Title: Raster Time Series Analysis
Description: This framework aims to provide classes and methods for manipulating and processing of raster time series data (e.g. a time series of satellite images).
Author: Babak Naimi
Maintainer: Babak Naimi <naimi.b@gmail.com>
Diff between rts versions 1.0-45 dated 2018-03-18 and 1.0-47 dated 2018-10-19
DESCRIPTION | 8 ++++---- MD5 | 12 +++++++----- NAMESPACE | 2 +- R/VHIdownload.R |only R/cellFrom.R | 47 ++++++++++++++++++++++------------------------- man/ModisDownload.Rd | 2 +- man/VHPdownload.Rd |only man/cellFromXY.Rd | 2 +- 8 files changed, 36 insertions(+), 37 deletions(-)
Title: Interface to the Global 'Biodiversity' Information Facility API
Description: A programmatic interface to the Web Service methods
provided by the Global Biodiversity Information Facility ('GBIF';
<https://www.gbif.org/developer/summary>). 'GBIF' is a database
of species occurrence records from sources all over the globe.
'rgbif' includes functions for searching for taxonomic names,
retrieving information on data providers, getting species occurrence
records, getting counts of occurrence records, and using the 'GBIF'
tile map service to make 'rasters' summarizing huge amounts of data.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Vijay Barve [ctb],
Dan Mcglinn [ctb],
Damiano Oldoni [ctb],
Laurens Geffert [ctb],
Karthik Ram [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rgbif versions 1.0.2 dated 2018-07-06 and 1.1.0 dated 2018-10-19
DESCRIPTION | 13 MD5 | 245 +++++++++---- NAMESPACE | 1 NEWS.md | 20 + R/download_queue.R | 8 R/elevation.r | 2 R/gbif_issues.R | 11 R/map_fetch.R | 157 ++++---- R/name_issues.R |only R/name_usage.r | 5 R/occ_download_queue.R | 6 R/occ_get.r | 4 R/zzz.r | 54 ++- README.md | 222 ++++++------ inst/doc/issues_vignette.Rmd | 286 ++++++++------- inst/doc/issues_vignette.html | 286 ++++++++------- inst/doc/rgbif_vignette.Rmd | 343 +++++++++---------- inst/doc/rgbif_vignette.html | 345 +++++++++---------- inst/doc/taxonomic_names.Rmd | 28 - inst/doc/taxonomic_names.html | 28 - inst/vign/figure/gbifmap1-1.png |binary inst/vign/issues_vignette.md | 286 ++++++++------- inst/vign/rgbif_vignette.Rmd | 4 inst/vign/rgbif_vignette.md | 343 +++++++++---------- inst/vign/taxonomic_names.md | 28 - man/gbif_bbox2wkt.Rd | 3 man/gbif_issues.Rd | 3 man/gbif_oai.Rd | 4 man/installations.Rd | 38 +- man/map_fetch.Rd | 56 ++- man/name_issues.Rd |only man/name_lookup.Rd | 90 ++--- man/name_suggest.Rd | 4 man/name_usage.Rd | 11 man/networks.Rd | 39 +- man/nodes.Rd | 34 - man/occ_count.Rd | 9 man/occ_data.Rd | 55 +-- man/occ_download.Rd | 4 man/occ_download_get.Rd | 3 man/occ_download_import.Rd | 3 man/occ_metadata.Rd | 4 man/occ_search.Rd | 60 +-- tests/fixtures |only tests/testthat/helper-rgbif.R |only tests/testthat/test-count_facet.r | 45 +- tests/testthat/test-dataset_metrics.r | 38 +- tests/testthat/test-dataset_search.r | 115 +++--- tests/testthat/test-dataset_suggest.r | 59 +-- tests/testthat/test-datasets.r | 87 ++-- tests/testthat/test-elevation.R | 41 +- tests/testthat/test-enumeration.r | 36 +- tests/testthat/test-gbif_issues.R |only tests/testthat/test-installations.r | 71 ++- tests/testthat/test-map_fetch.R | 10 tests/testthat/test-name_backbone.r | 15 tests/testthat/test-name_issues.R |only tests/testthat/test-name_lookup.r | 167 ++++----- tests/testthat/test-name_suggest.r | 63 +-- tests/testthat/test-name_usage.r | 386 +++++++++++---------- tests/testthat/test-networks.r | 33 - tests/testthat/test-nodes.r | 58 +-- tests/testthat/test-oai.R | 90 ++--- tests/testthat/test-occ_count.r | 79 ++-- tests/testthat/test-occ_data.R | 520 ++++++++++++++-------------- tests/testthat/test-occ_download_queue.R |only tests/testthat/test-occ_facet.R | 63 +-- tests/testthat/test-occ_get.r | 115 ++++-- tests/testthat/test-occ_issues.R | 90 ++--- tests/testthat/test-occ_metadata.r | 68 +-- tests/testthat/test-occ_search.r | 558 ++++++++++++++++--------------- tests/testthat/test-occ_spellcheck.R | 32 - tests/testthat/test-organizations.r | 40 +- tests/testthat/test-parsenames.r | 39 +- tests/testthat/test-wkt_large.R | 56 +-- vignettes/issues_vignette.Rmd | 286 ++++++++------- vignettes/rgbif_vignette.Rmd | 343 +++++++++---------- vignettes/taxonomic_names.Rmd | 28 - 78 files changed, 3601 insertions(+), 3175 deletions(-)
Title: Hidden State Speciation and Extinction
Description: Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification. Beaulieu and O'Meara (2016) <doi:10.1093/sysbio/syw022>.
Author: Jeremy Beaulieu [aut, cre],
Brian O'Meara [aut],
Daniel Caetano [aut]
Maintainer: Jeremy Beaulieu <jbeaulieu@nimbios.org>
Diff between hisse versions 1.8.7 dated 2018-10-18 and 1.8.8 dated 2018-10-19
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- build/vignette.rds |binary inst/doc/GeoHiSSE-vignette.R | 1 - inst/doc/GeoHiSSE-vignette.Rmd | 6 ++---- inst/doc/GeoHiSSE-vignette.pdf |binary inst/doc/MuHiSSE-vignette.Rmd | 6 +++--- inst/doc/MuHiSSE-vignette.pdf |binary vignettes/GeoHiSSE-vignette.Rmd | 6 ++---- vignettes/GeoHiSSE-vignette.html | 4 ++-- vignettes/MuHiSSE-vignette.Rmd | 6 +++--- vignettes/MuHiSSE-vignette.html | 4 ++-- 12 files changed, 29 insertions(+), 34 deletions(-)
Title: Models Spatially Continuous and Discrete Population Genetic
Structure
Description: A method for modeling genetic data as a combination of discrete
layers, within each of which relatedness may decay continuously with geographic
distance. This package contains code for running analyses (which are implemented
in the modeling language 'rstan') and visualizing and interpreting output. See the
paper for more details on the model and its utility.
Author: Gideon Bradburd [aut, cre]
Maintainer: Gideon Bradburd <bradburd@msu.edu>
Diff between conStruct versions 1.0.0 dated 2018-09-18 and 1.0.1 dated 2018-10-19
DESCRIPTION | 15 MD5 | 28 - NEWS.md | 9 R/format.data.R | 134 +++++-- R/plot.output.R | 4 inst/doc/format-data.R | 9 inst/doc/format-data.Rmd | 46 ++ inst/doc/format-data.html | 518 +++++++++++++++++++++++++----- inst/doc/model-comparison.html | 680 ++++++++++++++++++++++++++-------------- inst/doc/run-conStruct.html | 390 +++++++++++++++++----- inst/doc/visualize-results.html | 466 +++++++++++++++++++-------- man/structure2conStruct.Rd | 46 +- src/Makevars | 1 src/Makevars.win | 2 vignettes/format-data.Rmd | 46 ++ 15 files changed, 1772 insertions(+), 622 deletions(-)
Title: Confidence or Prediction Intervals, Quantiles, and Probabilities
for Statistical Models
Description: Functions to append confidence intervals, prediction intervals,
and other quantities of interest to data frames. All appended quantities
are for the response variable, after conditioning on the model and covariates.
This package has a data frame first syntax that allows for easy piping.
Currently supported models include (log-) linear, (log-) linear mixed,
generalized linear models, generalized linear mixed models, and
accelerated failure time models.
