Title: Stubbing and Setting Expectations on 'HTTP' Requests
Description: Stubbing and setting expectations on 'HTTP' requests.
Includes tools for stubbing 'HTTP' requests, including expected
request conditions and response conditions. Match on
'HTTP' method, query parameters, request body, headers and
more. Can be used for unit tests or outside of a testing
context.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
rOpenSci [fnd] (https://ropensci.org)
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>
Diff between webmockr versions 0.2.8 dated 2018-10-19 and 0.2.9 dated 2018-11-05
DESCRIPTION | 6 +- MD5 | 30 ++++++------ NEWS.md | 15 ++++++ R/RequestRegistry.R | 2 R/RequestSignature.R | 2 R/StubbedRequest.R | 2 R/adapter-httr.R | 2 R/flipswitch.R | 78 ++++++++++++++++++++++++++------- R/onload.R | 32 ------------- man/HttrAdapter.Rd | 2 man/enable.Rd | 16 +++--- tests/testthat/test-CrulAdapter.R | 2 tests/testthat/test-RequestSignature.R | 2 tests/testthat/test-StubbedRequest.R | 2 tests/testthat/test-flipswitch.R | 6 +- tests/testthat/test-stub_request.R | 2 16 files changed, 121 insertions(+), 80 deletions(-)
Title: Thermal Image Analysis
Description: A collection of functions and routines for inputting thermal
image video files, plotting and converting binary raw data into estimates of
temperature. First published 2015-03-26. Written primarily for research purposes
in biological applications of thermal images. v1 included the base calculations
for converting thermal image binary values to temperatures. v2 included additional
equations for providing heat transfer calculations and an import function for thermal
image files (v2.2.3 fixed error importing thermal image to windows OS). v3. Added numerous
functions for converting thermal image, videos, rewriting and exporting.
v3.1. Added new functions to convert files.
Author: Glenn J. Tattersall
Maintainer: Glenn J. Tattersall <gtatters@brocku.ca>
Diff between Thermimage versions 3.1.1 dated 2018-09-13 and 3.1.2 dated 2018-11-05
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- R/flirsettings.R | 8 -------- R/readflirJPG.R | 9 +-------- man/readflirJPG.Rd | 3 ++- 5 files changed, 13 insertions(+), 27 deletions(-)
Title: Run 'R CMD check' from 'R' and Capture Results
Description: Run 'R CMD check' from 'R' programmatically, and capture the
results of the individual checks.
Author: Gábor Csárdi
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between rcmdcheck versions 1.3.0 dated 2018-09-19 and 1.3.1 dated 2018-11-05
DESCRIPTION | 9 +++++---- MD5 | 17 +++++++++-------- R/api.R | 4 ++-- R/build.R | 8 ++++++-- R/package.R | 11 +++++++++-- R/session-info.R | 9 +++------ inst/NEWS.md | 8 ++++++++ man/check_details.Rd | 4 ++-- tests/testthat/test-build.R |only tests/testthat/test-rcmdcheck.R | 4 ++-- 10 files changed, 46 insertions(+), 28 deletions(-)
Title: Tidy Characterizations of Model Performance
Description: Tidy tools for quantifying how well model fits to a data set such as confusion matrices, class probability curve summaries, and regression metrics (e.g., RMSE).
Author: Max Kuhn [aut, cre],
Davis Vaughan [aut],
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between yardstick versions 0.0.1 dated 2017-11-12 and 0.0.2 dated 2018-11-05
yardstick-0.0.1/yardstick/R/classes.R |only yardstick-0.0.1/yardstick/R/probs.R |only yardstick-0.0.1/yardstick/R/recall.R |only yardstick-0.0.1/yardstick/R/regression.R |only yardstick-0.0.1/yardstick/R/sensitivity.R |only yardstick-0.0.1/yardstick/R/two_class.R |only yardstick-0.0.1/yardstick/tests/testthat/test_class.R |only yardstick-0.0.1/yardstick/tests/testthat/test_regression.R |only yardstick-0.0.1/yardstick/tests/testthat/test_two_class.R |only yardstick-0.0.2/yardstick/DESCRIPTION | 26 yardstick-0.0.2/yardstick/MD5 | 170 ++- yardstick-0.0.2/yardstick/NAMESPACE | 107 + yardstick-0.0.2/yardstick/NEWS.md | 109 ++ yardstick-0.0.2/yardstick/R/RcppExports.R |only yardstick-0.0.2/yardstick/R/aaa.R | 91 + yardstick-0.0.2/yardstick/R/class-accuracy.R |only yardstick-0.0.2/yardstick/R/class-bal_accuracy.R |only yardstick-0.0.2/yardstick/R/class-detection_prevalence.R |only yardstick-0.0.2/yardstick/R/class-f_meas.R |only yardstick-0.0.2/yardstick/R/class-j_index.R |only yardstick-0.0.2/yardstick/R/class-kap.R |only yardstick-0.0.2/yardstick/R/class-mcc.R |only yardstick-0.0.2/yardstick/R/class-npv.R |only yardstick-0.0.2/yardstick/R/class-ppv.R |only yardstick-0.0.2/yardstick/R/class-precision.R |only yardstick-0.0.2/yardstick/R/class-recall.R |only yardstick-0.0.2/yardstick/R/class-sens.R |only yardstick-0.0.2/yardstick/R/class-spec.R |only yardstick-0.0.2/yardstick/R/conf_mat.R | 339 +++--- yardstick-0.0.2/yardstick/R/estimator-helpers.R |only yardstick-0.0.2/yardstick/R/metrics.R | 538 ++++++++-- yardstick-0.0.2/yardstick/R/misc.R | 50 yardstick-0.0.2/yardstick/R/num-ccc.R |only yardstick-0.0.2/yardstick/R/num-mae.R |only yardstick-0.0.2/yardstick/R/num-mape.R |only yardstick-0.0.2/yardstick/R/num-rmse.R |only yardstick-0.0.2/yardstick/R/num-rpd.R |only yardstick-0.0.2/yardstick/R/num-rpiq.R |only yardstick-0.0.2/yardstick/R/num-rsq.R |only yardstick-0.0.2/yardstick/R/num-rsq_trad.R |only yardstick-0.0.2/yardstick/R/prob-gain_capture.R |only yardstick-0.0.2/yardstick/R/prob-gain_curve.R |only yardstick-0.0.2/yardstick/R/prob-helpers.R |only yardstick-0.0.2/yardstick/R/prob-lift_curve.R |only yardstick-0.0.2/yardstick/R/prob-mn_log_loss.R |only yardstick-0.0.2/yardstick/R/prob-pr_auc.R |only yardstick-0.0.2/yardstick/R/prob-pr_curve.R |only yardstick-0.0.2/yardstick/R/prob-roc_auc.R |only yardstick-0.0.2/yardstick/R/prob-roc_curve.R |only yardstick-0.0.2/yardstick/R/reexports.R |only yardstick-0.0.2/yardstick/R/selectors.R | 46 yardstick-0.0.2/yardstick/R/template.R |only yardstick-0.0.2/yardstick/R/validation.R |only yardstick-0.0.2/yardstick/R/vec2table.R | 48 yardstick-0.0.2/yardstick/README.md | 194 ++- yardstick-0.0.2/yardstick/build |only yardstick-0.0.2/yardstick/inst |only yardstick-0.0.2/yardstick/man/accuracy.Rd | 93 + yardstick-0.0.2/yardstick/man/bal_accuracy.Rd |only yardstick-0.0.2/yardstick/man/ccc.Rd |only yardstick-0.0.2/yardstick/man/conf_mat.Rd | 63 - yardstick-0.0.2/yardstick/man/detection_prevalence.Rd |only yardstick-0.0.2/yardstick/man/developer-helpers.Rd |only yardstick-0.0.2/yardstick/man/f_meas.Rd |only yardstick-0.0.2/yardstick/man/figures |only yardstick-0.0.2/yardstick/man/gain_capture.Rd |only yardstick-0.0.2/yardstick/man/gain_curve.Rd |only yardstick-0.0.2/yardstick/man/j_index.Rd |only yardstick-0.0.2/yardstick/man/kap.Rd |only yardstick-0.0.2/yardstick/man/lift_curve.Rd |only yardstick-0.0.2/yardstick/man/mae.Rd |only yardstick-0.0.2/yardstick/man/mape.Rd |only yardstick-0.0.2/yardstick/man/mcc.Rd | 99 + yardstick-0.0.2/yardstick/man/metric_set.Rd |only yardstick-0.0.2/yardstick/man/metric_summarizer.Rd |only yardstick-0.0.2/yardstick/man/metric_vec_template.Rd |only yardstick-0.0.2/yardstick/man/metrics.Rd | 80 - yardstick-0.0.2/yardstick/man/mn_log_loss.Rd |only yardstick-0.0.2/yardstick/man/npv.Rd |only yardstick-0.0.2/yardstick/man/ppv.Rd |only yardstick-0.0.2/yardstick/man/pr_auc.Rd |only yardstick-0.0.2/yardstick/man/pr_curve.Rd |only yardstick-0.0.2/yardstick/man/precision.Rd |only yardstick-0.0.2/yardstick/man/recall.Rd | 186 +-- yardstick-0.0.2/yardstick/man/reexports.Rd |only yardstick-0.0.2/yardstick/man/rmse.Rd | 131 +- yardstick-0.0.2/yardstick/man/roc_auc.Rd | 178 ++- yardstick-0.0.2/yardstick/man/roc_curve.Rd |only yardstick-0.0.2/yardstick/man/rpd.Rd |only yardstick-0.0.2/yardstick/man/rpiq.Rd |only yardstick-0.0.2/yardstick/man/rsq.Rd |only yardstick-0.0.2/yardstick/man/rsq_trad.Rd |only yardstick-0.0.2/yardstick/man/sens.Rd | 210 +-- yardstick-0.0.2/yardstick/man/spec.Rd |only yardstick-0.0.2/yardstick/man/summary.conf_mat.Rd | 58 - yardstick-0.0.2/yardstick/src |only yardstick-0.0.2/yardstick/tests/pycompare |only yardstick-0.0.2/yardstick/tests/testthat/helper-data.R |only yardstick-0.0.2/yardstick/tests/testthat/helper-macro-micro.R |only yardstick-0.0.2/yardstick/tests/testthat/helper-macro-prob.R |only yardstick-0.0.2/yardstick/tests/testthat/helper-read_pydata.R |only yardstick-0.0.2/yardstick/tests/testthat/test-auc.R |only yardstick-0.0.2/yardstick/tests/testthat/test-class-accuracy.R |only yardstick-0.0.2/yardstick/tests/testthat/test-class-bal_accuracy.R |only yardstick-0.0.2/yardstick/tests/testthat/test-class-detection_prevalence.R |only yardstick-0.0.2/yardstick/tests/testthat/test-class-f_meas.R |only yardstick-0.0.2/yardstick/tests/testthat/test-class-j_index.R |only yardstick-0.0.2/yardstick/tests/testthat/test-class-kap.R |only yardstick-0.0.2/yardstick/tests/testthat/test-class-mcc.R |only yardstick-0.0.2/yardstick/tests/testthat/test-class-npv.R |only yardstick-0.0.2/yardstick/tests/testthat/test-class-ppv.R |only yardstick-0.0.2/yardstick/tests/testthat/test-class-precision.R |only yardstick-0.0.2/yardstick/tests/testthat/test-class-recall.R |only yardstick-0.0.2/yardstick/tests/testthat/test-class-sens.R |only yardstick-0.0.2/yardstick/tests/testthat/test-class-spec.R |only yardstick-0.0.2/yardstick/tests/testthat/test-conf_mat.R |only yardstick-0.0.2/yardstick/tests/testthat/test-error-handling.R |only yardstick-0.0.2/yardstick/tests/testthat/test-flatten.R |only yardstick-0.0.2/yardstick/tests/testthat/test-global-option.R |only yardstick-0.0.2/yardstick/tests/testthat/test-numeric.R |only yardstick-0.0.2/yardstick/tests/testthat/test-prob-gain-lift.R |only yardstick-0.0.2/yardstick/tests/testthat/test-prob-gain_capture.R |only yardstick-0.0.2/yardstick/tests/testthat/test-prob-mn_log_loss.R |only yardstick-0.0.2/yardstick/tests/testthat/test-prob-pr.R |only yardstick-0.0.2/yardstick/tests/testthat/test-prob-roc.R |only yardstick-0.0.2/yardstick/tests/testthat/test_autoplot.R |only yardstick-0.0.2/yardstick/tests/testthat/test_metrics.R | 131 +- yardstick-0.0.2/yardstick/tests/testthat/test_selectors.R | 24 yardstick-0.0.2/yardstick/tests/testthat/test_vec2table.R |only yardstick-0.0.2/yardstick/vignettes |only 130 files changed, 2015 insertions(+), 956 deletions(-)
Title: A GUI for Planar Location Problems
Description: A GUI for the orloca package is provided as a Rcmdr plug-in. The package deals with planar location problems.
Author: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Maintainer: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Diff between RcmdrPlugin.orloca versions 4.6 dated 2018-07-06 and 4.7 dated 2018-11-05
RcmdrPlugin.orloca-4.6/RcmdrPlugin.orloca/inst/doc/localizacionplana.Rmd |only RcmdrPlugin.orloca-4.6/RcmdrPlugin.orloca/inst/doc/localizacionplana.html |only RcmdrPlugin.orloca-4.6/RcmdrPlugin.orloca/inst/doc/planarlocation.Rmd |only RcmdrPlugin.orloca-4.6/RcmdrPlugin.orloca/inst/doc/planarlocation.html |only RcmdrPlugin.orloca-4.6/RcmdrPlugin.orloca/vignettes/img/dialog.zsum.png |only RcmdrPlugin.orloca-4.6/RcmdrPlugin.orloca/vignettes/img/dialogo.zsum.png |only RcmdrPlugin.orloca-4.6/RcmdrPlugin.orloca/vignettes/localizacionplana.Rmd |only RcmdrPlugin.orloca-4.6/RcmdrPlugin.orloca/vignettes/planarlocation.Rmd |only RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/ChangeLog | 3 RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/DESCRIPTION | 19 +-- RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/MD5 | 50 ++++----- RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/NAMESPACE | 11 +- RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/R/RcmdrPlugin.Orloca.R | 53 ++++++---- RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/R/RcmdrPlugin.Orloca.fg.R | 8 - RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/build/vignette.rds |binary RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/inst/doc/localizacionplanaRcmdr.R |only RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/inst/doc/localizacionplanaRcmdr.Rmd |only RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/inst/doc/localizacionplanaRcmdr.html |only RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/inst/doc/planarlocationRcmdr.R |only RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/inst/doc/planarlocationRcmdr.Rmd |only RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/inst/doc/planarlocationRcmdr.html |only RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/inst/etc/menus.txt | 14 +- RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/inst/po/es/LC_MESSAGES/R-RcmdrPlugin.orloca.mo |binary RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/man/RcmdrPlugin.orloca-internal.Rd | 16 +-- RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/man/RcmdrPlugin.orloca-package.Rd | 10 - RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/man/RcmdrPlugin.orloca.es-package.Rd | 7 - RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/po/R-RcmdrPlugin.orloca-es.mo |binary RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/po/R-RcmdrPlugin.orloca-es.po | 24 +++- RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/po/R-RcmdrPlugin.orloca.pot | 18 ++- RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/vignettes/img/dialog.distsum.png |only RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/vignettes/img/dialog.solve.png |binary RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/vignettes/img/dialogo.distsum.png |only RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/vignettes/img/dialogo.solve.png |binary RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/vignettes/localizacionplanaRcmdr.Rmd |only RcmdrPlugin.orloca-4.7/RcmdrPlugin.orloca/vignettes/planarlocationRcmdr.Rmd |only 35 files changed, 137 insertions(+), 96 deletions(-)
More information about RcmdrPlugin.orloca at CRAN
Permanent link
Title: A Wrapper of the JavaScript Library 'DataTables'
Description: Data objects in R can be rendered as HTML tables using the
JavaScript library 'DataTables' (typically via R Markdown or Shiny). The
'DataTables' library has been included in this R package. The package name
'DT' is an abbreviation of 'DataTables'.
