Title: Extracts Features from Text
Description: A tool for extracting some generic features (e.g., number of
words, line breaks, characters per word, URLs, lower case, upper case,
commas, periods, exclamation points, etc.) from strings of text.
Author: Michael Wayne Kearney [aut, cre]
(<https://orcid.org/0000-0002-0730-4694>)
Maintainer: Michael Wayne Kearney <kearneymw@missouri.edu>
Diff between textfeatures versions 0.1.1 dated 2018-03-06 and 0.2.0 dated 2018-10-29
DESCRIPTION | 19 +- MD5 | 31 ++-- NAMESPACE | 18 ++ NEWS.md | 29 ++++ R/count.R | 104 ++++++++++++-- R/min_var.R |only R/scale.R |only R/sysdata.rda |only R/textfeatures.R | 274 ++++++++++++++++++++++++------------- R/utils.R | 111 +++++++++++++-- R/word2vec.R |only README.md | 325 ++++++++++++++++++++++++++++++++++----------- man/figures |only man/min_var.Rd |only man/scale_count.Rd |only man/textfeatures.Rd | 33 +++- src |only tests/testthat/test-main.R | 25 ++- tools/readme/readme.png |binary 19 files changed, 730 insertions(+), 239 deletions(-)
Title: R Interface for H2O Sparkling Water
Description: An extension package for 'sparklyr' that provides an R interface to
H2O Sparkling Water machine learning library (see <https://github.com/h2oai/sparkling-water> for more information).
Author: Jakub Hava [aut, cre],
Navdeep Gill [aut],
Erin LeDell [aut],
Michal Malohlava [aut],
JJ Allaire [aut],
H2O.ai [cph],
RStudio [cph]
Maintainer: Jakub Hava <jakub@h2o.ai>
Diff between rsparkling versions 0.2.11 dated 2018-10-17 and 0.2.12 dated 2018-10-29
rsparkling-0.2.11/rsparkling/tests/testthat/h2ologs |only rsparkling-0.2.12/rsparkling/DESCRIPTION | 6 +-- rsparkling-0.2.12/rsparkling/MD5 | 39 +------------------- rsparkling-0.2.12/rsparkling/R/sysdata.rda |binary 4 files changed, 5 insertions(+), 40 deletions(-)
Title: Analysis of Ecotoxicology
Description: A simple approach to using a probit or logit analysis to calculate
lethal concentration (LC) or time (LT) and the appropriate fiducial
confidence limits desired for selected LC or LT for
ecotoxicology studies (Finney 1971; Wheeler et al. 2006;
Robertson et al. 2007). The simplicity of 'ecotox' comes from the
syntax it implies within its functions which are similar to functions
like glm() and lm(). In addition to the simplicity of the syntax,
a comprehensive data frame is produced which gives the user a
predicted LC or LT value for the desired level and a suite of important
parameters such as fiducial confidence limits and slope.
Finney, D.J. (1971, ISBN: 052108041X);
Wheeler, M.W., Park, R.M., and Bailer, A.J. (2006) <doi:10.1897/05-320R.1>;
Robertson, J.L., Savin, N.E., Russell, R.M., and Preisler, H.K.
(2007, ISBN: 0849323312).
Author: Benjamin L Hlina [aut, cre]
Maintainer: Benjamin L Hlina <benjamin.hlina@gmail.com>
Diff between ecotox versions 1.3.2 dated 2018-06-28 and 1.3.3 dated 2018-10-29
DESCRIPTION | 12 +-- MD5 | 38 +++++------ NAMESPACE | 2 R/LCx.R | 132 ++++++++++++++++++++++---------------- R/LTx.R | 136 +++++++++++++++++++++++----------------- R/lampreytime.R | 2 R/lampreytox.R | 6 - README.md | 22 +++++- data/lampreytime.rda |binary data/lampreytox.rda |binary man/LC_logit.Rd | 11 ++- man/LC_probit.Rd | 11 ++- man/LT_logit.Rd | 11 ++- man/LT_probit.Rd | 11 ++- man/lampreytime.Rd | 2 man/lampreytox.Rd | 6 - tests/testthat/test-LC_logit.R | 29 ++++++++ tests/testthat/test-LC_probit.R | 27 +++++++ tests/testthat/test-LT_logit.R | 30 ++++++++ tests/testthat/test-LT_probit.R | 31 +++++++++ 20 files changed, 356 insertions(+), 163 deletions(-)
Title: Simulate Package Installation and Attach
Description: Simulates the process of installing a package
and then attaching it. This is a key part of the 'devtools' package as it
allows you to rapidly iterate while developing a package.
