | 53 RxODE-0.8.0-7/RxODE/R/rxsympy.R | 859 RxODE-0.8.0-7/RxODE/R/utils.R | 37 RxODE-0.8.0-7/RxODE/build/refresh.R | 3 RxODE-0.8.0-7/RxODE/build/vignette.rds |binary RxODE-0.8.0-7/RxODE/inst/doc/RxODE-covariates.R | 132 RxODE-0.8.0-7/RxODE/inst/doc/RxODE-covariates.html | 1248 - RxODE-0.8.0-7/RxODE/inst/doc/RxODE-data-frame.R | 146 RxODE-0.8.0-7/RxODE/inst/doc/RxODE-data-frame.html | 2945 +-- RxODE-0.8.0-7/RxODE/inst/doc/RxODE-events.html | 267 RxODE-0.8.0-7/RxODE/inst/doc/RxODE-intro.R | 126 RxODE-0.8.0-7/RxODE/inst/doc/RxODE-intro.html | 1395 - RxODE-0.8.0-7/RxODE/inst/doc/RxODE-mix-lin-ode.R | 160 RxODE-0.8.0-7/RxODE/inst/doc/RxODE-mix-lin-ode.html | 1582 - RxODE-0.8.0-7/RxODE/inst/doc/RxODE-shiny.R | 14 RxODE-0.8.0-7/RxODE/inst/doc/RxODE-shiny.html | 267 RxODE-0.8.0-7/RxODE/inst/doc/RxODE-sim-var.R | 412 RxODE-0.8.0-7/RxODE/inst/doc/RxODE-sim-var.html |10682 +++-------- RxODE-0.8.0-7/RxODE/inst/doc/RxODE-stiff.R | 70 RxODE-0.8.0-7/RxODE/inst/doc/RxODE-stiff.html | 893 RxODE-0.8.0-7/RxODE/inst/doc/RxODE-syntax.R | 14 RxODE-0.8.0-7/RxODE/inst/doc/RxODE-syntax.html | 468 RxODE-0.8.0-7/RxODE/inst/doc/RxODE-transit-compartments.R | 118 RxODE-0.8.0-7/RxODE/inst/doc/RxODE-transit-compartments.html | 425 RxODE-0.8.0-7/RxODE/inst/include/RxODE.h |only RxODE-0.8.0-7/RxODE/inst/ode.c | 260 RxODE-0.8.0-7/RxODE/man/RxODE.Rd | 634 RxODE-0.8.0-7/RxODE/man/add.dosing.Rd | 107 RxODE-0.8.0-7/RxODE/man/add.sampling.Rd | 66 RxODE-0.8.0-7/RxODE/man/cholSE.Rd |only RxODE-0.8.0-7/RxODE/man/coef.RxODE.Rd | 76 RxODE-0.8.0-7/RxODE/man/coxBox.Rd |only RxODE-0.8.0-7/RxODE/man/cvPost.Rd | 66 RxODE-0.8.0-7/RxODE/man/dot-rxRmIni.Rd |only RxODE-0.8.0-7/RxODE/man/dot-rxRmJac.Rd |only RxODE-0.8.0-7/RxODE/man/dot-rxRmPrint.Rd |only RxODE-0.8.0-7/RxODE/man/dot-rxRmSens.Rd |only RxODE-0.8.0-7/RxODE/man/dot-rxRtoolsBaseWin.Rd |only RxODE-0.8.0-7/RxODE/man/dot-rxSymPyJacobian.Rd |only RxODE-0.8.0-7/RxODE/man/dot-rxWinRtoolsPath.Rd |only RxODE-0.8.0-7/RxODE/man/eventTable.Rd | 333 RxODE-0.8.0-7/RxODE/man/findLhs.Rd | 42 RxODE-0.8.0-7/RxODE/man/foceiFitCpp_.Rd |only RxODE-0.8.0-7/RxODE/man/genShinyApp.template.Rd | 157 RxODE-0.8.0-7/RxODE/man/is.rxSolve.Rd | 40 RxODE-0.8.0-7/RxODE/man/plus-.rxSolve.Rd | 46 RxODE-0.8.0-7/RxODE/man/print.RxODE.Rd | 38 RxODE-0.8.0-7/RxODE/man/print.rxCoef.Rd | 36 RxODE-0.8.0-7/RxODE/man/print.rxCoefSolve.Rd | 40 RxODE-0.8.0-7/RxODE/man/print.rxDll.Rd | 30 RxODE-0.8.0-7/RxODE/man/reexports.Rd | 32 RxODE-0.8.0-7/RxODE/man/rinvchisq.Rd | 44 RxODE-0.8.0-7/RxODE/man/rxAddReturn.Rd | 44 RxODE-0.8.0-7/RxODE/man/rxAssignPtr.Rd | 28 RxODE-0.8.0-7/RxODE/man/rxBlockZeros.Rd | 42 RxODE-0.8.0-7/RxODE/man/rxC.Rd | 46 RxODE-0.8.0-7/RxODE/man/rxCat.Rd | 36 RxODE-0.8.0-7/RxODE/man/rxChain.Rd | 52 RxODE-0.8.0-7/RxODE/man/rxChain2.Rd | 52 RxODE-0.8.0-7/RxODE/man/rxClean.Rd | 46 RxODE-0.8.0-7/RxODE/man/rxCompile.Rd | 198 RxODE-0.8.0-7/RxODE/man/rxCondition.Rd | 54 RxODE-0.8.0-7/RxODE/man/rxCores.Rd | 22 RxODE-0.8.0-7/RxODE/man/rxDelete.Rd | 42 RxODE-0.8.0-7/RxODE/man/rxDfdy.Rd | 42 RxODE-0.8.0-7/RxODE/man/rxDll.Rd | 48 RxODE-0.8.0-7/RxODE/man/rxDynLoad.Rd | 48 RxODE-0.8.0-7/RxODE/man/rxDynUnload.Rd | 48 RxODE-0.8.0-7/RxODE/man/rxExpandIfElse.Rd | 68 RxODE-0.8.0-7/RxODE/man/rxFoExpandEta.Rd |only RxODE-0.8.0-7/RxODE/man/rxForget.Rd | 30 RxODE-0.8.0-7/RxODE/man/rxGetModel.Rd | 62 RxODE-0.8.0-7/RxODE/man/rxGetRxODE.Rd | 28 RxODE-0.8.0-7/RxODE/man/rxHtml.Rd | 44 RxODE-0.8.0-7/RxODE/man/rxInits.Rd | 68 RxODE-0.8.0-7/RxODE/man/rxInv.Rd | 34 RxODE-0.8.0-7/RxODE/man/rxIs.Rd | 54 RxODE-0.8.0-7/RxODE/man/rxIsCurrent.Rd | 34 RxODE-0.8.0-7/RxODE/man/rxIsLoaded.Rd | 48 RxODE-0.8.0-7/RxODE/man/rxLhs.Rd | 46 RxODE-0.8.0-7/RxODE/man/rxLinCmtTrans.Rd | 42 RxODE-0.8.0-7/RxODE/man/rxMd5.Rd | 116 RxODE-0.8.0-7/RxODE/man/rxModelVars.Rd | 74 RxODE-0.8.0-7/RxODE/man/rxModels_.Rd | 30 RxODE-0.8.0-7/RxODE/man/rxNorm.Rd | 64 RxODE-0.8.0-7/RxODE/man/rxOptExpr.Rd |only RxODE-0.8.0-7/RxODE/man/rxOptions.Rd | 85 RxODE-0.8.0-7/RxODE/man/rxParams.Rd | 58 RxODE-0.8.0-7/RxODE/man/rxParseErr.Rd | 57 RxODE-0.8.0-7/RxODE/man/rxParsePk.Rd | 46 RxODE-0.8.0-7/RxODE/man/rxParsePred.Rd | 46 RxODE-0.8.0-7/RxODE/man/rxPermissive.Rd | 76 RxODE-0.8.0-7/RxODE/man/rxPhysicalDrives.Rd | 48 RxODE-0.8.0-7/RxODE/man/rxPrint.Rd | 52 RxODE-0.8.0-7/RxODE/man/rxProgress.Rd |only RxODE-0.8.0-7/RxODE/man/rxReload.Rd | 30 RxODE-0.8.0-7/RxODE/man/rxReq.Rd | 42 RxODE-0.8.0-7/RxODE/man/rxSetProd.Rd | 54 RxODE-0.8.0-7/RxODE/man/rxSetSum.Rd | 64 RxODE-0.8.0-7/RxODE/man/rxSetupIni.Rd | 40 RxODE-0.8.0-7/RxODE/man/rxSetupScale.Rd | 44 RxODE-0.8.0-7/RxODE/man/rxShiny.Rd | 92 RxODE-0.8.0-7/RxODE/man/rxSimThetaOmega.Rd | 154 RxODE-0.8.0-7/RxODE/man/rxSolve.Rd | 669 RxODE-0.8.0-7/RxODE/man/rxSolveFree.Rd | 24 RxODE-0.8.0-7/RxODE/man/rxSplitLines.Rd | 84 RxODE-0.8.0-7/RxODE/man/rxSplitPlusQ.Rd | 68 RxODE-0.8.0-7/RxODE/man/rxState.Rd | 56 RxODE-0.8.0-7/RxODE/man/rxSumProdModel.Rd | 57 RxODE-0.8.0-7/RxODE/man/rxSyPyAddVars.Rd | 42 RxODE-0.8.0-7/RxODE/man/rxSymInvChol.Rd | 96 RxODE-0.8.0-7/RxODE/man/rxSymInvCholCreate.Rd | 56 RxODE-0.8.0-7/RxODE/man/rxSymInvCholN.Rd | 24 RxODE-0.8.0-7/RxODE/man/rxSymPy.Rd | 42 RxODE-0.8.0-7/RxODE/man/rxSymPyClean.Rd | 30 RxODE-0.8.0-7/RxODE/man/rxSymPyClear.Rd | 36 RxODE-0.8.0-7/RxODE/man/rxSymPyDfDy.Rd | 68 RxODE-0.8.0-7/RxODE/man/rxSymPyExec.Rd | 52 RxODE-0.8.0-7/RxODE/man/rxSymPyExists.Rd | 42 RxODE-0.8.0-7/RxODE/man/rxSymPyExpand.Rd | 46 RxODE-0.8.0-7/RxODE/man/rxSymPyFix.Rd | 40 RxODE-0.8.0-7/RxODE/man/rxSymPyFunctions.Rd | 36 RxODE-0.8.0-7/RxODE/man/rxSymPyReserved.Rd | 36 RxODE-0.8.0-7/RxODE/man/rxSymPySensitivity.Rd | 68 RxODE-0.8.0-7/RxODE/man/rxSymPySetup.Rd | 48 RxODE-0.8.0-7/RxODE/man/rxSymPySetupIf.Rd | 42 