Author: Yihui Xie [aut, cre],
Joe Cheng [aut],
Xianying Tan [aut],
JJ Allaire [ctb],
Maximilian Girlich [ctb],
Greg Freedman Ellis [ctb],
Johannes Rauh [ctb],
jQuery contributors [ctb, cph] (jQuery in htmlwidgets/lib),
SpryMedia Limited [ctb, cph] (DataTables in htmlwidgets/lib),
Brian Reavis [ctb, cph] (selectize.js in htmlwidgets/lib),
Leon Gersen [ctb, cph] (noUiSlider in htmlwidgets/lib),
Bartek Szopka [ctb, cph] (jquery.highlight.js in htmlwidgets/lib),
RStudio Inc [cph]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between DT versions 0.4 dated 2018-01-30 and 0.5 dated 2018-11-05
DESCRIPTION | 25 LICENSE | 14 MD5 | 38 NAMESPACE | 3 NEWS.md | 42 R/datatables.R | 25 R/format.R | 43 R/shiny.R | 124 R/utils.R | 8 README.md | 2 build/vignette.rds |binary inst/doc/DT.html | 2585 +++++++++- inst/examples/DT-crosstalk |only inst/examples/DT-proxy/server.R | 23 inst/examples/DT-proxy/ui.R | 10 inst/htmlwidgets/datatables.js | 83 inst/htmlwidgets/lib/datatables-extensions/RowReorder/js/dataTables.rowReorder.min.js | 18 inst/htmlwidgets/lib/datatables-plugins/ellipsis |only man/datatable.Rd | 3 man/proxy.Rd | 25 man/styleInterval.Rd | 4 21 files changed, 2934 insertions(+), 141 deletions(-)
Title: Bayesian Analysis of Heterogeneous Treatment Effect
Description: It is vital to assess the heterogeneity of treatment effects
(HTE) when making health care decisions for an individual patient or a group
of patients. Nevertheless, it remains challenging to evaluate HTE based
on information collected from clinical studies that are often designed and
conducted to evaluate the efficacy of a treatment for the overall population.
The Bayesian framework offers a principled and flexible approach to estimate
and compare treatment effects across subgroups of patients defined by their
characteristics. This package allows users to explore a wide range of Bayesian
HTE analysis models, and produce posterior inferences about HTE. See Wang et al.
(2018) <DOI:10.18637/jss.v085.i07> for further details.
Author: Chenguang Wang [aut, cre],
Ravi Varadhan [aut],
Trustees of Columbia University [cph] (tools/make_cpp.R, R/stanmodels.R)
Maintainer: Chenguang Wang <cwang68@jhmi.edu>
Diff between beanz versions 2.3 dated 2018-06-13 and 2.4 dated 2018-11-05
DESCRIPTION | 19 - MD5 | 10 build/vignette.rds |binary inst/doc/beanz_vignettes.html | 557 +++++++++++++++++++----------------------- src/Makevars | 5 src/Makevars.win | 9 6 files changed, 274 insertions(+), 326 deletions(-)
Title: Tools for the Analysis of Air Pollution Data
Description: Tools to analyse, interpret and understand air
pollution data. Data are typically hourly time series
and both monitoring data and dispersion model output
can be analysed. Many functions can also be applied to
other data, including meteorological and traffic data.
Author: David Carslaw [aut, cre],
Karl Ropkins [aut]
Maintainer: David Carslaw <david.carslaw@york.ac.uk>
Diff between openair versions 2.5-0 dated 2018-09-10 and 2.6-0 dated 2018-11-05
DESCRIPTION | 8 MD5 | 144 - NAMESPACE | 268 +-- R/TheilSen.R | 1500 ++++++++--------- R/aqStats.R | 812 ++++----- R/calcPercentile.R | 167 - R/checkPrep.R | 314 +-- R/corPlot.R | 940 +++++----- R/cutData.R | 1288 +++++++------- R/getMeta.R | 252 +- R/importAURN.R | 506 ++--- R/importSAQN.R | 496 ++--- R/percentileRose.R | 1296 +++++++------- R/polarFreq.R | 974 +++++------ R/polarPlot.R | 2648 +++++++++++++++--------------- R/quickText.R | 392 ++-- R/scatterPlot.R | 3840 ++++++++++++++++++++++---------------------- R/smoothTrend.R | 1190 ++++++------- R/timeAverage.R | 1137 ++++++------- R/timeProp.R | 870 ++++----- R/timeVariation.R | 3 R/utilities.R | 2288 +++++++++++++------------- R/windRose.R | 1916 ++++++++++----------- man/TaylorDiagram.Rd | 566 +++--- man/TheilSen.Rd | 590 +++--- man/aqStats.Rd | 210 +- man/binData.Rd | 104 - man/bootMeanDF.Rd | 56 man/calcFno2.Rd | 226 +- man/calcPercentile.Rd | 134 - man/calendarPlot.Rd | 424 ++-- man/conditionalEval.Rd | 384 ++-- man/conditionalQuantile.Rd | 340 +-- man/corPlot.Rd | 313 +-- man/cutData.Rd | 326 +-- man/drawOpenKey.Rd | 372 ++-- man/import.Rd | 248 +- man/importADMS.Rd | 324 +-- man/importAURN.Rd | 278 +-- man/importAURNCsv.Rd | 364 ++-- man/importKCL.Rd | 1072 ++++++------ man/importMeta.Rd | 129 - man/importSAQN.Rd | 362 ++-- man/importTraj.Rd | 302 +-- man/kernelExceed.Rd | 310 +-- man/linearRelation.Rd | 306 +-- man/modStats.Rd | 302 +-- man/mydata.Rd | 106 - man/openColours.Rd | 188 +- man/openair.Rd | 188 +- man/percentileRose.Rd | 424 ++-- man/polarAnnulus.Rd | 532 +++--- man/polarCluster.Rd | 362 ++-- man/polarFreq.Rd | 442 ++--- man/polarPlot.Rd | 960 +++++------ man/quickText.Rd | 96 - man/rollingMean.Rd | 134 - man/scatterPlot.Rd | 756 ++++---- man/selectByDate.Rd | 162 - man/selectRunning.Rd | 118 - man/smoothTrend.Rd | 472 ++--- man/splitByDate.Rd | 88 - man/summaryPlot.Rd | 352 ++-- man/timeAverage.Rd | 434 ++-- man/timePlot.Rd | 662 +++---- man/timeProp.Rd | 312 +-- man/timeVariation.Rd | 628 +++---- man/trajCluster.Rd | 294 +-- man/trajLevel.Rd | 530 +++--- man/trajPlot.Rd | 326 +-- man/trendLevel.Rd | 428 ++-- man/windRose.Rd | 648 +++---- tools/unnamed-chunk-7-1.png |binary 73 files changed, 20471 insertions(+), 20462 deletions(-)
Title: Pipeline for Topological Data Analysis
Description: A comprehensive toolset for any
useR conducting topological data analysis, specifically via the
calculation of persistent homology in a Vietoris-Rips complex.