Author: Hadley Wickham [aut],
Jim Hester [aut, cre],
Winston Chang [aut],
RStudio [cph],
R Core team [ctb] (Some namespace and vignette code extracted from base
R)
Maintainer: Jim Hester <james.hester@rstudio.com>
Diff between pkgload versions 1.0.1 dated 2018-10-11 and 1.0.2 dated 2018-10-29
DESCRIPTION | 8 ++++---- MD5 | 37 +++++++++++++++++++------------------ NEWS.md | 6 ++++++ R/dev-help.r | 6 +++--- R/has_tests.R | 2 +- R/imports-env.r | 2 +- R/load.r | 31 +++++++++++++++++++++---------- R/namespace-env.r | 2 +- R/shims.r | 2 +- R/utils.R | 2 +- inst |only man/dev_example.Rd | 1 + man/dev_help.Rd | 4 ++-- man/load_all.Rd | 17 +++++++++++------ man/load_imports.Rd | 2 +- man/ns_env.Rd | 2 +- man/pkgtest.Rd | 2 +- man/system.file.Rd | 2 +- tests/testthat/test-dll.r | 2 +- tests/testthat/test-extraction.R | 2 +- 20 files changed, 78 insertions(+), 54 deletions(-)
Title: Extensions to 'ggplot2' for Radiation Spectra
Description: Additional annotations, and stats for plotting "light"
spectra with 'ggplot2', together with specializations of ggplot()
and plot() methods for spectral data stored in objects of the classes
defined in package 'photobiology' and a plot() method for objects of
class "waveband", also defined in package 'photobiology'. Part of the
'r4photobiology' suite, Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] (<https://orcid.org/0000-0003-3385-972X>),
Titta K. Kotilainen [ctb] (<https://orcid.org/0000-0002-2822-9734>)
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggspectra versions 0.3.0 dated 2018-10-08 and 0.3.1 dated 2018-10-29
DESCRIPTION | 8 MD5 | 39 - NAMESPACE | 2 NEWS | 8 R/axis-utils-source-spct.R | 56 + R/plot-response-spct.r | 36 - R/plot-source-spct.r | 61 +- R/stat-label-peaks.R | 6 inst/doc/userguide1-grammar.R | 3 inst/doc/userguide1-grammar.Rmd | 3 inst/doc/userguide1-grammar.html | 1033 +++++++++++++++++----------------- inst/doc/userguide2-plot-methods.R | 3 inst/doc/userguide2-plot-methods.Rmd | 3 inst/doc/userguide2-plot-methods.html | 9 man/duration2character.Rd |only man/figures/README-example-1.png |binary man/figures/README-example2-1.png |binary man/plot.response_spct.Rd | 5 man/scale_y_s.e.irrad_continuous.Rd | 20 vignettes/userguide1-grammar.Rmd | 3 vignettes/userguide2-plot-methods.Rmd | 3 21 files changed, 725 insertions(+), 576 deletions(-)
Title: Survival Analysis
Description: Contains the core survival analysis routines, including
definition of Surv objects,
Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models,
and parametric accelerated failure time models.
Author: Terry M Therneau [aut, cre],
Thomas Lumley [ctb, trl] (original S->R port and R maintainer until
2009)
Maintainer: Terry M Therneau <therneau.terry@mayo.edu>
Diff between survival versions 2.42-6 dated 2018-07-13 and 2.43-1 dated 2018-10-29
survival-2.42-6/survival/R/agexact.fit.S |only survival-2.42-6/survival/R/coxph.fit.S |only survival-2.42-6/survival/R/residuals.survreg.penal.S |only survival-2.42-6/survival/R/summary.coxph.S |only survival-2.42-6/survival/R/summary.coxph.penal.S |only survival-2.42-6/survival/noweb/concordance2.Rnw |only survival-2.42-6/survival/noweb/plot.Rnw.orig |only survival-2.43-1/survival/Changes |only survival-2.43-1/survival/DESCRIPTION | 6 survival-2.43-1/survival/MD5 | 181 - survival-2.43-1/survival/NAMESPACE | 10 survival-2.43-1/survival/R/Surv.R | 3 survival-2.43-1/survival/R/agexact.fit.R |only survival-2.43-1/survival/R/agreg.fit.R | 6 survival-2.43-1/survival/R/concordance.R |only survival-2.43-1/survival/R/coxexact.fit.R | 8 survival-2.43-1/survival/R/coxpenal.fit.R | 3 survival-2.43-1/survival/R/coxph.R | 49 survival-2.43-1/survival/R/coxph.fit.R |only survival-2.43-1/survival/R/is.ratetable.R | 2 survival-2.43-1/survival/R/model.matrix.coxph.R | 3 survival-2.43-1/survival/R/print.coxph.S | 7 survival-2.43-1/survival/R/print.coxph.penal.S | 2 survival-2.43-1/survival/R/residuals.survreg.R | 65 survival-2.43-1/survival/R/residuals.survreg.penal.R |only survival-2.43-1/survival/R/summary.coxph.R |only survival-2.43-1/survival/R/summary.coxph.penal.R |only survival-2.43-1/survival/R/survSplit.R | 6 survival-2.43-1/survival/R/survdiff.S | 7 survival-2.43-1/survival/R/survfit.matrix.R | 44 survival-2.43-1/survival/R/survfitCI.R | 44 survival-2.43-1/survival/R/survfitms.R | 4 survival-2.43-1/survival/R/survreg.S | 3 survival-2.43-1/survival/R/tmerge.R | 47 survival-2.43-1/survival/build/vignette.rds |binary survival-2.43-1/survival/data/diabetic.rda |only survival-2.43-1/survival/data/udca.rda |only survival-2.43-1/survival/inst/NEWS.Rd | 44 survival-2.43-1/survival/inst/doc/adjcurve.pdf |binary survival-2.43-1/survival/inst/doc/compete.R | 55 survival-2.43-1/survival/inst/doc/compete.Rnw | 59 survival-2.43-1/survival/inst/doc/compete.pdf |binary survival-2.43-1/survival/inst/doc/concordance.R |only survival-2.43-1/survival/inst/doc/concordance.Rnw |only survival-2.43-1/survival/inst/doc/concordance.pdf |only survival-2.43-1/survival/inst/doc/multi.pdf |binary survival-2.43-1/survival/inst/doc/population.pdf |binary survival-2.43-1/survival/inst/doc/splines.pdf |binary survival-2.43-1/survival/inst/doc/tests.pdf |binary survival-2.43-1/survival/inst/doc/tiedtimes.pdf |binary survival-2.43-1/survival/inst/doc/timedep.pdf |binary survival-2.43-1/survival/inst/doc/validate.pdf |binary survival-2.43-1/survival/man/agreg.fit.Rd | 5 survival-2.43-1/survival/man/concordance.Rd |only survival-2.43-1/survival/man/coxph.object.Rd | 6 survival-2.43-1/survival/man/diabetic.Rd |only survival-2.43-1/survival/man/residuals.survreg.Rd | 34 survival-2.43-1/survival/man/survdiff.Rd | 8 survival-2.43-1/survival/man/survfit.formula.Rd | 13 survival-2.43-1/survival/man/survfit.matrix.Rd | 9 survival-2.43-1/survival/man/survival-internal.Rd | 4 survival-2.43-1/survival/man/tmerge.Rd | 11 survival-2.43-1/survival/man/udca.Rd |only survival-2.43-1/survival/noweb/Makefile | 7 survival-2.43-1/survival/noweb/agreg.Rnw | 10 survival-2.43-1/survival/noweb/concordance.Rnw | 1916 ++++++++++++------ survival-2.43-1/survival/noweb/coxph.Rnw | 63 survival-2.43-1/survival/noweb/coxsurv.Rnw | 1 survival-2.43-1/survival/noweb/exact.nw | 2 survival-2.43-1/survival/noweb/main.Rnw | 1 survival-2.43-1/survival/noweb/residuals.survreg.Rnw | 51 survival-2.43-1/survival/noweb/survconcordance.Rnw |only survival-2.43-1/survival/noweb/survfitCI.Rnw | 44 survival-2.43-1/survival/noweb/survfitms.Rnw | 4 survival-2.43-1/survival/noweb/tmerge.Rnw | 47 survival-2.43-1/survival/noweb/zph.Rnw | 93 survival-2.43-1/survival/noweb/zph2.Rnw |only survival-2.43-1/survival/src/concordance3.c |only survival-2.43-1/survival/src/cox_Rcallback.c | 3 survival-2.43-1/survival/src/dmatrix.c | 7 survival-2.43-1/survival/src/init.c | 2 survival-2.43-1/survival/src/survproto.h | 4 survival-2.43-1/survival/tests/bladder.Rout.save | 76 survival-2.43-1/survival/tests/book5.Rout.save | 12 survival-2.43-1/survival/tests/book6.Rout.save | 12 survival-2.43-1/survival/tests/cancer.Rout.save | 26 survival-2.43-1/survival/tests/concordance.R | 69 survival-2.43-1/survival/tests/concordance.Rout.save | 83 survival-2.43-1/survival/tests/concordance2.R |only survival-2.43-1/survival/tests/concordance2.Rout.save |only survival-2.43-1/survival/tests/concordance3.R |only survival-2.43-1/survival/tests/doaml.Rout.save | 18 survival-2.43-1/survival/tests/doweight.Rout.save | 30 survival-2.43-1/survival/tests/fr_kidney.Rout.save | 20 survival-2.43-1/survival/tests/fr_rat1.Rout.save | 18 survival-2.43-1/survival/tests/fr_rat2.Rout.save | 10 survival-2.43-1/survival/tests/fr_resid.Rout.save | 10 survival-2.43-1/survival/tests/jasa.Rout.save | 62 survival-2.43-1/survival/tests/ovarian.Rout.save | 72 survival-2.43-1/survival/tests/tmerge2.R | 32 survival-2.43-1/survival/tests/tmerge2.Rout.save | 40 survival-2.43-1/survival/tests/tmerge3.R | 13 survival-2.43-1/survival/tests/tmerge3.Rout.save | 18 survival-2.43-1/survival/vignettes/compete.Rnw | 59 survival-2.43-1/survival/vignettes/concordance.Rnw |only survival-2.43-1/survival/vignettes/refer.bib | 62 106 files changed, 2420 insertions(+), 1325 deletions(-)
Title: CML Calibration of Multi Stage Tests
Description: Conditional Maximum Likelihood Calibration and data management of multistage tests.
Functions for calibration of the Extended Nominal Response and the Interaction models, DIF and profile analysis.
See Robert J. Zwitser and Gunter Maris (2015)<doi:10.1007/s11336-013-9369-6>.
Author: Timo Bechger [aut, cre],
Jesse Koops [aut],
Ivailo Partchev [aut],
Gunter Maris [aut],
Robert Zwitser [ctb]
Maintainer: Timo Bechger <tmbechger@gmail.com>
Diff between dexterMST versions 0.1.0 dated 2018-07-28 and 0.1.1 dated 2018-10-29
DESCRIPTION | 15 +-- MD5 | 46 +++++------ NEWS | 5 + R/DIF.R | 20 +--- R/anon.R | 5 - R/data_selection.R | 32 ++++++- R/design_plot.R | 2 R/dexter.R | 4 R/enorm.R | 19 +++- R/misc.R | 28 +++--- R/profile_analysis.R | 14 +-- README.md | 42 +++++----- build/vignette.rds |binary inst/doc/multistage_fundamentals.R | 4 inst/doc/multistage_fundamentals.Rmd | 4 inst/doc/multistage_fundamentals.html | 138 ++++++++++++++++------------------ man/DIF_mst.Rd | 2 man/create_mst_test.Rd | 4 man/design_plot.Rd | 2 man/get_responses_mst.Rd | 4 man/reexports.Rd | 5 - tests/testthat/test_calibration.R | 13 ++- tests/testthat/test_inputs.R | 9 +- vignettes/multistage_fundamentals.Rmd | 4 24 files changed, 236 insertions(+), 185 deletions(-)
Title: Designs of Computer Experiments
Description: Space-Filling Designs and Uniformity Criteria.
Author: Jessica Franco, Delphine Dupuy, Olivier Roustant,
Patrice Kiener, Guillaume Damblin and Bertrand Iooss.
