Title: Ace Editor Bindings for Shiny
Description: Ace editor bindings to enable a rich text editing environment
within Shiny.
Author: Vincent Nijs [aut, cre],
Forest Fang [aut],
Trestle Technology, LLC [aut],
Jeff Allen [aut],
Institut de Radioprotection et de Surete Nucleaire [cph],
Ajax.org B.V. [ctb, cph] (Ace)
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>
Diff between shinyAce versions 0.3.1 dated 2018-05-15 and 0.3.2 dated 2018-10-02
DESCRIPTION | 10 +++++----- LICENSE | 4 ++-- MD5 | 10 +++++----- NEWS.md | 5 +++++ README.md | 18 +++++++++--------- man/aceEditor.Rd | 13 +++++++------ 6 files changed, 33 insertions(+), 27 deletions(-)
Title: Access Vegetation Databases and Treat Taxonomy
Description: Handling of vegetation data from different sources (
Turboveg <http://www.synbiosys.alterra.nl/turboveg/>;
the German national repository <http://www.vegetweb.de> and others.
Taxonomic harmonization (given appropriate taxonomic lists,
e.g. the German taxonomic standard list "GermanSL", <http://germansl.infinitenature.org>).
Author: Florian Jansen <florian.jansen@uni-rostock.de>
Maintainer: Florian Jansen <florian.jansen@uni-rostock.de>
Diff between vegdata versions 0.9.1 dated 2017-08-21 and 0.9.3 dated 2018-10-02
vegdata-0.9.1/vegdata/R/tax.val.r |only vegdata-0.9.1/vegdata/R/vw.vegetweb.r |only vegdata-0.9.1/vegdata/inst/tvdata/Data/elbaue/tvwin.set |only vegdata-0.9.1/vegdata/inst/tvdata/Data/taxatest/tvwin.set |only vegdata-0.9.1/vegdata/man/vw.vegetweb.Rd |only vegdata-0.9.3/vegdata/DESCRIPTION | 13 - vegdata-0.9.3/vegdata/MD5 | 91 +++++----- vegdata-0.9.3/vegdata/NAMESPACE | 19 +- vegdata-0.9.3/vegdata/R/internal.r | 101 +++++++++++- vegdata-0.9.3/vegdata/R/isc.r | 79 +++++---- vegdata-0.9.3/vegdata/R/reShape.veg.r | 40 ++-- vegdata-0.9.3/vegdata/R/syntab.r | 26 +-- vegdata-0.9.3/vegdata/R/tax.child.r | 25 +- vegdata-0.9.3/vegdata/R/tax.names.r | 23 ++ vegdata-0.9.3/vegdata/R/tax.r | 26 +-- vegdata-0.9.3/vegdata/R/tax.reflist.r | 10 - vegdata-0.9.3/vegdata/R/taxval.r |only vegdata-0.9.3/vegdata/R/tv.coverperc.r | 16 + vegdata-0.9.3/vegdata/R/tv.home.r | 8 vegdata-0.9.3/vegdata/R/tv.obs.r | 2 vegdata-0.9.3/vegdata/R/tv.site.r | 6 vegdata-0.9.3/vegdata/R/tv.traits.r | 23 -- vegdata-0.9.3/vegdata/R/tv.veg.r | 52 ++++-- vegdata-0.9.3/vegdata/R/tv.write.r | 98 +++++------ vegdata-0.9.3/vegdata/R/tv.xml.r |only vegdata-0.9.3/vegdata/build/vignette.rds |binary vegdata-0.9.3/vegdata/inst/ChangeLog | 15 + vegdata-0.9.3/vegdata/inst/doc/vegdata.R | 53 ++---- vegdata-0.9.3/vegdata/inst/doc/vegdata.Rnw | 36 ++-- vegdata-0.9.3/vegdata/inst/doc/vegdata.pdf |binary vegdata-0.9.3/vegdata/inst/tvdata/Data/elbaue/tvwin.dbf |binary vegdata-0.9.3/vegdata/inst/tvdata/Data/taxatest/tvabund.dbf |binary vegdata-0.9.3/vegdata/inst/tvdata/Popup/tvscale.dbf |binary vegdata-0.9.3/vegdata/man/as.data.frame.list.Rd |only vegdata-0.9.3/vegdata/man/isc.Rd | 10 - vegdata-0.9.3/vegdata/man/lc.Rd | 2 vegdata-0.9.3/vegdata/man/monotypic.Rd | 2 vegdata-0.9.3/vegdata/man/syntab.Rd | 2 vegdata-0.9.3/vegdata/man/tax.Rd | 2 vegdata-0.9.3/vegdata/man/tax.val.Rd | 2 vegdata-0.9.3/vegdata/man/tv.biblio.Rd | 2 vegdata-0.9.3/vegdata/man/tv.coverperc.Rd | 2 vegdata-0.9.3/vegdata/man/tv.metadata.Rd | 2 vegdata-0.9.3/vegdata/man/tv.obs.Rd | 2 vegdata-0.9.3/vegdata/man/tv.readXML.Rd |only vegdata-0.9.3/vegdata/man/tv.site.Rd | 2 vegdata-0.9.3/vegdata/man/tv.traits.Rd | 2 vegdata-0.9.3/vegdata/man/tv.veg.Rd | 5 vegdata-0.9.3/vegdata/man/tv.write.Rd | 18 +- vegdata-0.9.3/vegdata/man/vegdata-package.Rd | 2 vegdata-0.9.3/vegdata/vignettes/vegdata.Rnw | 36 ++-- 51 files changed, 483 insertions(+), 372 deletions(-)
Title: Safely Access the RStudio API
Description: Access the RStudio API (if available) and provide informative error
messages when it's not.
Author: JJ Allaire [aut, cre],
Hadley Wickham [aut],
Kevin Ushey [aut],
Gary Ritchie [aut],
RStudio [cph]
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between rstudioapi versions 0.7 dated 2017-09-07 and 0.8 dated 2018-10-02
DESCRIPTION | 8 MD5 | 79 ++++---- NAMESPACE | 10 + NEWS.md | 27 ++ R/build-tools.R |only R/dialogs.R | 32 +++ R/document-api.R | 24 ++ R/document-methods.R | 6 R/preview.R |only R/stubs.R | 26 +- R/terminal.R | 21 +- R/themes.R | 90 +++++++++ build/vignette.rds |binary inst/doc/dialogs.html | 299 ++++++++++++++++++++++--------- inst/doc/document-manipulation.html | 313 +++++++++++++++++++++++--------- inst/doc/introduction.html | 186 ++++++++++++++++--- inst/doc/projects.html | 266 ++++++++++++++++++++------- inst/doc/r-session.html | 262 ++++++++++++++++++++------- inst/doc/terminal.html | 343 ++++++++++++++++++++++++------------ man/addTheme.Rd |only man/applyTheme.Rd |only man/askForSecret.Rd |only man/build-tools.Rd |only man/callFun.Rd | 4 man/convertTheme.Rd |only man/createProjectTemplate.Rd | 5 man/document_position.Rd | 2 man/document_range.Rd | 2 man/file-dialogs.Rd | 19 - man/getThemeInfo.Rd | 4 man/getThemes.Rd |only man/getVersion.Rd | 2 man/hasColorConsole.Rd | 2 man/hasFun.Rd | 10 - man/isAvailable.Rd | 4 man/persistent-values.Rd | 4 man/previewSql.Rd |only man/projects.Rd | 4 man/restartSession.Rd | 2 man/rstudio-documents.Rd | 20 +- man/rstudio-editors.Rd | 2 man/savePlotAsImage.Rd | 4 man/showDialog.Rd | 4 man/terminalCreate.Rd | 17 + man/terminalExecute.Rd | 2 45 files changed, 1542 insertions(+), 563 deletions(-)
Title: Composable Preprocessing Operators and Pipelines for Machine
Learning
Description: Toolset that enriches 'mlr' with a diverse set of preprocessing
operators. Composable Preprocessing Operators ("CPO"s) are first-class
R objects that can be applied to data.frames and 'mlr' "Task"s to modify
data, can be attached to 'mlr' "Learner"s to add preprocessing to machine
learning algorithms, and can be composed to form preprocessing pipelines.