The tools this package currently provides can be conveniently split
into three main sections: (1) calculating persistent homology; (2)
conducting statistical inference on persistent homology calculations;
(3) visualizing persistent homology and statistical inference.
The published form of TDAstats can be found in Wadhwa et al. (2018)
<doi:10.21105/joss.00860>.
For a general background on computing persistent homology for
topological data analysis, see Otter et al. (2017)
<doi:10.1140/epjds/s13688-017-0109-5>.
To learn more about how the permutation test is used for
nonparametric statistical inference in topological data analysis,
read Robinson & Turner (2017) <doi:10.1007/s41468-017-0008-7>.
To learn more about how TDAstats calculates persistent homology,
you can visit the GitHub repository for Ripser, the software that
works behind the scenes at <https://github.com/Ripser/ripser>.
This package has been published as Wadhwa et al. (2018)
<doi:10.21105/joss.00860>.
Author: Raoul Wadhwa [aut, cre],
Andrew Dhawan [aut],
Drew Williamson [aut],
Jacob Scott [aut]
Maintainer: Raoul Wadhwa <raoulwadhwa@gmail.com>
Diff between TDAstats versions 0.3.0 dated 2018-08-05 and 0.4.0 dated 2018-11-05
DESCRIPTION | 18 MD5 | 82 +-- NAMESPACE | 21 R/RcppExports.R | 14 R/TDAstats.R | 30 - R/calculate.R | 166 +++--- R/data.R | 68 +- R/inference.R | 539 +++++++++++++-------- R/utility.R | 74 +- R/visuals.R | 254 +++++----- R/zzz.R | 17 build/vignette.rds |binary inst/CITATION |only inst/doc/inference.R | 162 +++--- inst/doc/inference.Rmd | 444 ++++++++--------- inst/doc/inference.html | 802 ++++++++++++++++---------------- inst/doc/inputformat.R | 124 ++-- inst/doc/inputformat.Rmd | 234 ++++----- inst/doc/inputformat.html | 529 ++++++++++++++------- inst/doc/intro.R | 102 ++-- inst/doc/intro.Rmd | 390 +++++++-------- inst/doc/intro.html | 777 ++++++++++++++++--------------- man/TDAstats.Rd | 32 - man/calculate_homology.Rd | 87 +-- man/circle2d.Rd | 36 - man/figures |only man/permutation_test.Rd | 81 +-- man/phom.dist.Rd |only man/plot_barcode.Rd | 88 +-- man/plot_persist.Rd | 88 +-- man/sphere3d.Rd | 36 - man/unif2d.Rd | 36 - man/unif3d.Rd | 36 - src/RcppExports.cpp | 9 src/ripser_short.cpp | 46 + tests/testthat.R | 8 tests/testthat/2dconsist-std |only tests/testthat/test_aaaload.R |only tests/testthat/test_calculate_errors.R |only tests/testthat/test_inference.R |only tests/testthat/test_inputformat.R |only tests/testthat/test_plots.R |only tests/testthat/test_ripser_accurate.R | 138 ++--- tests/testthat/test_ripser_consistent.R | 155 +++--- vignettes/inference.Rmd | 444 ++++++++--------- vignettes/inputformat.Rmd |only vignettes/intro.Rmd | 390 +++++++-------- 47 files changed, 3549 insertions(+), 3008 deletions(-)
Title: Data Exchange Between R and 'LabKey' Server
Description: The 'LabKey' client library for R makes it easy for R users to
load live data from a 'LabKey' Server, <http://www.labkey.com/>,
into the R environment for analysis, provided users have permissions
to read the data. It also enables R users to insert, update, and
delete records stored on a 'LabKey' Server, provided they have appropriate
permissions to do so.
Author: Peter Hussey
Maintainer: Cory Nathe <cnathe@labkey.com>
Diff between Rlabkey versions 2.2.3 dated 2018-10-11 and 2.2.4 dated 2018-11-05
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++++---------- NAMESPACE | 4 +++- NEWS | 5 +++++ R/labkey.importRows.R | 4 ++-- R/labkey.insertRows.R | 4 ++-- R/labkey.moduleProperty.R |only inst/doc/RlabkeyExample.pdf |binary man/Rlabkey-package.Rd | 4 ++-- man/labkey.domain.create.Rd | 1 + man/labkey.getBaseUrl.Rd |only man/labkey.getModuleProperty.Rd |only man/labkey.importRows.Rd | 3 ++- man/labkey.insertRows.Rd | 3 ++- man/labkey.setModuleProperty.Rd |only 15 files changed, 37 insertions(+), 23 deletions(-)
Title: Reproduce Statistical Analyses and Meta-Analyses
Description: Includes data analysis functions (e.g., to calculate effect sizes and 95% Confidence Intervals (CI) on Standardised Effect Sizes (d) for ABBA cross-over repeated-measures experimental designs), data presentation functions (e.g., density curve overlaid on histogram), and the data sets analyzed in different research papers in software engineering (e.g., related to software defect prediction or multi-site experiment concerning the extent to which structured abstracts were clearer and more complete than conventional abstracts) to streamline reproducible research in software engineering.
Author: Lech Madeyski [cre, aut, ctb],
Barbara Kitchenham [ctb] (Data and code contributor),
Marian Jureczko [ctb] (Data contributor),
David Budgen [ctb] (Data contributor),
Pearl Brereton [ctb] (Data contributor),
Jacky Keung [ctb] (Data contributor),
Stuart Charters [ctb] (Data contributor),
Shirley Gibbs [ctb] (Data contributor),
Amnart Pohthong [ctb] (Data contributor)
Maintainer: Lech Madeyski <lech.madeyski@gmail.com>
Diff between reproducer versions 0.2.0 dated 2018-11-03 and 0.2.1 dated 2018-11-05
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 7 +++++++ R/MetaAnalysisForFamiliesOfExperimentsSR.R | 1 + man/ExtractMAStatistics.Rd | 1 + 5 files changed, 17 insertions(+), 8 deletions(-)
Title: Tools to Read, Analyze and Visualize Metadynamics HILLS Files
from 'Plumed'
Description: Metadynamics is a state of the art biomolecular simulation technique.
'Plumed' Tribello, G.A. et al. (2014) <doi:10.1016/j.cpc.2013.09.018> program makes
it possible to perform metadynamics using various simulation codes. The results of
metadynamics done in 'Plumed' can be analyzed by 'metadynminer'. The package
'metadynminer' reads 1D and 2D metadynamics hills files from 'Plumed' package.
It uses a fast algorithm by Hosek, P. and Spiwok, V. (2016) <doi:10.1016/j.cpc.2015.08.037>
to calculate a free energy surface from hills. Minima can be located and plotted on
the free energy surface. Transition states can be analyzed by Nudged Elastic Band
method by Henkelman, G. and Jonsson, H. (2000) <doi:10.1063/1.1323224>. Free energy
surfaces, minima and transition paths can be plotted to produce publication quality
images.
