Title: Optimal Stratification of Sampling Frames for Multipurpose
Sampling Surveys
Description: In the field of stratified sampling design, this package
offers an approach for the determination of the best
stratification of a sampling frame, the one that ensures the
minimum sample cost under the condition to satisfy precision
constraints in a multivariate and multidomain case. This
approach is based on the use of the genetic algorithm: each
solution (i.e. a particular partition in strata of the sampling
frame) is considered as an individual in a population; the
fitness of all individuals is evaluated applying the
Bethel-Chromy algorithm to calculate the sampling size
satisfying precision constraints on the target estimates.
Functions in the package allows to: (a) analyse the obtained
results of the optimisation step; (b) assign the new strata
labels to the sampling frame; (c) select a sample from the new
frame accordingly to the best allocation.
Functions for the execution of the genetic algorithm are a modified
version of the functions in the 'genalg' package.
Author: Giulio Barcaroli, Marco Ballin, Hanjo Odendaal, Daniela Pagliuca, Egon Willighagen,
Diego Zardetto
Maintainer: Giulio Barcaroli <gbarcaroli@gmail.com>
Diff between SamplingStrata versions 1.2 dated 2018-02-18 and 1.3 dated 2018-10-07
SamplingStrata-1.2/SamplingStrata/R/aggrStrata.r |only SamplingStrata-1.2/SamplingStrata/R/buildStrataDF.R |only SamplingStrata-1.2/SamplingStrata/inst/doc/SamplingStrataVignette.R |only SamplingStrata-1.2/SamplingStrata/inst/doc/SamplingStrataVignette.Rnw |only SamplingStrata-1.2/SamplingStrata/inst/doc/SamplingStrataVignette.pdf |only SamplingStrata-1.2/SamplingStrata/inst/doc/tuneParameters.pdf |only SamplingStrata-1.2/SamplingStrata/vignettes/SamplingStrataVignette.Rnw |only SamplingStrata-1.3/SamplingStrata/DESCRIPTION | 17 SamplingStrata-1.3/SamplingStrata/MD5 | 107 +- SamplingStrata-1.3/SamplingStrata/NAMESPACE | 12 SamplingStrata-1.3/SamplingStrata/NEWS | 135 ++- SamplingStrata-1.3/SamplingStrata/R/KmeansSolution.R |only SamplingStrata-1.3/SamplingStrata/R/adjustSize.R | 4 SamplingStrata-1.3/SamplingStrata/R/aggrStrata_model.r |only SamplingStrata-1.3/SamplingStrata/R/buildStrataDF_model.R |only SamplingStrata-1.3/SamplingStrata/R/checkInput.R | 141 +-- SamplingStrata-1.3/SamplingStrata/R/evalSolution.r | 81 +- SamplingStrata-1.3/SamplingStrata/R/optimizeStrata.R | 390 ++++++---- SamplingStrata-1.3/SamplingStrata/R/optimizeStrata_pbapply.R |only SamplingStrata-1.3/SamplingStrata/R/selectSample.R | 4 SamplingStrata-1.3/SamplingStrata/R/selectSampleSytematic.R |only SamplingStrata-1.3/SamplingStrata/R/strataGenalg.R | 39 - SamplingStrata-1.3/SamplingStrata/R/tuneParameters.r | 32 SamplingStrata-1.3/SamplingStrata/build/vignette.rds |binary SamplingStrata-1.3/SamplingStrata/data/nations.rda |only SamplingStrata-1.3/SamplingStrata/inst/doc/SamplingStrata.R |only SamplingStrata-1.3/SamplingStrata/inst/doc/SamplingStrata.Rmd |only SamplingStrata-1.3/SamplingStrata/inst/doc/SamplingStrata.html |only SamplingStrata-1.3/SamplingStrata/man/KmeansSolution.Rd |only SamplingStrata-1.3/SamplingStrata/man/adjustSize.Rd | 25 SamplingStrata-1.3/SamplingStrata/man/bethel.Rd | 6 SamplingStrata-1.3/SamplingStrata/man/buildFrameDF.Rd | 17 SamplingStrata-1.3/SamplingStrata/man/buildStrataDF.Rd | 59 + SamplingStrata-1.3/SamplingStrata/man/checkInput.Rd | 4 SamplingStrata-1.3/SamplingStrata/man/errors.Rd | 2 SamplingStrata-1.3/SamplingStrata/man/evalSolution.Rd | 73 - SamplingStrata-1.3/SamplingStrata/man/nations.Rd |only SamplingStrata-1.3/SamplingStrata/man/optimizeStrata.Rd | 98 -- SamplingStrata-1.3/SamplingStrata/man/plotSamprate.Rd | 19 SamplingStrata-1.3/SamplingStrata/man/selectSample.Rd | 37 SamplingStrata-1.3/SamplingStrata/man/selectSampleSystematic.Rd |only SamplingStrata-1.3/SamplingStrata/man/tuneParameters.Rd | 21 SamplingStrata-1.3/SamplingStrata/man/updateFrame.Rd | 16 SamplingStrata-1.3/SamplingStrata/man/updateStrata.Rd | 46 - SamplingStrata-1.3/SamplingStrata/man/var.bin.Rd | 2 SamplingStrata-1.3/SamplingStrata/vignettes/SamplingStrata.Rmd |only SamplingStrata-1.3/SamplingStrata/vignettes/SamplingStrata.bib | 28 SamplingStrata-1.3/SamplingStrata/vignettes/output |only SamplingStrata-1.3/SamplingStrata/vignettes/simulation |only SamplingStrata-1.3/SamplingStrata/vignettes/vignette.RData |only 50 files changed, 802 insertions(+), 613 deletions(-)
More information about SamplingStrata at CRAN
Permanent link
Title: Interface to the 'HDF5' Binary Data Format
Description: 'HDF5' is a data model, library and file format for storing
and managing large amounts of data. This package provides a nearly
feature complete, object oriented wrapper for the 'HDF5' API
<https://support.hdfgroup.org/HDF5/doc/RM/RM_H5Front.html> using R6 classes.
Additionally, functionality is added so that 'HDF5' objects behave very
similar to their corresponding R counterparts.
Author: Holger Hoefling [aut, cre],
Mario Annau [aut],
Novartis Institute for BioMedical Research (NIBR) [cph]
Maintainer: Holger Hoefling <hhoeflin@gmail.com>
Diff between hdf5r versions 1.0.0 dated 2017-10-25 and 1.0.1 dated 2018-10-07
DESCRIPTION | 15 + MD5 | 331 +++++++++++++++++++++++++++++++------- NAMESPACE | 2 NEWS.md | 7 R/Common_functions.R | 8 R/H5constants.R | 4 R/Helper_functions.R | 12 - R/Misc.R | 1 R/R6Classes_H5D.R | 5 R/adapt_during_onLoad.R |only R/globalVariables.R | 1 R/h5wrapper.R | 36 ++-- R/high_level_UI.R | 22 ++ R/zzz.R | 3 build/vignette.rds |binary configure | 74 +++++++- configure.ac | 29 +-- inst/CWrappers_1.10.2 |only inst/CWrappers_1.10.3 |only inst/doc/hdf5r.html | 76 ++++---- man/H5D-class.Rd | 7 man/H5File-class.Rd | 5 man/H5Group-class.Rd | 5 man/H5T-class.Rd | 5 man/h5-wrapper.Rd | 3 man/list-groups-datasets.Rd | 13 + src/1_10_0/HelperStructs.h | 5 src/1_10_0/Wrapper_auto_H5A.c | 16 - src/1_10_0/Wrapper_auto_H5A.h | 4 src/1_10_0/Wrapper_auto_H5D.c | 24 +- src/1_10_0/Wrapper_auto_H5D.h | 4 src/1_10_0/Wrapper_auto_H5G.c | 16 - src/1_10_0/Wrapper_auto_H5G.h | 4 src/1_10_0/Wrapper_auto_H5P.c | 16 - src/1_10_0/Wrapper_auto_H5P.h | 4 src/1_10_0/Wrapper_auto_H5T.c | 16 - src/1_10_0/Wrapper_auto_H5T.h | 4 src/1_10_0/datatype_export.c | 293 ++++++++++++++++----------------- src/1_10_0/datatype_export.h | 56 +++--- src/1_10_0/export_auto.h | 82 ++++----- src/1_10_2 |only src/1_10_3 |only src/1_8_12/HelperStructs.h | 5 src/1_8_12/datatype_export.c | 7 src/1_8_12/datatype_export.h | 2 src/1_8_14/HelperStructs.h | 5 src/1_8_14/datatype_export.c | 7 src/1_8_14/datatype_export.h | 2 src/1_8_16/HelperStructs.h | 5 src/1_8_16/datatype_export.c | 7 src/1_8_16/datatype_export.h | 2 src/H5ls.c | 39 ++-- src/Makevars.in | 2 src/Makevars.win | 2 src/convert.c | 9 - tests/testthat/test-h5a.R | 4 tests/testthat/test-print.R | 8 tests/testthat/test-zzz-DataSet.R | 4 tests/testthat/test-zzz-H5Group.R | 31 +++ 59 files changed, 884 insertions(+), 465 deletions(-)
Title: A Modular Platform for Reproducible Modeling of Species Niches
and Distributions
Description: The 'shiny' application 'wallace' is a modular platform for reproducible modeling of species niches and distributions. 'wallace' guides users through a complete analysis, from the acquisition of species occurrence and environmental data to visualizing model predictions on an interactive map, thus bundling complex workflows into a single, streamlined interface.
Author: Jamie M. Kass [aut, cre],
Gonzalo E. Pinilla-Buitrago [aut],
Bruno Vilela [aut],
Matthew E. Aiello-Lammens [aut],
Robert Muscarella [aut],
Cory Merow [aut],
Robert P. Anderson [aut]
Maintainer: Jamie M. Kass <jkass@gradcenter.cuny.edu>
Diff between wallace versions 1.0.5 dated 2018-06-22 and 1.0.6 dated 2018-10-07
wallace-1.0.5/wallace/inst/shiny/Rmd/gtext_comp1.html |only wallace-1.0.5/wallace/tests |only wallace-1.0.6/wallace/DESCRIPTION | 19 wallace-1.0.6/wallace/MD5 | 121 ++--- wallace-1.0.6/wallace/NEWS.md | 131 +++--- wallace-1.0.6/wallace/R/wallace-package.R | 8 wallace-1.0.6/wallace/README.md | 6 wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp1.Rmd | 2 wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp1_dbOccs.Rmd | 8 wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp1_userOccs.Rmd | 2 wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp2.Rmd | 4 wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp2_removeByID.Rmd | 3 wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp2_selectOccsOnMap.Rmd | 3 wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp2_spatialThin.Rmd | 6 wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp3.Rmd | 5 wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp3_userEnvs.Rmd | 2 wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp3_worldclim.Rmd | 6 wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp4.Rmd | 10 wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp4_backg.Rmd | 16 wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp4_userBg.Rmd | 2 wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp5.Rmd | 4 wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp5_spatial.Rmd | 4 wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp6.Rmd | 21 - wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp6_bioclim.Rmd | 4 wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp6_maxent.Rmd | 16 wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp7.Rmd | 2 wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp7_bcPlots.Rmd | 6 wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp7_map.Rmd | 6 wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp7_mxEvalPlots.Rmd | 6 wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp7_respCurves.Rmd | 4 wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp8.Rmd | 4 wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp8_mess.Rmd | 4 wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp8_pjArea.Rmd | 4 wallace-1.0.6/wallace/inst/shiny/Rmd/gtext_comp8_pjTime.Rmd | 4 wallace-1.0.6/wallace/inst/shiny/Rmd/text_about.Rmd | 26 + wallace-1.0.6/wallace/inst/shiny/Rmd/text_intro.Rmd | 168 ++++---- wallace-1.0.6/wallace/inst/shiny/Rmd/text_intro_tab.Rmd | 2 wallace-1.0.6/wallace/inst/shiny/Rmd/userReport.Rmd | 203 ++++++++-- wallace-1.0.6/wallace/inst/shiny/funcs/functions.R | 92 +++- wallace-1.0.6/wallace/inst/shiny/modules/mod_c1_queryDB.R | 2 wallace-1.0.6/wallace/inst/shiny/modules/mod_c1_userOccs.R | 4 wallace-1.0.6/wallace/inst/shiny/modules/mod_c3_worldclim.R | 6 wallace-1.0.6/wallace/inst/shiny/modules/mod_c4_userBgExtent.R | 1 wallace-1.0.6/wallace/inst/shiny/modules/mod_c6_maxent.R | 77 ++- wallace-1.0.6/wallace/inst/shiny/modules/mod_c7_mapPredsMaxent.R | 32 + wallace-1.0.6/wallace/inst/shiny/modules/mod_c7_mxEvalPlots.R | 2 wallace-1.0.6/wallace/inst/shiny/modules/mod_c7_respPlots.R | 45 +- wallace-1.0.6/wallace/inst/shiny/modules/mod_c8_projectArea.R | 30 + wallace-1.0.6/wallace/inst/shiny/modules/mod_c8_projectTime.R | 29 + wallace-1.0.6/wallace/inst/shiny/server.R | 180 ++++++-- wallace-1.0.6/wallace/inst/shiny/ui.R | 34 - wallace-1.0.6/wallace/inst/shiny/www/img/cory.png |only wallace-1.0.6/wallace/inst/shiny/www/img/gonzalo.png |only wallace-1.0.6/wallace/inst/shiny/www/img/sarah.png |only wallace-1.0.6/wallace/inst/shiny/www/img/valentina.png |only wallace-1.0.6/wallace/man/run_wallace.Rd | 2 wallace-1.0.6/wallace/man/wallace-package.Rd | 3 57 files changed, 906 insertions(+), 475 deletions(-)
Title: C++ Header Files for Stan
Description: The C++ header files of the Stan project are provided by this package, but it contains no R code or function documentation. There is a shared object containing part of the 'CVODES' library, but it is not accessible from R. 'StanHeaders' is only useful for developers who want to utilize the 'LinkingTo' directive of their package's DESCRIPTION file to build on the Stan library without incurring unnecessary dependencies. The Stan project develops a probabilistic programming language that implements full or approximate Bayesian statistical inference via Markov Chain Monte Carlo or 'variational' methods and implements (optionally penalized) maximum likelihood estimation via optimization. The Stan library includes an advanced automatic differentiation scheme, 'templated' statistical and linear algebra functions that can handle the automatically 'differentiable' scalar types (and doubles, 'ints', etc.), and a parser for the Stan language. The 'rstan' package provides user-facing R functions to parse, compile, test, estimate, and analyze Stan models.