RxODE-0.8.0-7/RxODE/man/rxSymPySetupPred.Rd | 123 RxODE-0.8.0-7/RxODE/man/rxSymPyStart.Rd | 30 RxODE-0.8.0-7/RxODE/man/rxSymPyVars.Rd | 36 RxODE-0.8.0-7/RxODE/man/rxSymPyVersion.Rd | 42 RxODE-0.8.0-7/RxODE/man/rxSyncOptions.Rd | 30 RxODE-0.8.0-7/RxODE/man/rxThetaEta.Rd | 46 RxODE-0.8.0-7/RxODE/man/rxToSymPy.Rd | 52 RxODE-0.8.0-7/RxODE/man/rxTrans.Rd | 172 RxODE-0.8.0-7/RxODE/man/rxValidate.Rd | 44 RxODE-0.8.0-7/RxODE/man/rxVersion.Rd | 52 RxODE-0.8.0-7/RxODE/man/rxWinPythonSetup.Rd | 28 RxODE-0.8.0-7/RxODE/man/rxWinSetup.Rd | 38 RxODE-0.8.0-7/RxODE/man/sqrtm.Rd |only RxODE-0.8.0-7/RxODE/man/summary.RxODE.Rd | 38 RxODE-0.8.0-7/RxODE/man/summary.rxDll.Rd | 44 RxODE-0.8.0-7/RxODE/man/yeoJohnson.Rd |only RxODE-0.8.0-7/RxODE/src/Makevars.in | 17 RxODE-0.8.0-7/RxODE/src/RcppExports.cpp | 225 RxODE-0.8.0-7/RxODE/src/RxODE.h |only RxODE-0.8.0-7/RxODE/src/box.c |only RxODE-0.8.0-7/RxODE/src/call_dvode.c | 2 RxODE-0.8.0-7/RxODE/src/dlsoda.f | 4 RxODE-0.8.0-7/RxODE/src/init.c | 107 RxODE-0.8.0-7/RxODE/src/inner.cpp | 3174 +++ RxODE-0.8.0-7/RxODE/src/lbfgsR.c |only RxODE-0.8.0-7/RxODE/src/lincmt.c |only RxODE-0.8.0-7/RxODE/src/ode.h | 16 RxODE-0.8.0-7/RxODE/src/omegaChol.c | 4078 ++-- RxODE-0.8.0-7/RxODE/src/opkda2.f | 102 RxODE-0.8.0-7/RxODE/src/par_solve.c | 623 RxODE-0.8.0-7/RxODE/src/rxData.cpp | 563 RxODE-0.8.0-7/RxODE/src/rxInv.cpp | 112 RxODE-0.8.0-7/RxODE/src/tran.c | 47 RxODE-0.8.0-7/RxODE/tests/testthat/test-backward.R | 4 RxODE-0.8.0-7/RxODE/tests/testthat/test-cov.R | 1 RxODE-0.8.0-7/RxODE/tests/testthat/test-dfdy.R | 9 RxODE-0.8.0-7/RxODE/tests/testthat/test-dplyr.R | 6 RxODE-0.8.0-7/RxODE/tests/testthat/test-dsl.R | 12 RxODE-0.8.0-7/RxODE/tests/testthat/test-focei-long-lines.R | 2 RxODE-0.8.0-7/RxODE/tests/testthat/test-focei-sens.R | 121 RxODE-0.8.0-7/RxODE/tests/testthat/test-focei-setup.R | 59 RxODE-0.8.0-7/RxODE/tests/testthat/test-ifelse.R | 68 RxODE-0.8.0-7/RxODE/tests/testthat/test-ini.R | 26 RxODE-0.8.0-7/RxODE/tests/testthat/test-issue-50.R |only RxODE-0.8.0-7/RxODE/tests/testthat/test-lhs-ifelse.R |only RxODE-0.8.0-7/RxODE/tests/testthat/test-omega-chol.R | 4 RxODE-0.8.0-7/RxODE/tests/testthat/test-theta-eta.R | 4 RxODE-0.8.0-7/RxODE/tests/testthat/test-transit.R | 5 195 files changed, 19392 insertions(+), 21380 deletions(-)
Title: Data and Source Code From: Nitrogen Uptake and Allocation
Estimates for Spartina Alterniflora and Distichlis Spicata
Description: Contains data, code, and figures from Hill et al. (2018; Journal of Experimental Marine Biology and Ecology; <DOI: 10.1016/j.jembe.2018.07.006>) and Hill et al. (submitted; Data In Brief). Datasets document plant allometry, stem heights, nutrient and stable isotope content, and sediment denitrification enzyme assays. The data and analysis offer an examination of nitrogen uptake and allocation in two salt marsh plant species.