Author: Martin Binder [aut, cre],
Bernd Bischl [ctb],
Michel Lang [ctb],
Lars Kotthoff [ctb]
Maintainer: Martin Binder <developer.mb706@doublecaret.com>
Diff between mlrCPO versions 0.3.4 dated 2018-07-02 and 0.3.4-1 dated 2018-10-02
DESCRIPTION | 10 MD5 | 22 README.md | 2 build/vignette.rds |binary inst/doc/a_1_getting_started.html | 1458 +++++++++++++++----------- inst/doc/a_2_mlrCPO_core.html | 1642 ++++++++++++++++------------- inst/doc/a_3_all_CPOs.html | 1472 +++++++++++++++----------- inst/doc/a_4_custom_CPOs.html | 1773 +++++++++++++++++--------------- inst/doc/z_1_getting_started_terse.html | 648 +++++++---- inst/doc/z_2_mlrCPO_core_terse.html | 738 ++++++++----- inst/doc/z_3_all_CPOs_terse.html | 616 +++++++---- inst/doc/z_4_custom_CPOs_terse.html | 1080 +++++++++++-------- 12 files changed, 5580 insertions(+), 3881 deletions(-)
Title: An Alternative Conflict Resolution Strategy
Description: R's default conflict management system gives the most recently
loaded package precedence. This can make it hard to detect conflicts,
particularly when they arise because a package update creates ambiguity
that did not previously exist. 'conflicted' takes a different approach,
making every conflict an error and forcing you to choose which function
to use.
Author: Hadley Wickham [aut, cre],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between conflicted versions 1.0.0 dated 2018-09-15 and 1.0.1 dated 2018-10-02
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 8 ++++++++ R/conflicts.R | 10 +++++++--- R/find.R | 3 +++ R/zzz.R | 4 ---- tests/testthat/test-zzz.R | 5 ++--- 7 files changed, 29 insertions(+), 19 deletions(-)
Title: Nonparametric Variable Importance
Description: Calculate point estimates of and valid confidence intervals for
nonparametric variable importance measures in high and low dimensions,
using flexible estimators of the underlying regression functions. For more information
about the methods, please see Williamson et al. (2017) <https://biostats.bepress.com/uwbiostat/paper422/>.
Author: Brian D. Williamson [aut, cre],
Noah Simon [aut],
Marco Carone [aut]
Maintainer: Brian D. Williamson <brianw26@uw.edu>
Diff between vimp versions 1.1.2 dated 2018-09-20 and 1.1.3 dated 2018-10-02
DESCRIPTION | 8 +++--- MD5 | 16 ++++++------- R/cv_vim.R | 42 ++++++++++++++++++++++------------- R/cv_vim_nodonsker.R | 44 ++++++++++++++++++++++--------------- R/vimp_regression.R | 15 ++++++++++-- build/vignette.rds |binary inst/doc/introduction_to_vimp.html | 14 +++++------ man/cv_vim.Rd | 26 ++++++++++++--------- man/cv_vim_nodonsker.Rd | 26 ++++++++++++--------- 9 files changed, 115 insertions(+), 76 deletions(-)
Title: Classification of RNA Sequences using Complex Network Theory
Description: It makes the creation of networks from sequences of RNA, with this is done the abstraction of characteristics of these networks with a methodology of threshold for the purpose of making a classification between the classes of the sequences. There are four data present in the 'BASiNET' package, "sequences", "sequences2", "sequences-predict" and "sequences2-predict" with 11, 10, 11 and 11 sequences respectively. These sequences were taken from the data set used in the article (LI, Aimin; ZHANG, Junying; ZHOU, Zhongyin, 2014) <doi:10.1186/1471-2105-15-311>, these sequences are used to run examples. The BASiNET was published on Nucleic Acids Research, (ITO, Eric; KATAHIRA, Isaque; VICENTE, Fábio; PEREIRA, Felipe; LOPES, Fabrício, 2018) <doi:10.1093/nar/gky462>.
Author: Eric Augusto Ito
Maintainer: Eric Augusto Ito <ericaugustoito@hotmail.com>
Diff between BASiNET versions 0.0.3 dated 2018-04-18 and 0.0.4 dated 2018-10-02
BASiNET-0.0.3/BASiNET/inst/extdata/predict.fasta |only BASiNET-0.0.4/BASiNET/DESCRIPTION | 10 BASiNET-0.0.4/BASiNET/MD5 | 35 BASiNET-0.0.4/BASiNET/NAMESPACE | 28 BASiNET-0.0.4/BASiNET/R/classification.R | 78 - BASiNET-0.0.4/BASiNET/R/minMax.R | 2 BASiNET-0.0.4/BASiNET/build/vignette.rds |binary BASiNET-0.0.4/BASiNET/inst/doc/BASiNET.R | 31 BASiNET-0.0.4/BASiNET/inst/doc/BASiNET.Rmd | 9 BASiNET-0.0.4/BASiNET/inst/doc/BASiNET.html | 696 +++++++----- BASiNET-0.0.4/BASiNET/inst/extdata/sequences-predict.fasta |only BASiNET-0.0.4/BASiNET/inst/extdata/sequences2-predict.fasta |only BASiNET-0.0.4/BASiNET/man/classification.Rd | 115 - BASiNET-0.0.4/BASiNET/man/createGraph2D.Rd | 46 BASiNET-0.0.4/BASiNET/man/createNet.Rd | 48 BASiNET-0.0.4/BASiNET/man/measures.Rd | 46 BASiNET-0.0.4/BASiNET/man/minMax.Rd | 56 BASiNET-0.0.4/BASiNET/man/reschedule.Rd | 56 BASiNET-0.0.4/BASiNET/man/threshold.Rd | 44 BASiNET-0.0.4/BASiNET/vignettes/BASiNET.Rmd | 9 20 files changed, 753 insertions(+), 556 deletions(-)
Title: Item Response Theory and Computer-Based Testing in R
Description: A suite of practical psychometric analysis and research tools of item response
theory, including the 3-parameter-logistic model and the generalized partial
credit model as well as functions to perform: (1) parameter estimation, (2) automated
test assembly, (3) simulation of computerized adaptive testing (CAT), and (4) assembly and
simulation of multistage testing. More documentation at <https://github.com/xluo11/xxIRT>.
Author: Xiao Luo [aut, cre]
Maintainer: Xiao Luo <xluo1986@gmail.com>
Diff between xxIRT versions 2.1.0 dated 2018-07-05 and 2.1.1 dated 2018-10-02
DESCRIPTION | 10 - MD5 | 36 ++- NAMESPACE | 143 +++++++-------- R/module0_helpers.R |only R/module0_misc.R |only R/module0_utils.R | 54 ----- R/module1_model_3pl.R | 76 +++++++- R/module1_model_gpcm.R | 46 ++++ R/module3_ata.R | 453 ++++++++++++++++++++++++++++++++----------------- R/module4_cat.R | 20 +- R/module5_mst.R | 107 ++++++----- R/module5_mst_sim.R | 9 man/ata.Rd | 383 +++++++++++++++++++---------------------- man/cat_sim.Rd | 322 +++++++++++++++++----------------- man/helpers.Rd |only man/misc.Rd |only man/model_3pl.Rd | 400 ++++++++++++++++++++----------------------- man/model_gpcm.Rd | 348 ++++++++++++++++--------------------- man/mst.Rd | 441 +++++++++++++++++++++++------------------------ man/mst_sim.Rd | 108 +++++------ man/utils.Rd | 79 +++----- 21 files changed, 1562 insertions(+), 1473 deletions(-)
Title: Air Quality Data of Switzerland for One Year in 30 Min
Resolution
Description: Ozone, NOx (= Sum of nitrogen monoxide and nitrogen dioxide), nitrogen monoxide, ambient temperature, dew point, wind speed and wind direction at 3 sites around lake of Lucerne in Central Switzerland in 30 min time resolution for year 2004.