Author: Ben Goodrich [cre, aut],
Joshua Pritikin [ctb],
Andrew Gelman [aut],
Bob Carpenter [aut],
Matt Hoffman [aut],
Daniel Lee [aut],
Michael Betancourt [aut],
Marcus Brubaker [aut],
Jiqiang Guo [aut],
Peter Li [aut],
Allen Riddell [aut],
Marco Inacio [aut],
Mitzi Morris [aut],
Jeffrey Arnold [aut],
Rob Goedman [aut],
Brian Lau [aut],
Rob Trangucci [aut],
Jonah Gabry [aut],
Alp Kucukelbir [aut],
Robert Grant [aut],
Dustin Tran [aut],
Michael Malecki [aut],
Yuanjun Gao [aut],
Trustees of Columbia University [cph],
Lawrence Livermore National Security [cph] (CVODES),
The Regents of the University of California [cph] (CVODES),
Southern Methodist University [cph] (CVODES)
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Diff between StanHeaders versions 2.17.2 dated 2018-01-20 and 2.18.0 dated 2018-10-07
StanHeaders-2.17.2/StanHeaders/inst/include/cvodes/cvodes_band.h |only StanHeaders-2.17.2/StanHeaders/inst/include/cvodes/cvodes_dense.h |only StanHeaders-2.17.2/StanHeaders/inst/include/cvodes/cvodes_klu.h |only StanHeaders-2.17.2/StanHeaders/inst/include/cvodes/cvodes_lapack.h |only StanHeaders-2.17.2/StanHeaders/inst/include/cvodes/cvodes_sparse.h |only StanHeaders-2.17.2/StanHeaders/inst/include/cvodes/cvodes_spbcgs.h |only StanHeaders-2.17.2/StanHeaders/inst/include/cvodes/cvodes_spgmr.h |only StanHeaders-2.17.2/StanHeaders/inst/include/cvodes/cvodes_sptfqmr.h |only StanHeaders-2.17.2/StanHeaders/inst/include/cvodes/cvodes_superlumt.h |only StanHeaders-2.17.2/StanHeaders/inst/include/src/stan/lang/ast/node/assignment.hpp |only StanHeaders-2.17.2/StanHeaders/inst/include/src/stan/lang/ast/node/assignment_def.hpp |only StanHeaders-2.17.2/StanHeaders/inst/include/src/stan/lang/ast/node/compound_assignment.hpp |only StanHeaders-2.17.2/StanHeaders/inst/include/src/stan/lang/ast/node/compound_assignment_def.hpp |only StanHeaders-2.17.2/StanHeaders/inst/include/src/stan/lang/generator/generate_rng_rcpp_helper.hpp |only StanHeaders-2.17.2/StanHeaders/inst/include/stan/math/rev/arr/fun/decouple_ode_states.hpp |only StanHeaders-2.17.2/StanHeaders/inst/include/stan/math/rev/mat/functor/ode_system.hpp |only StanHeaders-2.17.2/StanHeaders/man |only StanHeaders-2.17.2/StanHeaders/src/cvodes/include |only StanHeaders-2.17.2/StanHeaders/src/cvodes/src |only StanHeaders-2.18.0/StanHeaders/DESCRIPTION | 15 StanHeaders-2.18.0/StanHeaders/MD5 | 2920 +++++----- StanHeaders-2.18.0/StanHeaders/build |only StanHeaders-2.18.0/StanHeaders/inst/CITATION | 6 StanHeaders-2.18.0/StanHeaders/inst/doc |only StanHeaders-2.18.0/StanHeaders/inst/include/cvodes/cvodes.h | 14 StanHeaders-2.18.0/StanHeaders/inst/include/cvodes/cvodes_bandpre.h | 305 - StanHeaders-2.18.0/StanHeaders/inst/include/cvodes/cvodes_bbdpre.h | 576 - StanHeaders-2.18.0/StanHeaders/inst/include/cvodes/cvodes_diag.h | 3 StanHeaders-2.18.0/StanHeaders/inst/include/cvodes/cvodes_direct.h | 589 -- StanHeaders-2.18.0/StanHeaders/inst/include/cvodes/cvodes_spils.h | 888 +-- StanHeaders-2.18.0/StanHeaders/inst/include/idas |only StanHeaders-2.18.0/StanHeaders/inst/include/nvector/cuda |only StanHeaders-2.18.0/StanHeaders/inst/include/nvector/nvector_cuda.h |only StanHeaders-2.18.0/StanHeaders/inst/include/nvector/nvector_openmp.h | 34 StanHeaders-2.18.0/StanHeaders/inst/include/nvector/nvector_parallel.h | 67 StanHeaders-2.18.0/StanHeaders/inst/include/nvector/nvector_parhyp.h | 47 StanHeaders-2.18.0/StanHeaders/inst/include/nvector/nvector_petsc.h | 50 StanHeaders-2.18.0/StanHeaders/inst/include/nvector/nvector_pthreads.h | 38 StanHeaders-2.18.0/StanHeaders/inst/include/nvector/nvector_raja.h |only StanHeaders-2.18.0/StanHeaders/inst/include/nvector/nvector_serial.h | 34 StanHeaders-2.18.0/StanHeaders/inst/include/nvector/raja |only StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/io/program_reader.hpp | 18 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast.hpp | 16 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/base_expr_type.hpp | 233 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/base_expr_type_def.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/double_type.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/expr_type.hpp | 11 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/expr_type_def.hpp | 35 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/fun/generate_expression.hpp | 10 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/fun/has_non_param_var_vis.hpp | 9 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/fun/has_non_param_var_vis_def.hpp | 7 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/fun/has_var_vis.hpp | 46 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/fun/has_var_vis_def.hpp | 8 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/fun/indexed_type.hpp | 2 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/fun/indexed_type_def.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/fun/infer_type_indexing_def.hpp | 13 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/fun/is_assignable_def.hpp | 6 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/fun/is_nil_vis.hpp | 36 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/fun/is_nil_vis_def.hpp | 4 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/fun/is_no_op_statement_vis.hpp | 20 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/fun/is_no_op_statement_vis_def.hpp | 19 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/fun/print_scope_def.hpp | 2 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/fun/promote_primitive_def.hpp | 2 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/fun/returns_type_def.hpp | 2 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/fun/returns_type_vis.hpp | 20 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/fun/returns_type_vis_def.hpp | 30 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/fun/var_occurs_vis.hpp | 10 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/fun/var_occurs_vis_def.hpp | 4 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/fun/write_base_expr_type_def.hpp | 26 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/ill_formed_type.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/int_type.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/matrix_type.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/assgn.hpp | 25 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/assgn_def.hpp | 9 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/cholesky_corr_var_decl_def.hpp | 4 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/cholesky_factor_var_decl_def.hpp | 4 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/corr_matrix_var_decl_def.hpp | 5 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/cov_matrix_var_decl_def.hpp | 5 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/double_literal_def.hpp | 4 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/double_var_decl_def.hpp | 4 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/expression.hpp | 5 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/expression_def.hpp | 9 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/expression_type_vis.hpp | 2 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/expression_type_vis_def.hpp | 17 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/for_array_statement.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/for_array_statement_def.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/for_matrix_statement.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/for_matrix_statement_def.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/fun_def.hpp | 2 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/int_literal_def.hpp | 4 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/int_var_decl_def.hpp | 4 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/map_rect.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/map_rect_def.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/matrix_var_decl_def.hpp | 5 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/ordered_var_decl_def.hpp | 4 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/positive_ordered_var_decl_def.hpp | 4 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/row_vector_var_decl_def.hpp | 6 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/simplex_var_decl_def.hpp | 4 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/statement.hpp | 24 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/statement_def.hpp | 8 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/unit_vector_var_decl_def.hpp | 5 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/node/vector_var_decl_def.hpp | 4 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/origin_block.hpp | 5 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/row_vector_type.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/scope.hpp | 10 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/scope_def.hpp | 6 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/sigs/function_arg_type.hpp | 2 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/sigs/function_signatures.hpp | 54 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/sigs/function_signatures_def.hpp | 55 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/vector_type.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast/void_type.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/ast_def.cpp | 6 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/compile_functions.hpp | 9 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/compiler.hpp | 4 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/function_signatures.h | 1509 ++--- StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator.hpp | 1 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/constants.hpp | 9 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/constrained_param_names_visgen.hpp | 25 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/dump_member_var_visgen.hpp | 57 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/expression_visgen.hpp | 122 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/fun_scalar_type.hpp | 2 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_array_builder_adds.hpp | 9 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_array_var_type.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_bare_type.hpp | 21 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_constrained_param_names_method.hpp | 15 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_constructor.hpp | 15 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_cpp.hpp | 4 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_eigen_index_expression.hpp | 5 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_expression.hpp | 39 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_fun_inst_templ_params.hpp | 2 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_function.hpp | 8 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_function_arguments.hpp | 3 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_function_body.hpp | 14 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_function_instantiation.hpp | 16 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_function_instantiation_body.hpp | 8 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_function_instantiation_name.hpp | 1 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_function_instantiations.hpp | 11 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_function_template_parameters.hpp | 2 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_functions.hpp | 5 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_indexed_expr.hpp | 8 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_initializer.hpp | 4 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_local_var_decls.hpp | 17 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_local_var_inits.hpp | 14 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_log_prob.hpp | 20 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_quoted_expression.hpp | 3 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_real_var_type.hpp | 12 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_register_mpi.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_standalone_functions.hpp | 14 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_statement.hpp | 16 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_statements.hpp | 17 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_unconstrained_param_names_method.hpp | 12 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_validate_context_size.hpp | 8 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_validate_positive.hpp | 5 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_var_resizing.hpp | 3 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/generate_write_array_method.hpp | 32 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/has_only_int_args.hpp | 2 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/idx_user_visgen.hpp | 16 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/idx_visgen.hpp | 15 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/init_local_var_visgen.hpp | 97 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/init_visgen.hpp | 20 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/is_numbered_statement_vis.hpp | 8 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/local_var_decl_visgen.hpp | 102 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/local_var_init_nan_visgen.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/printable_visgen.hpp | 5 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/set_param_ranges_visgen.hpp | 62 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/statement_visgen.hpp | 278 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/unconstrained_param_names_visgen.hpp | 23 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/validate_transformed_params_visgen.hpp | 4 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/validate_var_decl_visgen.hpp | 8 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/write_array_vars_visgen.hpp | 4 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/write_array_visgen.hpp | 8 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/generator/write_dims_visgen.hpp | 7 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/grammars/bare_type_grammar_def.hpp | 13 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/grammars/semantic_actions.hpp | 116 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/grammars/semantic_actions_def.cpp | 892 +-- StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/grammars/statement_grammar.hpp | 54 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/grammars/statement_grammar_def.hpp | 192 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/grammars/term_grammar.hpp | 5 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/grammars/term_grammar_def.hpp | 35 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/lang/rethrow_located.hpp | 3 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/mcmc/chains.hpp | 47 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/mcmc/hmc/xhmc/base_xhmc.hpp | 6 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/model/standalone_functions_header.hpp | 1 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/services/optimize/bfgs.hpp | 4 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/services/optimize/lbfgs.hpp | 4 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/services/optimize/newton.hpp | 4 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/services/sample/standalone_gqs.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/services/util/gq_writer.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/services/util/initialize.hpp | 399 - StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/services/util/mcmc_writer.hpp | 482 - StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/variational/advi.hpp | 4 StanHeaders-2.18.0/StanHeaders/inst/include/src/stan/version.hpp | 2 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/arr/fun/log_sum_exp.hpp | 35 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/arr/fun/sum.hpp | 44 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/arr/fun/to_fvar.hpp | 49 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/core/fvar.hpp | 555 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/core/operator_addition.hpp | 80 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/core/operator_division.hpp | 80 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/core/operator_equal.hpp | 86 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/core/operator_greater_than.hpp | 90 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/core/operator_greater_than_or_equal.hpp | 94 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/core/operator_less_than.hpp | 93 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/core/operator_less_than_or_equal.hpp | 90 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/core/operator_logical_and.hpp | 88 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/core/operator_logical_or.hpp | 88 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/core/operator_multiplication.hpp | 79 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/core/operator_not_equal.hpp | 88 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/core/operator_subtraction.hpp | 78 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/core/operator_unary_minus.hpp | 26 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/core/operator_unary_not.hpp | 30 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/core/operator_unary_plus.hpp | 32 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/core/std_numeric_limits.hpp | 172 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/Eigen_NumTraits.hpp | 111 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/columns_dot_product.hpp | 91 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/columns_dot_self.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/crossprod.hpp | 21 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/determinant.hpp | 50 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/divide.hpp | 104 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/dot_product.hpp | 299 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/dot_self.hpp | 17 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/inverse.hpp | 43 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/log_determinant.hpp | 18 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/log_softmax.hpp | 69 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/log_sum_exp.hpp | 41 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/mdivide_left.hpp | 163 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/mdivide_left_ldlt.hpp | 51 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/mdivide_left_tri_low.hpp | 195 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/mdivide_right.hpp | 166 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/mdivide_right_tri_low.hpp | 192 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/multiply.hpp | 233 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/multiply_lower_tri_self_transpose.hpp | 31 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/qr_Q.hpp | 35 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/qr_R.hpp | 39 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/quad_form_sym.hpp | 89 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/rows_dot_product.hpp | 85 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/rows_dot_self.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/softmax.hpp | 71 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/squared_distance.hpp | 300 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/sum.hpp | 46 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/tcrossprod.hpp | 21 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/to_fvar.hpp | 59 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/trace_gen_quad_form.hpp | 28 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/trace_quad_form.hpp | 59 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/typedefs.hpp | 41 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/fun/unit_vector_constrain.hpp | 77 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/functor/gradient.hpp | 90 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/functor/hessian.hpp | 117 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/functor/jacobian.hpp | 49 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/meta/operands_and_partials.hpp | 201 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/mat/vectorize/apply_scalar_unary.hpp | 58 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal.hpp | 1 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/Phi.hpp | 21 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/Phi_approx.hpp | 36 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/abs.hpp | 28 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/acos.hpp | 20 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/acosh.hpp | 17 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/asin.hpp | 18 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/asinh.hpp | 16 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/atan.hpp | 16 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/atan2.hpp | 44 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/atanh.hpp | 32 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/bessel_first_kind.hpp | 18 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/bessel_second_kind.hpp | 18 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/binary_log_loss.hpp | 23 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/binomial_coefficient_log.hpp | 117 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/cbrt.hpp | 29 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/ceil.hpp | 16 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/cos.hpp | 20 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/cosh.hpp | 20 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/digamma.hpp | 30 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/erf.hpp | 17 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/erfc.hpp | 17 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/exp.hpp | 16 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/exp2.hpp | 17 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/expm1.hpp | 16 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/fabs.hpp | 30 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/falling_factorial.hpp | 62 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/fdim.hpp | 103 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/floor.hpp | 16 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/fma.hpp | 239 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/fmax.hpp | 153 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/fmin.hpp | 106 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/fmod.hpp | 55 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/gamma_p.hpp | 146 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/gamma_q.hpp | 158 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/grad_inc_beta.hpp | 72 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/hypot.hpp | 120 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/inc_beta.hpp | 33 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/inv.hpp | 14 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/inv_Phi.hpp | 17 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/inv_cloglog.hpp | 16 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/inv_logit.