Author: John Haman [cre, aut],
Matthew Avery [aut],
Institute for Defense Analyses [cph]
Maintainer: John Haman <jhaman@ida.org>
Diff between ciTools versions 0.3.0 dated 2017-12-24 and 0.5.0 dated 2018-10-19
DESCRIPTION | 17 MD5 | 116 +- NAMESPACE | 80 - R/add_ci.R | 221 ++-- R/add_ci_glm.R | 373 +++--- R/add_ci_glmer.R |only R/add_ci_lmer.R | 314 ++--- R/add_ci_lognormal.R | 187 +-- R/add_ci_survreg.R |only R/add_pi.R | 18 R/add_pi_glm.R | 356 +++--- R/add_pi_glmer.R |only R/add_pi_lmer.R | 35 R/add_pi_negbin.R | 294 ++--- R/add_pi_survreg.R |only R/add_probs.R | 29 R/add_probs_glm.R | 362 +++--- R/add_probs_glmer.R |only R/add_probs_lmer.R | 32 R/add_probs_survreg.R |only R/add_quantile.R | 174 +-- R/add_quantile_glm.R | 268 ++-- R/add_quantile_glmer.R |only R/add_quantile_lmer.R | 18 R/add_quantile_survreg.R |only R/helper_functions.R | 265 ++-- build/vignette.rds |binary inst/doc/ciTools-binomial-vignette.R | 94 - inst/doc/ciTools-binomial-vignette.Rmd | 396 +++---- inst/doc/ciTools-binomial-vignette.html | 640 +++++++---- inst/doc/ciTools-demo.R | 168 +-- inst/doc/ciTools-demo.html | 1345 ++++++++++++++---------- inst/doc/ciTools-glm-vignette.R | 514 ++++----- inst/doc/ciTools-glm-vignette.Rmd | 36 inst/doc/ciTools-glm-vignette.html | 1745 +++++++++++++++++--------------- inst/doc/citools-merMod-vignette.R | 526 ++++----- inst/doc/citools-merMod-vignette.html | 1038 +++++++++++-------- man/add_ci.Rd | 178 +-- man/add_ci.glm.Rd | 169 +-- man/add_ci.glmerMod.Rd |only man/add_ci.lm.Rd | 140 +- man/add_ci.lmerMod.Rd | 162 +- man/add_ci.negbin.Rd | 154 +- man/add_ci.survreg.Rd |only man/add_pi.Rd | 156 +- man/add_pi.glm.Rd | 138 +- man/add_pi.glmerMod.Rd |only man/add_pi.lm.Rd | 148 +- man/add_pi.lmerMod.Rd | 160 +- man/add_pi.negbin.Rd | 140 +- man/add_pi.survreg.Rd |only man/add_probs.Rd | 180 +-- man/add_probs.glm.Rd | 190 +-- man/add_probs.glmerMod.Rd |only man/add_probs.lm.Rd | 126 +- man/add_probs.lmerMod.Rd | 168 +-- man/add_probs.negbin.Rd | 114 +- man/add_probs.survreg.Rd |only man/add_quantile.Rd | 162 +- man/add_quantile.glm.Rd | 150 +- man/add_quantile.glmerMod.Rd |only man/add_quantile.lm.Rd | 126 +- man/add_quantile.lmerMod.Rd | 170 +-- man/add_quantile.negbin.Rd | 108 - man/add_quantile.survreg.Rd |only vignettes/ciTools-binomial-vignette.Rmd | 396 +++---- vignettes/ciTools-glm-vignette.Rmd | 36 67 files changed, 7013 insertions(+), 6119 deletions(-)
Title: Access to Current and Historical Basketball Data
Description: Provides simple functions for accessing data/tables on
<http://www.basketball-reference.com>.
Author: Ryan Elmore [cre, aut],
Peter DeWitt [ctb]
Maintainer: Ryan Elmore <rtelmore@gmail.com>
Diff between ballr versions 0.2.1 dated 2018-07-16 and 0.2.2 dated 2018-10-19
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/nba-player-per-game-stats.R | 2 +- README.md | 1 + inst/doc/use-ballr.html | 12 ++++++------ 5 files changed, 16 insertions(+), 15 deletions(-)
Title: Taxonomic Information from 'Wikipedia'
Description: 'Taxonomic' information from 'Wikipedia', 'Wikicommons',
'Wikispecies', and 'Wikidata'. Functions included for getting
taxonomic information from each of the sources just listed, as
well performing taxonomic search.
Author: Scott Chamberlain [aut, cre],
Ethan Welty [aut]
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>
Diff between wikitaxa versions 0.2.0 dated 2017-12-21 and 0.3.0 dated 2018-10-19
DESCRIPTION | 15 LICENSE | 2 MD5 | 61 - NEWS.md | 13 R/wikipedia.R | 10 README.md | 174 +- build/vignette.rds |binary data/wikipedias.rda |binary inst/doc/wikitaxa_vignette.Rmd | 6 inst/doc/wikitaxa_vignette.html | 2226 ++++++++++++++++++++++++++++--------- man/wt_wiki_page.Rd | 1 man/wt_wiki_page_parse.Rd | 5 man/wt_wiki_url_build.Rd | 7 man/wt_wiki_url_parse.Rd | 1 man/wt_wikicommons.Rd | 18 man/wt_wikipedia.Rd | 15 man/wt_wikispecies.Rd | 18 tests/fixtures |only tests/testthat/helper-wikitaxa.R |only tests/testthat/test-wikicommons.R | 90 - tests/testthat/test-wikipedia.R | 88 - tests/testthat/test-wikispecies.R | 90 - tests/testthat/test-wt_wiki_page.R | 48 vignettes/wikitaxa_vignette.Rmd | 6 24 files changed, 2100 insertions(+), 794 deletions(-)
Title: R Package Installation from Remote Repositories, Including
'GitHub'
Description: Download and install R packages stored in 'GitHub',
'BitBucket', or plain 'subversion' or 'git' repositories. This package
is a lightweight replacement of the 'install_*' functions in 'devtools'.
Indeed most of the code was copied over from 'devtools'.
Author: Gábor Csárdi [aut, cre],
Hadley Wickham [aut],
Winston Chang [aut],
Jim Hester [aut],
RStudio [cph],
Martin Morgan [aut],
Dan Tenenbaum [aut],
Mango Solutions [cph]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between remotes versions 2.0.0 dated 2018-10-11 and 2.0.1 dated 2018-10-19
DESCRIPTION | 6 - MD5 | 31 +++++----- NAMESPACE | 3 NEWS.md | 20 ++++++ R/cran.R | 42 ++++++++++--- R/deps.R | 68 +++++++++++++++------- R/github.R | 64 ++++++++++++++++++-- R/install-remote.R | 10 ++- R/submodule.R | 3 R/utils.R | 40 +++++++++++- inst/doc/dependencies.html | 6 + man/available_packages.Rd |only tests/testthat/github-error-local.txt |only tests/testthat/github-error-travis.txt |only tests/testthat/test-deps.R | 102 +++++++++++++++++++++++++++------ tests/testthat/test-github.R | 20 ++++++ tests/testthat/test-submodule.R | 31 ++++++++-- tests/testthat/test-utils.R | 34 +++++++++++ 18 files changed, 394 insertions(+), 86 deletions(-)
Title: Integrated Tool for Hairping Extraction of RNA Sequences
Description: Simple and integrated tool that automatically extracts and folds all hairpin sequences from raw genome-wide data. It predicts the secondary structure of several overlapped segments, with longer length than the mean length of sequences of interest for the species under processing, ensuring that no one is lost nor inappropriately cut.
Author: Cristian Yones
Maintainer: Cristian Yones <cyones@sinc.unl.edu.ar>
Diff between HextractoR versions 1.2 dated 2018-08-28 and 1.3 dated 2018-10-19
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/uniqueSequences.R | 31 +++++++++++++++++-------------- man/HextractoR.Rd | 3 ++- 4 files changed, 26 insertions(+), 22 deletions(-)
Title: Record 'HTTP' Calls to Disk
Description: Record test suite 'HTTP' requests and replays them during
future runs. A port of the Ruby gem of the same name
(<https://github.com/vcr/vcr/>). Works by hooking into the 'webmockr'
R package for matching 'HTTP' requests by various rules ('HTTP' method,
'URL', query parameters, headers, body, etc.), and then caching
real 'HTTP' responses on disk in 'cassettes'. Subsequent 'HTTP' requests
matching any previous requests in the same 'cassette' use a cached
'HTTP' response.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <sckott@protonmail.com>
Diff between vcr versions 0.1.0 dated 2018-05-14 and 0.2.0 dated 2018-10-19
DESCRIPTION | 13 ++++++------ MD5 | 41 ++++++++++++++++++++------------------ NAMESPACE | 1 NEWS.md | 12 +++++++++++ R/cassette_class.R | 21 +++++++++++++------ R/insert_cassette.R | 2 + R/request_handler-httr.R |only R/request_handler.R | 2 - R/response_class.R | 44 +++++++++++++++++++++++++++++++++++++++++ R/serialize_to_httr.R |only R/use_cassette.R | 16 ++++++++++++++ R/write.R | 2 - README.md | 30 ++++++++++++++------------- build/vignette.rds |binary inst/doc/configuration.html | 11 ++++++---- inst/doc/request_matching.html | 13 +++++++----- inst/doc/vcr_vignette.Rmd | 3 -- inst/doc/vcr_vignette.html | 15 ++++++++----- man/RequestHandlerHttr.Rd |only man/use_cassette.Rd | 25 +++++++++++++++++++---- man/vcr.Rd | 1 man/vcr_configure.Rd | 14 +++++++------ vignettes/vcr_vignette.Rmd | 3 -- 23 files changed, 192 insertions(+), 77 deletions(-)
Title: Infers Novel Immunoglobulin Alleles from Sequencing Data
Description: Infers the V genotype of an individual from immunoglobulin (Ig)
repertoire sequencing data (AIRR-Seq, Rep-Seq). Includes detection of
any novel alleles. This information is then used to correct existing V
allele calls from among the sample sequences.
Citations:
Gadala-Maria, et al (2015) <doi:10.1073/pnas.1417683112>.