Author: Rene Locher
Maintainer: Rene Locher <rene.locher@zhaw.ch>
Diff between SwissAir versions 1.1.4 dated 2012-11-01 and 1.1.5 dated 2018-10-02
ChangeLog | 10 +++ DESCRIPTION | 17 ++---- MD5 | 8 +-- data/AirQual.rda |binary man/AirQual.Rd | 138 +++++++++++++++++++++++++++---------------------------- 5 files changed, 90 insertions(+), 83 deletions(-)
Title: Polyhedra Database
Description: A polyhedra database scraped from various sources as R6 objects and 'rgl' visualizing capabilities.
Author: Alejandro Baranek [aut, com, cre, cph],
Leonardo Belen [aut, com, cph]
Maintainer: Alejandro Baranek <abaranek@dc.uba.ar>
Diff between Rpolyhedra versions 0.2.6 dated 2018-07-10 and 0.2.7 dated 2018-10-02
Rpolyhedra-0.2.6/Rpolyhedra/R/xml-lib.R |only Rpolyhedra-0.2.6/Rpolyhedra/inst/extdata/dmccooey.com |only Rpolyhedra-0.2.6/Rpolyhedra/inst/extdata/www.netlib.org |only Rpolyhedra-0.2.7/Rpolyhedra/DESCRIPTION | 16 Rpolyhedra-0.2.7/Rpolyhedra/MD5 | 441 ++++++---- Rpolyhedra-0.2.7/Rpolyhedra/NAMESPACE | 2 Rpolyhedra-0.2.7/Rpolyhedra/R/db-lib.R | 244 +++-- Rpolyhedra-0.2.7/Rpolyhedra/R/ledger-lib.R | 55 - Rpolyhedra-0.2.7/Rpolyhedra/R/polyhedra-lib.R | 182 +++- Rpolyhedra-0.2.7/Rpolyhedra/R/serialization-lib.R |only Rpolyhedra-0.2.7/Rpolyhedra/R/zzz.R | 9 Rpolyhedra-0.2.7/Rpolyhedra/inst/doc/Rpolyhedra.html | 10 Rpolyhedra-0.2.7/Rpolyhedra/inst/extdata/polyhedra |only Rpolyhedra-0.2.7/Rpolyhedra/inst/extdata/polyhedra.0.2.6.RDS |only Rpolyhedra-0.2.7/Rpolyhedra/inst/extdata/polyhedra.RDS |binary Rpolyhedra-0.2.7/Rpolyhedra/inst/extdata/sources |only Rpolyhedra-0.2.7/Rpolyhedra/inst/extdata/version | 2 Rpolyhedra-0.2.7/Rpolyhedra/inst/po/en/LC_MESSAGES/R-Rpolyhedra.mo |binary Rpolyhedra-0.2.7/Rpolyhedra/inst/po/es/LC_MESSAGES/R-Rpolyhedra.mo |binary Rpolyhedra-0.2.7/Rpolyhedra/man/PolyhedraDatabase.class.Rd | 2 Rpolyhedra-0.2.7/Rpolyhedra/man/Polyhedron.class.Rd | 8 Rpolyhedra-0.2.7/Rpolyhedra/man/PolyhedronScraperConfigurationDmccoey.class.Rd | 2 Rpolyhedra-0.2.7/Rpolyhedra/man/PolyhedronScraperConfigurationNetlib.class.Rd | 2 Rpolyhedra-0.2.7/Rpolyhedra/man/PolyhedronState.class.Rd | 4 Rpolyhedra-0.2.7/Rpolyhedra/man/PolyhedronStateDefined.class.Rd | 6 Rpolyhedra-0.2.7/Rpolyhedra/man/PolyhedronStateDeserializer.class.Rd |only Rpolyhedra-0.2.7/Rpolyhedra/man/PolyhedronStateDmccoeyScraper.class.Rd | 2 Rpolyhedra-0.2.7/Rpolyhedra/man/PolyhedronStateNetlibScraper.class.Rd | 4 Rpolyhedra-0.2.7/Rpolyhedra/man/ScraperLedger.class.Rd | 7 Rpolyhedra-0.2.7/Rpolyhedra/man/hydratePolyhedron.Rd |only Rpolyhedra-0.2.7/Rpolyhedra/man/persistPolyhedron.Rd |only Rpolyhedra-0.2.7/Rpolyhedra/man/polyhedronToXML.Rd | 10 Rpolyhedra-0.2.7/Rpolyhedra/po/R-en.po | 6 Rpolyhedra-0.2.7/Rpolyhedra/po/R-es.po | 3 Rpolyhedra-0.2.7/Rpolyhedra/tests/testthat/test_rpolyhedra_lib.R | 14 35 files changed, 668 insertions(+), 363 deletions(-)
Title: R Wrappers for EXPOKIT; Other Matrix Functions
Description: Wraps some of the matrix exponentiation
utilities from EXPOKIT (<http://www.maths.uq.edu.au/expokit/>),
a FORTRAN library that is widely recommended for matrix
exponentiation (Sidje RB, 1998. "Expokit: A Software Package
for Computing Matrix Exponentials." ACM Trans. Math. Softw.
24(1): 130-156). EXPOKIT includes functions for
exponentiating both small, dense matrices, and large, sparse
matrices (in sparse matrices, most of the cells have value 0).
Rapid matrix exponentiation is useful in phylogenetics when we
have a large number of states (as we do when we are inferring
the history of transitions between the possible geographic
ranges of a species), but is probably useful in other ways as
well.
Author: Nicholas J. Matzke [aut, cre, cph],
Roger B. Sidje [aut, cph],
Drew Schmidt [aut]
Maintainer: ORPHANED
Diff between rexpokit versions 0.26.3 dated 2018-05-06 and 0.26.6 dated 2018-10-02
DESCRIPTION | 11 - MD5 | 31 +- NEWS | 98 +++++++++ R/rexpokit-package.R | 4 R/rexpokit.R | 15 + R/wrappers.r | 8 README.md | 4 inst/REFERENCES.bib | 2 inst/notes/2017-08-15_CRAN_submission.txt | 10 inst/notes/2018-10-02_submission_email.txt |only inst/notes/src_changes_notes/installation_by_hand.txt | 48 +++- man/00_rexpokit-package.Rd | 6 src/itscale5.f | 5 src/lapack/blas_mod.f | 70 ++++-- src/lapack/lapack.f | 47 ++-- src/my_expokit.f | 188 +++++++++++++----- src/my_matexp.f | 12 - 17 files changed, 423 insertions(+), 136 deletions(-)
Title: Simulating Neutral Landscape Models
Description: Provides neutral landscape models (<doi:10.1007/BF02275262>,
<http://sci-hub.tw/10.1007/bf02275262>).
Neutral landscape models range from "hard"
neutral models (completely random distributed), to "soft" neutral models
(definable spatial characteristics) and generate landscape patterns that are
independent of ecological processes.
Thus, these patterns can be used as null models in landscape ecology. 'nlmr'
combines a large number of algorithms from other published software for
simulating neutral landscapes. The simulation results are obtained in a
geospatial data format (raster* objects from the 'raster' package) and can,
therefore, be used in any sort of raster data operation that is performed
with standard observation data.
Author: Marco Sciaini [aut, cre] (<https://orcid.org/0000-0002-3042-5435>),
Matthias Fritsch [aut],
Craig Simpkins [aut] (<https://orcid.org/0000-0003-3212-1379>),
Cédric Scherer [aut] (<https://orcid.org/0000-0003-0465-2543>),
Laura Graham [rev] (Laura reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/188),
Jeffrey Hollister [rev] (Jeffrey reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/188)
Maintainer: Marco Sciaini <sciaini.marco@gmail.com>
Diff between NLMR versions 0.3.1 dated 2018-09-28 and 0.3.2 dated 2018-10-02
DESCRIPTION | 6 - MD5 | 16 ++-- NEWS.md | 3 inst/CITATION | 42 +++++------ inst/doc/getstarted.html | 12 +-- vignettes/getstarted_files/figure-html/unnamed-chunk-1-1.png |binary vignettes/getstarted_files/figure-html/unnamed-chunk-2-1.png |binary vignettes/getstarted_files/figure-html/unnamed-chunk-2-2.png |binary vignettes/getstarted_files/figure-html/unnamed-chunk-3-1.png |binary 9 files changed, 41 insertions(+), 38 deletions(-)
Title: IRT Equating Methods
Description: Computation of direct, chain and average (bisector) equating coefficients with
standard errors using Item Response Theory (IRT) methods for dichotomous items
(Battauz (2013) <doi:10.1007/s11336-012-9316-y>,
Battauz (2015) <doi:10.18637/jss.v068.i07>).