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/inv_sqrt.hpp | 18 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/inv_square.hpp | 16 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/is_inf.hpp | 32 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/is_nan.hpp | 32 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/lbeta.hpp | 47 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/lgamma.hpp | 31 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/lmgamma.hpp | 25 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/log10.hpp | 26 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1m.hpp | 13 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1m_exp.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1m_inv_logit.hpp | 35 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1p.hpp | 14 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1p_exp.hpp | 18 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/log2.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_diff_exp.hpp | 52 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_falling_factorial.hpp | 53 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_inv_logit.hpp | 17 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_inv_logit_diff.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_mix.hpp | 425 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_rising_factorial.hpp | 37 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_sum_exp.hpp | 46 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/logit.hpp | 20 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/modified_bessel_first_kind.hpp | 18 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/modified_bessel_second_kind.hpp | 18 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/multiply_log.hpp | 44 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/owens_t.hpp | 114 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/pow.hpp | 86 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/primitive_value.hpp | 32 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/rising_factorial.hpp | 55 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/round.hpp | 39 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/sin.hpp | 19 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/sinh.hpp | 19 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/sqrt.hpp | 16 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/square.hpp | 15 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/tan.hpp | 18 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/tanh.hpp | 18 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/tgamma.hpp | 32 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/to_fvar.hpp | 26 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/trigamma.hpp | 30 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/trunc.hpp | 30 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/value_of.hpp | 26 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/fun/value_of_rec.hpp | 32 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/meta/ad_promotable.hpp | 18 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/meta/is_fvar.hpp | 10 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/meta/operands_and_partials.hpp | 171 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/fwd/scal/meta/partials_type.hpp | 10 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/gpu |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/memory/stack_alloc.hpp | 504 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/mix/mat/fun/typedefs.hpp | 35 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/mix/mat/functor/derivative.hpp | 46 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/mix/mat/functor/finite_diff_grad_hessian.hpp | 149 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/mix/mat/functor/grad_hessian.hpp | 127 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/mix/mat/functor/grad_tr_mat_times_hessian.hpp | 80 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/mix/mat/functor/gradient_dot_vector.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/mix/mat/functor/hessian.hpp | 125 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/mix/mat/functor/hessian_times_vector.hpp | 81 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/mix/mat/functor/partial_derivative.hpp | 55 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr.hpp | 9 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/err/check_matching_sizes.hpp | 57 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/err/check_nonzero_size.hpp | 57 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/err/check_opencl.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/err/check_ordered.hpp | 66 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/fun/array_builder.hpp | 84 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/fun/common_type.hpp | 30 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/fun/dot.hpp | 19 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/fun/dot_self.hpp | 18 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/fun/fill.hpp | 38 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/fun/inverse_softmax.hpp | 68 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/fun/log_sum_exp.hpp | 61 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/fun/promote_elements.hpp | 94 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/fun/promote_scalar.hpp | 64 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/fun/promote_scalar_type.hpp | 36 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/fun/rep_array.hpp | 54 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/fun/scaled_add.hpp | 17 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/fun/sort_asc.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/fun/sort_desc.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/fun/sub.hpp | 18 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/fun/sum.hpp | 38 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/fun/value_of.hpp | 70 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/fun/value_of_rec.hpp | 73 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/functor/coupled_ode_observer.hpp | 67 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/functor/coupled_ode_system.hpp | 268 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/functor/integrate_1d.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp | 236 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/functor/mpi_cluster.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/functor/mpi_cluster_inst.cpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/functor/mpi_command.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/functor/mpi_distributed_apply.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/meta/VectorBuilderHelper.hpp | 39 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/meta/contains_std_vector.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/meta/get.hpp | 11 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/meta/index_type.hpp | 32 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/meta/is_constant_struct.hpp | 11 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/meta/is_std_vector.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/meta/is_vector.hpp | 27 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/meta/length.hpp | 9 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/meta/scalar_type.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/arr/meta/value_type.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat.hpp | 54 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/err/check_cholesky_factor.hpp | 69 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/err/check_cholesky_factor_corr.hpp | 74 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/err/check_column_index.hpp | 72 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/err/check_corr_matrix.hpp | 107 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/err/check_cov_matrix.hpp | 57 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/err/check_ldlt_factor.hpp | 56 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/err/check_lower_triangular.hpp | 72 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/err/check_matching_dims.hpp | 110 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/err/check_multiplicable.hpp | 64 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/err/check_ordered.hpp | 74 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/err/check_pos_definite.hpp | 144 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/err/check_pos_semidefinite.hpp | 72 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/err/check_positive_ordered.hpp | 65 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/err/check_range.hpp | 155 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/err/check_row_index.hpp | 64 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/err/check_simplex.hpp | 104 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/err/check_spsd_matrix.hpp | 55 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/err/check_square.hpp | 50 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/err/check_std_vector_index.hpp | 60 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/err/check_symmetric.hpp | 104 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/err/check_unit_vector.hpp | 72 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/err/check_vector.hpp | 79 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/err/constraint_tolerance.hpp | 16 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/err/validate_non_negative_index.hpp | 29 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/LDLT_factor.hpp | 231 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/Phi.hpp | 51 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/Phi_approx.hpp | 70 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/accumulator.hpp | 208 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/acos.hpp | 53 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/acosh.hpp | 67 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/add.hpp | 136 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/add_diag.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/append_array.hpp | 121 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/append_col.hpp | 414 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/append_row.hpp | 398 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/asin.hpp | 53 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/asinh.hpp | 55 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/assign.hpp | 326 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/atan.hpp | 53 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/atanh.hpp | 67 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/autocorrelation.hpp | 289 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/autocovariance.hpp | 166 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/block.hpp | 47 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/cbrt.hpp | 53 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/ceil.hpp | 53 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/chol2inv.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/cholesky_corr_constrain.hpp | 137 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/cholesky_corr_free.hpp | 45 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/cholesky_decompose.hpp | 50 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/cholesky_factor_constrain.hpp | 145 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/cholesky_factor_free.hpp | 63 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/col.hpp | 44 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/cols.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/columns_dot_product.hpp | 46 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/columns_dot_self.hpp | 26 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/common_type.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/corr_matrix_constrain.hpp | 164 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/corr_matrix_free.hpp | 88 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/cos.hpp | 53 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/cosh.hpp | 53 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/cov_exp_quad.hpp | 303 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/cov_matrix_constrain.hpp | 156 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/cov_matrix_constrain_lkj.hpp | 149 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/cov_matrix_free.hpp | 95 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/cov_matrix_free_lkj.hpp | 93 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/crossprod.hpp | 25 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/csr_extract_u.hpp | 75 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/csr_extract_v.hpp | 79 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/csr_extract_w.hpp | 74 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/csr_matrix_times_vector.hpp | 198 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/csr_to_dense_matrix.hpp | 105 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/csr_u_to_z.hpp | 42 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/cumulative_sum.hpp | 96 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/determinant.hpp | 30 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/diag_matrix.hpp | 29 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/diag_post_multiply.hpp | 41 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/diag_pre_multiply.hpp | 39 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/diagonal.hpp | 29 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/digamma.hpp | 58 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/dims.hpp | 55 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/distance.hpp | 43 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/divide.hpp | 36 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/dot_product.hpp | 87 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/dot_self.hpp | 30 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/eigenvalues_sym.hpp | 44 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/eigenvectors_sym.hpp | 27 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/elt_divide.hpp | 127 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/elt_multiply.hpp | 52 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/erf.hpp | 57 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/erfc.hpp | 53 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/exp.hpp | 69 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/exp2.hpp | 67 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/expm1.hpp | 53 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/fabs.hpp | 57 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/factor_U.hpp | 77 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/factor_cov_matrix.hpp | 85 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/fill.hpp | 38 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/floor.hpp | 53 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/get_base1.hpp | 690 +- StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/get_base1_lhs.hpp | 692 +- StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/get_lp.hpp | 18 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/gp_dot_prod_cov.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/gp_periodic_cov.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/head.hpp | 121 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/initialize.hpp | 49 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/inv.hpp | 51 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/inv_Phi.hpp | 56 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/inv_cloglog.hpp | 52 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/inv_logit.hpp | 52 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/inv_sqrt.hpp | 52 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/inv_square.hpp | 52 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/inverse.hpp | 28 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/inverse_spd.hpp | 59 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/lgamma.hpp | 57 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/log.hpp | 67 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/log10.hpp | 53 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/log1m.hpp | 51 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/log1m_exp.hpp | 52 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/log1m_inv_logit.hpp | 70 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/log1p.hpp | 67 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/log1p_exp.hpp | 52 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/log2.hpp | 67 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/log_determinant.hpp | 30 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/log_determinant_ldlt.hpp | 17 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/log_determinant_spd.hpp | 44 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/log_inv_logit.hpp | 70 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/log_mix.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/log_softmax.hpp | 86 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/log_sum_exp.hpp | 65 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/logit.hpp | 67 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/make_nu.hpp | 62 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/matrix_exp.hpp | 84 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp | 61 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/matrix_exp_multiply.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/matrix_exp_pade.hpp | 56 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/max.hpp | 96 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_left.hpp | 50 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_left_ldlt.hpp | 39 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_left_spd.hpp | 56 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_left_tri.hpp | 88 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_left_tri_low.hpp | 79 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_right.hpp | 63 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_right_ldlt.hpp | 55 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_right_spd.hpp | 51 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_right_tri.hpp | 69 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/mdivide_right_tri_low.hpp | 45 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/mean.hpp | 66 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/min.hpp | 94 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/minus.hpp | 29 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/multiply.hpp | 138 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/multiply_lower_tri_self_transpose.hpp | 61 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/num_elements.hpp | 77 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/opencl_copy.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/ordered_constrain.hpp | 111 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/ordered_free.hpp | 65 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/positive_ordered_constrain.hpp | 108 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/positive_ordered_free.hpp | 67 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/prod.hpp | 60 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/promote_common.hpp | 39 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/promote_elements.hpp | 98 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/promote_scalar.hpp | 170 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/promote_scalar_type.hpp | 118 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/qr_Q.hpp | 44 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/qr_R.hpp | 50 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/qr_thin_Q.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/qr_thin_R.