Maintainer: Celine Helbert <Celine.Helbert@ec-lyon.fr>
Diff between DiceDesign versions 1.7 dated 2015-06-15 and 1.8 dated 2018-10-29
DESCRIPTION | 14 MD5 | 103 +- NAMESPACE | 18 NEWS |only R/coverage.R | 71 - R/discrepancyCriteria.R | 2 R/dmaxDesign.R | 184 ++-- R/factDesign.R | 46 - R/fcts_optimalLHSDesigns.R | 867 ++++++++++---------- R/lhsDesign.R | 61 - R/meshRatio.R | 105 +- R/mindist.R | 54 - R/mstCriteria.R | 146 +-- R/nolhDesign.R |only R/nolhdrDesign.R |only R/olhDesign.R |only R/optimalLHSDesigns.R | 1931 ++++++++++++++++++++++----------------------- R/phiP.R | 45 - R/rss2d.R | 29 R/rss3d.R | 48 - R/runif.faure.R | 121 +- R/straussDesign.R | 97 +- R/unif.test.quantile.R | 2 R/unif.test.statistic.R | 2 R/wspDesign.R | 110 +- R/xDRDN.R |only data/NOLHDRdesigns.rda |only data/NOLHdesigns.rda |only data/datalist |only man/DiceDesign-package.Rd | 59 - man/NOLHDRdesigns.Rd |only man/NOLHdesigns.Rd |only man/OA131.Rd | 69 - man/OA131_scrambled.Rd | 5 man/coverage.Rd | 5 man/discrepESE_LHS.Rd | 134 +-- man/discrepSA_LHS.Rd | 142 +-- man/discrepancyCriteria.Rd | 136 +-- man/dmaxDesign.Rd | 142 +-- man/factDesign.Rd | 87 +- man/lhsDesign.Rd | 11 man/maximinESE_LHS.Rd | 134 +-- man/maximinSA_LHS.Rd | 143 +-- man/meshRatio.Rd | 20 man/mindist.Rd | 21 man/mstCriteria.Rd | 18 man/nolhDesign.Rd |only man/nolhdrDesign.Rd |only man/olhDesign.Rd |only man/phiP.Rd | 14 man/rss2d.Rd | 154 +-- man/rss3d.Rd | 184 ++-- man/runif.faure.Rd | 14 man/straussDesign.Rd | 172 ++-- man/unif.test.quantile.Rd | 26 man/unif.test.statistic.Rd | 54 - man/wspDesign.Rd | 12 man/xDRDN.Rd |only src/C_StraussDesign.c | 5 src/DiceDesign_init.c |only 60 files changed, 2966 insertions(+), 2851 deletions(-)
Title: Access your Coletum's Data from API
Description: Get your data (forms, structures, answers) from Coletum
<https://coletum.com> to handle and analyse.
Author: André Smaniotto [aut, cre],
Marcelo Magnani [aut],
Rodrigo Sant'Ana [aut],
GeoSapiens [cph, fnd]
Maintainer: André Smaniotto <smaniotto@geosapiens.com.br>
Diff between RColetum versions 0.1.2 dated 2018-07-02 and 0.2.0 dated 2018-10-29
DESCRIPTION | 8 MD5 | 28 NEWS.md | 21 R/GetAnswers.R | 107 R/GetFormStructure.R | 2 R/GetForms.R | 2 R/utils.R | 14 README.md | 2 man/GetAnswers.Rd | 34 man/GetFormStructure.Rd | 2 man/GetForms.Rd | 2 tests/testthat/test-GetAnswers.R | 186 tests/testthat/test-GetAnswersComplexForm.R | 8979 +++++++++++++++++++++++++++- tests/testthat/test-GetFormStructure.R | 24 tests/testthat/test-GetForms.R | 4 15 files changed, 9340 insertions(+), 75 deletions(-)
Title: Automatic Generation of Qualitative Color Palettes
Description: Automatic generation of distinct qualitative color palettes,
optionally adapted to color deficiency. It takes a subspace of the HSL color
space as input and projects it to the DIN99d color space where it selects
and return colors that are maximally distinct.
Author: Johan Larsson [aut, cre] (<https://orcid.org/0000-0002-4029-5945>)
Maintainer: Johan Larsson <mail@larssonjohan.com>
Diff between qualpalr versions 0.4.2 dated 2017-08-28 and 0.4.3 dated 2018-10-29
DESCRIPTION | 26 MD5 | 51 NAMESPACE | 28 NEWS.md | 11 R/RcppExports.R | 22 R/qualpal.R | 27 README.md | 201 - build/vignette.rds |binary inst/CITATION | 30 inst/doc/introduction.R | 156 inst/doc/introduction.html | 6218 ++++++++++++++++++++++++++++++++++++-- man/autopal.Rd | 126 man/pairs.qualpal.Rd | 62 man/plot.qualpal.Rd | 54 man/print.qualpal.Rd | 62 man/qualpal.Rd | 277 - man/qualpalr-package.Rd | 52 src/RcppExports.cpp | 4 src/qualpal.cpp | 27 tests/testthat/helper_dont_plot.R |only tests/testthat/setup.R |only tests/testthat/teardown.R |only tests/testthat/test_autopal.R | 2 tests/testthat/test_color.R | 2 tests/testthat/test_plotting.R | 14 tests/testthat/test_qualpal.R | 18 tools/README-pairs-1.png |binary tools/README-plot-1.png |binary 28 files changed, 6686 insertions(+), 784 deletions(-)
Title: Seasonal Adjustment of Daily Time Series
Description: Seasonal- and calendar adjustment of time series with daily frequency using the DSA approach developed by Ollech, Daniel (2018): Seasonal adjustment of daily time series. Bundesbank Discussion Paper 41/2018.
Author: Daniel Ollech [aut, cre]
Maintainer: Daniel Ollech <daniel.ollech@bundesbank.de>
Diff between dsa versions 0.60.24 dated 2018-10-26 and 0.60.32 dated 2018-10-29
DESCRIPTION | 6 ++-- MD5 | 16 +++++----- NEWS | 18 ++++++++++++ R/dsa.R | 84 ++++++++++++++++++++++++++++++++++++++------------------- R/makeCal.R | 2 - R/output.R | 9 ++---- man/dsa.Rd | 6 ++-- man/makeCal.Rd | 2 - man/output.Rd | 2 - 9 files changed, 96 insertions(+), 49 deletions(-)
Title: Implementation of 2D Correlation Analysis in R
Description: Implementation of two-dimensional (2D) correlation analysis based
on the Fourier-transformation approach described by Isao Noda (I. Noda
(1993) <DOI:10.1366/0003702934067694>). Additionally there are two plot
functions for the resulting correlation matrix: The first one creates
colored 2D plots, while the second one generates 3D plots.