Author: Troy D. Hill, Nathalie R. Sommer, Caroline R. Kanaskie, Emily A. Santos, and Autumn J. Oczkowski
Maintainer: Troy D. Hill <Hill.Troy@gmail.com>
Diff between NitrogenUptake2016 versions 0.2.0 dated 2018-07-30 and 0.2.2 dated 2018-09-23
NitrogenUptake2016-0.2.0/NitrogenUptake2016/inst/doc/DataInBrief.html |only NitrogenUptake2016-0.2.0/NitrogenUptake2016/inst/doc/JEMBE.html |only NitrogenUptake2016-0.2.0/NitrogenUptake2016/vignettes/Hill_etal_2018_20170916.R |only NitrogenUptake2016-0.2.0/NitrogenUptake2016/vignettes/Hill_etal_2018_20180524.R |only NitrogenUptake2016-0.2.2/NitrogenUptake2016/DESCRIPTION | 10 - NitrogenUptake2016-0.2.2/NitrogenUptake2016/MD5 | 31 +-- NitrogenUptake2016-0.2.2/NitrogenUptake2016/NEWS |only NitrogenUptake2016-0.2.2/NitrogenUptake2016/README.md | 18 + NitrogenUptake2016-0.2.2/NitrogenUptake2016/build/vignette.rds |binary NitrogenUptake2016-0.2.2/NitrogenUptake2016/inst/CITATION | 2 NitrogenUptake2016-0.2.2/NitrogenUptake2016/inst/doc/DataInBrief.Rmd | 16 + NitrogenUptake2016-0.2.2/NitrogenUptake2016/inst/doc/DataInBrief.pdf |only NitrogenUptake2016-0.2.2/NitrogenUptake2016/inst/doc/JEMBE.R | 6 NitrogenUptake2016-0.2.2/NitrogenUptake2016/inst/doc/JEMBE.Rmd | 92 +++++----- NitrogenUptake2016-0.2.2/NitrogenUptake2016/inst/doc/JEMBE.pdf |only NitrogenUptake2016-0.2.2/NitrogenUptake2016/man/bCM.Rd | 5 NitrogenUptake2016-0.2.2/NitrogenUptake2016/man/nappCalc2.Rd | 8 NitrogenUptake2016-0.2.2/NitrogenUptake2016/vignettes/DataInBrief.Rmd | 16 + NitrogenUptake2016-0.2.2/NitrogenUptake2016/vignettes/DataInBrief.html |only NitrogenUptake2016-0.2.2/NitrogenUptake2016/vignettes/JEMBE.Rmd | 92 +++++----- NitrogenUptake2016-0.2.2/NitrogenUptake2016/vignettes/JEMBE.html |only 21 files changed, 178 insertions(+), 118 deletions(-)
More information about NitrogenUptake2016 at CRAN
Permanent link
Title: General Purpose Hierarchical Data Structure
Description: Create tree structures from hierarchical data, and traverse the
tree in various orders. Aggregate, cumulate, print, plot, convert to and from
data.frame and more. Useful for decision trees, machine learning, finance,
conversion from and to JSON, and many other applications.
Author: Chris Hammil [ctb] (improve getting),
Facundo Munoz [ctb] (improve list conversion),
Markus Wamser [ctb] (fixed some typos),
Pierre Formont [ctb] (additional features),
Kent Russel [ctb] (documentation),
Noam Ross [ctb] (fixes),
Duncan Garmonsway [ctb] (fixes),
Christoph Glur [aut, cre] (R interface)
Maintainer: Christoph Glur <christoph.glur@ipub.com>
Diff between data.tree versions 0.7.6 dated 2018-06-16 and 0.7.7 dated 2018-09-23
DESCRIPTION | 19 ++++++++++----- MD5 | 50 ++++++++++++++++++++-------------------- NAMESPACE | 11 ++++++++ NEWS | 4 +++ R/node.R | 2 - R/node_methods_traversal.R | 8 +++++- inst/doc/applications.html | 56 ++++++++++++++++++++++----------------------- inst/doc/data.tree.R | 28 +++++++++++----------- inst/doc/data.tree.Rmd | 28 +++++++++++----------- inst/doc/data.tree.html | 46 ++++++++++++++++++------------------ man/CreateRegularTree.Rd | 3 +- man/GetPhyloNr.Rd | 1 man/ToDiagrammeRGraph.Rd | 3 +- man/ToNewick.Rd | 1 man/Traverse.Rd | 4 +-- man/as.Node.Rd | 1 man/as.Node.data.frame.Rd | 1 man/as.Node.dendrogram.Rd | 6 +++- man/as.Node.list.Rd | 12 +++++---- man/as.Node.phylo.Rd | 2 + man/as.data.frame.Node.Rd | 9 ++++--- man/as.dendrogram.Node.Rd | 1 man/as.igraph.Node.Rd | 4 +-- man/as.list.Node.Rd | 10 ++++---- man/as.phylo.Node.Rd | 1 vignettes/data.tree.Rmd | 28 +++++++++++----------- 26 files changed, 191 insertions(+), 148 deletions(-)
Title: Nonlinear Mixed Effects Models in Population Pharmacokinetics
and Pharmacodynamics
Description: Fit and compare nonlinear mixed-effects models in differential
equations with flexible dosing information commonly seen in pharmacokinetics
and pharmacodynamics (Almquist, Leander, and Jirstrand 2015
<doi:10.1007/s10928-015-9409-1>). Differential equation solving is
by compiled C code provided in the 'RxODE' package
(Wang, Hallow, and James 2015 <doi:10.1002/psp4.12052>).