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/quad_form.hpp | 43 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/quad_form_diag.hpp | 50 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/quad_form_sym.hpp | 42 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/rank.hpp | 44 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/read_corr_L.hpp | 184 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/read_corr_matrix.hpp | 100 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/read_cov_L.hpp | 45 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/read_cov_matrix.hpp | 78 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/rep_matrix.hpp | 55 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/rep_row_vector.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/rep_vector.hpp | 23 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/resize.hpp | 76 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/round.hpp | 53 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/row.hpp | 46 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/rows.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/rows_dot_product.hpp | 44 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/rows_dot_self.hpp | 25 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/scale_matrix_exp_multiply.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/sd.hpp | 64 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/segment.hpp | 100 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/simplex_constrain.hpp | 147 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/simplex_free.hpp | 71 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/sin.hpp | 53 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/singular_values.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/sinh.hpp | 53 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/size.hpp | 28 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/softmax.hpp | 102 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/sort_asc.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/sort_desc.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/sort_indices.hpp | 126 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/sort_indices_asc.hpp | 30 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/sort_indices_desc.hpp | 30 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/sqrt.hpp | 53 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/square.hpp | 51 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/squared_distance.hpp | 92 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/stan_print.hpp | 103 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/sub_col.hpp | 45 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/sub_row.hpp | 45 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/subtract.hpp | 100 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/sum.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/tail.hpp | 119 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/tan.hpp | 53 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/tanh.hpp | 53 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/tcrossprod.hpp | 38 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/tgamma.hpp | 57 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/to_array_1d.hpp | 69 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/to_array_2d.hpp | 35 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/to_matrix.hpp | 404 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/to_row_vector.hpp | 54 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/to_vector.hpp | 58 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/trace.hpp | 39 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/trace_gen_inv_quad_form_ldlt.hpp | 51 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/trace_gen_quad_form.hpp | 37 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/trace_inv_quad_form_ldlt.hpp | 38 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/trace_quad_form.hpp | 29 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/transpose.hpp | 16 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/trigamma.hpp | 70 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/trunc.hpp | 69 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/typedefs.hpp | 49 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/unit_vector_constrain.hpp | 87 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/unit_vector_free.hpp | 37 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/value_of.hpp | 78 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/value_of_rec.hpp | 78 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/variance.hpp | 93 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/welford_covar_estimator.hpp | 75 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/fun/welford_var_estimator.hpp | 75 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/functor/finite_diff_gradient.hpp | 139 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/functor/finite_diff_hessian.hpp | 185 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/functor/map_rect.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/functor/map_rect_combine.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/functor/map_rect_mpi.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/functor/map_rect_reduce.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/functor/mpi_parallel_call.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/meta/append_return_type.hpp | 131 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/meta/broadcast_array.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/meta/get.hpp | 11 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/meta/index_type.hpp | 30 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/meta/is_constant_struct.hpp | 19 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/meta/is_vector.hpp | 37 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/meta/is_vector_like.hpp | 35 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/meta/length.hpp | 9 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/meta/length_mvt.hpp | 18 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/meta/operands_and_partials.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/meta/scalar_type.hpp | 50 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/meta/seq_view.hpp | 316 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/meta/value_type.hpp | 30 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/meta/vector_seq_view.hpp | 230 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/bernoulli_logit_glm_lpmf.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_log.hpp | 82 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_logit_log.hpp | 89 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_logit_lpmf.hpp | 129 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_logit_rng.hpp | 63 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_lpmf.hpp | 147 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_rng.hpp | 52 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/dirichlet_log.hpp | 76 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/dirichlet_lpmf.hpp | 168 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/dirichlet_rng.hpp | 115 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/gaussian_dlm_obs_log.hpp | 299 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/gaussian_dlm_obs_lpdf.hpp | 654 +- StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/inv_wishart_log.hpp | 86 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/inv_wishart_lpdf.hpp | 196 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/inv_wishart_rng.hpp | 38 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_cholesky_log.hpp | 48 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_cholesky_lpdf.hpp | 98 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_cholesky_rng.hpp | 37 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_log.hpp | 44 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_lpdf.hpp | 141 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_rng.hpp | 46 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_cov_log.hpp | 109 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_cov_lpdf.hpp | 200 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/matrix_normal_prec_log.hpp | 100 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/matrix_normal_prec_lpdf.hpp | 170 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_gp_cholesky_log.hpp | 93 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_gp_cholesky_lpdf.hpp | 162 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_gp_log.hpp | 86 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_gp_lpdf.hpp | 159 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_cholesky_log.hpp | 72 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_cholesky_lpdf.hpp | 255 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_cholesky_rng.hpp | 104 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_log.hpp | 44 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_lpdf.hpp | 191 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_prec_log.hpp | 42 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_prec_lpdf.hpp | 191 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_rng.hpp | 115 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_student_t_log.hpp | 58 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_student_t_lpdf.hpp | 241 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_student_t_rng.hpp | 119 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/multinomial_log.hpp | 43 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/multinomial_lpmf.hpp | 82 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/multinomial_rng.hpp | 43 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/neg_binomial_2_log_glm_lpmf.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/normal_id_glm_lpdf.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_logistic_log.hpp | 92 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_logistic_lpmf.hpp | 278 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_logistic_rng.hpp | 50 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_probit_log.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_probit_lpmf.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_probit_rng.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/poisson_log_glm_lpmf.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/wishart_log.hpp | 105 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/wishart_lpdf.hpp | 179 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/prob/wishart_rng.hpp | 42 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/mat/vectorize/apply_scalar_unary.hpp | 285 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal.hpp | 9 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/err/check_2F1_converges.hpp | 124 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/err/check_3F2_converges.hpp | 156 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/err/check_bounded.hpp | 155 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/err/check_consistent_size.hpp | 72 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/err/check_consistent_sizes.hpp | 261 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/err/check_finite.hpp | 87 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/err/check_greater.hpp | 128 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/err/check_greater_or_equal.hpp | 130 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/err/check_less.hpp | 127 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/err/check_less_or_equal.hpp | 128 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/err/check_nonnegative.hpp | 93 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/err/check_not_nan.hpp | 89 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/err/check_positive.hpp | 95 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/err/check_positive_finite.hpp | 49 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/err/check_positive_size.hpp | 49 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/err/check_size_match.hpp | 130 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/err/domain_error.hpp | 101 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/err/domain_error_vec.hpp | 126 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/err/invalid_argument.hpp | 116 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/err/invalid_argument_vec.hpp | 128 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/err/out_of_range.hpp | 69 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/err/system_error.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/F32.hpp | 148 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/Phi.hpp | 62 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/Phi_approx.hpp | 54 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/abs.hpp | 28 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/acosh.hpp | 52 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/as_bool.hpp | 30 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/asinh.hpp | 52 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/atanh.hpp | 56 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/bessel_first_kind.hpp | 71 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/bessel_second_kind.hpp | 73 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/binary_log_loss.hpp | 48 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/binomial_coefficient_log.hpp | 137 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/boost_policy.hpp | 29 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/cbrt.hpp | 52 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/choose.hpp | 62 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/common_type.hpp | 44 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/constants.hpp | 309 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/corr_constrain.hpp | 80 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/corr_free.hpp | 49 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/digamma.hpp | 84 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/distance.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/divide.hpp | 40 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/erf.hpp | 54 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/erfc.hpp | 54 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/exp.hpp | 24 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/exp2.hpp | 54 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/expm1.hpp | 44 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/falling_factorial.hpp | 119 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/fdim.hpp | 46 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/fill.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/fma.hpp | 42 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/fmax.hpp | 40 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/fmin.hpp | 40 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/gamma_p.hpp | 100 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/gamma_q.hpp | 97 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_2F1.hpp | 160 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_F32.hpp | 216 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_inc_beta.hpp | 43 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_reg_inc_beta.hpp | 68 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_reg_inc_gamma.hpp | 182 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_reg_lower_inc_gamma.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/hypot.hpp | 42 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/ibeta.hpp | 46 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/identity_constrain.hpp | 70 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/identity_free.hpp | 36 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/if_else.hpp | 44 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/inc_beta.hpp | 16 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/inc_beta_dda.hpp | 156 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/inc_beta_ddb.hpp | 144 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/inc_beta_ddz.hpp | 58 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/int_step.hpp | 50 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/inv.hpp | 10 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_Phi.hpp | 133 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_cloglog.hpp | 90 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_logit.hpp | 92 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_sqrt.hpp | 14 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_square.hpp | 10 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/is_inf.hpp | 27 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/is_integer.hpp | 28 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/is_nan.hpp | 26 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/is_nonpositive_integer.hpp | 28 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/is_uninitialized.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/lb_constrain.hpp | 110 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/lb_free.hpp | 54 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/lbeta.hpp | 112 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/ldexp.hpp | 30 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/lgamma.hpp | 82 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/lmgamma.hpp | 112 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/log.hpp | 24 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/log1m.hpp | 76 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/log1m_exp.hpp | 90 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/log1m_inv_logit.hpp | 88 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/log1p.hpp | 64 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/log1p_exp.hpp | 82 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/log2.hpp | 70 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/log_diff_exp.hpp | 90 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/log_falling_factorial.hpp | 105 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/log_inv_logit.hpp | 82 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/log_inv_logit_diff.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/log_mix.hpp | 87 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/log_modified_bessel_first_kind.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/log_rising_factorial.hpp | 100 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/log_sum_exp.hpp | 92 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_and.hpp | 57 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_eq.hpp | 35 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_gt.hpp | 35 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_gte.hpp | 35 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_lt.hpp | 36 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_lte.hpp | 35 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_negation.hpp | 30 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_neq.hpp | 35 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/logical_or.hpp | 55 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/logit.hpp | 92 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/lub_constrain.hpp | 250 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/lub_free.hpp | 90 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/modified_bessel_first_kind.hpp | 69 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/modified_bessel_second_kind.hpp | 77 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/modulus.hpp | 16 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/multiply_log.hpp | 102 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/owens_t.hpp | 107 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/positive_constrain.hpp | 82 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/positive_free.hpp | 51 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/primitive_value.hpp | 78 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/prob_constrain.hpp | 94 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/prob_free.hpp | 48 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/promote_elements.hpp | 80 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/promote_scalar.hpp | 117 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/promote_scalar_type.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/rising_factorial.hpp | 118 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/round.hpp | 48 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/sign.hpp | 15 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/size_zero.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/square.hpp | 36 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/squared_distance.hpp | 37 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/step.hpp | 54 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/tgamma.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/trigamma.hpp | 233 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/trunc.hpp | 48 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/ub_constrain.hpp | 127 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/ub_free.hpp | 68 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/value_of.hpp | 74 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/fun/value_of_rec.hpp | 74 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/StdVectorBuilder.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/VectorBuilder.hpp | 74 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/VectorBuilderHelper.hpp | 93 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/ad_promotable.hpp | 251 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/broadcast_array.hpp | 45 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/child_type.hpp | 64 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/contains_fvar.hpp | 39 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/contains_nonconstant_struct.hpp | 26 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/contains_vector.hpp | 26 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/error_index.hpp | 14 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/get.hpp | 11 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/include_summand.hpp | 92 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/index_type.hpp | 51 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/is_constant.hpp | 41 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/is_constant_struct.hpp | 18 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/is_fvar.hpp | 11 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/is_std_vector.