Author: Robert Geitner [cre, aut],
Robby Fritzsch [aut],
Thomas Bocklitz [aut],
Juergen Popp [ctb, cph]
Maintainer: Robert Geitner <r.geitner@uu.nl>
Diff between corr2D versions 0.2.0 dated 2017-07-17 and 0.3.0 dated 2018-10-29
corr2D-0.2.0/corr2D/vignettes/corr2D.Rmd |only corr2D-0.3.0/corr2D/DESCRIPTION | 22 corr2D-0.3.0/corr2D/MD5 | 33 corr2D-0.3.0/corr2D/NAMESPACE | 1 corr2D-0.3.0/corr2D/R/FuranMale.R | 36 corr2D-0.3.0/corr2D/R/codys2d.R | 1 corr2D-0.3.0/corr2D/R/corr2d.R | 2 corr2D-0.3.0/corr2D/R/corr2d_plot.R | 938 +++++----- corr2D-0.3.0/corr2D/R/corr2t2d.R |only corr2D-0.3.0/corr2D/R/sim2ddata.R | 262 +- corr2D-0.3.0/corr2D/build/vignette.rds |binary corr2D-0.3.0/corr2D/inst/CITATION |only corr2D-0.3.0/corr2D/inst/doc/corr2D.Rmd | 8 corr2D-0.3.0/corr2D/inst/doc/corr2D.html | 18 corr2D-0.3.0/corr2D/inst/doc/corr2D_-_Implementation_of_2D_Correlation_Analysis_in_R.pdf |only corr2D-0.3.0/corr2D/inst/doc/corr2D_-_Implementation_of_2D_Correlation_Analysis_in_R.pdf.asis |only corr2D-0.3.0/corr2D/man/corr2t2d.Rd |only corr2D-0.3.0/corr2D/man/plot_corr2d.Rd | 13 corr2D-0.3.0/corr2D/man/plot_corr2din3d.Rd | 4 corr2D-0.3.0/corr2D/man/sim2ddata.Rd | 6 corr2D-0.3.0/corr2D/vignettes/corr2D_-_Implementation_of_2D_Correlation_Analysis_in_R.pdf.asis |only 21 files changed, 676 insertions(+), 668 deletions(-)
Title: Lighten your R Model Outputs
Description: The strip function deletes components of R model outputs that are useless for specific purposes, such as predict[ing], print[ing], summary[izing], etc.
Author: Paul Poncet [aut, cre]
Maintainer: Paul Poncet <paulponcet@yahoo.fr>
Diff between strip versions 0.1.7 dated 2018-08-02 and 1.0.0 dated 2018-10-29
strip-0.1.7/strip/R/strip.default.R |only strip-0.1.7/strip/R/strip.gam.R |only strip-0.1.7/strip/R/strip.glm.R |only strip-0.1.7/strip/R/strip.kmeans.R |only strip-0.1.7/strip/R/strip.lm.R |only strip-0.1.7/strip/R/strip.loess.R |only strip-0.1.7/strip/R/strip.randomForest.R |only strip-0.1.7/strip/R/strip.train.R |only strip-1.0.0/strip/DESCRIPTION | 8 ++--- strip-1.0.0/strip/MD5 | 26 +++++++++---------- strip-1.0.0/strip/NAMESPACE | 18 ++++++------- strip-1.0.0/strip/NEWS.md | 7 +++++ strip-1.0.0/strip/R/strip.R | 14 +++++++++- strip-1.0.0/strip/R/strip_.default.R |only strip-1.0.0/strip/R/strip_.gam.R |only strip-1.0.0/strip/R/strip_.glm.R |only strip-1.0.0/strip/R/strip_.kmeans.R |only strip-1.0.0/strip/R/strip_.lm.R |only strip-1.0.0/strip/R/strip_.loess.R |only strip-1.0.0/strip/R/strip_.randomForest.R |only strip-1.0.0/strip/R/strip_.train.R |only strip-1.0.0/strip/man/strip.Rd | 41 ++++++++++++++++-------------- 22 files changed, 68 insertions(+), 46 deletions(-)
Title: Calculate Cluster-Robust p-Values and Confidence Intervals
Description: Calculate p-values and confidence intervals using cluster-adjusted
t-statistics (based on Ibragimov and Muller (2010) <DOI:10.1198/jbes.2009.08046>, pairs cluster bootstrapped t-statistics, and wild cluster bootstrapped t-statistics (the latter two techniques based on Cameron, Gelbach, and Miller (2008) <DOI:10.1162/rest.90.3.414>. Procedures are included for use with GLM, ivreg, plm (pooling or fixed effects), and mlogit models.
Author: Justin Esarey [aut, cre]
Maintainer: Justin Esarey <justin@justinesarey.com>
Diff between clusterSEs versions 2.5 dated 2018-06-01 and 2.5.1 dated 2018-10-29
DESCRIPTION | 9 +++++---- MD5 | 16 ++++++++-------- R/clusterBS.mlogit.R | 2 +- man/cluster.bs.glm.Rd | 4 ++-- man/cluster.bs.ivreg.Rd | 4 ++-- man/cluster.bs.mlogit.Rd | 6 +++--- man/cluster.bs.plm.Rd | 4 ++-- man/cluster.wild.glm.Rd | 6 +++--- man/cluster.wild.ivreg.Rd | 6 +++--- 9 files changed, 29 insertions(+), 28 deletions(-)
Title: Bucky's Archive for Data Analysis in the Social Sciences
Description: Provides functions for various statistical techniques commonly used in the social sciences, including functions to compute clustered robust standard errors, combine results across multiply-imputed data sets, and simplify the addition of robust and clustered robust standard errors. The package was originally developed, in part, to assist porting of replication code from 'Stata' and attempts to replicate default options from 'Stata' where possible.