Author: Daniel Gadala-Maria [aut],
Susanna Marquez [aut],
Moriah Cohen [aut],
Gur Yaari [aut],
Jason Vander Heiden [ctb, cre],
Steven Kleinstein [aut, cph]
Maintainer: Jason Vander Heiden <jason.vanderheiden@yale.edu>
Diff between tigger versions 0.3.0 dated 2018-10-03 and 0.3.1 dated 2018-10-19
DESCRIPTION | 8 ++-- MD5 | 16 ++++----- NEWS.md | 8 ++++ R/evidence.R | 70 +++++++++++++++++++++++++------------------ R/functions.R | 36 +++++++++++----------- build/vignette.rds |binary inst/doc/Tigger-Vignette.pdf |binary man/generateEvidence.Rd | 2 + man/getMutCount.Rd | 12 +++---- 9 files changed, 87 insertions(+), 65 deletions(-)
Title: Full Text of 'Scholarly' Articles Across Many Data Sources
Description: Provides a single interface to many sources of full text
'scholarly' data, including 'Biomed Central', Public Library of
Science, 'Pubmed Central', 'eLife', 'F1000Research', 'PeerJ',
'Pensoft', 'Hindawi', 'arXiv' 'preprints', and more. Functionality
included for searching for articles, downloading full or partial
text, downloading supplementary materials, converting to various
data formats.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Will Pearse [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between fulltext versions 1.0.1 dated 2018-02-07 and 1.1.0 dated 2018-10-19
DESCRIPTION | 18 +-- MD5 | 114 ++++++++++--------- NAMESPACE | 6 - NEWS.md | 39 ++++++ R/as.ft_data.R |only R/cache.R | 3 R/cache_clean.R |only R/chunks.R | 71 +++++++++--- R/collect.R | 9 - R/defunct.R | 24 +++- R/europe_pmc_utils.R | 4 R/ft_abstract.R | 5 R/ft_browse.R | 79 ------------- R/ft_get.R | 84 +++++++++++--- R/ft_get_si_plugins.R | 4 R/ft_search.R | 78 ++++++++++--- R/ftxt_cache.R | 3 R/fulltext-package.R | 20 ++- R/ma_utils.R | 6 - R/plugins_get.R | 197 ++++++++++++++++++++++++++++++---- R/plugins_get_links.R | 6 - R/plugins_links.R | 3 R/plugins_search.R | 3 R/scopus_utils.R | 113 +++++++++++++++++-- README.md | 30 +++-- build/vignette.rds |binary inst/doc/formats.Rmd | 8 - inst/doc/formats.html | 4 inst/doc/fulltext_vignette.Rmd | 6 - inst/doc/fulltext_vignette.html | 6 - inst/doc/getting_fulltext.Rmd | 24 ++-- inst/doc/getting_fulltext.html | 24 ++-- inst/vign/fulltext_vignette.md | 6 - inst/vign/getting_fulltext.md | 24 ++-- man/as.ft_data.Rd |only man/biorxiv_search.Rd | 3 man/cache.Rd | 9 + man/cache_file_info.Rd |only man/eupmc.Rd | 7 - man/ft_abstract.Rd | 5 man/ft_browse.Rd | 12 -- man/ft_browse_sections-defunct.Rd |only man/ft_chunks.Rd | 2 man/ft_collect.Rd | 9 - man/ft_get.Rd | 43 +++++-- man/ft_get_si.Rd | 10 - man/ft_search.Rd | 82 +++++++++++--- man/ftxt_cache.Rd | 6 - man/fulltext-defunct.Rd | 2 man/fulltext-deprecated.Rd |only man/fulltext-package.Rd | 17 ++ man/microsoft-internals.Rd | 6 - man/scopus_search.Rd | 93 +++++++++++++++- tests/testthat/test-as.ft_data.R |only tests/testthat/test-cache_file_info.R |only tests/testthat/test-ft_browse.R | 18 --- tests/testthat/test-ft_get.r | 18 +++ tests/testthat/test-ft_get_si.r | 96 ++++++++-------- tests/testthat/test-ft_search.R | 10 - vignettes/formats.Rmd | 8 - vignettes/fulltext_vignette.Rmd | 6 - vignettes/getting_fulltext.Rmd | 24 ++-- 62 files changed, 1055 insertions(+), 452 deletions(-)
Title: Bayesian Graphical Models using MCMC
Description: Interface to the JAGS MCMC library.
Author: Martyn Plummer [aut, cre],
Alexey Stukalov [ctb],
Matt Denwood [ctb]
Maintainer: Martyn Plummer <martyn.plummer@gmail.com>
Diff between rjags versions 4-7 dated 2018-10-09 and 4-8 dated 2018-10-19
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- src/init.c | 4 ++-- src/jags.cc | 2 +- 4 files changed, 10 insertions(+), 10 deletions(-)
Title: Multivariate Response Generalized Linear Models
Description: Provides functions that (1) fit multivariate discrete distributions, (2) generate random numbers from multivariate discrete distributions, and (3) run regression and penalized regression on the multivariate categorical response data. Implemented models include: multinomial logit model, Dirichlet multinomial model, generalized Dirichlet multinomial model, and negative multinomial model. Making the best of the minorization-maximization (MM) algorithm and Newton-Raphson method, we derive and implement stable and efficient algorithms to find the maximum likelihood estimates. On a multi-core machine, multi-threading is supported.
Author: Yiwen Zhang <zhangyiwen1015@gmail.com> and Hua Zhou <huazhou@ucla.edu>
Maintainer: Juhyun Kim <juhkim111@ucla.edu>
Diff between MGLM versions 0.1.0 dated 2018-01-21 and 0.2.0 dated 2018-10-19
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/MGLMreg.R | 1 + R/aaclasses.R | 10 ++++++---- R/show.MGLM.R | 11 +++++++---- build/vignette.rds |binary 6 files changed, 23 insertions(+), 17 deletions(-)
Title: Protein Secondary Structure Prediction Using the Bamboo Method
Description: Implementation of the Bamboo methods described in Li, Dahl, Vannucci, Joo, and Tsai (2014) <DOI:10.1371/journal.pone.0109832>.
Author: David B. Dahl [aut, cre]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between bamboo versions 0.9.22 dated 2018-06-29 and 0.9.23 dated 2018-10-19
bamboo-0.9.22/bamboo/inst/java/scala-2.11/bamboo_2.11-0.9.22.jar |only bamboo-0.9.22/bamboo/inst/java/scala-2.12/bamboo_2.12-0.9.22.jar |only bamboo-0.9.22/bamboo/java/bamboo-sources.jar |only bamboo-0.9.23/bamboo/DESCRIPTION | 12 +++---- bamboo-0.9.23/bamboo/MD5 | 16 +++++----- bamboo-0.9.23/bamboo/NEWS | 10 +++++- bamboo-0.9.23/bamboo/R/bamboo.R | 11 +++--- bamboo-0.9.23/bamboo/R/onLoad.R | 6 ++- bamboo-0.9.23/bamboo/inst/java/scala-2.11/bamboo_2.11-0.9.23.jar |only bamboo-0.9.23/bamboo/inst/java/scala-2.12/bamboo_2.12-0.9.23.jar |only bamboo-0.9.23/bamboo/java/bamboo_2.12-0.9.23-sources.jar |only bamboo-0.9.23/bamboo/man/bamboo.Rd | 4 ++ 12 files changed, 35 insertions(+), 24 deletions(-)
Title: API for Mixpanel
Description: Provides an interface to many endpoints of Mixpanel's Data Export, Engage and JQL API. The R functions allow for event and profile data export as well as for segmentation, retention, funnel and addiction analysis. Results are always parsed into convenient R objects. Furthermore it is possible to load and update profiles.
Author: Meinhard Ploner [aut, cre, cph],
ProSiebenSat.1 Digital GmbH [cph],
BCG Digital Ventures GmbH [cph]
Maintainer: Meinhard Ploner <meinhard.ploner@gmail.com>
Diff between RMixpanel versions 0.6-3 dated 2018-01-10 and 0.7-0 dated 2018-10-19
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/mixpanelGetData.R | 5 +++-- R/mixpanelGetEvents.R | 3 ++- R/mixpanelGetEventsForProfiles.R | 3 ++- build/partial.rdb |binary man/mixpanelGetData.Rd | 3 ++- man/mixpanelGetEvents.Rd | 3 ++- man/mixpanelGetEventsForProfiles.Rd | 7 +++++-- 9 files changed, 28 insertions(+), 20 deletions(-)
Title: Datasets and Functions Featured in Pollock and Edwards, An R
Companion to Essentials of Political Analysis, Second Edition
Description: Bundles the datasets and functions used in the textbook by Philip
Pollock and Barry Edwards, An R Companion to Essentials of Political Analysis,
Second Edition.
Author: Barry Edwards and Philip Pollock
Maintainer: Barry Edwards <barry.edwards@ucf.edu>
Diff between poliscidata versions 2.2.2 dated 2018-09-10 and 2.2.3 dated 2018-10-19
DESCRIPTION | 6 +++--- MD5 | 10 ++++++---- NEWS.md | 8 ++++++++ R/plotmeansC.r | 35 +++++++++++++++++++++++++++-------- R/quickConsolePrint.r |only man/plotmeansC.Rd | 13 +++++++++++-- man/quickConsolePrint.Rd |only 7 files changed, 55 insertions(+), 17 deletions(-)
Title: Pattern Matching
Description: Implements type constructions and pattern matching.
Using this package, you can specify a type of object and write functions
that matches against the structure of objects of such types to program
data structure transformations more succinctly.
Author: Thomas Mailund [aut, cre]
Maintainer: Thomas Mailund <mailund@birc.au.dk>
Diff between pmatch versions 0.1.3 dated 2018-03-22 and 0.1.4 dated 2018-10-19
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Title: Fast R and C++ Access to NIfTI Images
Description: Provides very fast read and write access to images stored in the
NIfTI-1 and ANALYZE-7.5 formats, with seamless synchronisation between
compiled C and interpreted R code. Also provides a C/C++ API that can be
used by other packages. Not to be confused with 'RNiftyReg', which performs
image registration.
Author: Jon Clayden [cre, aut],
Bob Cox [aut],
Mark Jenkinson [aut],
Matt Hall [ctb],
Rick Reynolds [ctb],
Kate Fissell [ctb],
Jean-loup Gailly [cph],
Mark Adler [cph]
Maintainer: Jon Clayden <code@clayden.org>
Diff between RNifti versions 0.9.0 dated 2018-09-10 and 0.10.0 dated 2018-10-19
DESCRIPTION | 10 - MD5 | 22 +- NEWS | 32 +++ R/image.R | 24 +- R/nifti.R | 5 README.md | 2 inst/include/RNifti.h | 6 inst/include/RNiftiAPI.h | 13 + inst/include/lib/NiftiImage.h | 290 +++++++++++++++++++++------------ inst/include/lib/NiftiImage_internal.h | 21 -- src/main.cpp | 64 +++---- tests/testthat/test-05-nifti.R | 19 +- 12 files changed, 338 insertions(+), 170 deletions(-)
Title: A Wrapper Around 'WebTRIS' Traffic Flow API from Highways
England
Description: Provides functions to query data from the 'WebTRIS' Traffic Flow API (from Highways England) into tidy data frames.
The API documentation is available here: <http://webtris.highwaysengland.co.uk/api/swagger/ui/index>.