Author: Vojtech Spiwok [aut, cre] (<https://orcid.org/0000-0001-8108-2033>)
Maintainer: Vojtech Spiwok <spiwokv@vscht.cz>
Diff between metadynminer versions 0.1.2 dated 2018-09-20 and 0.1.3 dated 2018-11-05
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 2 +- R/nebs.R | 12 ++++++++---- R/readingandfes.R | 27 ++++++++++++++++++--------- README.md | 6 ++++-- 6 files changed, 40 insertions(+), 25 deletions(-)
Title: Generalized Array Arithmetic for Ragged Arrays with Named
Margins
Description: Organize a so-called ragged array as generalized arrays, which
is simply an array with sub-dimensions denoting the subdivision of
dimensions (grouping of members within dimensions).
By the margins (names of dimensions and sub-dimensions) in generalized
arrays, operators and utility functions provided in this package
automatically match the margins,
doing map-reduce style parallel computation
along margins. Generalized arrays are also cooperative to R's native
functions that work on simple arrays.
Author: Qingsheng Huang
Maintainer: Qingsheng Huang <huangqqss@126.com>
Diff between garray versions 1.1.1 dated 2018-11-04 and 1.1.2 dated 2018-11-05
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NAMESPACE | 1 - R/garray.R | 17 +++++++++++++++-- R/main.R | 18 ++++++++++-------- R/zzz.R | 4 ++-- man/amult.Rd | 2 ++ man/garray-package.Rd | 15 ++++++++++++++- 8 files changed, 53 insertions(+), 24 deletions(-)
Title: Area-Proportional Euler and Venn Diagrams with Ellipses
Description: Generate area-proportional Euler diagrams
using numerical optimization. An Euler diagram is a generalization of a Venn
diagram, relaxing the criterion that all interactions need to be
represented. Diagrams may be fit with ellipses and circles via
a wide range of inputs and can be visualized in numerous ways.
Author: Johan Larsson [aut, cre] (<https://orcid.org/0000-0002-4029-5945>),
A. Jonathan R. Godfrey [ctb],
Peter Gustafsson [ctb],
David H. Eberly [ctb] (geometric algorithms),
Emanuel Huber [ctb] (root solver code)
Maintainer: Johan Larsson <mail@larssonjohan.com>
Diff between eulerr versions 4.1.0 dated 2018-04-20 and 5.0.0 dated 2018-11-05
eulerr-4.1.0/eulerr/inst/doc/introduction.Rnw |only eulerr-4.1.0/eulerr/inst/doc/introduction.pdf |only eulerr-4.1.0/eulerr/inst/doc/under-the-hood.Rnw |only eulerr-4.1.0/eulerr/inst/doc/under-the-hood.pdf |only eulerr-4.1.0/eulerr/man/dont_plot.Rd |only eulerr-4.1.0/eulerr/man/dont_print.Rd |only eulerr-4.1.0/eulerr/man/label_deprecated.Rd |only eulerr-4.1.0/eulerr/man/panel.euler.circles_deprecated.Rd |only eulerr-4.1.0/eulerr/man/panel.euler.ellipses_deprecated.Rd |only eulerr-4.1.0/eulerr/man/panel.euler.labels_deprecated.Rd |only eulerr-4.1.0/eulerr/man/panel.euler_deprecated.Rd |only eulerr-4.1.0/eulerr/man/prepanel.euler_deprecated.Rd |only eulerr-4.1.0/eulerr/src/conversions.h |only eulerr-4.1.0/eulerr/src/neldermead.h |only eulerr-4.1.0/eulerr/src/overlap_centers.cpp |only eulerr-4.1.0/eulerr/tests/testthat/test_inputs.R |only eulerr-4.1.0/eulerr/tests/testthat/test_plotting.R |only eulerr-4.1.0/eulerr/tests/testthat/test_reproducibility.R |only eulerr-4.1.0/eulerr/tests/testthat/test_utils.R |only eulerr-4.1.0/eulerr/tools |only eulerr-4.1.0/eulerr/vignettes/introduction.Rnw |only eulerr-4.1.0/eulerr/vignettes/under-the-hood.Rnw |only eulerr-5.0.0/eulerr/DESCRIPTION | 30 eulerr-5.0.0/eulerr/MD5 | 136 +- eulerr-5.0.0/eulerr/NAMESPACE | 8 eulerr-5.0.0/eulerr/NEWS.md | 53 eulerr-5.0.0/eulerr/R/RcppExports.R | 12 eulerr-5.0.0/eulerr/R/data.R |only eulerr-5.0.0/eulerr/R/error_plot.R |only eulerr-5.0.0/eulerr/R/euler-methods.R | 17 eulerr-5.0.0/eulerr/R/euler.R | 225 +-- eulerr-5.0.0/eulerr/R/eulerr_deprecated.R | 630 --------- eulerr-5.0.0/eulerr/R/eulerr_options.R | 43 eulerr-5.0.0/eulerr/R/geometry.R | 21 eulerr-5.0.0/eulerr/R/layout.R | 16 eulerr-5.0.0/eulerr/R/plot.euler.R | 389 +++-- eulerr-5.0.0/eulerr/R/print.euler.R | 16 eulerr-5.0.0/eulerr/R/utils.R | 115 + eulerr-5.0.0/eulerr/R/zzz.R | 16 eulerr-5.0.0/eulerr/README.md | 74 - eulerr-5.0.0/eulerr/build/vignette.rds |binary eulerr-5.0.0/eulerr/data |only eulerr-5.0.0/eulerr/inst/CITATION | 5 eulerr-5.0.0/eulerr/inst/WORDLIST |only eulerr-5.0.0/eulerr/inst/doc/introduction.R | 55 eulerr-5.0.0/eulerr/inst/doc/introduction.Rmd |only eulerr-5.0.0/eulerr/inst/doc/introduction.html |only eulerr-5.0.0/eulerr/inst/doc/under-the-hood.R | 173 -- eulerr-5.0.0/eulerr/inst/doc/under-the-hood.Rmd |only eulerr-5.0.0/eulerr/inst/doc/under-the-hood.html |only eulerr-5.0.0/eulerr/inst/doc/visualization.R |only eulerr-5.0.0/eulerr/inst/doc/visualization.Rmd |only eulerr-5.0.0/eulerr/inst/doc/visualization.html |only eulerr-5.0.0/eulerr/man/dummy_code.Rd |only eulerr-5.0.0/eulerr/man/error_plot.Rd |only eulerr-5.0.0/eulerr/man/euler.Rd | 86 - eulerr-5.0.0/eulerr/man/eulerr-package.Rd | 15 eulerr-5.0.0/eulerr/man/eulerr_deprecated.Rd | 63 eulerr-5.0.0/eulerr/man/eulerr_options.Rd | 8 eulerr-5.0.0/eulerr/man/figures |only eulerr-5.0.0/eulerr/man/fruits.Rd |only eulerr-5.0.0/eulerr/man/organisms.Rd |only eulerr-5.0.0/eulerr/man/pain.Rd |only eulerr-5.0.0/eulerr/man/plants.Rd |only eulerr-5.0.0/eulerr/man/plot.euler.Rd | 57 eulerr-5.0.0/eulerr/man/stress.Rd |only eulerr-5.0.0/eulerr/src/Makevars | 4 eulerr-5.0.0/eulerr/src/Makevars.win |only eulerr-5.0.0/eulerr/src/RcppExports.cpp | 47 eulerr-5.0.0/eulerr/src/areas.h | 239 +-- eulerr-5.0.0/eulerr/src/conic.h |only eulerr-5.0.0/eulerr/src/constants.h | 28 eulerr-5.0.0/eulerr/src/ellipse.h |only eulerr-5.0.0/eulerr/src/geometry.h | 136 -- eulerr-5.0.0/eulerr/src/helpers.h | 160 +- eulerr-5.0.0/eulerr/src/intersections.h | 97 - eulerr-5.0.0/eulerr/src/optim_final.cpp | 191 +- eulerr-5.0.0/eulerr/src/optim_init.cpp | 43 eulerr-5.0.0/eulerr/src/point.h |only eulerr-5.0.0/eulerr/src/solver.h | 49 eulerr-5.0.0/eulerr/src/transformations.h | 112 - eulerr-5.0.0/eulerr/src/utils.cpp | 49 eulerr-5.0.0/eulerr/tests/spelling.R |only eulerr-5.0.0/eulerr/tests/testthat/setup.R |only eulerr-5.0.0/eulerr/tests/testthat/test-accuracy.R |only eulerr-5.0.0/eulerr/tests/testthat/test-assertions.R |only eulerr-5.0.0/eulerr/tests/testthat/test-geometry.R |only eulerr-5.0.0/eulerr/tests/testthat/test-inputs.R |only eulerr-5.0.0/eulerr/tests/testthat/test-methods.R |only eulerr-5.0.0/eulerr/tests/testthat/test-montecarlo.R |only eulerr-5.0.0/eulerr/tests/testthat/test-plotting.R |only eulerr-5.0.0/eulerr/tests/testthat/test-reproducibility.R |only eulerr-5.0.0/eulerr/tests/testthat/test-utils.R |only eulerr-5.0.0/eulerr/vignettes/eulerr.bib | 848 +++---------- eulerr-5.0.0/eulerr/vignettes/introduction.Rmd |only eulerr-5.0.0/eulerr/vignettes/under-the-hood.Rmd |only eulerr-5.0.0/eulerr/vignettes/visualization.Rmd |only 97 files changed, 1448 insertions(+), 2818 deletions(-)
Title: A Graphical User Interface for Dexter
Description: Classical Test and Item analysis,
Item Response analysis and data management for educational and psychological tests.