Author: Matthew Fidler [aut],
Yuan Xiong [aut],
Rik Schoemaker [aut],
Justin Wilkins [aut],
Mirjam Trame [aut],
Teun Post [aut],
Robert Leary [ctb],
Wenping Wang [aut, cre],
Hadley Wickham [ctb],
Dirk Eddelbuettel [cph],
David Ardia [cph],
Katharine Mullen [cph]
Maintainer: Wenping Wang <wwang8198@gmail.com>
Diff between nlmixr versions 0.9.1-3 dated 2018-06-21 and 1.0.0-7 dated 2018-09-23
nlmixr-0.9.1-3/nlmixr/R/focei.R |only nlmixr-0.9.1-3/nlmixr/R/focei_fit.R |only nlmixr-0.9.1-3/nlmixr/R/resid.R |only nlmixr-0.9.1-3/nlmixr/man/RxODE_focei_eta.Rd |only nlmixr-0.9.1-3/nlmixr/man/RxODE_focei_eta_lik.Rd |only nlmixr-0.9.1-3/nlmixr/man/RxODE_focei_eta_lp.Rd |only nlmixr-0.9.1-3/nlmixr/man/RxODE_focei_finalize_llik.Rd |only nlmixr-0.9.1-3/nlmixr/man/as.data.frame.focei.fit.Rd |only nlmixr-0.9.1-3/nlmixr/man/fitted.focei.fit.Rd |only nlmixr-0.9.1-3/nlmixr/man/focei.fit.Rd |only nlmixr-0.9.1-3/nlmixr/man/logLik.focei.fit.Rd |only nlmixr-0.9.1-3/nlmixr/man/nobs.focei.fit.Rd |only nlmixr-0.9.1-3/nlmixr/man/par.hist.Rd |only nlmixr-0.9.1-3/nlmixr/man/plot.focei.fit.Rd |only nlmixr-0.9.1-3/nlmixr/man/print.focei.fit.Rd |only nlmixr-0.9.1-3/nlmixr/man/residuals.focei.fit.Rd |only nlmixr-0.9.1-3/nlmixr/man/rxFoceiEta.Rd |only nlmixr-0.9.1-3/nlmixr/man/rxFoceiGrad.Rd |only nlmixr-0.9.1-3/nlmixr/man/rxFoceiInner.Rd |only nlmixr-0.9.1-3/nlmixr/man/rxFoceiLik.Rd |only nlmixr-0.9.1-3/nlmixr/man/rxFoceiLp.Rd |only nlmixr-0.9.1-3/nlmixr/man/rxFoceiTheta.Rd |only nlmixr-0.9.1-3/nlmixr/man/rxGrad.Rd |only nlmixr-0.9.1-3/nlmixr/man/rxHessian.Rd |only nlmixr-0.9.1-3/nlmixr/man/rxUpdateEtas.Rd |only nlmixr-0.9.1-3/nlmixr/man/vcov.focei.fit.Rd |only nlmixr-0.9.1-3/nlmixr/src/RxODE.c |only nlmixr-0.9.1-3/nlmixr/src/focei.cpp |only nlmixr-0.9.1-3/nlmixr/src/focei_fit.cpp |only nlmixr-1.0.0-7/nlmixr/DESCRIPTION | 12 nlmixr-1.0.0-7/nlmixr/MD5 | 153 +- nlmixr-1.0.0-7/nlmixr/NAMESPACE | 100 - nlmixr-1.0.0-7/nlmixr/R/RcppExports.R | 110 - nlmixr-1.0.0-7/nlmixr/R/bounds.R | 9 nlmixr-1.0.0-7/nlmixr/R/dataConvert.R | 4 nlmixr-1.0.0-7/nlmixr/R/foceiFit.R |only nlmixr-1.0.0-7/nlmixr/R/nlme_fit.R | 175 +- nlmixr-1.0.0-7/nlmixr/R/nlmixr.R | 535 +++++-- nlmixr-1.0.0-7/nlmixr/R/npde.R |only nlmixr-1.0.0-7/nlmixr/R/reexports.R | 17 nlmixr-1.0.0-7/nlmixr/R/saem_fit.R | 489 ++++--- nlmixr-1.0.0-7/nlmixr/R/saem_fit_aux.R |only nlmixr-1.0.0-7/nlmixr/R/simulate.R | 224 ++- nlmixr-1.0.0-7/nlmixr/R/ui.R | 833 +++++++++--- nlmixr-1.0.0-7/nlmixr/R/vpc.saemFit.R | 18 nlmixr-1.0.0-7/nlmixr/R/vpc.ui.R | 152 +- nlmixr-1.0.0-7/nlmixr/build/install.R | 16 nlmixr-1.0.0-7/nlmixr/build/nsis.R | 14 nlmixr-1.0.0-7/nlmixr/build/test_install.R | 13 nlmixr-1.0.0-7/nlmixr/build/vignette.rds |binary nlmixr-1.0.0-7/nlmixr/inst/doc/running_nlmixr.R | 2 nlmixr-1.0.0-7/nlmixr/inst/doc/running_nlmixr.Rmd | 2 nlmixr-1.0.0-7/nlmixr/inst/doc/running_nlmixr.html | 118 + nlmixr-1.0.0-7/nlmixr/inst/include/neldermead.hpp | 5 nlmixr-1.0.0-7/nlmixr/inst/include/saem_class_rcpp.hpp | 296 +++- nlmixr-1.0.0-7/nlmixr/man/addCwres.Rd |only nlmixr-1.0.0-7/nlmixr/man/addNpde.Rd |only nlmixr-1.0.0-7/nlmixr/man/as.focei.Rd | 10 nlmixr-1.0.0-7/nlmixr/man/as.nlme.Rd | 4 nlmixr-1.0.0-7/nlmixr/man/as.saem.Rd | 2 nlmixr-1.0.0-7/nlmixr/man/configsaem.Rd | 10 nlmixr-1.0.0-7/nlmixr/man/constructLinCmt.Rd | 2 nlmixr-1.0.0-7/nlmixr/man/dot-collectWarnings.Rd |only nlmixr-1.0.0-7/nlmixr/man/dynmodel.Rd | 4 nlmixr-1.0.0-7/nlmixr/man/focei.eta.Rd | 2 nlmixr-1.0.0-7/nlmixr/man/focei.theta.Rd | 2 nlmixr-1.0.0-7/nlmixr/man/foceiControl.Rd |only nlmixr-1.0.0-7/nlmixr/man/foceiFit.Rd |only nlmixr-1.0.0-7/nlmixr/man/gen_saem_user_fn.Rd | 4 nlmixr-1.0.0-7/nlmixr/man/ini.Rd |only nlmixr-1.0.0-7/nlmixr/man/lincmt.Rd | 3 nlmixr-1.0.0-7/nlmixr/man/model.Rd |only nlmixr-1.0.0-7/nlmixr/man/nlme_lin_cmpt.Rd | 12 nlmixr-1.0.0-7/nlmixr/man/nlme_ode.Rd | 16 nlmixr-1.0.0-7/nlmixr/man/nlmixr.Rd | 28 nlmixr-1.0.0-7/nlmixr/man/nlmixrAugPred.Rd | 13 nlmixr-1.0.0-7/nlmixr/man/nlmixrBounds.focei.upper.lower.Rd | 3 nlmixr-1.0.0-7/nlmixr/man/nlmixrPred.Rd | 244 --- nlmixr-1.0.0-7/nlmixr/man/nlmixrSim.Rd | 53 nlmixr-1.0.0-7/nlmixr/man/nlmixrUI.focei.fixed.Rd |only nlmixr-1.0.0-7/nlmixr/man/nlmixrUI.focei.inits.Rd | 6 nlmixr-1.0.0-7/nlmixr/man/nlmixrUI.saem.distribution.Rd |only nlmixr-1.0.0-7/nlmixr/man/nlmixrUI.saem.fixed.Rd |only