Author: Alexander Tahk [aut, cre]
Maintainer: Alexander Tahk <tahk@alum.mit.edu>
Diff between bucky versions 1.0.4 dated 2017-11-30 and 1.0.5 dated 2018-10-29
DESCRIPTION | 8 +++--- MD5 | 12 ++++----- NAMESPACE | 4 ++- NEWS | 5 +++ R/clustered-robust.R | 26 ++++++++++++++++++-- R/mult-imp.R | 66 +++++++++++++++++++++++++++++++++++++++++++++++---- build/partial.rdb |binary 7 files changed, 103 insertions(+), 18 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-29 0.1.1
2018-10-28 0.1.0
Title: Conditional Formatting in Data Frames
Description: Apply and visualize conditional formatting to data frames in R.
It renders a data frame with cells formatted according to
criteria defined by rules, using a tidy evaluation syntax. The table is
printed either opening a web browser or within the 'RStudio' viewer if
available. The conditional formatting rules allow to highlight cells
matching a condition or add a gradient background to a given column. This
package supports both 'HTML' and 'LaTeX' outputs in 'knitr' reports, and
exporting to an 'xlsx' file.
Author: Sergio Oller Moreno [aut, cph, cre]
(<https://orcid.org/0000-0002-8994-1549>)
Maintainer: Sergio Oller Moreno <sergioller@gmail.com>
Diff between condformat versions 0.7.0 dated 2017-10-19 and 0.8.0 dated 2018-10-29
condformat-0.7.0/condformat/NEWS |only condformat-0.7.0/condformat/man/render_rules_condformat_tbl.Rd |only condformat-0.8.0/condformat/DESCRIPTION | 26 condformat-0.8.0/condformat/MD5 | 119 +- condformat-0.8.0/condformat/NAMESPACE | 12 condformat-0.8.0/condformat/NEWS.md |only condformat-0.8.0/condformat/R/condformat.R | 16 condformat-0.8.0/condformat/R/condformat_render.R | 363 +-------- condformat-0.8.0/condformat/R/render_gtable.R |only condformat-0.8.0/condformat/R/render_html.R |only condformat-0.8.0/condformat/R/render_latex.R |only condformat-0.8.0/condformat/R/render_xlsx.R |only condformat-0.8.0/condformat/R/rule_css.R | 54 + condformat-0.8.0/condformat/R/rule_fill_bar.R |only condformat-0.8.0/condformat/R/rule_fill_discrete.R | 152 ++- condformat-0.8.0/condformat/R/rule_fill_gradient.R | 100 +- condformat-0.8.0/condformat/R/rule_fill_gradient2.R | 134 +-- condformat-0.8.0/condformat/R/rule_helper.R | 90 -- condformat-0.8.0/condformat/R/rule_text_bold.R |only condformat-0.8.0/condformat/R/rule_text_color.R |only condformat-0.8.0/condformat/R/shiny.R | 18 condformat-0.8.0/condformat/R/show_columns.R | 57 - condformat-0.8.0/condformat/R/show_rows.R | 40 - condformat-0.8.0/condformat/R/theme_caption.R |only condformat-0.8.0/condformat/R/theme_grob.R |only condformat-0.8.0/condformat/R/theme_htmlTable.R | 63 + condformat-0.8.0/condformat/R/theme_htmlWidget.R |only condformat-0.8.0/condformat/R/theme_kable.R |only condformat-0.8.0/condformat/README.md | 398 ---------- condformat-0.8.0/condformat/build/vignette.rds |binary condformat-0.8.0/condformat/inst/doc/introduction.R | 9 condformat-0.8.0/condformat/inst/doc/introduction.Rmd | 9 condformat-0.8.0/condformat/inst/doc/introduction.html | 183 ++-- condformat-0.8.0/condformat/man/cf_field_to_css.Rd |only condformat-0.8.0/condformat/man/cf_field_to_gtable.Rd |only condformat-0.8.0/condformat/man/cf_field_to_latex.Rd |only condformat-0.8.0/condformat/man/condformat.Rd | 8 condformat-0.8.0/condformat/man/condformat2excel.Rd | 6 condformat-0.8.0/condformat/man/condformat2grob.Rd |only condformat-0.8.0/condformat/man/condformat2html.Rd | 2 condformat-0.8.0/condformat/man/condformat2latex.Rd | 6 condformat-0.8.0/condformat/man/condformat2widget.Rd | 4 condformat-0.8.0/condformat/man/figures |only condformat-0.8.0/condformat/man/knit_print.condformat_tbl.Rd | 2 condformat-0.8.0/condformat/man/print.condformat_tbl.Rd | 7 condformat-0.8.0/condformat/man/reexports.Rd | 1 condformat-0.8.0/condformat/man/rule_css.Rd | 16 condformat-0.8.0/condformat/man/rule_fill_bar.Rd |only condformat-0.8.0/condformat/man/rule_fill_discrete.Rd | 23 condformat-0.8.0/condformat/man/rule_fill_discrete_.Rd | 4 condformat-0.8.0/condformat/man/rule_fill_discrete_old.Rd | 6 condformat-0.8.0/condformat/man/rule_fill_gradient.Rd | 29 condformat-0.8.0/condformat/man/rule_fill_gradient2.Rd | 30 condformat-0.8.0/condformat/man/rule_fill_gradient2_.Rd | 11 condformat-0.8.0/condformat/man/rule_fill_gradient2_old.Rd | 7 condformat-0.8.0/condformat/man/rule_fill_gradient_.Rd | 4 condformat-0.8.0/condformat/man/rule_fill_gradient_old.Rd | 5 condformat-0.8.0/condformat/man/rule_text_bold.Rd |only condformat-0.8.0/condformat/man/rule_text_color.Rd |only condformat-0.8.0/condformat/man/show_columns.Rd | 15 condformat-0.8.0/condformat/man/show_rows.Rd | 15 condformat-0.8.0/condformat/man/show_rows_old.Rd | 2 condformat-0.8.0/condformat/man/theme_caption.Rd |only condformat-0.8.0/condformat/man/theme_grob.Rd |only condformat-0.8.0/condformat/man/theme_htmlTable.Rd | 9 condformat-0.8.0/condformat/man/theme_htmlWidget.Rd |only condformat-0.8.0/condformat/man/theme_kable.Rd |only condformat-0.8.0/condformat/tests/testthat/test_rendering.R | 32 condformat-0.8.0/condformat/tests/testthat/test_rule_fill_bar.R |only condformat-0.8.0/condformat/tests/testthat/test_rule_fill_discrete.R | 32 condformat-0.8.0/condformat/tests/testthat/test_rule_text_bold.R |only condformat-0.8.0/condformat/tests/testthat/test_rule_text_color.R |only condformat-0.8.0/condformat/tests/testthat/test_show.R | 8 condformat-0.8.0/condformat/tests/testthat/test_theme_htmlTable.R | 9 condformat-0.8.0/condformat/vignettes/introduction.Rmd | 9 75 files changed, 829 insertions(+), 1316 deletions(-)
Title: Simultaneous Inference for Multiple Linear Contrasts in GEE
Models
Description: Provides global hypothesis tests, multiple testing procedures and simultaneous confidence intervals for multiple linear contrasts of regression
coefficients in a single generalized estimating equation (GEE) model or across multiple GEE models. GEE models are fit by a modified version of the 'geeM' package.