Test scoring can be performed by true score equating and observed score equating methods.
DIF detection can be performed using a Wald-type test
(Battauz (2018) <doi:10.1007/s10260-018-00442-w>).
Author: Michela Battauz
Maintainer: Michela Battauz <michela.battauz@uniud.it>
Diff between equateIRT versions 2.0-5 dated 2018-06-08 and 2.1.0 dated 2018-10-02
DESCRIPTION | 14 MD5 | 25 - NAMESPACE | 6 R/functions.r | 937 +++++++++++++++++++++++++++------------ build/vignette.rds |binary data/dataDIF.rda |only inst/NEWS | 4 inst/doc/equateIRT_paper.pdf |binary inst/doc/equateIRT_tutorial.html | 5 man/dataDIF.Rd |only man/dif.test.Rd |only man/direc.Rd | 13 man/equateIRT-internal.Rd | 4 man/equateIRT-package.Rd | 11 man/modIRT.Rd | 6 15 files changed, 727 insertions(+), 298 deletions(-)
Title: Conditional Random Fields for Labelling Sequential Data in
Natural Language Processing
Description: Wraps the 'CRFsuite' library <https://github.com/chokkan/crfsuite> allowing users
to fit a Conditional Random Field model and to apply it on existing data.
The focus of the implementation is in the area of Natural Language Processing where this R package allows you to easily build and apply models
for named entity recognition, text chunking, part of speech tagging, intent recognition or classification of any category you have in mind. Next to training, a small web application
is included in the package to allow you to easily construct training data.
Author: Jan Wijffels [aut, cre, cph] (R wrapper),
BNOSAC [cph] (R wrapper),
Naoaki Okazaki [aut, ctb, cph] (CRFsuite library (BSD licensed),
libLBFGS library (MIT licensed), Constant Quark Database software
(BSD licensed)),
Bob Jenkins [aut, ctb] (File src/cqdb/src/lookup3.c (Public Domain)),
Jorge Nocedal [aut, ctb, cph] (libLBFGS library (MIT licensed)),
Jesse Long [aut, ctb, cph] (RumAVL library (MIT licensed))
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between crfsuite versions 0.1 dated 2018-09-28 and 0.1.1 dated 2018-10-02
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ inst/doc/crfsuite-nlp.html | 20 +++++++++++--------- src/crf/src/vecmath.h | 4 ++++ 5 files changed, 26 insertions(+), 16 deletions(-)
Title: Advanced Policing Techniques for the Board Game "Letters from
Whitechapel"
Description: Provides a set of functions to make tracking the hidden movements
of the 'Jack' player easier. By tracking every possible path Jack might have
traveled from the point of the initial murder including special movement such
as through alleyways and via carriages, the police can more accurately narrow
the field of their search. Additionally, by tracking all possible hideouts from
round to round, rounds 3 and 4 should have a vastly reduced field of search.
Author: Mark Ewing [aut, cre]
Maintainer: Mark Ewing <b.mark@ewingsonline.com>
Diff between whitechapelR versions 0.2.1 dated 2018-07-31 and 0.3.0 dated 2018-10-02
DESCRIPTION | 6 +++--- MD5 | 13 +++++++------ NEWS.md | 12 ++++++++++-- R/show_board.R | 2 +- R/take_a_step.R | 1 + README.md | 2 +- tests/testthat/Rplots.pdf |only tests/testthat/test_whitechapel.R | 11 ++++++++--- 8 files changed, 31 insertions(+), 16 deletions(-)
Title: Stability Analysis of Genotype by Environment Interaction (GEI)
Description: Functionalities to perform Stability Analysis of Genotype by Environment Interaction (GEI) to identify superior and stable genotypes under diverse environments. It performs Eberhart & Russel's ANOVA (1966) (<doi:10.2135/cropsci1966.0011183X000600010011x>), Finlay and Wilkinson (1963) Joint Linear Regression (<doi:10.1071/AR9630742>), Wricke (1962, 1964) Ecovalence, Shukla's stability variance parameter (1972) (<doi:10.1038/hdy.1972.87>) and Kang's (1991) (<doi:10.2134/agronj1991.00021962008300010037x>) simultaneous selection for high yielding and stable parameter.
Author: Muhammad Yaseen [aut, cre],
Kent M. Eskridge [aut, ctb],
Ghulam Murtaza [aut, ctb]
Maintainer: Muhammad Yaseen <myaseen208@gmail.com>
Diff between stability versions 0.4.0 dated 2018-09-10 and 0.5.0 dated 2018-10-02
DESCRIPTION | 14 +++++++++----- MD5 | 8 +++++--- NAMESPACE | 2 ++ NEWS.md | 6 ++++++ R/indiv_anova.R |only man/indiv_anova.Rd |only 6 files changed, 22 insertions(+), 8 deletions(-)
Title: Sampling Variance Estimation
Description: Functions to calculate some point estimators and estimating their variance under unequal probability sampling without replacement. Single and two stage sampling designs are considered. Some approximations for the second order inclusion probabilities are also available (sample and population based). A variety of Jackknife variance estimators are implemented. Almost every function is written in C (compiled) code for faster results. The functions incorporate some performance improvements for faster results with large datasets.
Author: Emilio Lopez Escobar [aut, cre, cph] <emilio@numerika.mx>,
Ernesto Barrios Zamudio [ctb] <ebarrios@itam.mx>,
Juan Francisco Munoz Rosas [ctb] <jfmunoz@go.ugr.es>
Maintainer: Emilio Lopez Escobar <emilio@numerika.mx>
Diff between samplingVarEst versions 1.2 dated 2018-09-22 and 1.3 dated 2018-10-02
ChangeLog | 73 +++++++++++++++++++++++++++++ DESCRIPTION | 8 +-- MD5 | 100 ++++++++++++++++++++--------------------- R/Est_Corr_Hajek.r | 2 R/Est_Corr_NHT.r | 4 - R/Est_EmpDistFunc_Hajek.r | 6 +- R/Est_EmpDistFunc_NHT.r | 6 +- R/Est_Mean_Hajek.r | 4 - R/Est_Ratio.r | 2 R/Est_RegCoI_Hajek.r | 2 R/Est_RegCo_Hajek.r | 4 - R/Est_Total_NHT.r | 8 +-- R/Pk_PropNorm_U.R | 6 +- R/Pkl_Hajek_U.R | 22 ++++----- R/Pkl_Hajek_s.R | 22 ++++----- R/VE_EB_HT_Mean_Hajek.r | 2 R/VE_EB_HT_Ratio.r | 14 ++--- R/VE_EB_SYG_Mean_Hajek.r | 2 R/VE_EB_SYG_Ratio.r | 14 ++--- R/VE_HT_Total_NHT.r | 8 +-- R/VE_Hajek_Total_NHT.r | 4 - R/VE_Jk_B_Corr_Hajek.r | 8 +-- R/VE_Jk_B_Mean_Hajek.r | 2 R/VE_Jk_B_Ratio.r | 8 +-- R/VE_Jk_B_RegCoI_Hajek.r | 6 +- R/VE_Jk_B_RegCo_Hajek.r | 8 +-- R/VE_Jk_CBS_HT_Corr_Hajek.r | 10 ++-- R/VE_Jk_CBS_HT_Mean_Hajek.r | 2 R/VE_Jk_CBS_HT_Ratio.r | 10 ++-- R/VE_Jk_CBS_HT_RegCoI_Hajek.r | 10 ++-- R/VE_Jk_CBS_HT_RegCo_Hajek.r | 10 ++-- R/VE_Jk_CBS_SYG_Corr_Hajek.r | 10 ++-- R/VE_Jk_CBS_SYG_Mean_Hajek.r | 2 R/VE_Jk_CBS_SYG_Ratio.r | 10 ++-- R/VE_Jk_CBS_SYG_RegCoI_Hajek.r | 10 ++-- R/VE_Jk_CBS_SYG_RegCo_Hajek.r | 10 ++-- R/VE_Jk_EB_SW2_Corr_Hajek.r | 12 ++-- R/VE_Jk_EB_SW2_Mean_Hajek.r | 2 R/VE_Jk_EB_SW2_Ratio.r | 12 ++-- R/VE_Jk_EB_SW2_RegCoI_Hajek.r | 12 ++-- R/VE_Jk_EB_SW2_RegCo_Hajek.r | 12 ++-- R/VE_Jk_Tukey_Corr_Hajek.r | 4 - R/VE_Jk_Tukey_Corr_NHT.r | 4 - R/VE_Jk_Tukey_Mean_Hajek.r | 2 R/VE_Jk_Tukey_Ratio.r | 4 - R/VE_Jk_Tukey_RegCoI_Hajek.r | 4 - R/VE_Jk_Tukey_RegCo_Hajek.r | 4 - R/VE_Lin_HT_Ratio.r | 8 +-- R/VE_Lin_SYG_Ratio.r | 8 +-- R/VE_SYG_Total_NHT.r | 8 +-- README | 2 51 files changed, 298 insertions(+), 229 deletions(-)
More information about samplingVarEst at CRAN
Permanent link
Title: An S4 Class for Functional Data
Description: S4 classes for univariate and multivariate functional data with
utility functions.