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/is_var.hpp | 11 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/is_var_or_arithmetic.hpp | 42 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/is_vector.hpp | 17 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/is_vector_like.hpp | 95 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/length.hpp | 9 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/length_mvt.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/likely.hpp | 8 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/max_size.hpp | 70 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/max_size_mvt.hpp | 45 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/operands_and_partials.hpp | 215 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/partials_return_type.hpp | 31 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/partials_type.hpp | 10 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/return_type.hpp | 36 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/scalar_seq_view.hpp | 88 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/scalar_type.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/scalar_type_pre.hpp | 58 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/size_of.hpp | 35 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/meta/value_type.hpp | 51 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_ccdf_log.hpp | 20 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_cdf.hpp | 128 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_cdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_lccdf.hpp | 120 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_lcdf.hpp | 120 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_log.hpp | 41 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_logit_log.hpp | 40 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_logit_lpmf.hpp | 157 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_logit_rng.hpp | 47 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_lpmf.hpp | 189 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_rng.hpp | 81 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_ccdf_log.hpp | 24 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_cdf.hpp | 253 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_cdf_log.hpp | 24 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_lccdf.hpp | 234 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_lcdf.hpp | 233 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_log.hpp | 50 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_lpmf.hpp | 293 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_rng.hpp | 81 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_ccdf_log.hpp | 23 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_cdf.hpp | 239 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_cdf_log.hpp | 23 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_lccdf.hpp | 217 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_lcdf.hpp | 220 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_log.hpp | 76 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_lpdf.hpp | 318 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_rng.hpp | 134 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_ccdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_cdf.hpp | 163 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_cdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_lccdf.hpp | 157 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_lcdf.hpp | 157 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_log.hpp | 49 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_logit_log.hpp | 49 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_logit_lpmf.hpp | 193 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_lpmf.hpp | 187 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_rng.hpp | 100 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_ccdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_cdf.hpp | 192 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_cdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_lccdf.hpp | 143 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_lcdf.hpp | 144 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_log.hpp | 72 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_lpdf.hpp | 205 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_rng.hpp | 88 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_ccdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_cdf.hpp | 197 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_cdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_lccdf.hpp | 181 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_lcdf.hpp | 181 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_log.hpp | 76 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_lpdf.hpp | 219 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_rng.hpp | 81 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_ccdf_log.hpp | 23 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_cdf.hpp | 167 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_cdf_log.hpp | 21 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_lccdf.hpp | 157 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_lcdf.hpp | 153 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_log.hpp | 41 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_lpdf.hpp | 202 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_rng.hpp | 97 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_ccdf_log.hpp | 27 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_cdf.hpp | 217 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_cdf_log.hpp | 27 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_lccdf.hpp | 194 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_lcdf.hpp | 201 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_log.hpp | 51 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_lpdf.hpp | 197 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_rng.hpp | 74 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_ccdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_cdf.hpp | 118 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_cdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_lccdf.hpp | 76 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_lcdf.hpp | 85 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_log.hpp | 89 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_lpdf.hpp | 163 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_rng.hpp | 62 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_ccdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_cdf.hpp | 118 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_cdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_lccdf.hpp | 100 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_lcdf.hpp | 90 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_log.hpp | 40 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_lpdf.hpp | 203 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_rng.hpp | 80 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_ccdf_log.hpp | 23 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_cdf.hpp | 224 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_cdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_lccdf.hpp | 175 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_lcdf.hpp | 172 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_log.hpp | 84 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_lpdf.hpp | 247 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_rng.hpp | 91 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_ccdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_cdf.hpp | 156 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_cdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_lccdf.hpp | 136 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_lcdf.hpp | 127 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_log.hpp | 39 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_lpdf.hpp | 182 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_rng.hpp | 83 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/hypergeometric_log.hpp | 48 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/hypergeometric_lpmf.hpp | 108 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/hypergeometric_rng.hpp | 57 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_ccdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_cdf.hpp | 205 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_cdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_lccdf.hpp | 190 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_lcdf.hpp | 189 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_log.hpp | 78 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_lpdf.hpp | 208 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_rng.hpp | 77 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_ccdf_log.hpp | 23 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_cdf.hpp | 236 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_cdf_log.hpp | 23 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_lccdf.hpp | 183 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_lcdf.hpp | 180 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_log.hpp | 70 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_lpdf.hpp | 242 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_rng.hpp | 81 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_ccdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_cdf.hpp | 163 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_cdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_lccdf.hpp | 135 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_lcdf.hpp | 136 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_log.hpp | 40 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_lpdf.hpp | 205 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_rng.hpp | 72 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_ccdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_cdf.hpp | 146 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_cdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_lccdf.hpp | 122 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_lcdf.hpp | 122 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_log.hpp | 40 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_lpdf.hpp | 229 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_rng.hpp | 78 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_ccdf_log.hpp | 24 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_cdf.hpp | 193 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_cdf_log.hpp | 25 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_lccdf.hpp | 64 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_lcdf.hpp | 82 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_log.hpp | 47 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_log_log.hpp | 49 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_log_lpmf.hpp | 192 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_log_rng.hpp | 129 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_lpmf.hpp | 196 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_rng.hpp | 128 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_ccdf_log.hpp | 24 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_cdf.hpp | 185 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_cdf_log.hpp | 24 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_lccdf.hpp | 186 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_lcdf.hpp | 185 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_log.hpp | 47 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_lpmf.hpp | 257 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_rng.hpp | 117 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_ccdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_cdf.hpp | 185 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_cdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_lccdf.hpp | 140 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_lcdf.hpp | 138 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_log.hpp | 76 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_lpdf.hpp | 197 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_rng.hpp | 78 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_sufficient_log.hpp | 57 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_sufficient_lpdf.hpp | 278 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_ccdf_log.hpp | 23 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_cdf.hpp | 162 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_cdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_lccdf.hpp | 127 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_lcdf.hpp | 134 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_log.hpp | 40 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_lpdf.hpp | 192 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_rng.hpp | 78 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_ccdf_log.hpp | 26 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_cdf.hpp | 202 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_cdf_log.hpp | 25 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_lccdf.hpp | 171 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_lcdf.hpp | 171 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_log.hpp | 49 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_lpdf.hpp | 220 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_rng.hpp | 80 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_ccdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_cdf.hpp | 120 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_cdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_lccdf.hpp | 107 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_lcdf.hpp | 108 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_log.hpp | 40 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_log_log.hpp | 41 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_log_lpmf.hpp | 139 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_log_rng.hpp | 72 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_lpmf.hpp | 118 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_rng.hpp | 69 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_ccdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_cdf.hpp | 122 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_cdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_lccdf.hpp | 99 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_lcdf.hpp | 108 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_log.hpp | 40 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_lpdf.hpp | 139 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_rng.hpp | 65 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_ccdf_log.hpp | 23 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_cdf.hpp | 238 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_cdf_log.hpp | 23 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_lccdf.hpp | 186 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_lcdf.hpp | 185 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_log.hpp | 79 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_lpdf.hpp | 270 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_rng.hpp | 84 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_ccdf_log.hpp | 24 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_cdf.hpp | 183 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_cdf_log.hpp | 24 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_lccdf.hpp | 152 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_lcdf.hpp | 152 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_log.hpp | 47 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_lpdf.hpp | 211 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_rng.hpp | 86 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/std_normal_log.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/std_normal_lpdf.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_ccdf_log.hpp | 23 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_cdf.hpp | 311 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_cdf_log.hpp | 23 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_lccdf.hpp | 294 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_lcdf.hpp | 294 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_log.hpp | 95 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_lpdf.hpp | 358 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_rng.hpp | 89 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_ccdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_cdf.hpp | 133 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_cdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_lccdf.hpp | 116 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_lcdf.hpp | 116 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_log.hpp | 82 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_lpdf.hpp | 189 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_rng.hpp | 67 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/von_mises_log.hpp | 39 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/von_mises_lpdf.hpp | 185 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/von_mises_rng.hpp | 137 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_ccdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_cdf.hpp | 151 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_cdf_log.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_lccdf.hpp | 118 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_lcdf.hpp | 127 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_log.hpp | 40 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_lpdf.hpp | 238 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_rng.hpp | 91 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/wiener_log.hpp | 86 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/prim/scal/prob/wiener_lpdf.hpp | 304 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/arr.hpp | 2 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/arr/fun/log_sum_exp.hpp | 69 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/arr/fun/sum.hpp | 97 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/arr/fun/to_var.hpp | 56 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/arr/functor/coupled_ode_system.hpp | 1131 +-- StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/arr/functor/integrate_1d.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/autodiffstackstorage.hpp | 123 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/chainable_alloc.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/chainablestack.hpp | 12 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/ddv_vari.hpp | 29 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/dv_vari.hpp | 25 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/dvd_vari.hpp | 29 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/dvv_vari.hpp | 29 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/empty_nested.hpp | 18 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/gevv_vvv_vari.hpp | 89 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/grad.hpp | 68 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/matrix_vari.hpp | 42 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/nested_size.hpp | 14 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/operator_addition.hpp | 207 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/operator_divide_equal.hpp | 26 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/operator_division.hpp | 221 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/operator_equal.hpp | 88 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/operator_greater_than.hpp | 82 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/operator_greater_than_or_equal.hpp | 92 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/operator_less_than.hpp | 80 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/operator_less_than_or_equal.hpp | 90 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/operator_logical_and.hpp | 80 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/operator_logical_or.hpp | 80 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/operator_minus_equal.hpp | 26 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/operator_multiplication.hpp | 205 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/operator_multiply_equal.hpp | 26 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/operator_not_equal.hpp | 90 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/operator_plus_equal.hpp | 26 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/operator_subtraction.hpp | 228 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/operator_unary_decrement.hpp | 98 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/operator_unary_increment.hpp | 90 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/operator_unary_negative.hpp | 82 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/operator_unary_not.hpp | 25 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/operator_unary_plus.hpp | 78 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/precomp_v_vari.hpp | 29 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/precomp_vv_vari.hpp | 36 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/precomp_vvv_vari.hpp | 42 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/precomputed_gradients.hpp | 168 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/print_stack.hpp | 45 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/recover_memory.hpp | 41 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/recover_memory_nested.hpp | 69 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/set_zero_all_adjoints.hpp | 24 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/set_zero_all_adjoints_nested.hpp | 44 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/start_nested.hpp | 32 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/std_isinf.