Author: Will Bowditch [aut, cre]
Maintainer: Will Bowditch <will.bowditch@dft.gov.uk>
Diff between webTRISr versions 0.1.0 dated 2017-08-25 and 0.1.1 dated 2018-10-19
DESCRIPTION | 12 ++--- MD5 | 28 ++++++------ NEWS.md | 4 + R/api_wrappers.R | 24 ++++++++-- R/corefuncs.R | 3 - R/report.R | 19 ++++---- R/report_parsers.R | 76 ++++++++++++++++++++++----------- R/report_tidy.R | 22 ++++++--- README.md | 6 ++ man/webtris_quality.Rd | 3 + man/webtris_report.Rd | 4 - tests/testthat/test_WTareas.R | 8 +-- tests/testthat/test_WTquality.R | 26 +++++++---- tests/testthat/test_WTsites.R | 6 +- tests/testthat/test_reports.R | 90 +++++++++++++++++----------------------- 15 files changed, 197 insertions(+), 134 deletions(-)
Title: Bootstrap Methods for Network Inference
Description: Functions for analysis of network objects, which are imported or simulated by the package. The non-parametric methods of analysis center on snowball and bootstrap sampling for estimating functions of network degree distribution. For other parameters of interest, see, e.g., 'bootnet' package.
Author: Leticia Ramirez-Ramirez [aut],
Kusha Nezafati [aut],
Yuzhou Chen [aut],
Vyacheslav Lyubchich [aut, cre],
Yulia R. Gel [aut]
Maintainer: Vyacheslav Lyubchich <lyubchich@umces.edu>
Diff between snowboot versions 0.5.2 dated 2016-12-08 and 1.0.0 dated 2018-10-19
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More information about linkprediction at CRAN
Permanent link
Title: Log-Multiplicative Models, Including Association Models
Description: Functions to fit log-multiplicative models using 'gnm', with
support for convenient printing, plots, and jackknife/bootstrap
standard errors. For complex survey data, models can be fitted from
design objects from the 'survey' package. Currently supported models
include UNIDIFF (Erikson & Goldthorpe), a.k.a. log-multiplicative
layer effect model (Xie), and several association models: Goodman's
row-column association models of the RC(M) and RC(M)-L families
with one or several dimensions; two skew-symmetric association
models proposed by Yamaguchi and by van der Heijden & Mooijaart.
Functions allow computing the intrinsic association coefficient
(and therefore the Altham index), including via the Bayes shrinkage
estimator proposed by Zhou; and the RAS/IPF/Deming-Stephan algorithm.
Author: Milan Bouchet-Valat [aut, cre],
Heather Turner [ctb],
Michael Friendly [ctb],
Jim Lemon [cph],
Gabor Csardi [cph]
Maintainer: Milan Bouchet-Valat <nalimilan@club.fr>
Diff between logmult versions 0.6.5 dated 2017-11-15 and 0.7.0 dated 2018-10-19
DESCRIPTION | 10 +- MD5 | 16 ++-- NEWS | 3 R/svygnm.R | 13 ++- build/vignette.rds |binary inst/doc/logmult.html | 192 ++++++++++++++++++++++++++++++++++++++++++++++++-- man/svygnm.Rd | 5 + tests/Wong2010-4.7.R | 7 + tests/supplementary.R | 6 + 9 files changed, 224 insertions(+), 28 deletions(-)
Title: Tools to Make Developing R Packages Easier
Description: Collection of package development tools.
Author: Hadley Wickham [aut],
Jim Hester [aut, cre],
Winston Chang [aut],
RStudio [cph],
R Core team [ctb] (Some namespace and vignette code extracted from base
R)
Maintainer: Jim Hester <james.hester@rstudio.com>
Diff between devtools versions 1.13.6 dated 2018-06-27 and 2.0.0 dated 2018-10-19
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|only devtools-2.0.0/devtools/tests/testthat/testTest/tests/testthat/test-dummy.R | 3 devtools-2.0.0/devtools/tests/testthat/testTestWithDepends/tests/testthat/test-dummy.R | 3 devtools-2.0.0/devtools/tests/testthat/testUseData/R/a.R |only devtools-2.0.0/devtools/tests/testthat/testVignetteExtras/vignettes/a.R |only devtools-2.0.0/devtools/tests/testthat/testVignettesBuilt/R/code.R |only devtools-2.0.0/devtools/vignettes/dependencies.Rmd | 15 356 files changed, 1498 insertions(+), 2147 deletions(-)
Title: An R-Shiny Application for Smith's Mean Measure of Divergence
(MMD)
Description: Offers a graphical user interface for the calculation of the mean measure of divergence, with facilities for trait selection and graphical representations.
Author: Frédéric Santos [aut, cre] (<https://orcid.org/0000-0003-1445-3871>)
Maintainer: Frédéric Santos <frederic.santos@u-bordeaux.fr>
Diff between AnthropMMD versions 2.5.0 dated 2018-03-21 and 2.5.1 dated 2018-10-19
DESCRIPTION | 13 +++++++------ MD5 | 8 ++++---- inst/AnthropMMDShinyApp/server.R | 16 ++++++++++++---- man/AnthropMMD-package.Rd | 14 ++++++++++---- man/StartMMD.Rd | 12 ++++++++++-- 5 files changed, 43 insertions(+), 20 deletions(-)
Title: Headers for the 'xtensor' Library
Description: The 'xtensor' C++ library for numerical analysis with
multi-dimensional array expressions is provided as a header-only
C++14 library. It offers an extensible expression system enabling
lazy broadcasting; an API following the idioms of the C++ standard
library; and tools to manipulate array expressions and build upon 'xtensor'.
Author: Johan Mabille, Sylvain Corlay and Wolf Vollprecht
Maintainer: Sylvain Corlay <sylvain.corlay@gmail.com>
Diff between xtensor versions 0.6.1-0 dated 2018-05-27 and 0.8.1-0 dated 2018-10-19
DESCRIPTION | 6 MD5 | 142 - inst/include/xtensor-r/rarray.hpp | 11 inst/include/xtensor-r/rcontainer.hpp | 2 inst/include/xtensor-r/rtensor.hpp | 6 inst/include/xtensor-r/xtensor_r_config.hpp | 2 inst/include/xtensor/xaccumulator.hpp | 67 inst/include/xtensor/xadapt.hpp | 112 + inst/include/xtensor/xarray.hpp | 38 inst/include/xtensor/xassign.hpp | 578 +++++- inst/include/xtensor/xbroadcast.hpp | 82 inst/include/xtensor/xbuffer_adaptor.hpp | 1 inst/include/xtensor/xbuilder.hpp | 20 inst/include/xtensor/xcomplex.hpp | 66 inst/include/xtensor/xcontainer.hpp | 672 ++----- inst/include/xtensor/xdynamic_view.hpp |only inst/include/xtensor/xeval.hpp | 12 inst/include/xtensor/xexception.hpp | 9 inst/include/xtensor/xexpression.hpp | 354 +++- inst/include/xtensor/xexpression_holder.hpp |only inst/include/xtensor/xfixed.hpp | 373 ++-- inst/include/xtensor/xfunction.hpp | 655 ++++--- inst/include/xtensor/xfunctor_view.hpp | 120 - inst/include/xtensor/xgenerator.hpp | 53 inst/include/xtensor/xhistogram.hpp |only inst/include/xtensor/xindex_view.hpp | 128 + inst/include/xtensor/xinfo.hpp | 1 inst/include/xtensor/xio.hpp | 380 ++++ inst/include/xtensor/xiterable.hpp | 758 ++++++-- inst/include/xtensor/xiterator.hpp | 114 + inst/include/xtensor/xjson.hpp | 10 inst/include/xtensor/xlayout.hpp | 16 inst/include/xtensor/xmanipulation.hpp |only inst/include/xtensor/xmasked_value.hpp |only inst/include/xtensor/xmasked_view.hpp |only inst/include/xtensor/xmath.hpp | 765 ++++++-- inst/include/xtensor/xnoalias.hpp | 161 + inst/include/xtensor/xnorm.hpp | 220 +- inst/include/xtensor/xnpy.hpp | 19 inst/include/xtensor/xoperation.hpp | 207 +- inst/include/xtensor/xoptional.hpp | 76 inst/include/xtensor/xoptional_assembly.hpp | 136 + inst/include/xtensor/xoptional_assembly_base.hpp | 382 +--- inst/include/xtensor/xoptional_assembly_storage.hpp |only inst/include/xtensor/xrandom.hpp | 154 + inst/include/xtensor/xreducer.hpp | 155 + inst/include/xtensor/xscalar.hpp | 127 - inst/include/xtensor/xsemantic.hpp | 123 + inst/include/xtensor/xshape.hpp | 228 ++ inst/include/xtensor/xslice.hpp | 928 +++++++++- inst/include/xtensor/xsort.hpp | 390 +++- inst/include/xtensor/xstorage.hpp | 399 ++++ inst/include/xtensor/xstrided_view.hpp | 1544 +++--------------- inst/include/xtensor/xstrided_view_base.hpp |only inst/include/xtensor/xstrides.hpp | 256 ++ inst/include/xtensor/xtensor.hpp | 55 inst/include/xtensor/xtensor_config.hpp | 25 inst/include/xtensor/xtensor_forward.hpp | 6 inst/include/xtensor/xtensor_simd.hpp | 38 inst/include/xtensor/xutils.hpp | 240 ++ inst/include/xtensor/xvectorize.hpp | 2 inst/include/xtensor/xview.hpp | 994 ++++++++++- inst/include/xtl/xbasic_fixed_string.hpp | 14 inst/include/xtl/xclosure.hpp | 4 inst/include/xtl/xcomplex.hpp | 1170 +++++++++++++ inst/include/xtl/xcomplex_sequence.hpp |only inst/include/xtl/xmeta_utils.hpp | 30 inst/include/xtl/xoptional.hpp | 20 inst/include/xtl/xsequence.hpp | 7 inst/include/xtl/xtl_config.hpp | 2 inst/lib/cmake/xtensor-r/xtensor-rConfigVersion.cmake | 2 inst/lib/cmake/xtensor/xtensorConfig.cmake | 3 inst/lib/cmake/xtensor/xtensorConfigVersion.cmake | 2 inst/lib/cmake/xtl/xtlConfigVersion.cmake | 2 inst/lib/cmake/xtl/xtlTargets.cmake | 1 inst/lib/pkgconfig/xtensor.pc | 2 inst/lib/pkgconfig/xtl.pc |only 77 files changed, 9556 insertions(+), 4121 deletions(-)
Title: Stubbing and Setting Expectations on 'HTTP' Requests
Description: Stubbing and setting expectations on 'HTTP' requests.