Author: Robin Ristl [aut, cre],
Lee McDaniel [ctb] (Author of 'geeM' package),
Nick Henderson [ctb] (Author of 'geeM' package),
Melanie Prague [ctb] (Contributor to 'geeM' package)
Maintainer: Robin Ristl <robin.ristl@meduniwien.ac.at>
Diff between mmmgee versions 1.12 dated 2018-07-04 and 1.13 dated 2018-10-29
mmmgee-1.12/mmmgee/R/Hypothesentest_funktion_verbessert_2-0Feb2018.R |only mmmgee-1.12/mmmgee/R/Paket_alle_Funktionen_Basis_v01_1-9Juli2018.R |only mmmgee-1.12/mmmgee/data/lesions.RData |only mmmgee-1.12/mmmgee/man/lesions.Rd |only mmmgee-1.13/mmmgee/DESCRIPTION | 10 ++--- mmmgee-1.13/mmmgee/MD5 | 16 ++++----- mmmgee-1.13/mmmgee/R/Hypothesentest_funktion_verbessert_2-1Okt2018.R |only mmmgee-1.13/mmmgee/R/Paket_alle_Funktionen_Basis_v01_2-0Okt2018.R |only mmmgee-1.13/mmmgee/data/keratosis.RData |only mmmgee-1.13/mmmgee/man/geem2.Rd | 17 +++++----- mmmgee-1.13/mmmgee/man/keratosis.Rd |only mmmgee-1.13/mmmgee/man/mmmgee.Rd | 8 ++-- mmmgee-1.13/mmmgee/man/mmmgee.test.Rd | 16 ++++----- 13 files changed, 34 insertions(+), 33 deletions(-)
Title: 'ECOS' Plugin for the 'R' Optimization Infrastructure
Description: Enhances the 'R' Optimization Infrastructure ('ROI') package
with the Embedded Conic Solver ('ECOS') for solving conic optimization problems.
Author: Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between ROI.plugin.ecos versions 0.3-0 dated 2017-10-22 and 0.3-1 dated 2018-10-29
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 8 ++++++-- R/plugin.R | 8 ++++---- R/zzz.R | 31 +++++++++++++++---------------- 5 files changed, 33 insertions(+), 30 deletions(-)
More information about ROI.plugin.ecos at CRAN
Permanent link
Title: Calculation of the Conventional and Self-Calibrating Palmer
Drought Severity Index
Description: Calculating the monthly conventional and self-calibrating Palmer
Drought Severity Index (PDSI and scPDSI) using the precipitation and potential
evapotranspiration data. The function to calculate PDSI is based on the C++
source codes developed by Nathan Wells, Steve Goddard and Michael J. Hayes,
University of Nebraska-Lincoln.
Reference: Palmer W. (1965). Meteorological drought.
U.s.department of Commerce Weather Bureau Research Paper,
<https://www.ncdc.noaa.gov/temp-and-precip/drought/docs/palmer.pdf>;
Wells N., Goddard S., Hayes M. J. (2004). A Self-Calibrating Palmer Drought Severity Index.
Journal of Climate, 17(12):2335-2351, <DOI:10.1175/1520-0442(2004)017%3C2335:ASPDSI%3E2.0.CO;2>.
Author: Ruida Zhong [aut, cre],
Xiaohong Chen [aut, ctb],
Zhaoli Wang [aut, ctb],
Chengguang Lai [aut, ctb],
Steve Goddard [ctb],
Nathan Wells [ctb],
Mike Hayes [ctb]
Maintainer: Ruida Zhong <zrd2017@163.com>
Diff between scPDSI versions 0.1.0 dated 2018-10-28 and 0.1.1 dated 2018-10-29
DESCRIPTION | 6 ++-- MD5 | 16 ++++++---- NAMESPACE | 10 ++++++ NEWS.md |only R/scpdsi.R | 82 ++++++++++++++++++++++++++++++++++++++++++++++++++----- README.md | 19 +++++++++--- man/pdsi.Rd | 8 ++--- man/plot.pdsi.Rd |only src/pdsi.cpp | 2 - src/pdsi.h | 2 - 10 files changed, 117 insertions(+), 28 deletions(-)
Title: An R-Shiny Application for Smith's Mean Measure of Divergence
(MMD)
Description: Offers a graphical user interface for the calculation of the mean measure of divergence, with facilities for trait selection and graphical representations.