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/std_isnan.hpp | 24 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/std_numeric_limits.hpp | 116 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/stored_gradient_vari.hpp | 87 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/v_vari.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/var.hpp | 855 +- StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/vari.hpp | 276 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/vd_vari.hpp | 25 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/vdd_vari.hpp | 29 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/vdv_vari.hpp | 29 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/vector_vari.hpp | 39 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/vv_vari.hpp | 25 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/vvd_vari.hpp | 29 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/core/vvv_vari.hpp | 29 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat.hpp | 6 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp | 661 +- StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/LDLT_alloc.hpp | 92 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/LDLT_factor.hpp | 254 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/cholesky_decompose.hpp | 501 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/columns_dot_product.hpp | 33 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/columns_dot_self.hpp | 32 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/cov_exp_quad.hpp | 512 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/crossprod.hpp | 25 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/determinant.hpp | 108 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/divide.hpp | 30 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/dot_product.hpp | 453 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/dot_self.hpp | 139 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/grad.hpp | 47 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/initialize_variable.hpp | 59 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/log_determinant.hpp | 49 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/log_determinant_ldlt.hpp | 79 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/log_determinant_spd.hpp | 94 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/log_softmax.hpp | 189 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/log_sum_exp.hpp | 83 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/matrix_exp_multiply.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/mdivide_left.hpp | 644 +- StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/mdivide_left_ldlt.hpp | 588 -- StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/mdivide_left_spd.hpp | 592 -- StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/mdivide_left_tri.hpp | 719 +- StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/multiply.hpp | 1213 ++-- StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/multiply_lower_tri_self_transpose.hpp | 73 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/quad_form.hpp | 240 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/quad_form_sym.hpp | 70 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/rows_dot_product.hpp | 33 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/scale_matrix_exp_multiply.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/sd.hpp | 142 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/softmax.hpp | 151 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/squared_distance.hpp | 224 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/stan_print.hpp | 10 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/sum.hpp | 88 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/tcrossprod.hpp | 77 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/to_var.hpp | 160 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/trace_gen_inv_quad_form_ldlt.hpp | 53 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/trace_gen_quad_form.hpp | 213 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/trace_inv_quad_form_ldlt.hpp | 321 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/trace_quad_form.hpp | 163 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/typedefs.hpp | 52 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/unit_vector_constrain.hpp | 183 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/fun/variance.hpp | 121 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/functor/algebra_solver.hpp | 507 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/functor/algebra_system.hpp | 290 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/functor/cvodes_integrator.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/functor/cvodes_ode_data.hpp | 375 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/functor/cvodes_utils.hpp | 91 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/functor/gradient.hpp | 105 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/functor/integrate_ode_adams.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/functor/integrate_ode_bdf.hpp | 222 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/functor/jacobian.hpp | 62 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/functor/map_rect_reduce.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/meta/operands_and_partials.hpp | 254 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/mat/vectorize/apply_scalar_unary.hpp | 52 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal.hpp | 1 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/Phi.hpp | 119 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/Phi_approx.hpp | 94 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/abs.hpp | 60 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/acos.hpp | 104 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/acosh.hpp | 110 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/as_bool.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/asin.hpp | 104 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/asinh.hpp | 100 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/atan.hpp | 92 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/atan2.hpp | 222 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/atanh.hpp | 110 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/bessel_first_kind.hpp | 39 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/bessel_second_kind.hpp | 39 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/binary_log_loss.hpp | 124 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/boost_fpclassify.hpp | 38 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/boost_isfinite.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/boost_isinf.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/boost_isnan.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/boost_isnormal.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/calculate_chain.hpp | 12 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/cbrt.hpp | 83 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/ceil.hpp | 98 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/cos.hpp | 80 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/cosh.hpp | 80 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/digamma.hpp | 28 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/erf.hpp | 103 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/erfc.hpp | 104 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/exp.hpp | 70 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/exp2.hpp | 78 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/expm1.hpp | 80 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/fabs.hpp | 102 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/falling_factorial.hpp | 77 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/fdim.hpp | 238 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/floor.hpp | 98 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/fma.hpp | 423 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/fmax.hpp | 228 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/fmin.hpp | 219 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/fmod.hpp | 245 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/gamma_p.hpp | 206 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/gamma_q.hpp | 106 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/grad_inc_beta.hpp | 58 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/hypot.hpp | 199 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/ibeta.hpp | 421 - StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/if_else.hpp | 88 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/inc_beta.hpp | 61 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/inv.hpp | 64 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/inv_Phi.hpp | 55 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/inv_cloglog.hpp | 61 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/inv_logit.hpp | 53 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/inv_sqrt.hpp | 66 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/inv_square.hpp | 66 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/is_inf.hpp | 28 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/is_nan.hpp | 28 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/is_uninitialized.hpp | 34 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/lgamma.hpp | 50 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/lmgamma.hpp | 39 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/log.hpp | 82 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/log10.hpp | 88 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/log1m.hpp | 48 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/log1m_exp.hpp | 49 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/log1m_inv_logit.hpp | 28 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/log1p.hpp | 48 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/log1p_exp.hpp | 37 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/log2.hpp | 86 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/log_diff_exp.hpp | 123 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/log_falling_factorial.hpp | 119 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/log_inv_logit.hpp | 28 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/log_inv_logit_diff.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/log_mix.hpp | 235 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/log_rising_factorial.hpp | 92 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/log_sum_exp.hpp | 103 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/logit.hpp | 27 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/modified_bessel_first_kind.hpp | 41 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/modified_bessel_second_kind.hpp | 41 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/multiply_log.hpp | 183 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/owens_t.hpp | 165 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/pow.hpp | 264 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/primitive_value.hpp | 24 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/rising_factorial.hpp | 73 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/round.hpp | 90 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/sin.hpp | 80 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/sinh.hpp | 80 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/sqrt.hpp | 82 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/square.hpp | 76 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/squared_distance.hpp | 99 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/step.hpp | 44 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/tan.hpp | 80 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/tanh.hpp | 84 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/tgamma.hpp | 104 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/to_var.hpp | 46 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/trigamma.hpp | 26 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/trunc.hpp | 90 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/value_of.hpp | 36 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/fun/value_of_rec.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/meta/ad_promotable.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/meta/is_var.hpp | 11 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/meta/operands_and_partials.hpp | 205 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/rev/scal/meta/partials_type.hpp | 11 StanHeaders-2.18.0/StanHeaders/inst/include/stan/math/version.hpp | 22 StanHeaders-2.18.0/StanHeaders/inst/include/stan_sundials_printf_override.hpp |only StanHeaders-2.18.0/StanHeaders/inst/include/sundials/sundials_band.h | 32 StanHeaders-2.18.0/StanHeaders/inst/include/sundials/sundials_config.h | 8 StanHeaders-2.18.0/StanHeaders/inst/include/sundials/sundials_config.in | 27 StanHeaders-2.18.0/StanHeaders/inst/include/sundials/sundials_dense.h | 30 StanHeaders-2.18.0/StanHeaders/inst/include/sundials/sundials_direct.h | 53 StanHeaders-2.18.0/StanHeaders/inst/include/sundials/sundials_fconfig.in |only StanHeaders-2.18.0/StanHeaders/inst/include/sundials/sundials_fnvector.h | 4 StanHeaders-2.18.0/StanHeaders/inst/include/sundials/sundials_iterative.h | 30 StanHeaders-2.18.0/StanHeaders/inst/include/sundials/sundials_klu_impl.h | 4 StanHeaders-2.18.0/StanHeaders/inst/include/sundials/sundials_lapack.h | 82 StanHeaders-2.18.0/StanHeaders/inst/include/sundials/sundials_linearsolver.h |only StanHeaders-2.18.0/StanHeaders/inst/include/sundials/sundials_math.h | 4 StanHeaders-2.18.0/StanHeaders/inst/include/sundials/sundials_matrix.h |only StanHeaders-2.18.0/StanHeaders/inst/include/sundials/sundials_mpi_types.h |only StanHeaders-2.18.0/StanHeaders/inst/include/sundials/sundials_nvector.h | 20 StanHeaders-2.18.0/StanHeaders/inst/include/sundials/sundials_sparse.h | 4 StanHeaders-2.18.0/StanHeaders/inst/include/sundials/sundials_spbcgs.h | 4 StanHeaders-2.18.0/StanHeaders/inst/include/sundials/sundials_spgmr.h | 4 StanHeaders-2.18.0/StanHeaders/inst/include/sundials/sundials_sptfqmr.h | 4 StanHeaders-2.18.0/StanHeaders/inst/include/sundials/sundials_superlumt_impl.h | 4 StanHeaders-2.18.0/StanHeaders/inst/include/sundials/sundials_types.h | 95 StanHeaders-2.18.0/StanHeaders/inst/include/sundials/sundials_version.h |only StanHeaders-2.18.0/StanHeaders/inst/include/sunlinsol |only StanHeaders-2.18.0/StanHeaders/inst/include/sunmatrix |only StanHeaders-2.18.0/StanHeaders/src/Makevars | 19 StanHeaders-2.18.0/StanHeaders/src/Makevars.win | 20 StanHeaders-2.18.0/StanHeaders/src/cvodes/CMakeLists.txt |only StanHeaders-2.18.0/StanHeaders/src/cvodes/LICENSE | 17 StanHeaders-2.18.0/StanHeaders/src/cvodes/README |only StanHeaders-2.18.0/StanHeaders/src/cvodes/cvodea.c |only StanHeaders-2.18.0/StanHeaders/src/cvodes/cvodea_io.c |only StanHeaders-2.18.0/StanHeaders/src/cvodes/cvodes.c |only StanHeaders-2.18.0/StanHeaders/src/cvodes/cvodes_bandpre.c |only StanHeaders-2.18.0/StanHeaders/src/cvodes/cvodes_bandpre_impl.h |only StanHeaders-2.18.0/StanHeaders/src/cvodes/cvodes_bbdpre.c |only StanHeaders-2.18.0/StanHeaders/src/cvodes/cvodes_bbdpre_impl.h |only StanHeaders-2.18.0/StanHeaders/src/cvodes/cvodes_diag.c |only StanHeaders-2.18.0/StanHeaders/src/cvodes/cvodes_diag_impl.h |only StanHeaders-2.18.0/StanHeaders/src/cvodes/cvodes_direct.c |only StanHeaders-2.18.0/StanHeaders/src/cvodes/cvodes_direct_impl.h |only StanHeaders-2.18.0/StanHeaders/src/cvodes/cvodes_impl.h |only StanHeaders-2.18.0/StanHeaders/src/cvodes/cvodes_io.c |only StanHeaders-2.18.0/StanHeaders/src/cvodes/cvodes_spils.c |only StanHeaders-2.18.0/StanHeaders/src/cvodes/cvodes_spils_impl.h |only StanHeaders-2.18.0/StanHeaders/src/idas |only StanHeaders-2.18.0/StanHeaders/src/init.c | 2 StanHeaders-2.18.0/StanHeaders/src/nvec_cuda |only StanHeaders-2.18.0/StanHeaders/src/nvec_openmp |only StanHeaders-2.18.0/StanHeaders/src/nvec_par |only StanHeaders-2.18.0/StanHeaders/src/nvec_parhyp |only StanHeaders-2.18.0/StanHeaders/src/nvec_petsc |only StanHeaders-2.18.0/StanHeaders/src/nvec_pthreads |only StanHeaders-2.18.0/StanHeaders/src/nvec_raja |only StanHeaders-2.18.0/StanHeaders/src/nvec_ser |only StanHeaders-2.18.0/StanHeaders/src/sundials |only StanHeaders-2.18.0/StanHeaders/src/sunlinsol_band |only StanHeaders-2.18.0/StanHeaders/src/sunlinsol_dense |only StanHeaders-2.18.0/StanHeaders/src/sunlinsol_klu |only StanHeaders-2.18.0/StanHeaders/src/sunlinsol_lapackband |only StanHeaders-2.18.0/StanHeaders/src/sunlinsol_lapackdense |only StanHeaders-2.18.0/StanHeaders/src/sunlinsol_pcg |only StanHeaders-2.18.0/StanHeaders/src/sunlinsol_spbcgs |only StanHeaders-2.18.0/StanHeaders/src/sunlinsol_spfgmr |only StanHeaders-2.18.0/StanHeaders/src/sunlinsol_spgmr |only StanHeaders-2.18.0/StanHeaders/src/sunlinsol_sptfqmr |only StanHeaders-2.18.0/StanHeaders/src/sunlinsol_superlumt |only StanHeaders-2.18.0/StanHeaders/src/sunmat_band |only StanHeaders-2.18.0/StanHeaders/src/sunmat_dense |only StanHeaders-2.18.0/StanHeaders/src/sunmat_sparse |only StanHeaders-2.18.0/StanHeaders/vignettes |only 1422 files changed, 57655 insertions(+), 58913 deletions(-)
Title: Statistical Significance of the Sharpe Ratio
Description: A collection of tools for analyzing significance of assets,
funds, and trading strategies, based on the Sharpe ratio and overfit
of the same. Provides density, distribution, quantile and random generation
of the Sharpe ratio distribution based on normal returns, as well
as the optimal Sharpe ratio over multiple assets. Computes confidence intervals
on the Sharpe and provides a test of equality of Sharpe ratios based on
the Delta method.
Author: Steven E. Pav [aut, cre] (<https://orcid.org/0000-0002-4197-6195>)
Maintainer: Steven E. Pav <shabbychef@gmail.com>
Diff between SharpeR versions 1.1.0 dated 2016-03-14 and 1.2.0 dated 2018-10-07
ChangeLog |only DESCRIPTION | 31 ++- MD5 | 118 +++++++------- NAMESPACE | 4 R/SharpeR.r | 14 + R/distributions.r | 15 - R/estimation.r | 164 +++++++++++++------- R/sr.r | 185 ++++++++++------------ R/sr_bias.r |only R/tests.r | 117 ++++++++++---- R/utils.r | 21 +- README.md | 108 +++++-------- build/vignette.rds |binary inst/doc/AsymptoticMarkowitz.R |only inst/doc/AsymptoticMarkowitz.Rnw |only inst/doc/AsymptoticMarkowitz.pdf |only inst/doc/SharpeR.Rnw | 1 inst/doc/SharpeR.pdf |binary inst/doc/SharpeRatio.Rnw | 11 - inst/doc/SharpeRatio.pdf |binary man/NEWS.Rd | 14 + man/SharpeR.Rd | 12 - man/as.del_sropt.Rd | 13 - man/as.sr.Rd | 38 ++-- man/as.sropt.Rd | 13 - man/confint.Rd | 32 ++- man/del_sropt.Rd | 9 - man/dsr.Rd | 9 - man/dsropt.Rd | 7 man/inference.Rd | 11 - man/is.del_sropt.Rd | 7 man/is.sr.Rd | 9 - man/is.sropt.Rd | 7 man/ism_vcov.Rd | 7 man/pco_sropt.Rd | 7 man/plambdap.Rd | 12 - man/power.sr_test.Rd | 9 - man/power.sropt_test.Rd | 7 man/predint.Rd | 9 - man/print.Rd | 11 - man/reannualize.Rd | 9 - man/se.Rd | 39 ++-- man/sm_vcov.Rd | 7 man/sr.Rd | 19 +- man/sr_bias.Rd |only man/sr_equality_test.Rd | 9 - man/sr_test.Rd | 32 +++ man/sr_unpaired_test.Rd | 21 +- man/sr_variance.Rd |only man/sr_vcov.Rd | 9 - man/sric.Rd | 7 man/sropt.Rd | 9 - man/sropt_test.Rd | 7 man/summary.Rd | 21 +- tests/testthat/test-basic.r | 22 +- tests/testthat/test-distributions.r | 41 ++--- tests/testthat/test-estimation.r | 293 +++++++++++++++++++++++++++--------- tests/testthat/test-tests.r | 288 ++++++++++++++++++++++++----------- tools |only vignettes/AsymptoticMarkowitz.Rnw |only vignettes/SharpeR.Rnw | 1 vignettes/SharpeR.bib | 32 +++ vignettes/SharpeRatio.Rnw | 11 - 63 files changed, 1191 insertions(+), 718 deletions(-)
Title: Client for 'Mapzen' and Related Map APIs
Description: Provides an interface to 'Mapzen'-based APIs (including
geocode.earth, Nextzen, and NYC GeoSearch) for geographic search
and geocoding, isochrone calculation, and vector data to draw map tiles.
See <https://mapzen.com/documentation/> for more information. The original
Mapzen has gone out of business, but 'rmapzen' can be set up to work with
any provider who implements the Mapzen API.
Author: Tarak Shah [aut, cre],
Daniel Possenriede [ctb]
Maintainer: Tarak Shah <tarak.shah@gmail.com>
Diff between rmapzen versions 0.4.0 dated 2018-08-28 and 0.4.1 dated 2018-10-07
DESCRIPTION | 12 ++-- MD5 | 18 +++---- NEWS.md | 3 + build/vignette.rds |binary inst/doc/rmapzen-introduction.html | 89 ++++++++++++++++++------------------- man/mz_isochrone.Rd | 4 - man/mz_place.Rd | 3 - man/mz_structured_search.Rd | 6 +- man/mz_tile_coordinates.Rd | 4 - man/search.Rd | 9 ++- 10 files changed, 76 insertions(+), 72 deletions(-)
Title: Rate Limiting for R
Description: Allows to limit the rate at which one or more functions can be called.
Author: Tarak Shah
Maintainer: Tarak Shah <tarak.shah@gmail.com>
Diff between ratelimitr versions 0.4.0 dated 2018-08-28 and 0.4.1 dated 2018-10-07
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 4 ++++ build/vignette.rds |binary inst/doc/introduction.html | 16 ++++++++-------- 5 files changed, 21 insertions(+), 17 deletions(-)
Title: Latent Variable Models for Networks
Description: Latent variable models for network data using fast inferential
procedures.