Includes tools for stubbing 'HTTP' requests, including expected
request conditions and response conditions. Match on
'HTTP' method, query parameters, request body, headers and
more. Can be used for unit tests or outside of a testing
context.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
rOpenSci [fnd] (https://ropensci.org)
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>
Diff between webmockr versions 0.2.6 dated 2018-05-17 and 0.2.8 dated 2018-10-19
DESCRIPTION | 13 ++-- MD5 | 47 ++++++++------- NAMESPACE | 4 + NEWS.md | 9 ++ R/HttpLibAdapterRegistry.R | 4 - R/adapter-httr.R |only R/flipswitch.R | 6 - R/onload.R | 1 R/webmockr-opts.R | 3 R/webmockr.R | 14 ++-- R/zzz.R | 7 ++ README.md | 81 ++++++++++++++++++++++++-- man/CrulAdapter.Rd | 4 + man/HashCounter.Rd | 1 man/HttrAdapter.Rd |only man/RequestRegistry.Rd | 1 man/StubRegistry.Rd | 1 man/build_httr_request.Rd |only man/build_httr_response.Rd |only man/httr_mock.Rd |only man/remove_request_stub.Rd | 1 man/request_registry.Rd | 1 man/stub_registry.Rd | 1 man/stub_registry_clear.Rd | 1 man/webmockr-package.Rd | 5 - tests/testthat/test-HttpLibAdapaterRegistry.R | 14 ++++ tests/testthat/test-flipswitch.R | 7 +- 27 files changed, 178 insertions(+), 48 deletions(-)
Title: Survival Analysis in Health Economic Evaluation
Description: Contains a suite of functions for survival analysis in health economics. These can be used to run survival models under a frequentist (based on maximum likelihood) or a Bayesian approach (both based on Integrated Nested Laplace Approximation or Hamiltonian Monte Carlo). The user can specify a set of parametric models using a common notation and select the preferred mode of inference. The results can also be post-processed to produce probabilistic sensitivity analysis and can be used to export the output to an Excel file (e.g. for a Markov model, as often done by modellers and practitioners).
Author: Gianluca Baio [aut, cre]
Maintainer: Gianluca Baio <gianluca@stats.ucl.ac.uk>
Diff between survHE versions 1.0.6 dated 2017-07-08 and 1.0.64 dated 2018-10-19
survHE-1.0.6/survHE/README.md |only survHE-1.0.6/survHE/exec |only survHE-1.0.6/survHE/inst/chunks |only survHE-1.0.6/survHE/src/include |only survHE-1.0.6/survHE/tools/make_cpp.R |only survHE-1.0.64/survHE/DESCRIPTION | 37 +- survHE-1.0.64/survHE/MD5 | 107 +++--- survHE-1.0.64/survHE/NAMESPACE | 9 survHE-1.0.64/survHE/R/digitise.R | 21 + survHE-1.0.64/survHE/R/make.ipd.R | 23 + survHE-1.0.64/survHE/R/make.surv.R | 88 +++++ survHE-1.0.64/survHE/R/make.transition.probs.R | 26 + survHE-1.0.64/survHE/R/model.fit.plot.R | 66 +++- survHE-1.0.64/survHE/R/plot.survHE.R | 40 ++ survHE-1.0.64/survHE/R/poly.weibull.R | 52 +++ survHE-1.0.64/survHE/R/print.survHE.R | 72 +++- survHE-1.0.64/survHE/R/psa.plot.R | 62 +++ survHE-1.0.64/survHE/R/stanmodels.R | 21 - survHE-1.0.64/survHE/R/summary.survHE.R | 33 ++ survHE-1.0.64/survHE/R/survHE-package.R |only survHE-1.0.64/survHE/R/survHE.R | 124 +++++++ survHE-1.0.64/survHE/R/test.linear.assumptions.R | 13 survHE-1.0.64/survHE/R/write.surv.R | 23 + survHE-1.0.64/survHE/R/zzz.R | 2 survHE-1.0.64/survHE/cleanup | 2 survHE-1.0.64/survHE/cleanup.win | 2 survHE-1.0.64/survHE/inst/doc/survHE.pdf |binary survHE-1.0.64/survHE/inst/include |only survHE-1.0.64/survHE/man/digitise.Rd | 54 +-- survHE-1.0.64/survHE/man/fit.models.Rd | 201 ++++++------ survHE-1.0.64/survHE/man/internal_stan.Rd | 8 survHE-1.0.64/survHE/man/make.ipd.Rd | 55 +-- survHE-1.0.64/survHE/man/make.surv.Rd | 96 +++--- survHE-1.0.64/survHE/man/make.transition.probs.Rd | 57 +-- survHE-1.0.64/survHE/man/model.fit.plot.Rd | 52 +-- survHE-1.0.64/survHE/man/plot.survHE.Rd | 76 ++-- survHE-1.0.64/survHE/man/poly.weibull.Rd | 133 ++++---- survHE-1.0.64/survHE/man/print.survHE.Rd | 65 +--- survHE-1.0.64/survHE/man/psa.plot.Rd | 44 +- survHE-1.0.64/survHE/man/summary.survHE.Rd | 84 ++--- survHE-1.0.64/survHE/man/survHE-package.Rd | 42 +- survHE-1.0.64/survHE/man/test.linear.assumptions.Rd | 35 -- survHE-1.0.64/survHE/man/write.surv.Rd | 55 +-- survHE-1.0.64/survHE/src/Makevars | 18 + survHE-1.0.64/survHE/src/Makevars.win |only survHE-1.0.64/survHE/src/Modules.cpp | 319 -------------------- survHE-1.0.64/survHE/src/stan_files |only survHE-1.0.64/survHE/tools/make_cc.R |only 48 files changed, 1217 insertions(+), 1000 deletions(-)
Title: Interface to Geometry Engine - Open Source ('GEOS')
Description: Interface to Geometry Engine - Open Source ('GEOS') using the C 'API' for topology operations on geometries. The 'GEOS' library is external to the package, and, when installing the package from source, must be correctly installed first. Windows and Mac Intel OS X binaries are provided on 'CRAN'.
Author: Roger Bivand [cre, aut] (<https://orcid.org/0000-0003-2392-6140>),
Colin Rundel [aut],
Edzer Pebesma [ctb],
Rainer Stuetz [ctb],
Karl Ove Hufthammer [ctb],
Patrick Giraudoux [ctb],
Martin Davis [cph, ctb],
Sandro Santilli [cph, ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgeos versions 0.3-28 dated 2018-06-08 and 0.4-1 dated 2018-10-19
ChangeLog | 24 ++++++++++++ DESCRIPTION | 8 ++-- MD5 | 32 ++++++++-------- R/AAA.R | 15 ++++++- configure | 22 +++++------ configure.ac | 4 +- inst/ChangeLog | 24 ++++++++++++ inst/SVN_VERSION | 2 - man/utility-functions.Rd | 3 + src/init.c | 2 - src/rgeos.c | 75 ++++++++++++++++++++++++++++++++++---- src/rgeos.h | 5 ++ src/rgeos_R2geos.c | 42 +++++++++++++++++++-- src/rgeos_coord.c | 4 +- src/rgeos_topology.c | 8 +++- src/rgeos_topology_binary.c | 10 +++-- tests/leak_by_exception.R |only tests/leak_by_exception.Rout.save |only 18 files changed, 226 insertions(+), 54 deletions(-)
Title: Some Additional Multiple Imputation Functions, Especially for
'mice'
Description: Contains functions for multiple imputation which
complements existing functionality in R.
In particular, several imputation methods for the
mice package (van Buuren & Groothuis-Oudshoorn, 2011,
<doi:10.18637/jss.v045.i03>) are included.
Main features of the miceadds package include
plausible value imputation (Mislevy, 1991,
<doi:10.1007/BF02294457>), multilevel imputation for
variables at any level or with any number of hierarchical
and non-hierarchical levels (Grund, Luedtke & Robitzsch,
2018, <doi:10.1177/1094428117703686>; van Buuren, 2018,
Ch.7, <doi:10.1201/9780429492259>), imputation using
partial least squares (PLS) for high dimensional
predictors (Robitzsch, Pham & Yanagida, 2016),
and nested multiple imputation (Rubin, 2003,
<doi:10.1111/1467-9574.00217>).