Author: Jesse Koops, Eva de Schipper, Ivailo Partchev, Timo Bechger, Gunter Maris
Maintainer: jesse koops <jesse.koops@cito.nl>
Diff between dextergui versions 0.1.4 dated 2018-07-17 and 0.1.5 dated 2018-11-05
DESCRIPTION | 26 MD5 | 43 NAMESPACE | 10 NEWS.md | 6 R/abplot_ui.R | 20 R/docs.R | 7 R/example.R |only R/gui.R | 293 +-- R/misc.R | 113 + R/pvplot_ui.R |only R/serve.R | 3367 ++++++++++++++++++-------------------- R/spark.R | 75 R/tags.R | 145 + README.md | 9 inst/doc/dextergui.Rmd | 26 inst/doc/dextergui.html | 60 inst/extdata/manual.html | 60 inst/www/dt_extensions.js | 353 +++ inst/www/jquery.mousewheel.min.js |only inst/www/pr_helper.js | 12 inst/www/shinydexter.css | 330 ++- inst/www/shinydexter.js | 200 ++ man/dextergui.Rd | 20 vignettes/dextergui.Rmd | 26 24 files changed, 3033 insertions(+), 2168 deletions(-)
Title: Analysis of Data with Mixed Measurement Error and
Misclassification in Covariates
Description: Implementation of the augmented
Simulation-Extrapolation (SIMEX) algorithm proposed by Yi et al. (2015) <doi:10.1080/01621459.2014.922777>
for analyzing the data with mixed measurement error and misclassification. The main
function provides a similar summary output as that of glm() function. Both parametric and
empirical SIMEX are considered in the package.
Author: Qihuang Zhang <qihuang.zhang@uwaterloo.ca>, Grace Y. Yi <yyi@uwaterloo.ca>
Maintainer: Qihuang Zhang <qihuang.zhang@uwaterloo.ca>
Diff between augSIMEX versions 3.0 dated 2018-09-19 and 3.1 dated 2018-11-05
DESCRIPTION | 8 ++--- MD5 | 36 ++++++++++++------------ R/SIMEX_functions.R | 38 +++++++++++++++++++++++++ R/augSIMEX.R | 68 ++-------------------------------------------- man/GeneRepeat.Rd | 2 - man/ToyMult.Rd | 2 - man/ToyRepeat.Rd | 4 +- man/ToyUni.Rd | 2 - man/augSIMEX-package.Rd | 5 +-- man/augSIMEX.Rd | 18 ++++++------ man/coef.augSIMEX.Rd | 2 - man/glmscore.Rd | 2 - man/logLik.augSIMEX.Rd | 2 - man/plot.augSIMEX.Rd | 4 +- man/predict.augSIMEX.Rd | 2 - man/residuals.augSIMEX.Rd | 4 +- man/summary.augSIMEX.Rd | 15 ---------- src/scorecloglogcpp.cpp | 10 ------ src/scorelogitcpp.cpp | 6 ---- 19 files changed, 87 insertions(+), 143 deletions(-)
Title: Bridge Between 'R' and 'Scala' with Callbacks
Description: 'Scala' <http://www.scala-lang.org/> is embedded in 'R' and callbacks from 'Scala' to 'R' are available. Support is provided to write 'R' packages that access 'Scala'. After installation, please run 'rscala::scalaConfig()'.
Author: David B. Dahl [aut, cre]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between rscala versions 3.2.3 dated 2018-10-25 and 3.2.4 dated 2018-11-05
rscala-3.2.3/rscala/R/deprecated.R |only rscala-3.2.3/rscala/inst/README |only rscala-3.2.3/rscala/inst/java/scala-2.11/rscala_2.11-3.2.3.jar |only rscala-3.2.3/rscala/inst/java/scala-2.12/rscala_2.12-3.2.3.jar |only rscala-3.2.3/rscala/inst/java/scala-2.13.0-M5/rscala_2.13.0-M5-3.2.3.jar |only rscala-3.2.3/rscala/java/rscala_2.12-3.2.3-sources.jar |only rscala-3.2.3/rscala/man/scalaPackage.Rd |only rscala-3.2.3/rscala/man/scalaPackageUnload.Rd |only rscala-3.2.4/rscala/DESCRIPTION | 8 - rscala-3.2.4/rscala/MD5 | 41 ++++------ rscala-3.2.4/rscala/NAMESPACE | 3 rscala-3.2.4/rscala/NEWS | 14 ++- rscala-3.2.4/rscala/R/INTERNAL-checkConnection.R | 2 rscala-3.2.4/rscala/R/INTERNAL-io.R | 17 +++- rscala-3.2.4/rscala/R/INTERNAL-scalaInvoke.R | 9 +- rscala-3.2.4/rscala/R/scala.R | 11 +- rscala-3.2.4/rscala/R/scalaConfig.R | 24 +++-- rscala-3.2.4/rscala/R/scalaJARs.R | 7 + rscala-3.2.4/rscala/R/scalaSBT.R | 2 rscala-3.2.4/rscala/README.md |only rscala-3.2.4/rscala/inst/doc/rscala.pdf |binary rscala-3.2.4/rscala/inst/java/scala-2.11/rscala_2.11-3.2.4.jar |only rscala-3.2.4/rscala/inst/java/scala-2.12/rscala_2.12-3.2.4.jar |only rscala-3.2.4/rscala/inst/java/scala-2.13.0-M5/rscala_2.13.0-M5-3.2.4.jar |only rscala-3.2.4/rscala/java/rscala_2.12-3.2.4-sources.jar |only rscala-3.2.4/rscala/man/scalaConfig.Rd | 4 rscala-3.2.4/rscala/man/scalaJARs.Rd | 5 - rscala-3.2.4/rscala/man/scalaSBT.Rd | 3 28 files changed, 89 insertions(+), 61 deletions(-)
Title: Tools for Message Passing Between Processes
Description: Provides tools for passing messages between R processes.
Shiny Examples are provided showing how to perform useful tasks such as:
updating reactive values from within a future, progress bars for long running
async tasks, and interrupting async tasks based on user input.