Author: Isabella Gollini [aut, cre]
Maintainer: Isabella Gollini <igollini.stats@gmail.com>
Diff between lvm4net versions 0.2 dated 2015-04-10 and 0.2.1 dated 2018-10-07
lvm4net-0.2.1/lvm4net/DESCRIPTION | 14 +- lvm4net-0.2.1/lvm4net/MD5 | 59 +++++------ lvm4net-0.2.1/lvm4net/NAMESPACE | 27 ++++- lvm4net-0.2.1/lvm4net/R/PPIgen.R | 2 lvm4net-0.2.1/lvm4net/R/PPInet.R | 2 lvm4net-0.2.1/lvm4net/R/PPIphy.R | 2 lvm4net-0.2.1/lvm4net/R/boxroc.R | 4 lvm4net-0.2.1/lvm4net/R/goflsm.R | 18 +-- lvm4net-0.2.1/lvm4net/R/lsjm.R | 8 - lvm4net-0.2.1/lvm4net/R/lsm.R | 6 - lvm4net-0.2.1/lvm4net/R/lvm4net-package.R | 12 +- lvm4net-0.2.1/lvm4net/R/plotY.R | 4 lvm4net-0.2.1/lvm4net/R/restartlsm.R | 2 lvm4net-0.2.1/lvm4net/README.md | 19 +-- lvm4net-0.2.1/lvm4net/inst/examples/LSJM_GolliniMurphy2016.R |only lvm4net-0.2.1/lvm4net/man/PPIgen.Rd | 5 lvm4net-0.2.1/lvm4net/man/PPInet.Rd | 7 - lvm4net-0.2.1/lvm4net/man/PPIphy.Rd | 5 lvm4net-0.2.1/lvm4net/man/boxroc.Rd | 24 ++-- lvm4net-0.2.1/lvm4net/man/figures |only lvm4net-0.2.1/lvm4net/man/goflsm.Rd | 6 - lvm4net-0.2.1/lvm4net/man/lsjm.Rd | 26 ++-- lvm4net-0.2.1/lvm4net/man/lsm.Rd | 17 +-- lvm4net-0.2.1/lvm4net/man/lvm4net-package.Rd | 9 - lvm4net-0.2.1/lvm4net/man/plot.gofobj.Rd | 5 lvm4net-0.2.1/lvm4net/man/plot.lsjm.Rd | 15 +- lvm4net-0.2.1/lvm4net/man/plot.lsm.Rd | 11 -- lvm4net-0.2.1/lvm4net/man/plotY.Rd | 11 -- lvm4net-0.2.1/lvm4net/man/print.gofobj.Rd | 5 lvm4net-0.2.1/lvm4net/man/rotXtoY.Rd | 3 lvm4net-0.2.1/lvm4net/man/simulateLSM.Rd | 8 - lvm4net-0.2/lvm4net/inst/examples/LSJM_GolliniMurphy2014.R |only 32 files changed, 174 insertions(+), 162 deletions(-)
Title: Extract Colors from Windows BMP, JPEG, PNG, TIFF, and SVG Format
Images
Description: Extracts colors from various image types, returns customized reports and plots treemaps
and 3D scatterplots of image compositions. Selected colors and color ranges can be excluded from
the analysis.
Author: David Zumbach [aut, cre]
Maintainer: David Zumbach <david.zumbach@gfzb.ch>
Diff between colorfindr versions 0.1.0 dated 2018-09-30 and 0.1.3 dated 2018-10-07
DESCRIPTION | 12 +-- MD5 | 16 +++-- NAMESPACE | 10 +++ NEWS |only R/get_colors.R | 8 +- R/plot_colors.R | 2 R/plot_colors_3d.R |only R/utils.R | 158 +++++++++++++++++++++++++++++++++++++++++++++++--- inst/extdata/pic5.png |only man/plot_colors.Rd | 2 man/plot_colors_3d.Rd |only 11 files changed, 183 insertions(+), 25 deletions(-)
Title: A Wordcloud Geom for 'ggplot2'
Description: Provides a wordcloud text geom for 'ggplot2'. Texts
are placed so that they do not overlap as in 'ggrepel'. The algorithm
used is a variation around the one of 'wordcloud2.js'.
Author: Erwan Le Pennec [aut, cre],
Kamil Slowikowski [aut]
Maintainer: Erwan Le Pennec <lepennec@gmail.com>
Diff between ggwordcloud versions 0.1.0 dated 2018-09-30 and 0.2.0 dated 2018-10-07
DESCRIPTION | 11 +- MD5 | 37 ++++--- NAMESPACE | 5 + NEWS.md | 5 + R/RcppExports.R | 4 R/geom-text-wordcloud.R | 152 +++++++++++++++++++++++-------- R/ggwordcloud-wrapper.R |only R/ggwordcloud.R | 8 + README.md | 5 - build/vignette.rds |binary inst/doc/ggwordcloud.R | 32 ++++-- inst/doc/ggwordcloud.Rmd | 44 +++++--- inst/doc/ggwordcloud.html | 103 +++++++++++---------- man/figures/README-unnamed-chunk-3-1.png |binary man/geom_text_wordcloud.Rd | 33 ++++-- man/ggwordcloud-package.Rd |only man/ggwordcloud.Rd | 57 ++++++++++- man/ggwordcloud2.Rd |only src/RcppExports.cpp | 9 + src/wordcloud_boxes.cpp | 96 ++++++++++++++----- vignettes/ggwordcloud.Rmd | 44 +++++--- 21 files changed, 439 insertions(+), 206 deletions(-)
Title: Build and Run Spatially Explicit Agent-Based Models
Description: Build and run spatially explicit
agent-based models using only the R platform. 'NetLogoR' follows the same
framework as the 'NetLogo' software
(Wilensky, 1999 <http://ccl.northwestern.edu/netlogo/>) and is a translation
in R of the structure and functions of 'NetLogo'.
'NetLogoR' provides new R classes to define model agents and functions to
implement spatially explicit agent-based models in the R environment.
This package allows benefiting of the fast and easy coding phase from the
highly developed 'NetLogo' framework, coupled with the versatility, power
and massive resources of the R software.
Examples of three models (Ants <http://ccl.northwestern.edu/netlogo/models/Ants>,
Butterfly (Railsback and Grimm, 2012) and Wolf-Sheep-Predation
<http://ccl.northwestern.edu/netlogo/models/WolfSheepPredation>) written using
'NetLogoR' are available. The 'NetLogo' code of the original version of these
models is provided alongside.
A programming guide inspired from the 'NetLogo' Programming Guide
(<https://ccl.northwestern.edu/netlogo/docs/programming.html>) and a dictionary
of 'NetLogo' primitives (<https://ccl.northwestern.edu/netlogo/docs/dictionary.html>)
equivalences are also available.
NOTE: To increment 'time', these functions can use a for loop or can be
integrated with a discrete event simulator, such as 'SpaDES'
(<https://cran.r-project.org/package=SpaDES>).
The suggested package 'fastshp' can be installed with
'install.packages("fastshp", repos = "https://rforge.net", type = "source")'.
Author: Sarah Bauduin [aut, cre] (<https://orcid.org/0000-0002-3252-5894>),
Eliot J B McIntire [aut] (<https://orcid.org/0000-0002-6914-8316>),
Alex M Chubaty [aut] (<https://orcid.org/0000-0001-7146-8135>),
Her Majesty the Queen in Right of Canada, as represented by the
Minister of Natural Resources Canada [cph]
Maintainer: Sarah Bauduin <sarahbauduin@hotmail.fr>
Diff between NetLogoR versions 0.3.3 dated 2018-06-07 and 0.3.4 dated 2018-10-07
DESCRIPTION | 23 ++++++------- MD5 | 58 ++++++++++++++++----------------- NEWS.md | 4 ++ build/vignette.rds |binary man/NLset.Rd | 7 ++- man/NetLogoR-package.Rd | 6 +-- man/agentClasses-class.Rd | 2 - man/agentMatrix-class.Rd | 1 man/bbox.Rd | 2 - man/cellFromPxcorPycor.Rd | 3 + man/createTurtles.Rd | 4 +- man/createWorld.Rd | 4 +- man/diffuse.Rd | 4 +- man/downhill.Rd | 4 +- man/extract-methods.Rd | 30 +++-------------- man/face.Rd | 3 + man/inCone.Rd | 4 +- man/layoutCircle.Rd | 4 +- man/maxNof.Rd | 3 + man/minNof.Rd | 3 + man/patch.Rd | 4 +- man/patchDistDir.Rd | 4 +- man/patchLeft.Rd | 4 +- man/quickPlot-methods.Rd | 9 +---- man/setXY.Rd | 8 ++-- man/sprout.Rd | 3 + man/subHeadings.Rd | 6 ++- man/wrap.Rd | 10 +++-- tests/testthat/test-agentMatrix.R | 4 +- tests/testthat/test-turtle-functions.R | 2 + 30 files changed, 108 insertions(+), 115 deletions(-)
Title: Metrics of Difference for Comparing Pairs of Maps or Pairs of
Variables
Description: Metrics of difference for comparing pairs of variables or pairs of maps representing real or categorical variables at original and multiple resolutions.
Author: Robert Gilmore Pontius Jr. <rpontius@clarku.edu>, Ali Santacruz <asantacruzdelgado@clarku.edu>
Maintainer: Ali Santacruz <amsantac@unal.edu.co>
Diff between diffeR versions 0.0-4 dated 2015-12-29 and 0.0-5 dated 2018-10-07
diffeR-0.0-4/diffeR/R/exchangeDij.R |only diffeR-0.0-4/diffeR/R/exchangeDj.R |only diffeR-0.0-4/diffeR/R/overallAllocD.R |only diffeR-0.0-4/diffeR/R/overallDiff.R |only diffeR-0.0-4/diffeR/R/overallDiffCatj.R |only diffeR-0.0-4/diffeR/R/overallExchangeD.R |only diffeR-0.0-4/diffeR/R/overallQtyD.R |only diffeR-0.0-4/diffeR/R/overallShiftD.R |only diffeR-0.0-4/diffeR/R/quantityDj.R |only diffeR-0.0-4/diffeR/R/shiftDj.R |only diffeR-0.0-4/diffeR/man/exchangeDij.Rd |only diffeR-0.0-4/diffeR/man/exchangeDj.Rd |only diffeR-0.0-4/diffeR/man/overallAllocD.Rd |only diffeR-0.0-4/diffeR/man/overallDiff.Rd |only diffeR-0.0-4/diffeR/man/overallDiffCatj.Rd |only diffeR-0.0-4/diffeR/man/overallExchangeD.Rd |only diffeR-0.0-4/diffeR/man/overallQtyD.Rd |only diffeR-0.0-4/diffeR/man/overallShiftD.Rd |only diffeR-0.0-4/diffeR/man/quantityDj.Rd |only diffeR-0.0-4/diffeR/man/shiftDj.Rd |only diffeR-0.0-5/diffeR/DESCRIPTION | 19 ++-- diffeR-0.0-5/diffeR/MD5 | 62 +++++--------- diffeR-0.0-5/diffeR/NAMESPACE | 7 - diffeR-0.0-5/diffeR/R/MAD.R | 2 diffeR-0.0-5/diffeR/R/MADscatterplot.R | 2 diffeR-0.0-5/diffeR/R/categoryComponentsPlot.R |only diffeR-0.0-5/diffeR/R/categorySourcesPlot.R |only diffeR-0.0-5/diffeR/R/crosstabm.R | 2 diffeR-0.0-5/diffeR/R/diffMetrics.R |only diffeR-0.0-5/diffeR/R/diffTablej.R | 30 ++++--- diffeR-0.0-5/diffeR/R/differenceMR.R | 92 +++++++++++----------- diffeR-0.0-5/diffeR/R/memberships.R | 12 +- diffeR-0.0-5/diffeR/R/overallComponentsPlot.R | 25 ++++- diffeR-0.0-5/diffeR/R/overallSourcesPlot.R |only diffeR-0.0-5/diffeR/man/MAD.Rd | 2 diffeR-0.0-5/diffeR/man/MADscatterplot.Rd | 2 diffeR-0.0-5/diffeR/man/categoryComponentsPlot.Rd |only diffeR-0.0-5/diffeR/man/categorySourcesPlot.Rd |only diffeR-0.0-5/diffeR/man/crosstabm.Rd | 2 diffeR-0.0-5/diffeR/man/diffMetrics.Rd |only diffeR-0.0-5/diffeR/man/diffTablej.Rd | 11 +- diffeR-0.0-5/diffeR/man/diffeR-package.Rd | 17 +--- diffeR-0.0-5/diffeR/man/differenceMR.Rd | 4 diffeR-0.0-5/diffeR/man/memberships.Rd | 2 diffeR-0.0-5/diffeR/man/overallComponentsPlot.Rd | 31 +++++-- diffeR-0.0-5/diffeR/man/overallSourcesPlot.Rd |only 46 files changed, 176 insertions(+), 148 deletions(-)
Title: Extract Text from Microsoft Word Documents
Description: Wraps the 'AntiWord' utility to extract text from Microsoft
Word documents. The utility only supports the old 'doc' format, not the
new xml based 'docx' format. Use the 'xml2' package to read the latter.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>),
Adri van Os [cph] (Author 'antiword' utility)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between antiword versions 1.1 dated 2017-04-29 and 1.2 dated 2018-10-07
DESCRIPTION | 14 +++++++------- MD5 | 8 ++++---- NEWS | 3 +++ src/Makevars | 14 ++++++++------ src/libantiword/summary.c | 6 +++--- 5 files changed, 25 insertions(+), 20 deletions(-)
Title: Equi-Rank Hierarchical Clustering Validation
Description: Assesses the statistical significance of clusters for a given dataset through bootstrapping and hypothesis testing of a given matrix of empirical Spearman's rho, based on the technique of S. Gaiser et al. (2010) <doi:10.1016/j.jmva.2010.07.008>.