Author: Clara Happ [aut, cre]
Maintainer: Clara Happ <clara.happ@stat.uni-muenchen.de>
Diff between funData versions 1.3 dated 2018-08-09 and 1.3-1 dated 2018-10-02
DESCRIPTION | 10 ++--- MD5 | 54 ++++++++++++++--------------- NEWS.md | 8 ++++ R/coerce.R | 8 ++-- R/funDataClass.R | 18 ++++----- R/funDataMethods.R | 58 ++++++++++++++++---------------- R/get_set.R | 8 ++-- R/plotMethods.R | 44 +++++++++++++++--------- R/simulation.R | 30 ++++++++-------- R/str.R | 6 +-- R/subset.R | 22 ++++++------ R/summary.R | 8 ++-- man/autoplot.funData.Rd | 4 +- man/autoplot.irregFunData.Rd | 6 ++- man/autoplot.multiFunData.Rd | 4 +- man/extractObs-funData-method.Rd | 2 - man/extractObs-irregFunData-method.Rd | 2 - man/extractObs-multiFunData-method.Rd | 2 - man/extractObs.Rd | 13 +++---- man/ggplot.Rd | 3 + man/meanFunction.Rd | 6 +-- man/norm-funData-missing-method.Rd | 2 - man/norm-irregFunData-missing-method.Rd | 5 +- man/norm-multiFunData-missing-method.Rd | 5 +- man/plot.funData.Rd | 2 - man/plot.irregFunData.Rd | 2 - man/plot.multiFunData.Rd | 2 - man/simMultiFunData.Rd | 4 +- 28 files changed, 183 insertions(+), 155 deletions(-)
Title: Companion Animal Population Management
Description: Quantitative analysis to support companion animal population
management. Some functions assist survey sampling tasks (calculate sample
size for simple and complex designs, select sampling units and estimate
population parameters) while others assist the modelling of population
dynamics. For demographic characterizations and population management
evaluations see: "Baquero, et al." (2018),
<doi:10.1016/j.prevetmed.2018.07.006>. For modelling of
population dynamics see: "Baquero et al." (2016),
<doi:10.1016/j.prevetmed.2015.11.009>. For sampling methods
see: "Levy PS & Lemeshow S" (2013), "ISBN-10: 0470040076";
"Lumley" (2010), "ISBN: 978-0-470-28430-8".
Author: Oswaldo Santos Baquero [aut, cre],
Marcos Amaku [ctb],
Fernando Ferreira [ctb]
Maintainer: Oswaldo Santos Baquero <baquero@usp.br>
Diff between capm versions 0.11.0 dated 2017-05-05 and 0.13.5 dated 2018-10-02
capm-0.11.0/capm/R/GraphicInterface.R |only capm-0.11.0/capm/R/city.R |only capm-0.11.0/capm/R/cluster_pilot.R |only capm-0.11.0/capm/R/cluster_sample_animals.R |only capm-0.11.0/capm/R/cluster_sample_animals_lost.R |only capm-0.11.0/capm/R/hh.R |only capm-0.11.0/capm/R/sys_sample.R |only capm-0.11.0/capm/R/sys_sample_animals.R |only capm-0.11.0/capm/R/sys_sample_animals_lost.R |only capm-0.11.0/capm/data/city.rda |only capm-0.11.0/capm/data/cluster_pilot.rda |only capm-0.11.0/capm/data/cluster_sample_animals.rda |only capm-0.11.0/capm/data/cluster_sample_animals_lost.rda |only capm-0.11.0/capm/data/hh.rda |only capm-0.11.0/capm/data/sys_sample.rda |only capm-0.11.0/capm/data/sys_sample_animals.rda |only capm-0.11.0/capm/data/sys_sample_animals_lost.rda |only capm-0.11.0/capm/inst/shinyApps |only capm-0.11.0/capm/man/GraphicInterface.Rd |only capm-0.11.0/capm/man/city.Rd |only capm-0.11.0/capm/man/cluster_pilot.Rd |only capm-0.11.0/capm/man/cluster_sample_animals.Rd |only capm-0.11.0/capm/man/cluster_sample_animals_lost.Rd |only capm-0.11.0/capm/man/hh.Rd |only capm-0.11.0/capm/man/sys_sample.Rd |only capm-0.11.0/capm/man/sys_sample_animals.Rd |only capm-0.11.0/capm/man/sys_sample_animals_lost.Rd |only capm-0.13.5/capm/DESCRIPTION | 31 - capm-0.13.5/capm/MD5 | 145 ++----- capm-0.13.5/capm/NAMESPACE | 52 ++ capm-0.13.5/capm/NEWS | 127 ++++++ capm-0.13.5/capm/R/Calculate2StageSampleSize.R | 30 - capm-0.13.5/capm/R/CalculateGlobalSens.R | 33 - capm-0.13.5/capm/R/CalculateLocalSens.R | 29 - capm-0.13.5/capm/R/CalculatePopChange.R | 88 ++-- capm-0.13.5/capm/R/CalculateSimpleSampleSize.R | 4 capm-0.13.5/capm/R/CalculateStratifiedSampleSize.R | 14 capm-0.13.5/capm/R/DesignSurvey.R | 77 ++- capm-0.13.5/capm/R/FreqTab.R |only capm-0.13.5/capm/R/GetDataIASA.R |only capm-0.13.5/capm/R/MapkmlPSU.R | 57 +- capm-0.13.5/capm/R/PlotGlobalSens.R | 77 +-- capm-0.13.5/capm/R/PlotHHxSpecies.R |only capm-0.13.5/capm/R/PlotImmigrationFlow.R |only capm-0.13.5/capm/R/PlotLocalSens.R | 62 +-- capm-0.13.5/capm/R/PlotModels.R | 158 +++---- capm-0.13.5/capm/R/PlotPopPyramid.R | 247 ++++++------ capm-0.13.5/capm/R/SamplePPS.R | 7 capm-0.13.5/capm/R/SampleSystematic.R | 7 capm-0.13.5/capm/R/SetRanges.R | 22 - capm-0.13.5/capm/R/SolveIASA.R | 367 +++++++++++------- capm-0.13.5/capm/R/SolveSI.R | 10 capm-0.13.5/capm/R/SummarySurvey.R | 51 +- capm-0.13.5/capm/R/capm-package.R | 23 - capm-0.13.5/capm/R/cats.R | 32 - capm-0.13.5/capm/R/cluster_sample.R | 32 - capm-0.13.5/capm/R/dogs.R | 30 - capm-0.13.5/capm/R/psu_ssu.R |only capm-0.13.5/capm/data/cats.rda |binary capm-0.13.5/capm/data/cluster_sample.rda |binary capm-0.13.5/capm/data/dogs.rda |binary capm-0.13.5/capm/data/psu_ssu.rda |only capm-0.13.5/capm/man/Calculate2StageSampleSize.Rd | 25 - capm-0.13.5/capm/man/CalculateGlobalSens.Rd | 33 - capm-0.13.5/capm/man/CalculateLocalSens.Rd | 29 - capm-0.13.5/capm/man/CalculatePopChange.Rd | 34 - capm-0.13.5/capm/man/CalculateSimpleSampleSize.Rd | 4 capm-0.13.5/capm/man/CalculateStratifiedSampleSize.Rd | 4 capm-0.13.5/capm/man/DesignSurvey.Rd | 62 +-- capm-0.13.5/capm/man/FreqTab.Rd |only capm-0.13.5/capm/man/GetDataIASA.Rd |only capm-0.13.5/capm/man/MapkmlPSU.Rd | 41 -- capm-0.13.5/capm/man/PlotGlobalSens.Rd | 40 - capm-0.13.5/capm/man/PlotHHxSpecies.Rd |only capm-0.13.5/capm/man/PlotImmigrationFlow.Rd |only capm-0.13.5/capm/man/PlotLocalSens.Rd | 46 -- capm-0.13.5/capm/man/PlotModels.Rd | 77 +-- capm-0.13.5/capm/man/PlotPopPyramid.Rd | 40 + capm-0.13.5/capm/man/SamplePPS.Rd | 6 capm-0.13.5/capm/man/SampleSystematic.Rd | 6 capm-0.13.5/capm/man/SetRanges.Rd | 22 - capm-0.13.5/capm/man/SolveIASA.Rd | 69 +-- capm-0.13.5/capm/man/SolveSI.Rd | 6 capm-0.13.5/capm/man/SummarySurvey.Rd | 41 -- capm-0.13.5/capm/man/capm-package.Rd | 8 capm-0.13.5/capm/man/cats.Rd | 34 + capm-0.13.5/capm/man/cluster_sample.Rd | 34 - capm-0.13.5/capm/man/dogs.Rd | 32 + capm-0.13.5/capm/man/psu_ssu.Rd |only 89 files changed, 1396 insertions(+), 1109 deletions(-)
Title: Collection of Convenient Functions for Common Statistical
Computations
Description: Collection of convenient functions for common statistical computations,
which are not directly provided by R's base or stats packages.
This package aims at providing, first, shortcuts for statistical
measures, which otherwise could only be calculated with additional
effort (like standard errors or root mean squared errors). Second,
these shortcut functions are generic (if appropriate), and can be
applied not only to vectors, but also to other objects as well
(e.g., the Coefficient of Variation can be computed for vectors,
linear models, or linear mixed models; the r2()-function returns
the r-squared value for 'lm', 'glm', 'merMod' and other model objects).
The focus of most functions lies on summary statistics or fit
measures for regression models, including generalized linear
models, mixed effects models and Bayesian models. However, some
of the functions also deal with other statistical measures,
like Cronbach's Alpha, Cramer's V, Phi etc.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjstats versions 0.17.0 dated 2018-08-20 and 0.17.1 dated 2018-10-02
DESCRIPTION | 14 +- MD5 | 76 +++++++------ NAMESPACE | 17 ++ NEWS.md | 21 +++ R/S3-methods.R | 46 ++++++- R/auto_prior.R | 23 +++ R/eta_sq.R | 6 + R/grpmean.R | 23 +-- R/mediation.R | 44 +++++-- R/mwu.R | 7 + R/overdisp.R | 75 +++++++----- R/pca.R | 1 R/pred_vars.R | 133 +++++++++++++++------- R/r2.R | 52 ++++++-- R/robust.R | 27 +--- R/typical.R | 25 +--- R/weight.R | 92 +++++++++++++-- R/wtd_chisqtest.R |only R/wtd_ttest.R | 91 +++++++++++++++ R/xtab_statistics.R | 2 build/partial.rdb |binary inst/doc/anova-statistics.html | 10 - inst/doc/bayesian-statistics.html | 204 +++++++++++++++++------------------ inst/doc/mixedmodels-statistics.R | 1 inst/doc/mixedmodels-statistics.Rmd | 1 inst/doc/mixedmodels-statistics.html | 29 ++-- man/auto_prior.Rd | 16 ++ man/cod.Rd | 1 man/overdisp.Rd | 26 ++-- man/typical_value.Rd | 8 - man/wtd_sd.Rd | 79 ++++++++++--- man/xtab_statistics.Rd | 2 tests/testthat.R | 6 + tests/testthat/test-anova_stats.R | 70 +++++------- tests/testthat/test-autoprior.R |only tests/testthat/test-equi_test.R |only tests/testthat/test-grpmean.R |only tests/testthat/test-hdi.R |only tests/testthat/test-mcse.R |only tests/testthat/test-neff.R |only tests/testthat/test-tidy_stan.R | 184 +++++++++++-------------------- tests/testthat/test-var_names.R |only vignettes/mixedmodels-statistics.Rmd | 1 43 files changed, 882 insertions(+), 531 deletions(-)
Title: Paleontological and Phylogenetic Analyses of Evolution
Description: Provides tools for transforming, a posteriori time-scaling, and
modifying phylogenies containing extinct (i.e. fossil) lineages. In particular,
most users are interested in the functions timePaleoPhy(), bin_timePaleoPhy(),
cal3TimePaleoPhy() and bin_cal3TimePaleoPhy(), which date cladograms of
fossil taxa using stratigraphic data. This package also contains a large number
of likelihood functions for estimating sampling and diversification rates from
different types of data available from the fossil record (e.g. range data,
occurrence data, etc). paleotree users can also simulate diversification and
sampling in the fossil record using the function simFossilRecord(), which is a
detailed simulator for branching birth-death-sampling processes composed of
discrete taxonomic units arranged in ancestor-descendant relationships. Users
can use simFossilRecord() to simulate diversification in incompletely sampled
fossil records, under various models of morphological differentiation (i.e.
the various patterns by which morphotaxa originate from one another), and
with time-dependent, longevity-dependent and/or diversity-dependent rates of
diversification, extinction and sampling. Additional functions allow users to
translate simulated ancestor-descendant data from simFossilRecord() into standard
time-scaled phylogenies or unscaled cladograms that reflect the relationships
among taxon units.