Author: Alexander Robitzsch [aut, cre], Simon Grund [aut],
Thorsten Henke [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between miceadds versions 2.14-26 dated 2018-09-18 and 2.15-22 dated 2018-10-19
miceadds-2.14-26/miceadds/R/ma.wtd.curtosisNA.R |only miceadds-2.14-26/miceadds/R/miceadds_create_contextual_variables.R |only miceadds-2.14-26/miceadds/R/miceadds_norm_draw.R |only miceadds-2.15-22/miceadds/DESCRIPTION | 36 +- miceadds-2.15-22/miceadds/MD5 | 162 +++++----- miceadds-2.15-22/miceadds/NAMESPACE | 7 miceadds-2.15-22/miceadds/R/MIcombine.NestedImputationResultList.R | 60 +-- miceadds-2.15-22/miceadds/R/NestedImputationList.R | 40 +- miceadds-2.15-22/miceadds/R/RcppExports.R | 2 miceadds-2.15-22/miceadds/R/Rhat.mice.R | 17 - miceadds-2.15-22/miceadds/R/Rhat1.R | 25 - miceadds-2.15-22/miceadds/R/fleishman_coef.R |only miceadds-2.15-22/miceadds/R/fleishman_sim.R |only miceadds-2.15-22/miceadds/R/kernelpls.fit2.R | 13 miceadds-2.15-22/miceadds/R/ma.wtd.kurtosisNA.R |only miceadds-2.15-22/miceadds/R/mice.impute.2l.contextual.norm.R | 4 miceadds-2.15-22/miceadds/R/mice.impute.2l.contextual.pmm.R | 4 miceadds-2.15-22/miceadds/R/mice.impute.2l.pls2.R | 4 miceadds-2.15-22/miceadds/R/mice.impute.bygroup.R | 6 miceadds-2.15-22/miceadds/R/mice.impute.ml.lmer.R | 9 miceadds-2.15-22/miceadds/R/mice.impute.norm3.R | 4 miceadds-2.15-22/miceadds/R/mice.impute.pmm3.R | 4 miceadds-2.15-22/miceadds/R/mice.impute.pmm4.R | 4 miceadds-2.15-22/miceadds/R/mice.impute.pmm5.R | 4 miceadds-2.15-22/miceadds/R/mice.impute.tricube.pmm.R | 14 miceadds-2.15-22/miceadds/R/mice.impute.tricube.pmm2.R | 4 miceadds-2.15-22/miceadds/R/mice_imputation_create_contextual_variables.R |only miceadds-2.15-22/miceadds/R/mice_imputation_extract_list_arguments.R | 2 miceadds-2.15-22/miceadds/R/mice_imputation_norm_draw.R |only miceadds-2.15-22/miceadds/R/mice_imputation_pls_estimate_pls_regression.R | 8 miceadds-2.15-22/miceadds/R/mice_imputation_pls_helper.R | 17 - miceadds-2.15-22/miceadds/R/mice_imputation_pls_include_interactions.R | 16 miceadds-2.15-22/miceadds/R/mice_imputation_pls_include_quadratics.R | 2 miceadds-2.15-22/miceadds/R/mice_impute_bygroup_modify_arguments.R | 4 miceadds-2.15-22/miceadds/R/mice_ml_lmer_extract_input.R | 8 miceadds-2.15-22/miceadds/R/mice_ml_lmer_include_cluster_means.R | 5 miceadds-2.15-22/miceadds/R/mice_multilevel_imputation_pmm5.R | 2 miceadds-2.15-22/miceadds/R/micombine.cor.R | 100 ++---- miceadds-2.15-22/miceadds/R/micombine.cov.R | 70 ++-- miceadds-2.15-22/miceadds/R/mids2mlwin.R | 51 +-- miceadds-2.15-22/miceadds/R/nested.datlist_create.R | 33 +- miceadds-2.15-22/miceadds/R/nesteddatlist2datlist.R | 11 miceadds-2.15-22/miceadds/R/nnig_coef.R |only miceadds-2.15-22/miceadds/R/nnig_sim.R |only miceadds-2.15-22/miceadds/R/pool.mi.R | 32 - miceadds-2.15-22/miceadds/R/read.fwf2.R | 16 miceadds-2.15-22/miceadds/R/sub.micombine.cor.R | 104 +++--- miceadds-2.15-22/miceadds/R/sub.micombine.cov.R | 97 ++--- miceadds-2.15-22/miceadds/R/summary.mipo.nmi.R | 6 miceadds-2.15-22/miceadds/R/with.NestedImputationList.R | 56 +-- miceadds-2.15-22/miceadds/R/with.datlist.R | 36 +- miceadds-2.15-22/miceadds/R/with.mids.1chain.R | 12 miceadds-2.15-22/miceadds/R/with.mids.nmi.R | 20 - miceadds-2.15-22/miceadds/R/with.nested.datlist.R | 51 +-- miceadds-2.15-22/miceadds/README.md | 2 miceadds-2.15-22/miceadds/data/data.allison.gssexp.rda |binary miceadds-2.15-22/miceadds/data/data.allison.hip.rda |binary miceadds-2.15-22/miceadds/data/data.allison.usnews.rda |binary miceadds-2.15-22/miceadds/data/data.enders.depression.rda |binary miceadds-2.15-22/miceadds/data/data.enders.eatingattitudes.rda |binary miceadds-2.15-22/miceadds/data/data.enders.employee.rda |binary miceadds-2.15-22/miceadds/data/data.graham.ex3.rda |binary miceadds-2.15-22/miceadds/data/data.graham.ex6.rda |binary miceadds-2.15-22/miceadds/data/data.graham.ex8a.rda |binary miceadds-2.15-22/miceadds/data/data.graham.ex8b.rda |binary miceadds-2.15-22/miceadds/data/data.graham.ex8c.rda |binary miceadds-2.15-22/miceadds/data/data.internet.rda |binary miceadds-2.15-22/miceadds/data/data.largescale.rda |binary miceadds-2.15-22/miceadds/data/data.ma01.rda |binary miceadds-2.15-22/miceadds/data/data.ma02.rda |binary miceadds-2.15-22/miceadds/data/data.ma03.rda |binary miceadds-2.15-22/miceadds/data/data.ma04.rda |binary miceadds-2.15-22/miceadds/data/data.ma05.rda |binary miceadds-2.15-22/miceadds/data/data.ma06.rda |binary miceadds-2.15-22/miceadds/data/data.ma07.rda |binary miceadds-2.15-22/miceadds/data/data.ma08.rda |binary miceadds-2.15-22/miceadds/data/data.smallscale.rda |binary miceadds-2.15-22/miceadds/inst/NEWS | 18 + miceadds-2.15-22/miceadds/man/Reval.Rd | 6 miceadds-2.15-22/miceadds/man/fleishman_sim.Rd |only miceadds-2.15-22/miceadds/man/ma.wtd.statNA.Rd | 23 - miceadds-2.15-22/miceadds/man/mice.impute.ml.lmer.Rd | 7 miceadds-2.15-22/miceadds/man/mice.impute.tricube.pmm.Rd | 4 miceadds-2.15-22/miceadds/man/miceadds-package.Rd | 57 ++- miceadds-2.15-22/miceadds/man/nnig_sim.Rd |only miceadds-2.15-22/miceadds/src/Makevars | 2 miceadds-2.15-22/miceadds/src/Makevars.win | 2 miceadds-2.15-22/miceadds/src/RcppExports.cpp | 2 88 files changed, 666 insertions(+), 639 deletions(-)
Title: GeoJSON to Simple Feature Converter
Description: Converts Between GeoJSON and simple feature objects.
Author: David Cooley [aut, cre]
Maintainer: David Cooley <dcooley@symbolix.com.au>
Diff between geojsonsf versions 1.1 dated 2018-06-29 and 1.2 dated 2018-10-19
geojsonsf-1.1/geojsonsf/R/scratch.R |only geojsonsf-1.1/geojsonsf/inst/include/sf_geojson.h |only geojsonsf-1.1/geojsonsf/tests/testthat/test-geometry_objects.R |only geojsonsf-1.2/geojsonsf/DESCRIPTION | 14 geojsonsf-1.2/geojsonsf/MD5 | 79 - geojsonsf-1.2/geojsonsf/NAMESPACE | 5 geojsonsf-1.2/geojsonsf/NEWS.md | 13 geojsonsf-1.2/geojsonsf/R/RcppExports.R | 8 geojsonsf-1.2/geojsonsf/R/geojson_sf.R | 51 geojsonsf-1.2/geojsonsf/R/geojsonsf-package.R | 5 geojsonsf-1.2/geojsonsf/README.md | 360 ++---- geojsonsf-1.2/geojsonsf/data/geo_melbourne.rda |binary geojsonsf-1.2/geojsonsf/inst/doc/geojson-sf-conversions.html | 110 - geojsonsf-1.2/geojsonsf/inst/include/geojson_properties.h | 6 geojsonsf-1.2/geojsonsf/inst/include/geojson_sfc.h | 21 geojsonsf-1.2/geojsonsf/inst/include/geojson_sfg.h | 43 geojsonsf-1.2/geojsonsf/inst/include/geojson_to_sf.h | 84 - geojsonsf-1.2/geojsonsf/inst/include/geojson_wkt.h | 12 geojsonsf-1.2/geojsonsf/inst/include/geojsonsf.h | 4 geojsonsf-1.2/geojsonsf/inst/include/geometrycollection |only geojsonsf-1.2/geojsonsf/inst/include/utils |only geojsonsf-1.2/geojsonsf/inst/include/writers |only geojsonsf-1.2/geojsonsf/man/figures/README-unnamed-chunk-12-1.png |only geojsonsf-1.2/geojsonsf/man/geo_melbourne.Rd | 2 geojsonsf-1.2/geojsonsf/man/geojson_sfc.Rd | 8 geojsonsf-1.2/geojsonsf/man/sf_geojson.Rd | 17 geojsonsf-1.2/geojsonsf/src/RcppExports.cpp | 27 geojsonsf-1.2/geojsonsf/src/geojson_properties.cpp | 31 geojsonsf-1.2/geojsonsf/src/geojson_sfc.cpp | 40 geojsonsf-1.2/geojsonsf/src/geojson_sfg.cpp | 310 +++-- geojsonsf-1.2/geojsonsf/src/geojson_to_sf.cpp | 187 +-- geojsonsf-1.2/geojsonsf/src/geojson_to_wkt.cpp | 71 - geojsonsf-1.2/geojsonsf/src/geojson_validate.cpp | 2 geojsonsf-1.2/geojsonsf/src/sf_geojson.cpp | 587 +++------- geojsonsf-1.2/geojsonsf/tests/testthat/test-ZM.R |only geojsonsf-1.2/geojsonsf/tests/testthat/test-data_types.R |only geojsonsf-1.2/geojsonsf/tests/testthat/test-errors.R | 10 geojsonsf-1.2/geojsonsf/tests/testthat/test-geojson_properties.R | 45 geojsonsf-1.2/geojsonsf/tests/testthat/test-geojson_sf.R |only geojsonsf-1.2/geojsonsf/tests/testthat/test-geojson_sf_simplify.R |only geojsonsf-1.2/geojsonsf/tests/testthat/test-geojson_validate.R | 13 geojsonsf-1.2/geojsonsf/tests/testthat/test-geojson_wkt.R | 13 geojsonsf-1.2/geojsonsf/tests/testthat/test-geometries.R | 7 geojsonsf-1.2/geojsonsf/tests/testthat/test-null_geometries.R | 111 + geojsonsf-1.2/geojsonsf/tests/testthat/test-print.R |only geojsonsf-1.2/geojsonsf/tests/testthat/test-sf_attributes.R |only geojsonsf-1.2/geojsonsf/tests/testthat/test-sf_geojson.R | 198 ++- 47 files changed, 1281 insertions(+), 1213 deletions(-)
Title: Get Images Out of DICOM Format Quickly
Description: Provides tools to sort DICOM-format medical image files, and
convert them to NIfTI-1 format.