nlmixr-1.0.0-7/nlmixr/man/nlmixr_fit.Rd | 12 nlmixr-1.0.0-7/nlmixr/man/plot.nlmixrFitData.Rd |only nlmixr-1.0.0-7/nlmixr/man/plot.saemFit.Rd | 2 nlmixr-1.0.0-7/nlmixr/man/reexports.Rd | 46 nlmixr-1.0.0-7/nlmixr/man/residuals.nlmixrFitData.Rd |only nlmixr-1.0.0-7/nlmixr/man/saem.fit.Rd | 50 nlmixr-1.0.0-7/nlmixr/man/saemControl.Rd | 33 nlmixr-1.0.0-7/nlmixr/man/tableControl.Rd |only nlmixr-1.0.0-7/nlmixr/man/traceplot.Rd | 6 nlmixr-1.0.0-7/nlmixr/man/vpc_ui.Rd | 37 nlmixr-1.0.0-7/nlmixr/src/Makevars | 6 nlmixr-1.0.0-7/nlmixr/src/RcppExports.cpp | 193 -- nlmixr-1.0.0-7/nlmixr/src/chkSolved.c | 39 nlmixr-1.0.0-7/nlmixr/src/init.c | 42 nlmixr-1.0.0-7/nlmixr/src/resid.cpp | 495 +++++-- nlmixr-1.0.0-7/nlmixr/tests/testthat/test-ui-pred-err.R | 43 nlmixr-1.0.0-7/nlmixr/vignettes/running_nlmixr.Rmd | 2 100 files changed, 2885 insertions(+), 1836 deletions(-)
Title: Analysis and Presentation of Social Scientific Data
Description: This is a collection of tools that the author (Jacob) has written
for the purpose of more efficiently understanding and sharing the results of
(primarily) regression analyses. There are a number of functions focused
specifically on the interpretation and presentation of interactions.
Just about everything supports models from the survey package.
Author: Jacob A. Long [aut, cre] (<https://orcid.org/0000-0002-1582-6214>)
Maintainer: Jacob A. Long <long.1377@osu.edu>
Diff between jtools versions 1.1.0 dated 2018-08-16 and 1.1.1 dated 2018-09-23
DESCRIPTION | 16 MD5 | 154 NAMESPACE | 390 + NEWS.md | 1479 +++--- R/export_summ.R | 2195 ++++----- R/int_utils.R | 2435 +++++----- R/internal.R | 2821 ++++++------ R/plot_predictions.R | 1708 +++---- R/simple_slopes.R | 2396 +++++----- R/summ.R | 4959 ++++++++++------------ R/summ_rq.R | 824 +-- README.md | 1460 +++--- build/vignette.rds |binary inst/CITATION | 20 inst/doc/categorical.R | 105 inst/doc/categorical.Rmd | 275 - inst/doc/categorical.html | 1384 +++--- inst/doc/interactions.R | 361 - inst/doc/interactions.Rmd | 1305 ++--- inst/doc/interactions.html | 4644 +++++++++++--------- inst/doc/summ.R | 279 - inst/doc/summ.Rmd | 1145 ++--- inst/doc/summ.html | 3095 ++++++++----- inst/doc/svycor.R | 100 inst/doc/svycor.Rmd | 276 - inst/doc/svycor.html | 786 +-- man/as_huxtable.sim_slopes.Rd | 76 man/cat_plot.Rd | 586 +- man/center.Rd | 108 man/center_mod.Rd | 220 man/effect_plot.Rd | 408 - man/export_summs.Rd | 316 - man/figures/interact_plot_continuous-1.png |binary man/figures/interact_plot_continuous_points-1.png |binary man/figures/interact_plot_factor-1.png |binary man/figures/j-n-plot-1.png |binary man/figures/unnamed-chunk-7-1.png |binary man/figures/unnamed-chunk-8-1.png |binary man/glance.summ.Rd | 102 man/gridlines.Rd | 74 man/gscale.Rd | 330 - man/interact_plot.Rd | 674 +- man/j_summ.Rd | 58 man/johnson_neyman.Rd | 314 - man/jtools_colors.Rd | 106 man/knit_print.summ.Rd | 62 man/make_predictions.Rd | 330 - man/make_predictions.brmsfit.Rd | 252 - man/make_predictions.merMod.Rd | 324 - man/make_predictions.rq.Rd | 268 - man/make_predictions.stanreg.Rd | 254 - man/pf_sv_test.Rd | 140 man/plot.sim_slopes.Rd | 34 man/plot_predictions.Rd | 486 +- man/plot_summs.Rd | 270 - man/probe_interaction.Rd | 186 man/scale_mod.Rd | 266 - man/set_summ_defaults.Rd | 124 man/sim_slopes.Rd | 410 - man/standardize.Rd | 110 man/summ.Rd | 58 man/summ.glm.Rd | 334 - man/summ.lm.Rd | 404 - man/summ.merMod.Rd | 509 +- man/summ.rq.Rd | 228 - man/summ.svyglm.Rd | 256 - man/svycor.Rd | 222 man/svysd.Rd | 122 man/theme_apa.Rd | 202 man/weights_tests.Rd | 166 man/wgttest.Rd | 220 tests/testthat/Rplots.pdf |binary tests/testthat/rsafit.rds |binary tests/testthat/test-misc.R | 1460 +++--- vignettes/categorical.Rmd | 275 - vignettes/interactions.Rmd | 1305 ++--- vignettes/summ.Rmd | 1145 ++--- vignettes/svycor.Rmd | 276 - 78 files changed, 25035 insertions(+), 23647 deletions(-)
Title: A GeoJson Processing Toolkit
Description: Includes functions for processing GeoJson objects <https://en.wikipedia.org/wiki/GeoJSON> relying on 'RFC 7946' <https://tools.ietf.org/pdf/rfc7946.pdf>. The geojson encoding is based on 'json11', a tiny JSON library for 'C++11' <https://github.com/dropbox/json11>. Furthermore, the source code is exported in R through the 'Rcpp' and 'RcppArmadillo' packages.