Author: David W. Bapst, Peter J. Wagner
Maintainer: David W. Bapst <dwbapst@gmail.com>
Diff between paleotree versions 3.1.0 dated 2018-07-03 and 3.1.3 dated 2018-10-02
CHANGELOG | 8 DESCRIPTION | 10 MD5 | 299 ++++++------- NAMESPACE | 4 R/DiversityCurves.R | 260 +++++------ R/RaiaCopesRule.R | 50 +- R/SamplingConv.R | 108 ++-- R/SongZhangDicrano.R | 38 - R/binTimeData.R | 88 ++-- R/branchClasses.R | 56 +- R/cal3TimePaleoPhy.R | 786 ++++++++++++++++++------------------ R/cladogeneticTraitCont.R | 34 - R/communityEcology.R | 131 +++--- R/compareTimescaling.R | 138 +++--- R/constrainParPaleo.R | 90 ++-- R/createMrBayesConstraints.R | 34 - R/createMrBayesTipCalibrations.R | 168 +++---- R/createMrBayesTipDatingNexus.R | 523 ++++++++++++++--------- R/dateNodes.R | 22 - R/degradeTree.R | 90 ++-- R/depthRainbow.R | 14 R/divCurveFossilRecordSim.R | 54 +- R/durationFreq.R | 222 +++++----- R/equation2function.R | 36 - R/exhaustationFunctions.R | 786 ++++++++++++++++++------------------ R/expandTaxonTree.R | 48 +- R/footeValues.R | 126 ++--- R/fourDateFunctions.R | 46 +- R/freqRat.R | 196 ++++---- R/getFixedAgesFromNexus.R | 49 +- R/graptDisparity.R | 46 +- R/graptPBDB.R | 4 R/hiddenFunctions.R | 78 +-- R/horizonSampRate.R | 34 - R/inverseSurv.R | 266 ++++++------ R/isTimeListSequential.R | 12 R/kanto.R | 71 +-- R/macroperforateForam.R | 128 ++--- R/makePBDBtaxonTree.R | 328 +++++++-------- R/minBranchLength.R | 56 +- R/minCharChange.R | 360 ++++++++-------- R/modelMethods.R | 68 +-- R/modifyTerminalBranches.R | 202 ++++----- R/multiDiv.R | 298 ++++++------- R/nearestNeighborDist.R | 22 - R/nodeDates2branchLengths.R | 74 +-- R/obtainDatedPosteriorTreesMrB.R | 196 ++++++-- R/occData2timeList.R | 92 ++-- R/optimPaleo.R | 12 R/paleotree-package.R | 20 R/parentChild2TaxonTree.R | 146 +++--- R/parseNexusFile.R | 74 +-- R/perCapitaRates.R | 128 ++--- R/perfectParsCharTree.R | 30 - R/plotOccData.R | 52 +- R/plotTraitgram.R | 58 +- R/pqr2Ps.R | 24 - R/probAnc.R | 138 +++--- R/resolveTreeChar.R | 302 ++++++------- R/retiolitinae.R | 6 R/reverseList.R | 16 R/rootSplit.R | 6 R/sampleRanges.R | 218 ++++----- R/seqTimeList.R | 84 +-- R/setRootAge.R | 55 +- R/simFossilRecord.R | 511 +++++++++++------------ R/simFossilRecordInternal.R | 428 +++++++++---------- R/simFossilRecordMethods.R | 153 ++++--- R/taxa2cladogram.R | 86 +-- R/taxa2phylo.R | 206 ++++----- R/taxonSortPBDBocc.R | 302 ++++++------- R/taxonTable2TaxonTree.R | 92 ++-- R/termTaxa.R | 148 +++--- R/testEdgeMat.R | 259 +++++++---- R/timeLadderTree.R | 84 +-- R/timePaleoPhy.R | 440 ++++++++++---------- R/timeSliceTree.R | 66 +-- R/treeContradiction.R | 72 +-- R/twoWayEcologyCluster.R |only R/unitLengthTree.R | 6 R/writeSimpleSumtNexus.R | 38 - README.md | 32 + man/DiversityCurves.Rd | 46 +- man/RaiaCopesRule.Rd | 50 +- man/SamplingConv.Rd | 12 man/SongZhangDicrano.Rd | 38 - man/binTimeData.Rd | 26 - man/branchClasses.Rd | 10 man/cal3TimePaleoPhy.Rd | 122 ++--- man/cladogeneticTraitCont.Rd | 16 man/communityEcology.Rd | 44 +- man/compareTimescaling.Rd | 22 - man/constrainParPaleo.Rd | 12 man/createMrBayesConstraints.Rd | 6 man/createMrBayesTipCalibrations.Rd | 16 man/createMrBayesTipDatingNexus.Rd | 82 ++- man/dateNodes.Rd | 10 man/degradeTree.Rd | 22 - man/divCurveFossilRecordSim.Rd | 4 man/durationFreq.Rd | 30 - man/equation2function.Rd | 12 man/exhaustionFunctions.Rd | 34 - man/expandTaxonTree.Rd | 6 man/footeValues.Rd | 12 man/freqRat.Rd | 156 +++---- man/graptDisparity.Rd | 46 +- man/graptPBDB.Rd | 4 man/horizonSampRate.Rd | 8 man/inverseSurv.Rd | 30 - man/kanto.Rd | 71 +-- man/macroperforateForam.Rd | 128 ++--- man/makePBDBtaxonTree.Rd | 116 ++--- man/minBranchLength.Rd | 22 - man/minCharChange.Rd | 104 ++-- man/modelMethods.Rd | 12 man/modifyTerminalBranches.Rd | 72 +-- man/multiDiv.Rd | 46 +- man/nearestNeighborDist.Rd | 10 man/nodeDates2branchLengths.Rd | 46 +- man/obtainDatedPosteriorTreesMrB.Rd | 78 ++- man/occData2timeList.Rd | 18 man/optimPaleo.Rd | 4 man/paleotree-package.Rd | 18 man/parentChild2taxonTree.Rd | 28 - man/perCapitaRates.Rd | 28 - man/perfectParsCharTree.Rd | 6 man/plotOccData.Rd | 4 man/plotTraitgram.Rd | 6 man/pqr2Ps.Rd | 4 man/probAnc.Rd | 20 man/resolveTreeChar.Rd | 84 +-- man/retiolitinae.Rd | 6 man/reverseList.Rd | 6 man/rootSplit.Rd | 2 man/sampleRanges.Rd | 50 +- man/seqTimeList.Rd | 16 man/setRootAge.Rd | 21 man/simFossilRecord.Rd | 331 +++++++-------- man/simFossilRecordMethods.Rd | 42 + man/taxa2cladogram.Rd | 24 - man/taxa2phylo.Rd | 22 - man/taxonSortPBDBocc.Rd | 90 ++-- man/taxonTable2taxonTree.Rd | 8 man/termTaxa.Rd | 36 - man/testEdgeMat.Rd | 24 - man/timeLadderTree.Rd | 24 - man/timeList2fourDate.Rd | 4 man/timePaleoPhy.Rd | 110 ++--- man/timeSliceTree.Rd | 20 man/treeContradiction.Rd | 27 - man/twoWayEcologyCluster.Rd |only tests/testthat.R |only 152 files changed, 7103 insertions(+), 6702 deletions(-)
Title: Compile and Preview Snippets of 'LaTeX' in 'RStudio'
Description: Compile and preview snippets of 'LaTeX'. Can be used directly from the R console, from 'RStudio',
in Shiny apps and R Markdown documents. Must have 'pdflatex' or 'xelatex' or 'lualatex' in 'PATH'.
Author: Jonathan Sidi [aut, cre],
Daniel Polhamus [aut]
Maintainer: Jonathan Sidi <yonis@metrumrg.com>
Diff between texPreview versions 1.1.5 dated 2018-08-15 and 1.2.2 dated 2018-10-02
texPreview-1.1.5/texPreview/R/defaults.R |only texPreview-1.1.5/texPreview/inst/hex.png |only texPreview-1.2.2/texPreview/DESCRIPTION | 17 texPreview-1.2.2/texPreview/MD5 | 54 ++ texPreview-1.2.2/texPreview/NAMESPACE | 6 texPreview-1.2.2/texPreview/R/build_lines.R |only texPreview-1.2.2/texPreview/R/opts.R |only texPreview-1.2.2/texPreview/R/opts_complete.R |only texPreview-1.2.2/texPreview/R/texPreview.R | 181 +--------- texPreview-1.2.2/texPreview/R/tex_build.R |only texPreview-1.2.2/texPreview/R/tex_cleanup.R |only texPreview-1.2.2/texPreview/R/tex_dir_setup.R |only texPreview-1.2.2/texPreview/R/tex_image.R |only texPreview-1.2.2/texPreview/R/tex_return.R |only texPreview-1.2.2/texPreview/R/tex_viewer.R |only texPreview-1.2.2/texPreview/README.md | 3 texPreview-1.2.2/texPreview/build |only texPreview-1.2.2/texPreview/inst/doc |only texPreview-1.2.2/texPreview/inst/examples/rmarkdown/beamer/beamer.pdf |binary texPreview-1.2.2/texPreview/inst/examples/rmarkdown/html/htmlOutput.Rmd | 35 - texPreview-1.2.2/texPreview/inst/examples/rmarkdown/html/htmlOutput.html |only texPreview-1.2.2/texPreview/inst/examples/rmarkdown/html/testCarousel.Rmd | 35 - texPreview-1.2.2/texPreview/inst/examples/rmarkdown/html/testCarousel.html |only texPreview-1.2.2/texPreview/inst/examples/rmarkdown/html/test_files |only texPreview-1.2.2/texPreview/inst/examples/rmarkdown/ioslides/ioslides.Rmd | 37 -- texPreview-1.2.2/texPreview/inst/examples/rmarkdown/ioslides/ioslides.html |only texPreview-1.2.2/texPreview/inst/examples/rmarkdown/pdf/pdfOutput.Rmd | 27 - texPreview-1.2.2/texPreview/inst/examples/rmarkdown/pdf/pdfOutput.pdf |only texPreview-1.2.2/texPreview/inst/tmpl.tex |only texPreview-1.2.2/texPreview/man/buildUsepackage.Rd | 3 texPreview-1.2.2/texPreview/man/texPreview.Rd | 8 texPreview-1.2.2/texPreview/man/tex_opts.Rd | 2 texPreview-1.2.2/texPreview/tests/README.md | 62 +-- texPreview-1.2.2/texPreview/tests/testthat/test-tex.R | 18 texPreview-1.2.2/texPreview/tests/testthat/test-utilites.R | 2 texPreview-1.2.2/texPreview/tests/testthat/tex |only texPreview-1.2.2/texPreview/vignettes |only 37 files changed, 161 insertions(+), 329 deletions(-)
Title: Weighting and Estimation for Panel Data with Non-Response
Description: Functions to calculate weights, estimates of changes and corresponding variance estimates for panel data with non-response.