Author: Jon Clayden [aut, cre],
Chris Rorden [aut],
Martin J Fiedler [cph],
Cong Xu [cph],
Pascal Gloor [cph]
Maintainer: Jon Clayden <code@clayden.org>
Diff between divest versions 0.6.1 dated 2018-09-16 and 0.7.0 dated 2018-10-19
DESCRIPTION | 8 MD5 | 36 NEWS | 13 R/read.R | 23 man/readDicom.Rd | 6 src/ImageList.h | 2 src/dcm2niix/jpg_0XC3.cpp | 6 src/dcm2niix/jpg_0XC3.h | 4 src/dcm2niix/nifti1_io_core.cpp | 6 src/dcm2niix/nifti1_io_core.h | 7 src/dcm2niix/nii_dicom.cpp | 1909 ++++++++++++++++++++++++++++----------- src/dcm2niix/nii_dicom.h | 69 - src/dcm2niix/nii_dicom_batch.cpp | 1108 ++++++++++++++++++---- src/dcm2niix/nii_dicom_batch.h | 8 src/dcm2niix/nii_foreign.cpp | 2 src/dcm2niix/nii_ortho.cpp | 6 src/dcm2niix/print.h | 6 src/ujpeg/ujpeg.cpp | 6 tests/testthat/test-05-read.R | 14 19 files changed, 2462 insertions(+), 777 deletions(-)
Title: Supporting Graphs for Analysing Time Series
Description: Provides 'ggplot2' graphics for analysing time
series data. It aims to fit into the 'tidyverse' and grammar of
graphics framework for handling temporal data.
Author: Earo Wang [aut, cre] (<https://orcid.org/0000-0001-6448-5260>),
Di Cook [aut, ths] (<https://orcid.org/0000-0002-3813-7155>),
Rob Hyndman [aut, ths] (<https://orcid.org/0000-0002-2140-5352>)
Maintainer: Earo Wang <earo.wang@gmail.com>
Diff between sugrrants versions 0.1.5 dated 2018-08-19 and 0.1.6 dated 2018-10-19
DESCRIPTION | 40 ++++++++----- MD5 | 34 +++++------ NAMESPACE | 3 - NEWS.md | 5 + R/calendar-fun.R | 13 +--- R/compat-purrr.R | 5 + R/frame-calendar.R | 119 ++++++++++++++++++++++++----------------- R/prettify.R | 37 +++++++----- R/stat-acf.R | 2 R/sugrrants-pkg.R | 1 README.md | 10 +-- inst/doc/frame-calendar.R | 22 +++---- inst/doc/frame-calendar.Rmd | 24 ++++---- inst/doc/frame-calendar.html | 64 ++++++++++------------ man/figure/calendar-plot-1.png |binary man/frame-calendar.Rd | 17 ++--- tests/testthat/test-calendar.R | 10 +-- vignettes/frame-calendar.Rmd | 24 ++++---- 18 files changed, 228 insertions(+), 202 deletions(-)
Title: Estimating Through the Maximum Product Spacing Approach
Description: Developed for computing the probability density function, computing the cumulative distribution function, computing the quantile function, random generation, and estimating the parameters of 24 G-family of statistical distributions via the maximum product spacing approach introduced in <https://www.jstor.org/stable/2345411>. The set of families contains: beta G distribution, beta exponential G distribution, beta extended G distribution, exponentiated G distribution, exponentiated exponential Poisson G distribution, exponentiated generalized G distribution, exponentiated Kumaraswamy G distribution, gamma type I G distribution, gamma type II G distribution, gamma uniform G distribution, gamma-X generated of log-logistic family of G distribution, gamma-X family of modified beta exponential G distribution, geometric exponential Poisson G distribution, generalized beta G distribution, generalized transmuted G distribution, Kumaraswamy G distribution, log gamma type I G distribution, log gamma type II G distribution, Marshall Olkin G distribution, Marshall Olkin Kumaraswamy G distribution, modified beta G distribution, odd log-logistic G distribution, truncated-exponential skew-symmetric G distribution, and Weibull G distribution.
Author: Mahdi Teimouri
Maintainer: Mahdi Teimouri <teimouri@aut.ac.ir>
Diff between MPS versions 2.2.0 dated 2018-09-03 and 2.3.0 dated 2018-10-19
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- R/MPS.R | 48 ++++++++++++++++++++++++------------------------ man/MPS-package.Rd | 46 ++++++++++++++++++++++++++++++++++++++++++++++ man/expkumg.Rd | 2 +- man/gmbetaexpg.Rd | 2 +- man/gxlogisticg.Rd | 8 ++++---- man/mbetag.Rd | 2 +- man/weibullg.Rd | 2 +- 9 files changed, 89 insertions(+), 43 deletions(-)
Title: Estimate Size at Sexual Maturity
Description: Contains functions to estimate morphometric and gonadal size at sexual maturity for organisms, usually fish and invertebrates. It includes methods for classification based on relative growth (using principal components analysis, hierarchical clustering, discriminant analysis), logistic regression (Frequentist or Bayes), parameters estimation and some basic plots.
Author: Josymar Torrejon-Magallanes [cre, aut]
Maintainer: Josymar Torrejon-Magallanes <ejosymart@gmail.com>
Diff between sizeMat versions 0.3.0 dated 2017-04-03 and 1.0.0 dated 2018-10-19
DESCRIPTION | 10 ++-- MD5 | 46 ++++++++++----------- R/gonadMat-internal.R | 2 R/gonadMat-main.R | 92 +++++++++++++++++++++++++----------------- R/morphMat-internal.R | 2 R/morphMat-main.R | 105 +++++++++++++++++++++++++++++-------------------- build/vignette.rds |binary inst/doc/sizeMat.R | 12 ++++- inst/doc/sizeMat.Rmd | 22 ++++++++-- inst/doc/sizeMat.html | 70 ++++++++++++++++++++++---------- man/Crab-data.Rd | 1 man/Fish-maturity.Rd | 1 man/classify_mature.Rd | 1 man/gonad_mature.Rd | 6 +- man/morph_mature.Rd | 1 man/nagelkerkeR2.Rd | 1 man/plot.classify.Rd | 9 ++-- man/plot.gonadMat.Rd | 5 +- man/plot.morphMat.Rd | 5 +- man/print.classify.Rd | 1 man/print.gonadMat.Rd | 1 man/print.morphMat.Rd | 1 man/sizeMat-package.Rd | 9 +--- vignettes/sizeMat.Rmd | 22 ++++++++-- 24 files changed, 262 insertions(+), 163 deletions(-)
Title: Extending 'dendrogram' Functionality in R
Description: Offers a set of functions for extending
'dendrogram' objects in R, letting you visualize and compare trees of
'hierarchical clusterings'. You can (1) Adjust a tree's graphical parameters
- the color, size, type, etc of its branches, nodes and labels. (2)
Visually and statistically compare different 'dendrograms' to one another.
Author: Tal Galili [aut, cre, cph] (https://www.r-statistics.com),
Gavin Simpson [ctb],
Gregory Jefferis [aut, ctb] (imported code from his dendroextras
package),
Marco Gallotta [ctb] (a.k.a: marcog),
Johan Renaudie [ctb] (https://github.com/plannapus),
The R Core Team [ctb] (Thanks for the Infastructure, and code in the
examples),
Kurt Hornik [ctb],
Uwe Ligges [ctb],
Andrej-Nikolai Spiess [ctb],
Steve Horvath [ctb],
Peter Langfelder [ctb],
skullkey [ctb],
Mark Van Der Loo [ctb] (https://github.com/markvanderloo d3dendrogram),
Andrie de Vries [ctb] (ggdendro author),
Zuguang Gu [ctb] (circlize author),
Cath [ctb] (https://github.com/CathG),
John Ma [ctb] (https://github.com/JohnMCMa),
Krzysiek G [ctb] (https://github.com/storaged),
Manuela Hummel [ctb] (https://github.com/hummelma),
Chase Clark [ctb] (https://github.com/chasemc),
Lucas Graybuck [ctb] (https://github.com/hypercompetent),
jdetribol [ctb] (https://github.com/jdetribol),
Yoav Benjamini [ths]
Maintainer: Tal Galili <tal.galili@gmail.com>
Diff between dendextend versions 1.8.0 dated 2018-05-06 and 1.9.0 dated 2018-10-19
dendextend-1.8.0/dendextend/man/dendextend_labels.dendrogram.Rd |only dendextend-1.9.0/dendextend/DESCRIPTION | 15 dendextend-1.9.0/dendextend/MD5 | 50 - dendextend-1.9.0/dendextend/NAMESPACE | 10 dendextend-1.9.0/dendextend/NEWS | 17 dendextend-1.9.0/dendextend/R/ape.R | 15 dendextend-1.9.0/dendextend/R/attr_access.R | 23 dendextend-1.9.0/dendextend/R/cut_lower_fun.R | 12 dendextend-1.9.0/dendextend/R/cutree.dendrogram.R | 9 dendextend-1.9.0/dendextend/R/dendextend_options.R | 8 dendextend-1.9.0/dendextend/R/distinct_edges.R | 4 dendextend-1.9.0/dendextend/R/highlight_branches.R | 4 dendextend-1.9.0/dendextend/R/prune.R | 57 + dendextend-1.9.0/dendextend/R/set.dendrogram.R | 6 dendextend-1.9.0/dendextend/R/stats_imports.R | 29 dendextend-1.9.0/dendextend/inst/doc/Cluster_Analysis.html | 4 dendextend-1.9.0/dendextend/inst/doc/FAQ.html | 4 dendextend-1.9.0/dendextend/inst/doc/Quick_Introduction.html | 4 dendextend-1.9.0/dendextend/inst/doc/introduction.html | 50 - dendextend-1.9.0/dendextend/man/as.phylo.dendrogram.Rd | 5 dendextend-1.9.0/dendextend/man/get_branches_heights.Rd | 12 dendextend-1.9.0/dendextend/man/set.Rd | 6 dendextend-1.9.0/dendextend/tests/testthat/test-attr_access.R | 4 dendextend-1.9.0/dendextend/tests/testthat/test-cut_lower_fun.R | 40 - dendextend-1.9.0/dendextend/tests/testthat/test-cutree.dendrogram.R | 6 dendextend-1.9.0/dendextend/tests/testthat/test-highlight_branches.R |only dendextend-1.9.0/dendextend/tests/testthat/test-trim.R | 292 +++++++--- 27 files changed, 375 insertions(+), 311 deletions(-)
Title: AMCE Estimator for Conjoint Experiments
Description: An R implementation of the Average Marginal Component-specific
Effects (AMCE) estimator presented in Hainmueller, J., Hopkins, D., and Yamamoto
T. (2014) <DOI:10.1093/pan/mpt024> Causal Inference in Conjoint Analysis: Understanding Multi-Dimensional
Choices via Stated Preference Experiments. Political Analysis 22(1):1-30.