Author: Lampros Mouselimis <mouselimislampros@gmail.com>
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between geojsonR versions 1.0.5 dated 2018-07-21 and 1.0.6 dated 2018-09-23
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 4 ++++ README.md | 3 +-- inst/doc/the_geojsonR_package.html | 4 ++-- src/FROM_geojson.cpp | 6 +++--- 6 files changed, 19 insertions(+), 16 deletions(-)
Title: Cyclic Coordinate Descent for Logistic, Poisson and Survival
Analysis
Description: This model fitting tool incorporates cyclic coordinate descent and
majorization-minimization approaches to fit a variety of regression models
found in large-scale observational healthcare data. Implementations focus
on computational optimization and fine-scale parallelization to yield
efficient inference in massive datasets. Please see:
Suchard, Simpson, Zorych, Ryan and Madigan (2013) <doi:10.1145/2414416.2414791>.
Author: Marc A. Suchard [aut, cre],
Martijn J. Schuemie [aut],
Trevor R. Shaddox [aut],
Yuxi Tian [aut],
Jianxiao Yang [aut],
Sushil Mittal [ctb],
Observational Health Data Sciences and Informatics [cph],
Marcus Geelnard [cph, ctb] (provided the TinyThread library),
Rutgers University [cph, ctb] (provided the HParSearch routine),
R Development Core Team [cph, ctb] (provided the ZeroIn routine)
Maintainer: Marc A. Suchard <msuchard@ucla.edu>
Diff between Cyclops versions 2.0.0 dated 2018-09-18 and 2.0.1 dated 2018-09-23
DESCRIPTION | 10 MD5 | 14 NAMESPACE | 1 NEWS | 7 R/cyclops.R | 1 src/cyclops/ModelData.cpp | 8 src/cyclops/engine/AbstractModelSpecifics.cpp | 157 ------ src/cyclops/engine/ModelSpecifics.hpp | 599 +++----------------------- 8 files changed, 106 insertions(+), 691 deletions(-)
Title: Non-Homogeneous Markov Switching Autoregressive Models
Description: Calibration, simulation, validation of (non-)homogeneous Markov switching autoregressive models with Gaussian or von Mises innovations. Penalization methods are implemented for Markov Switching Vector Autoregressive Models of order 1 only. Most functions of the package handle missing values.
Author: Valerie Monbet
Maintainer: Valerie Monbet <valerie.monbet@gmail.com>
Diff between NHMSAR versions 1.11 dated 2018-08-06 and 1.12 dated 2018-09-23
DESCRIPTION | 8 - MD5 | 18 +- R/Mstep.hh.MSAR.R | 30 +++- R/Mstep.hh.SCAD.MSAR.R | 332 ++++++++++++++++++++++++------------------------- R/Mstep.hn.MSAR.R | 2 R/fit.MSAR.R | 8 - R/init.theta.MSAR.R | 4 R/valid_all.MSAR.R | 3 man/Mstep.hh.MSAR.Rd | 5 man/fit.MSAR.Rd | 10 + 10 files changed, 221 insertions(+), 199 deletions(-)
Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors as described in van Hees and colleagues (2014) <doi: 10.1152/japplphysiol.00421.2014> and (2015) <doi: 10.1371/journal.pone.0142533>. The package has been developed and tested for binary data from 'GENEActiv' <https://www.activinsights.com/> and GENEA devices (not for sale), .csv-export data from 'Actigraph' <http://actigraphcorp.com> devices, and .cwa and .wav-format data from 'Axivity' <https://axivity.com/product/ax3>. These devices are currently widely used in research on human daily physical activity.
Author: Vincent T van Hees [aut, cre],
Zhou Fang [ctb],
Jing Hua Zhao [ctb],
Joe Heywood [ctb],
Evgeny Mirkes [ctb],
Severine Sabia [ctb],
Jairo H Migueles [ctb]
Maintainer: Vincent T van Hees <vincentvanhees@gmail.com>
Diff between GGIR versions 1.6-0 dated 2018-07-29 and 1.6-7 dated 2018-09-23
DESCRIPTION | 10 - MD5 | 43 +++--- NAMESPACE | 2 R/g.analyse.R | 73 ++++++++++- R/g.getstarttime.R | 26 +++ R/g.inspectfile.R | 4 R/g.intensitygradient.R |only R/g.part2.R | 4 R/g.part4.R | 22 +++ R/g.report.part4.R | 196 +++++++++++++++--------------- R/g.shell.GGIR.R | 3 README.md | 18 +- inst/NEWS.Rd | 21 ++- inst/doc/GGIR.Rmd | 22 +-- inst/doc/GGIR.html | 7 - man/GGIR-package.Rd | 6 man/g.analyse.Rd | 28 +++- man/g.getM5L5.Rd | 4 man/g.intensitygradient.Rd |only man/g.part2.Rd | 6 man/g.part3.Rd | 3 man/g.part4.Rd | 93 +++++++++----- tests/testthat/test_g.intensitygradient.R |only vignettes/GGIR.Rmd | 22 +-- 24 files changed, 410 insertions(+), 203 deletions(-)
Title: Regularized Greedy Forest
Description: Regularized Greedy Forest wrapper of the 'Regularized Greedy Forest' <https://github.com/RGF-team/rgf/tree/master/python-package> 'python' package, which also includes a Multi-core implementation (FastRGF) <https://github.com/RGF-team/rgf/tree/master/FastRGF>.