Author: Frédéric Santos [aut, cre] (<https://orcid.org/0000-0003-1445-3871>)
Maintainer: Frédéric Santos <frederic.santos@u-bordeaux.fr>
Diff between AnthropMMD versions 2.5.1 dated 2018-10-19 and 2.5.2 dated 2018-10-29
DESCRIPTION | 8 +- MD5 | 8 +- inst/AnthropMMDShinyApp/server.R | 111 ++++++++++++++++----------------- inst/AnthropMMDShinyApp/validDataMMD.R | 4 - man/AnthropMMD-package.Rd | 4 - 5 files changed, 68 insertions(+), 67 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-14 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-10 1.3.1
2017-03-12 1.3.0
2015-11-13 1.2.1
2014-08-09 1.1-1
2013-10-10 1.1-0
2012-06-03 1.0
Title: Replicate Tariff Method for Verbal Autopsy
Description: Implement the Tariff algorithm for coding cause-of-death from verbal autopsies. The Tariff method was originally proposed in James et al (2011) <DOI:10.1186/1478-7954-9-31> and later refined as Tariff 2.0 in Serina, et al. (2015) <DOI:10.1186/s12916-015-0527-9>. Note that this package was not developed by authors affiliated with the Institute for Health Metrics and Evaluation and thus unintentional discrepancies may exist between the this implementation and the implementation available from IHME.
Author: Zehang Li, Tyler McCormick, Sam Clark
Maintainer: Zehang Li <lizehang@uw.edu>
Diff between Tariff versions 1.0.4 dated 2018-08-28 and 1.0.5 dated 2018-10-29
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/Tariff.r | 41 ++++++++++++++++++++++++++++------------- inst/NEWS.Rd | 6 ++++++ man/tariff.Rd | 2 +- 5 files changed, 44 insertions(+), 23 deletions(-)
Title: Utility Functions for 'spatstat'
Description: Contains utility functions for the 'spatstat' package
which may also be useful for other purposes.
Author: Adrian Baddeley [aut, cre],
Rolf Turner [aut],
Ege Rubak [aut]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.utils versions 1.10-0 dated 2018-10-01 and 1.12-0 dated 2018-10-29
DESCRIPTION | 8 +++---- MD5 | 18 ++++++++-------- NAMESPACE | 6 ++++- NEWS | 27 ++++++++++++++++++++++++ R/locator.R | 46 ++++++++++++++++++++++++++++++++++++++--- R/utiltext.R | 13 +++++++---- inst/doc/packagesizes.txt | 2 + man/percentage.Rd |only man/queueSpatstatLocator.Rd |only man/spatstat.utils-internal.Rd | 6 ++++- man/spatstatLocator.Rd | 11 ++++++++- 11 files changed, 114 insertions(+), 23 deletions(-)
More information about spatstat.utils at CRAN
Permanent link
Title: Reproducible Reports in Psychology
Description: Helper functions for producing reports in Psychology (Reproducible Research). Provides required formatted strings (APA style) for use in 'Sweave'/'Knitr' 'Latex' integration within *.Rnw files.
Author: Ian G Mackenzie
Maintainer: Ian G Mackenzie <ian.mackenzie@uni-tuebingen.de>
Diff between psychReport versions 0.2 dated 2018-09-16 and 0.4 dated 2018-10-29
DESCRIPTION | 8 +-- MD5 | 25 +++++------ R/aovDispMeans.R | 18 ++++---- R/aovEffectSize.R | 4 - R/aovSphericityAdjustment.R | 2 R/aovTable.R | 7 +-- R/meanStrAov.R | 4 - R/pValueString.R | 3 - R/printAovMeans.R | 74 ++++++++++----------------------- R/sphericityValueString.R | 7 --- README.md |only man/aovDispMeans.Rd | 10 ++-- man/printAovMeans.Rd | 6 +- tests/testthat/test-requiredPackages.R | 4 - 14 files changed, 71 insertions(+), 101 deletions(-)
Title: Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm
Description: Computes individual causes of death and population cause-specific mortality fractions using the 'InSilicoVA' algorithm from McCormick et al. (2016) <DOI:10.1080/01621459.2016.1152191>. It uses data derived from verbal autopsy (VA) interviews, in a format similar to the input of the widely used 'InterVA4' method. This package provides general model fitting and customization for 'InSilicoVA' algorithm and basic graphical visualization of the output.
Author: Zehang Li, Tyler McCormick, Sam Clark
Maintainer: Zehang Li <lizehang@gmail.com>
Diff between InSilicoVA versions 1.2.4 dated 2018-09-13 and 1.2.5 dated 2018-10-29
InSilicoVA-1.2.4/InSilicoVA/inst/NEWS.rd |only InSilicoVA-1.2.5/InSilicoVA/DESCRIPTION | 10 +-- InSilicoVA-1.2.5/InSilicoVA/MD5 | 22 +++---- InSilicoVA-1.2.5/InSilicoVA/NEWS.md |only InSilicoVA-1.2.5/InSilicoVA/R/insilico_core.r | 58 ++++++++++++++------ InSilicoVA-1.2.5/InSilicoVA/R/phy_debias.r | 8 ++ InSilicoVA-1.2.5/InSilicoVA/man/extract.prob.Rd | 4 - InSilicoVA-1.2.5/InSilicoVA/man/indivplot.Rd | 5 + InSilicoVA-1.2.5/InSilicoVA/man/insilico.Rd | 17 +++-- InSilicoVA-1.2.5/InSilicoVA/man/insilico.fit.Rd | 30 +++++----- InSilicoVA-1.2.5/InSilicoVA/man/insilico.train.Rd | 13 ++-- InSilicoVA-1.2.5/InSilicoVA/man/physician_debias.Rd | 2 InSilicoVA-1.2.5/InSilicoVA/man/stackplot.Rd | 8 +- 13 files changed, 106 insertions(+), 71 deletions(-)