Author: Soubhik Barari, Elissa Berwick, Jens Hainmueller, Daniel Hopkins, Sean Liu, Anton Strezhnev, Teppei Yamamoto
Maintainer: Anton Strezhnev <astrezhn@law.upenn.edu>
Diff between cjoint versions 2.0.6 dated 2017-11-09 and 2.1.0 dated 2018-10-19
cjoint-2.0.6/cjoint/man/conjoint_data.Rd |only cjoint-2.1.0/cjoint/DESCRIPTION | 19 +- cjoint-2.1.0/cjoint/MD5 | 27 ++- cjoint-2.1.0/cjoint/NAMESPACE | 12 + cjoint-2.1.0/cjoint/R/cjoint.R | 165 ++++++++++++++--------- cjoint-2.1.0/cjoint/R/test_data |only cjoint-2.1.0/cjoint/R/view_amce.R |only cjoint-2.1.0/cjoint/data/immigrationconjoint.rda |binary cjoint-2.1.0/cjoint/data/immigrationdesign.rda |binary cjoint-2.1.0/cjoint/data/japan2014conjoint.rda |only cjoint-2.1.0/cjoint/man/amce.Rd | 3 cjoint-2.1.0/cjoint/man/immigrationconjoint.Rd | 4 cjoint-2.1.0/cjoint/man/immigrationdesign.Rd | 2 cjoint-2.1.0/cjoint/man/japan2014conjoint.Rd |only cjoint-2.1.0/cjoint/man/plot.amce.Rd | 8 - cjoint-2.1.0/cjoint/man/read.qualtrics.Rd | 4 cjoint-2.1.0/cjoint/man/view.Rd |only 17 files changed, 153 insertions(+), 91 deletions(-)
Title: Data Explorer
Description: Data exploration process for data analysis and model building, so
that users could focus on understanding data and extracting insights. The
package automatically scans through each variable and does data profiling.
Typical graphical techniques will be performed for both discrete and
continuous features.
Author: Boxuan Cui [aut, cre]
Maintainer: Boxuan Cui <boxuancui@gmail.com>
Diff between DataExplorer versions 0.6.0 dated 2018-05-30 and 0.7.0 dated 2018-10-19
DataExplorer-0.6.0/DataExplorer/R/helper.r |only DataExplorer-0.6.0/DataExplorer/tests/testthat/test-helper.r |only DataExplorer-0.7.0/DataExplorer/DESCRIPTION | 17 DataExplorer-0.7.0/DataExplorer/MD5 | 124 DataExplorer-0.7.0/DataExplorer/NAMESPACE | 25 DataExplorer-0.7.0/DataExplorer/NEWS.md | 36 DataExplorer-0.7.0/DataExplorer/R/create_report.r | 100 DataExplorer-0.7.0/DataExplorer/R/drop_columns.r | 8 DataExplorer-0.7.0/DataExplorer/R/dummify.r | 139 DataExplorer-0.7.0/DataExplorer/R/group_category.r | 8 DataExplorer-0.7.0/DataExplorer/R/internal.r |only DataExplorer-0.7.0/DataExplorer/R/introduce.r | 39 DataExplorer-0.7.0/DataExplorer/R/plot.r |only DataExplorer-0.7.0/DataExplorer/R/plot_bar.r | 147 DataExplorer-0.7.0/DataExplorer/R/plot_boxplot.r | 114 DataExplorer-0.7.0/DataExplorer/R/plot_correlation.r | 53 DataExplorer-0.7.0/DataExplorer/R/plot_density.r | 104 DataExplorer-0.7.0/DataExplorer/R/plot_histogram.r | 105 DataExplorer-0.7.0/DataExplorer/R/plot_intro.r |only DataExplorer-0.7.0/DataExplorer/R/plot_missing.r | 86 DataExplorer-0.7.0/DataExplorer/R/plot_prcomp.r | 137 DataExplorer-0.7.0/DataExplorer/R/plot_qq.r |only DataExplorer-0.7.0/DataExplorer/R/plot_scatterplot.r | 111 DataExplorer-0.7.0/DataExplorer/R/plot_str.r | 15 DataExplorer-0.7.0/DataExplorer/R/profile_missing.r |only DataExplorer-0.7.0/DataExplorer/R/set_missing.r | 8 DataExplorer-0.7.0/DataExplorer/R/split_columns.r | 25 DataExplorer-0.7.0/DataExplorer/README.md | 150 DataExplorer-0.7.0/DataExplorer/build/vignette.rds |binary DataExplorer-0.7.0/DataExplorer/inst/doc/dataexplorer-intro.R | 181 - DataExplorer-0.7.0/DataExplorer/inst/doc/dataexplorer-intro.Rmd | 214 - DataExplorer-0.7.0/DataExplorer/inst/doc/dataexplorer-intro.html | 1698 ++++++++-- DataExplorer-0.7.0/DataExplorer/inst/rmd_template/report.rmd | 100 DataExplorer-0.7.0/DataExplorer/man/create_report.Rd | 15 DataExplorer-0.7.0/DataExplorer/man/dot-getAllMissing.Rd |only DataExplorer-0.7.0/DataExplorer/man/dot-getPageLayout.Rd |only DataExplorer-0.7.0/DataExplorer/man/dot-ignoreCat.Rd |only DataExplorer-0.7.0/DataExplorer/man/dot-lapply.Rd |only DataExplorer-0.7.0/DataExplorer/man/drop_columns.Rd | 1 DataExplorer-0.7.0/DataExplorer/man/dummify.Rd | 12 DataExplorer-0.7.0/DataExplorer/man/figures |only DataExplorer-0.7.0/DataExplorer/man/group_category.Rd | 1 DataExplorer-0.7.0/DataExplorer/man/introduce.Rd | 5 DataExplorer-0.7.0/DataExplorer/man/plotDataExplorer.Rd |only DataExplorer-0.7.0/DataExplorer/man/plotDataExplorer.grid.Rd |only DataExplorer-0.7.0/DataExplorer/man/plotDataExplorer.multiple.Rd |only DataExplorer-0.7.0/DataExplorer/man/plotDataExplorer.single.Rd |only DataExplorer-0.7.0/DataExplorer/man/plot_bar.Rd | 42 DataExplorer-0.7.0/DataExplorer/man/plot_boxplot.Rd | 41 DataExplorer-0.7.0/DataExplorer/man/plot_correlation.Rd | 30 DataExplorer-0.7.0/DataExplorer/man/plot_density.Rd | 40 DataExplorer-0.7.0/DataExplorer/man/plot_histogram.Rd | 40 DataExplorer-0.7.0/DataExplorer/man/plot_intro.Rd |only DataExplorer-0.7.0/DataExplorer/man/plot_missing.Rd | 28 DataExplorer-0.7.0/DataExplorer/man/plot_prcomp.Rd | 27 DataExplorer-0.7.0/DataExplorer/man/plot_qq.Rd |only DataExplorer-0.7.0/DataExplorer/man/plot_scatterplot.Rd | 46 DataExplorer-0.7.0/DataExplorer/man/plot_str.Rd | 1 DataExplorer-0.7.0/DataExplorer/man/profile_missing.Rd |only DataExplorer-0.7.0/DataExplorer/man/set_missing.Rd | 1 DataExplorer-0.7.0/DataExplorer/man/split_columns.Rd | 1 DataExplorer-0.7.0/DataExplorer/tests/testthat/test-create-report.r | 54 DataExplorer-0.7.0/DataExplorer/tests/testthat/test-dummify.r | 29 DataExplorer-0.7.0/DataExplorer/tests/testthat/test-internal.r |only DataExplorer-0.7.0/DataExplorer/tests/testthat/test-plot-bar.r | 10 DataExplorer-0.7.0/DataExplorer/tests/testthat/test-plot-correlation.r | 5 DataExplorer-0.7.0/DataExplorer/tests/testthat/test-plot-histogram-density.r | 18 DataExplorer-0.7.0/DataExplorer/tests/testthat/test-plot-intro.r |only DataExplorer-0.7.0/DataExplorer/tests/testthat/test-plot-missing.r | 20 DataExplorer-0.7.0/DataExplorer/tests/testthat/test-plot-prcomp.r |only DataExplorer-0.7.0/DataExplorer/tests/testthat/test-plot-qq.r |only DataExplorer-0.7.0/DataExplorer/tests/testthat/test-plot-str.r | 9 DataExplorer-0.7.0/DataExplorer/tests/testthat/test-profile-missing.r |only DataExplorer-0.7.0/DataExplorer/tests/testthat/test-split-columns.r | 19 DataExplorer-0.7.0/DataExplorer/vignettes/dataexplorer-intro.Rmd | 214 - 75 files changed, 3037 insertions(+), 1416 deletions(-)