Author: Øyvind Langsrud
Maintainer: Oyvind Langsrud <oyl@ssb.no>
Diff between CalibrateSSB versions 1.0 dated 2016-04-28 and 1.1 dated 2018-10-02
DESCRIPTION | 15 +- MD5 | 42 +++-- NAMESPACE | 41 ++++- R/AkuData.R | 41 +++++ R/CalibratePackageReGenesees.r |only R/CalibrateSSB-package.R |only R/CalibrateSSB.R | 295 +++++++++++++++++++++++++++++++++++++---- R/PanelEstimation.R | 166 +++++++++++++++++++++-- R/calSSB.R |only R/calibratePackageSurvey.R | 14 + R/lagVekter.R | 14 + R/my_ginv.R | 16 ++ R/setAndGetTotal.R |only README.md |only man/AkuData.Rd | 31 +--- man/CalSSBobj.Rd |only man/CalibrateSSB-package.Rd | 53 +++---- man/CalibrateSSB.Rd | 166 ++++++++++++++++------- man/CalibrateSSBpanel.Rd |only man/CrossStrata.Rd | 40 ++--- man/LinCombMatrix.Rd | 51 ++++--- man/MatchVarNames.Rd |only man/OrderedVarNames.Rd |only man/PanelEstimation.Rd | 75 +++++----- man/WideFromCalibrate.Rd | 44 +++--- man/print.calSSB.Rd |only man/print.calSSBwide.Rd |only man/testDataBasis.Rd |only 28 files changed, 849 insertions(+), 255 deletions(-)
Title: 'Utilities of Institute of Data Analyses and Process Design
(www.zhaw.ch/idp)'
Description: Different high-level graphics functions for displaying large datasets, displaying circular data in a very flexible way, finding local maxima, brewing color ramps, drawing nice arrows, zooming 2D-plots, creating figures with differently colored margin and plot region. In addition, the package contains auxiliary functions for data manipulation like omitting observations with irregular values or selecting data by logical vectors, which include NAs. Other functions are especially useful in spectroscopy and analyses of environmental data: robust baseline fitting, finding peaks in spectra.
Author: Rene Locher [aut, cre],
Andreas Ruckstuhl [ctb]
Maintainer: Rene Locher <rene.locher@zhaw.ch>
Diff between IDPmisc versions 1.1.17 dated 2012-11-02 and 1.1.18 dated 2018-10-02
ChangeLog | 11 ++ DESCRIPTION | 37 +++----- MD5 | 35 +++---- NAMESPACE | 24 ++++- R/iplot.R | 108 +++++++++++------------ R/rfbaseline.R | 224 +++++++++++++++++++++++-------------------------- data/MS.rda |binary man/IDPmisc-package.Rd | 20 +--- man/draw.leg.Rd | 25 +++-- man/ilagplot.Rd | 14 +-- man/ipairs.Rd | 39 ++++---- man/ipanel.smooth.Rd | 17 +-- man/iplot.Rd | 23 ++--- man/iplotLegend.Rd | 10 +- man/longtsPlot.Rd | 14 +-- man/peaks.Rd | 13 -- man/plot.rose.Rd | 12 +- src/init.c |only src/lwreg.c | 53 +++++------ 19 files changed, 342 insertions(+), 337 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-09-17 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-19 1.6
Title: Sensus Analytics
Description: Provides access and analytic functions for Sensus data.
Author: Matthew S. Gerber
Maintainer: Matthew S. Gerber <gerber.matthew@gmail.com>
Diff between SensusR versions 2.2.0 dated 2017-07-11 and 2.3.0 dated 2018-10-02
SensusR-2.2.0/SensusR/inst/extdata/example_data |only SensusR-2.2.0/SensusR/man/sensus.decompress.json.Rd |only SensusR-2.2.0/SensusR/man/sensus.plot.data.frequency.by.day.Rd |only SensusR-2.2.0/SensusR/man/sensus.read.json.Rd |only SensusR-2.3.0/SensusR/DESCRIPTION | 12 SensusR-2.3.0/SensusR/MD5 | 146 +---- SensusR-2.3.0/SensusR/NEWS.md | 3 SensusR-2.3.0/SensusR/R/SensusR.R | 289 ++++++---- SensusR-2.3.0/SensusR/inst/extdata/example-data |only SensusR-2.3.0/SensusR/man/SensusR.Rd | 2 SensusR-2.3.0/SensusR/man/plot.AccelerometerDatum.Rd | 4 SensusR-2.3.0/SensusR/man/plot.AltitudeDatum.Rd | 4 SensusR-2.3.0/SensusR/man/plot.BatteryDatum.Rd | 4 SensusR-2.3.0/SensusR/man/plot.CellTowerDatum.Rd | 4 SensusR-2.3.0/SensusR/man/plot.CompassDatum.Rd | 4 SensusR-2.3.0/SensusR/man/plot.LightDatum.Rd | 4 SensusR-2.3.0/SensusR/man/plot.LocationDatum.Rd | 6 SensusR-2.3.0/SensusR/man/plot.ScreenDatum.Rd | 4 SensusR-2.3.0/SensusR/man/plot.SoundDatum.Rd | 4 SensusR-2.3.0/SensusR/man/plot.SpeedDatum.Rd | 4 SensusR-2.3.0/SensusR/man/plot.TelephonyDatum.Rd | 4 SensusR-2.3.0/SensusR/man/plot.WlanDatum.Rd | 4 SensusR-2.3.0/SensusR/man/sensus.decompress.gz.files.Rd |only SensusR-2.3.0/SensusR/man/sensus.decrypt.bin.files.Rd | 9 SensusR-2.3.0/SensusR/man/sensus.get.all.timestamp.lags.Rd | 4 SensusR-2.3.0/SensusR/man/sensus.get.timestamp.lags.Rd | 4 SensusR-2.3.0/SensusR/man/sensus.get.unique.device.ids.Rd |only SensusR-2.3.0/SensusR/man/sensus.list.activities.Rd |only SensusR-2.3.0/SensusR/man/sensus.list.aws.s3.buckets.Rd |only SensusR-2.3.0/SensusR/man/sensus.plot.lag.cdf.Rd | 4 SensusR-2.3.0/SensusR/man/sensus.read.json.files.Rd |only SensusR-2.3.0/SensusR/man/sensus.remove.device.id.Rd | 4 SensusR-2.3.0/SensusR/man/sensus.sync.from.aws.s3.Rd | 4 SensusR-2.3.0/SensusR/man/sensus.write.csv.files.Rd | 6 SensusR-2.3.0/SensusR/man/sensus.write.rdata.files.Rd | 6 35 files changed, 282 insertions(+), 261 deletions(-)