Author: Simon-Pierre Gadoury <spgadou@me.com>
Maintainer: Simon-Pierre Gadoury <spgadou@me.com>
Diff between erhcv versions 0.1.2 dated 2018-06-12 and 0.1.3 dated 2018-10-07
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/ClusterNodeSelection.R | 6 +++--- R/VerifyTree.R | 2 +- build/partial.rdb |binary inst/REFERENCES.bib | 2 +- man/ClusterNodeSelection.Rd | 2 +- man/VerifyTree.Rd | 2 +- 8 files changed, 17 insertions(+), 17 deletions(-)
Title: Secure Shell (SSH) Client for R
Description: Connect to a remote server over SSH to transfer files via SCP,
setup a secure tunnel, or run a command or script on the host while
streaming stdout and stderr directly to the client.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between ssh versions 0.2 dated 2018-06-04 and 0.3 dated 2018-10-07
DESCRIPTION | 12 +++++++----- MD5 | 29 +++++++++++++++-------------- NAMESPACE | 2 ++ NEWS |only R/connect.R | 7 +++++++ R/exec.R | 2 +- build/vignette.rds |binary configure | 2 +- inst/doc/intro.html | 33 ++++++++++++++++++--------------- man/ssh.Rd | 3 +++ src/Makevars.win | 2 +- src/command.c | 2 +- src/myssh.h | 7 +++++++ src/scp.c | 8 ++++---- src/session.c | 11 +++++++---- tools/winlibs.R | 4 ++-- 16 files changed, 76 insertions(+), 48 deletions(-)
Title: Tools to Quickly and Neatly Summarize Data
Description: Data frame summaries, cross-tabulations,
weight-enabled frequency tables and common univariate
statistics in concise tables available in a variety of
formats (plain ASCII, Markdown and HTML). A good
point-of-entry for exploring data, both for experienced
and new R users.
Author: Dominic Comtois
Maintainer: Dominic Comtois <dominic.comtois@gmail.com>
Diff between summarytools versions 0.8.7 dated 2018-07-23 and 0.8.8 dated 2018-10-07
summarytools-0.8.7/summarytools/man/label-set.Rd |only summarytools-0.8.8/summarytools/DESCRIPTION | 8 +- summarytools-0.8.8/summarytools/MD5 | 35 ++++------ summarytools-0.8.8/summarytools/NEWS | 7 ++ summarytools-0.8.8/summarytools/R/descr.R | 35 ++-------- summarytools-0.8.8/summarytools/R/dfSummary.R | 19 +++-- summarytools-0.8.8/summarytools/R/label.R | 27 +++---- summarytools-0.8.8/summarytools/R/parse_args.R | 16 ++-- summarytools-0.8.8/summarytools/R/print.summarytools.R | 6 + summarytools-0.8.8/summarytools/data/examens.RData |binary summarytools-0.8.8/summarytools/data/exams.RData |binary summarytools-0.8.8/summarytools/data/tabagisme.RData |binary summarytools-0.8.8/summarytools/inst/doc/Introduction.html | 6 - summarytools-0.8.8/summarytools/inst/doc/Recommendations-rmarkdown.html | 8 +- summarytools-0.8.8/summarytools/man/descr.Rd | 6 - summarytools-0.8.8/summarytools/man/dfSummary.Rd | 10 +- summarytools-0.8.8/summarytools/man/label.Rd | 14 ++-- summarytools-0.8.8/summarytools/man/parse_args.Rd | 2 summarytools-0.8.8/summarytools/man/unlabel.Rd | 3 19 files changed, 101 insertions(+), 101 deletions(-)
Title: Functional Time Series Analysis
Description: Functions for visualizing, modeling, forecasting and hypothesis testing of functional time series.
Author: Rob J Hyndman and Han Lin Shang
Maintainer: Han Lin Shang <hanlin.shang@anu.edu.au>
Diff between ftsa versions 5.0 dated 2018-09-15 and 5.1 dated 2018-10-07
ChangeLog | 4 ++++ DESCRIPTION | 10 +++++----- MD5 | 4 ++-- 3 files changed, 11 insertions(+), 7 deletions(-)
Title: Analysis of Aerobiological Data
Description: Supports analysis of aerobiological data.
Available features include determination of pollen season limits,
replacement of outliers (Kasprzyk and Walanus (2014) <doi:10.1007/s10453-014-9332-8>),
and calculation of growing degree days.
Author: Jakub Nowosad [aut, cre] (<https://orcid.org/0000-0002-1057-3721>)
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between pollen versions 0.70.0 dated 2018-02-25 and 0.71.0 dated 2018-10-07
pollen-0.70.0/pollen/R/pollen.R |only pollen-0.70.0/pollen/man/pollen.Rd |only pollen-0.71.0/pollen/DESCRIPTION | 8 pollen-0.71.0/pollen/MD5 | 30 - pollen-0.71.0/pollen/R/outliers_replacer.R | 4 pollen-0.71.0/pollen/R/pollen-package.R |only pollen-0.71.0/pollen/R/pollen_count.R | 2 pollen-0.71.0/pollen/R/pollen_season.R | 2 pollen-0.71.0/pollen/README.md | 32 + pollen-0.71.0/pollen/build/vignette.rds |binary pollen-0.71.0/pollen/inst/doc/intro.R | 14 pollen-0.71.0/pollen/inst/doc/intro.Rmd | 51 ++ pollen-0.71.0/pollen/inst/doc/intro.html | 515 ++++++++++++++++++-------- pollen-0.71.0/pollen/man/outliers_replacer.Rd | 4 pollen-0.71.0/pollen/man/pollen-package.Rd |only pollen-0.71.0/pollen/man/pollen_count.Rd | 2 pollen-0.71.0/pollen/man/pollen_season.Rd | 2 pollen-0.71.0/pollen/vignettes/intro.Rmd | 51 ++ 18 files changed, 512 insertions(+), 205 deletions(-)
Title: Simulation with Kernel Density Estimation
Description: Generates random values from a univariate and multivariate continuous distribution by using kernel density estimation based on a sample. Duong (2017) <doi:10.18637/jss.v021.i07>, Christian P. Robert and George Casella (2010 ISBN:978-1-4419-1575-7) <doi:10.1007/978-1-4419-1576-4>.
Author: MAKHGAL Ganbold [aut, cre],
BAYARBAATAR Amgalan [aut]
Maintainer: MAKHGAL Ganbold <makhgal@seas.num.edu.mn>
Diff between simukde versions 1.0.0 dated 2018-07-05 and 1.1.0 dated 2018-10-07
DESCRIPTION | 21 +- MD5 | 20 +- NAMESPACE | 1 NEWS.md |only R/functions.R | 280 +++++++++++++++++++++++++++++++++++-- R/simukde.R | 6 README.md | 39 ++++- inst/CITATION | 4 man/find_best_fit.Rd |only man/simukde.Rd | 10 + man/simulate_kde.Rd | 36 +++- tests/testthat/test-simulate_kde.R | 37 ++++ 12 files changed, 402 insertions(+), 52 deletions(-)
Title: 'htmlwidget' for Interactive Views of R Lists
Description: R lists, especially nested lists, can be very difficult to
visualize or represent. Sometimes 'str()' is not enough, so this suite of
htmlwidgets is designed to help see, understand, and maybe even modify your R
lists. The function 'reactjson()' requires a package
'reactR' that can be installed from CRAN or <https://github.com/timelyportfolio/reactR>.
Author: Jos de Jong [aut, cph] (jsoneditor.js library in
htmlwidgets/jsoneditor, http://github.com/josdejong/jsoneditor/),
Mac Gainer [aut, cph] (react-json-view library in
htmlwidgets/react-json, https://github.com/mac-s-g/react-json-view),
Kent Russell [aut, cre] (R interface)
Maintainer: Kent Russell <kent.russell@timelyportfolio.com>
Diff between listviewer versions 2.0.0 dated 2018-03-25 and 2.1.0 dated 2018-10-07
DESCRIPTION | 8 MD5 | 22 NEWS.md | 6 R/reactjson.R | 58 README.md | 29 inst/htmlwidgets/jsonedit.yaml | 2 inst/htmlwidgets/jsoneditor/dist/img/jsoneditor-icons.svg | 1629 ++++++-------- inst/htmlwidgets/jsoneditor/dist/jsoneditor.min.css | 7 inst/htmlwidgets/jsoneditor/dist/jsoneditor.min.js | 90 inst/htmlwidgets/reactjson.js | 23 inst/htmlwidgets/reactjson/dist/main.js | 2 man/reactjson.Rd | 48 12 files changed, 954 insertions(+), 970 deletions(-)
Title: Comprehensive TIFF I/O with Full Support for 'ImageJ' TIFF Files
Description: General purpose TIFF file I/O for R users. Currently the only such
package with read and write support for TIFF files with floating point
(real-numbered) pixels, and the only package that can correctly import TIFF
files that were saved from 'ImageJ' and write TIFF files than can be
correctly read by 'ImageJ' <https://imagej.nih.gov/ij/>.
Also supports text image I/O.
Author: Rory Nolan [aut, cre] (<https://orcid.org/0000-0002-5239-4043>),
Kent Johnson [aut],
Simon Urbanek [ctb],
Sergi Padilla-Parra [ths] (<https://orcid.org/0000-0002-8010-9481>),
Jeroen Ooms [rev, ctb] (<https://orcid.org/0000-0002-4035-0289>),
Jon Clayden [rev] (<https://orcid.org/0000-0002-6608-0619>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between ijtiff versions 1.4.1 dated 2018-09-24 and 1.4.2 dated 2018-10-07
ijtiff-1.4.1/ijtiff/inst/img/bad_ij3.tif |only ijtiff-1.4.2/ijtiff/DESCRIPTION | 6 ijtiff-1.4.2/ijtiff/MD5 | 47 +-- ijtiff-1.4.2/ijtiff/NAMESPACE | 1 ijtiff-1.4.2/ijtiff/NEWS.md | 7 ijtiff-1.4.2/ijtiff/R/class_constructors.R | 4 ijtiff-1.4.2/ijtiff/R/read.R | 2 ijtiff-1.4.2/ijtiff/R/utils.R | 14 ijtiff-1.4.2/ijtiff/R/write.R | 6 ijtiff-1.4.2/ijtiff/configure | 17 - ijtiff-1.4.2/ijtiff/inst/doc/reading-and-writing-images.html | 20 - ijtiff-1.4.2/ijtiff/inst/doc/text-images.html | 4 ijtiff-1.4.2/ijtiff/inst/doc/the-imagej-problem.html | 4 ijtiff-1.4.2/ijtiff/inst/img/Rlogo-banana-1-2.tif |binary ijtiff-1.4.2/ijtiff/inst/img/Rlogo-banana-red_green_blue.tif |binary ijtiff-1.4.2/ijtiff/inst/img/Rlogo-banana.tif |binary ijtiff-1.4.2/ijtiff/inst/img/Rlogo-grey.txt | 152 +++++----- ijtiff-1.4.2/ijtiff/inst/img/bad_ij1.tif |binary ijtiff-1.4.2/ijtiff/inst/img/bad_ij2.tif |binary ijtiff-1.4.2/ijtiff/man/as_EBImage.Rd | 14 ijtiff-1.4.2/ijtiff/man/ijtiff_img.Rd | 3 ijtiff-1.4.2/ijtiff/man/write_tif.Rd | 4 ijtiff-1.4.2/ijtiff/src/RcppExports.cpp | 8 ijtiff-1.4.2/ijtiff/tests/testthat/test-as_EBImage-examples.R | 1 ijtiff-1.4.2/ijtiff/tests/testthat/test_io.R | 13 25 files changed, 172 insertions(+), 155 deletions(-)
Title: Discontinuous Regression and Image Processing
Description: This is a collection of functions for discontinuous regression
analysis and image processing (DRIP). A recent addition is the
blind image deblurring via jump-preserving extrapolation.
Author: Yicheng Kang <kangx276@umn.edu>
Maintainer: Yicheng Kang <kangx276@umn.edu>
Diff between DRIP versions 1.3 dated 2018-06-01 and 1.4 dated 2018-10-07
DRIP-1.3/DRIP/src/Makevars |only DRIP-1.4/DRIP/DESCRIPTION | 11 ++++++----- DRIP-1.4/DRIP/MD5 | 10 +++++++--- DRIP-1.4/DRIP/NAMESPACE | 2 +- DRIP-1.4/DRIP/cleanup |only DRIP-1.4/DRIP/configure |only DRIP-1.4/DRIP/configure.ac |only DRIP-1.4/DRIP/src/Makevars.in |only DRIP-1.4/DRIP/src/Makevars.win |only 9 files changed, 14 insertions(+), 9 deletions(-)