Author: Lampros Mouselimis [aut, cre],
Ryosuke Fukatani [cph] (Author of the python wrapper of the
'Regularized Greedy Forest' machine learning algorithm),
Nikita Titov [cph] (Author of the python wrapper of the 'Regularized
Greedy Forest' machine learning algorithm),
Tong Zhang [cph] (Author of the 'Regularized Greedy Forest' and of the
Multi-core implementation of Regularized Greedy Forest machine
learning algorithm),
Rie Johnson [cph] (Author of the 'Regularized Greedy Forest' machine
learning algorithm)
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between RGF versions 1.0.4 dated 2018-07-22 and 1.0.5 dated 2018-09-23
RGF-1.0.4/RGF/tests/testthat/test_package.R |only RGF-1.0.5/RGF/DESCRIPTION | 25 RGF-1.0.5/RGF/LICENSE.note | 72 -- RGF-1.0.5/RGF/MD5 | 38 - RGF-1.0.5/RGF/NAMESPACE | 1 RGF-1.0.5/RGF/NEWS.md | 26 RGF-1.0.5/RGF/R/package.R | 1 RGF-1.0.5/RGF/R/utils.R | 695 +++++++++++++----------- RGF-1.0.5/RGF/R/zzz.R | 7 RGF-1.0.5/RGF/README.md | 42 - RGF-1.0.5/RGF/inst/doc/the_RGF_package.R | 6 RGF-1.0.5/RGF/inst/doc/the_RGF_package.Rmd | 29 - RGF-1.0.5/RGF/inst/doc/the_RGF_package.html | 36 - RGF-1.0.5/RGF/man/FastRGF_Classifier.Rd | 6 RGF-1.0.5/RGF/man/FastRGF_Regressor.Rd | 6 RGF-1.0.5/RGF/man/RGF_Classifier.Rd | 12 RGF-1.0.5/RGF/man/RGF_Regressor.Rd | 12 RGF-1.0.5/RGF/man/RGF_cleanup_temp_files.Rd | 4 RGF-1.0.5/RGF/man/TO_scipy_sparse.Rd | 42 - RGF-1.0.5/RGF/tests/testthat/test-RGF_package.R |only RGF-1.0.5/RGF/vignettes/the_RGF_package.Rmd | 29 - 21 files changed, 554 insertions(+), 535 deletions(-)
Title: Nonlinear Time Series Analysis
Description: Functions for nonlinear time series analysis. This package permits
the computation of the most-used nonlinear statistics/algorithms
including generalized correlation dimension, information dimension,
largest Lyapunov exponent, sample entropy and Recurrence
Quantification Analysis (RQA), among others. Basic routines
for surrogate data testing are also included. Part of this work
was based on the book "Nonlinear time series analysis" by
Holger Kantz and Thomas Schreiber (ISBN: 9780521529020).
Author: Constantino A. Garcia [aut, cre],
Gunther Sawitzki [ctb]
Maintainer: ORPHANED
Diff between nonlinearTseries versions 0.2.4 dated 2018-08-10 and 0.2.5 dated 2018-09-23
DESCRIPTION | 12 ++++++++---- MD5 | 4 ++-- src/DFA.cpp | 2 +- 3 files changed, 11 insertions(+), 7 deletions(-)
More information about nonlinearTseries at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-09 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-05 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-02 0.7.1
2017-11-17 0.7.0
2017-05-09 0.6-1
2017-04-03 0.6-0
2016-12-16 0.5-2
2016-11-11 0.5-1
2016-11-07 0.5-0
2016-03-17 0.4-1
2016-01-21 0.4-0
2015-04-20 0.3-0
2015-04-07 0.2-2
2015-03-23 0.2-1
2015-02-27 0.2-0
2014-04-22 0.1-2
2014-04-17 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-02-21 2.0
Title: Stochastic Integrating
Description: An implementation of four stochastic methods of integrating in R, including:
1. Stochastic Point Method (or Monte Carlo Method);
2. Mean Value Method;
3. Important Sampling Method;
4. Stratified Sampling Method.
It can be used to estimate one-dimension or multi-dimension integration by Monte Carlo methods. And the estimated variance (precision) is given.
Reference: Caflisch, R. E. (1998) <doi:10.1017/S0962492900002804>.
Author: Jinhong Du
Maintainer: Jinhong Du <jayduking@gmail.com>
Diff between SI versions 0.1.0 dated 2018-04-17 and 0.2.0 dated 2018-09-23
DESCRIPTION | 9 +++--- MD5 | 11 ++++--- NEWS.md |only R/SI.R | 67 ++++++++++++++++++++++++++++++++++++---------- inst/doc/my-vignette.Rmd | 18 ++++++++++-- inst/doc/my-vignette.html | 18 ++++++++---- vignettes/my-vignette.Rmd | 18 ++++++++++-- 7 files changed, 107 insertions(+), 34 deletions(-)