Author: Ian E. Fellows
Maintainer: Ian E. Fellows <ian@fellstat.com>
Diff between ipc versions 0.1.0 dated 2018-09-17 and 0.1.1 dated 2018-11-05
ipc-0.1.0/ipc/LICENSE |only ipc-0.1.1/ipc/DESCRIPTION | 14 +++++---- ipc-0.1.1/ipc/LICENCE |only ipc-0.1.1/ipc/MD5 | 22 +++++++------- ipc-0.1.1/ipc/NAMESPACE | 1 ipc-0.1.1/ipc/R/package.R | 1 ipc-0.1.1/ipc/R/redis-source.R | 4 ++ ipc-0.1.1/ipc/README.md | 21 +++++++++++-- ipc-0.1.1/ipc/build/vignette.rds |binary ipc-0.1.1/ipc/inst/doc/shinymp.R | 1 ipc-0.1.1/ipc/inst/doc/shinymp.Rmd | 53 ++++++++++++++++++++++++++++++++++ ipc-0.1.1/ipc/inst/doc/shinymp.html | 55 ++++++++++++++++++++++++++++++++++-- ipc-0.1.1/ipc/vignettes/shinymp.Rmd | 53 ++++++++++++++++++++++++++++++++++ 13 files changed, 200 insertions(+), 25 deletions(-)
Title: A Statistically Sound 'data.frame' Processor/Conditioner
Description: A 'data.frame' processor/conditioner that prepares real-world data for predictive modeling in a statistically sound manner.
'vtreat' prepares variables so that data has fewer exceptional cases, making
it easier to safely use models in production. Common problems 'vtreat' defends
against: 'Inf', 'NA', too many categorical levels, rare categorical levels, and new
categorical levels (levels seen during application, but not during training). Reference:
"'vtreat': a data.frame Processor for Predictive Modeling", 'Zumel', 'Mount', 2016, DOI:10.5281/zenodo.1173314.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between vtreat versions 1.3.1 dated 2018-09-10 and 1.3.2 dated 2018-11-05
DESCRIPTION | 16 +- MD5 | 45 ++++--- NEWS.md | 6 + R/design_missing_Z.R | 19 +++ R/rquery_treatment.R | 1 README.md | 30 ++--- build/vignette.rds |binary inst/doc/MultiClassVtreat.R | 33 +++-- inst/doc/MultiClassVtreat.Rmd | 47 ++++--- inst/doc/MultiClassVtreat.html | 215 ++++-------------------------------- inst/doc/SavingTreamentPlans.html | 4 inst/doc/vtreat.html | 32 ++--- inst/doc/vtreatCrossFrames.html | 38 +++--- inst/doc/vtreatGrouping.html | 4 inst/doc/vtreatOverfit.html | 38 +++--- inst/doc/vtreatRareLevels.html | 4 inst/doc/vtreatScaleMode.html | 16 +- inst/doc/vtreatSignificance.html | 18 +-- inst/doc/vtreatSplitting.html | 4 inst/doc/vtreatVariableTypes.html | 42 +++---- inst/doc/vtreat_article.pdf |only inst/doc/vtreat_article.pdf.asis |only man/design_missingness_treatment.Rd | 4 vignettes/MultiClassVtreat.Rmd | 47 ++++--- vignettes/vtreat_article.pdf.asis |only 25 files changed, 276 insertions(+), 387 deletions(-)
Title: R Session Information
Description: Query and print information about the current R session.
It is similar to 'utils::sessionInfo()', but includes more information
about packages, and where they were installed from.
Author: Gábor Csárdi, R core, Hadley Wickham, Winston Chang,
Robert M Flight, Kirill Müller, Jim Hester
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between sessioninfo versions 1.1.0 dated 2018-09-25 and 1.1.1 dated 2018-11-05
DESCRIPTION | 6 - MD5 | 21 ++--- NEWS.md | 7 + R/dependent-packages.R | 12 ++- R/loaded-packages.R | 11 ++ R/osname.R | 2 R/package-info.R | 28 +++++-- R/utils.R | 2 tests/testthat/fixtures/fsdfgwetdhsdfhq4yqh_0.0.0.9000.tar.gz |only tests/testthat/test-dependent-packages.R | 2 tests/testthat/test-package-info.R | 4 - tests/testthat/test-warnings.R | 39 ++++++++++ 12 files changed, 107 insertions(+), 27 deletions(-)
Title: MR Spectroscopy Analysis Tools
Description: Tools for reading, visualising and processing Magnetic Resonance
Spectroscopy data.
Author: Martin Wilson [cre, aut],
John Muschelli [ctb]
Maintainer: Martin Wilson <martin@pipegrep.co.uk>
Diff between spant versions 0.11.0 dated 2018-07-20 and 0.12.0 dated 2018-11-05
DESCRIPTION | 10 MD5 | 417 ++- NAMESPACE | 355 +-- NEWS.md | 171 - R/amp_scaling.R | 374 +-- R/basis_set.R | 547 ++--- R/data.R | 4 R/fit_display.R | 542 ++--- R/fitting.R | 1091 +++++----- R/fp_corr_td.R | 142 - R/image_reg.R | 374 +-- R/interactive_plotting.R | 332 +-- R/mol_parameters.R | 1466 +++++++------ R/mrs_data_display.R | 1025 ++++----- R/mrs_data_io.R | 515 ++-- R/mrs_data_proc.R | 3683 +++++++++++++++++------------------ R/mrs_read_ima.R | 62 R/mrs_read_list_data.R | 204 - R/mrs_read_paravis.R | 132 - R/mrs_read_pfile.R | 353 +-- R/mrs_read_rda.R | 116 - R/mrs_read_spar_sdat.R | 350 +-- R/mrs_read_twix.R | 566 ++--- R/pulse_sequences.R | 1068 +++++----- R/pulse_shapes.R | 24 R/qm_simulation.R | 853 ++++---- R/rats.R | 290 +- R/spant.R | 284 +- R/utils.R | 671 +++--- R/varpro.R | 502 ++-- R/varpro_3_para.R | 448 ++-- build/vignette.rds |binary inst/doc/spant-intro.R | 80 inst/doc/spant-intro.Rmd | 114 - inst/doc/spant-intro.html | 528 +---- inst/reports/mpress_gaba.Rmd | 86 man/Arg.mrs_data.Rd |only man/Conj.mrs_data.Rd |only man/Im.mrs_data.Rd |only man/Mod.mrs_data.Rd |only man/N.Rd | 34 man/Nspec.Rd | 28 man/Re.mrs_data.Rd |only man/acquire.Rd | 46 man/align.Rd | 56 man/apodise_xy.Rd | 34 man/append_dyns.Rd | 38 man/apply_axes.Rd | 60 man/apply_mrs.Rd | 44 man/apply_pvc.Rd | 54 man/basis2mrs_data.Rd | 46 man/beta2lw.Rd | 38 man/calc_coil_noise_cor.Rd | 34 man/calc_coil_noise_sd.Rd | 34 man/calc_sd_poly.Rd | 42 man/calc_spec_diff.Rd | 42 man/calc_spec_snr.Rd | 66 man/check_lcm.Rd | 22 man/check_tqn.Rd | 22 man/comb_coils.Rd | 58 man/comb_csv_results.Rd | 42 man/comb_metab_ref.Rd | 38 man/conj.Rd | 34 man/conv_mrs.Rd |only man/crop_spec.Rd | 46 man/def_N.Rd | 28 man/def_acq_paras.Rd | 66 man/def_fs.Rd | 28 man/def_ft.Rd | 28 man/def_ref.Rd | 28 man/diff.mrs_data.Rd |only man/dyns.Rd | 34 man/ecc.Rd | 50 man/est_noise_sd.Rd | 46 man/fd2td.Rd | 34 man/fit_diags.Rd | 38 man/fit_mrs.Rd | 114 - man/fit_tab2csv.Rd | 36 man/fp_phase.Rd | 34 man/fp_phase_correct.Rd | 44 man/fs.Rd | 34 man/ft_shift.Rd | 34 man/ft_shift_mat.Rd | 38 man/gen_F.Rd | 42 man/gen_F_xy.Rd | 42 man/get_1h_brain_basis_paras.Rd | 48 man/get_1h_brain_basis_paras_v1.Rd | 48 man/get_1h_brain_basis_paras_v2.Rd |only man/get_acq_paras.Rd | 34 man/get_dyns.Rd | 40 man/get_even_dyns.Rd | 34 man/get_fh_dyns.Rd | 34 man/get_fit_map.Rd | 32 man/get_fp.Rd | 34 man/get_guassian_pulse.Rd | 36 man/get_metab.Rd | 34 man/get_mol_names.Rd | 32 man/get_mol_paras.Rd | 32 man/get_odd_dyns.Rd | 34 man/get_ref.Rd | 34 man/get_seg_ind.Rd | 42 man/get_sh_dyns.Rd | 34 man/get_slice.Rd | 38 man/get_svs_voi.Rd | 38 man/get_td_amp.Rd | 46 man/get_uncoupled_mol.Rd | 54 man/get_voi_seg.Rd | 38 man/get_voxel.Rd | 56 man/hsvd_filt.Rd | 46 man/ift_shift.Rd | 34 man/image.mrs_data.Rd | 83 man/int_spec.Rd | 46 man/interleave_dyns.Rd | 34 man/inv_even_dyns.Rd | 34 man/inv_odd_dyns.Rd | 34 man/is_fd.Rd | 38 man/lb.Rd | 54 man/lw2alpha.Rd |only man/lw2beta.Rd | 38 man/mat2mrs_data.Rd | 56 man/mean_dyn_blocks.Rd | 38 man/mean_dyn_pairs.Rd | 34 man/mean_dyns.Rd | 34 man/median_dyns.Rd | 34 man/mrs_data2basis.Rd | 42 man/mrs_data2mat.Rd | 38 man/mrs_data2vec.Rd |only man/mvfftshift.Rd | 38 man/n2coord.Rd | 32 man/peak_info.Rd | 62 man/phase.Rd | 42 man/plot.fit_result.Rd | 89 man/plot.mrs_data.Rd | 107 - man/plot_fit_slice.Rd | 44 man/plot_fit_slice_inter.Rd | 45 man/plot_slice_map.Rd | 74 man/plot_slice_map_inter.Rd | 69 man/plot_voi_overlay.Rd | 32 man/plot_voi_overlay_seg.Rd | 32 man/ppm.Rd | 50 man/print.fit_result.Rd | 32 man/print.mrs_data.Rd | 32 man/qn_states.Rd | 34 man/rats.Rd | 64 man/read_basis.Rd | 38 man/read_lcm_coord.Rd | 36 man/read_mrs.Rd | 68 man/read_mrs_dpt.Rd | 44 man/read_mrs_tqn.Rd | 64 man/read_tqn_fit.Rd | 44 man/read_tqn_result.Rd | 48 man/reexports.Rd | 32 man/rep_array_dim.Rd | 42 man/rep_dyn.Rd | 38 man/rep_mrs.Rd | 56 man/resample_voi.Rd | 38 man/rm_dyns.Rd | 40 man/scale_amp_molal_pvc.Rd | 50 man/scale_amp_molar.Rd | 50 man/scale_amp_ratio.Rd | 40 man/scale_amp_water_ratio.Rd | 38 man/seconds.Rd | 34 man/seq_cpmg_ideal.Rd | 50 man/seq_mega_press_ideal.Rd | 68 man/seq_press_ideal.Rd | 50 man/seq_pulse_acquire.Rd | 42 man/seq_pulse_acquire_31p.Rd | 42 man/seq_slaser_ideal.Rd | 56 man/seq_spin_echo_ideal.Rd | 46 man/seq_spin_echo_ideal_31p.Rd | 46 man/seq_steam_ideal.Rd | 50 man/set_def_acq_paras.Rd | 44 man/set_lcm_cmd.Rd | 28 man/set_ref.Rd | 32 man/set_td_pts.Rd | 42 man/set_tqn_cmd.Rd | 28 man/shift.Rd | 42 man/sim_basis.Rd | 64 man/sim_basis_1h_brain.Rd | 61 man/sim_basis_1h_brain_press.Rd | 60 man/sim_basis_tqn.Rd | 56 man/sim_brain_1h.Rd | 70 man/sim_mol.Rd | 64 man/sim_noise.Rd | 60 man/sim_resonances.Rd | 70 man/spant-package.Rd | 68 man/spant_mpress_drift.Rd | 28 man/spin_sys.Rd | 42 man/spm_pve2categorical.Rd | 38 man/stackplot.Rd | 32 man/stackplot.fit_result.Rd | 86 man/stackplot.mrs_data.Rd | 124 - man/sum_coils.Rd | 34 man/sum_dyns.Rd | 34 man/td2fd.Rd | 34 man/td_conv_filt.Rd | 42 man/tdsr.Rd | 52 man/varpro_3_para_opts.Rd | 87 man/varpro_opts.Rd | 82 man/vec2mrs_data.Rd | 56 man/write_basis.Rd | 34 man/write_basis_tqn.Rd | 46 man/write_mrs_dpt_v2.Rd | 42 man/write_mrs_lcm_raw.Rd |only man/zero_nzoc.Rd | 38 man/zf.Rd | 52 man/zf_xy.Rd | 40 tests/testthat.R | 8 tests/testthat/def_basis.rds |binary tests/testthat/fit_res_varpro.rds |binary tests/testthat/fit_res_varpro_3p.rds |binary tests/testthat/test_fitting.R | 34 tests/testthat/test_preproc.R | 8 tests/testthat/test_qm_sim.R | 10 vignettes/spant-intro.Rmd | 114 - 215 files changed, 12722 insertions(+), 12496 deletions(-)
Title: (Robust) Mediation Analysis
Description: Perform mediation analysis via a (fast and robust) bootstrap test.
Author: Andreas Alfons [aut, cre]
Maintainer: Andreas Alfons <alfons@ese.eur.nl>
Diff between robmed versions 0.2.0 dated 2018-09-25 and 0.3.0 dated 2018-11-05
DESCRIPTION | 12 - MD5 | 32 +-- NAMESPACE | 4 NEWS | 5 R/fit_mediation.R | 158 ++++++++++------ R/nobs.R | 8 R/print.R | 98 ++++++---- R/summary.R | 56 +++-- R/test_mediation.R | 399 +++++++++++++++++++++++++----------------- build/partial.rdb |binary man/coef.test_mediation.Rd | 4 man/confint.test_mediation.Rd | 8 man/fit_mediation.Rd | 45 +++- man/plot_mediation.Rd | 9 man/summary.test_mediation.Rd | 4 man/test_mediation.Rd | 60 ++++-- man/weights.cov_Huber.Rd | 3 17 files changed, 565 insertions(+), 340 deletions(-)
Title: Water Resources System Simulator
Description: Water resources system simulator is a tool for simulation and analysis of large-scale water resources systems. 'WRSS' proposes functions and methods for construction, simulation and analysis of primary storage and hydropower water resources features (e.g. reservoirs, aquifers, and etc.) based on Standard Operating Policy (SOP).
Author: Rezgar Arabzadeh; Parisa Aberi; Kaveh Panaghi; Shahab Araghinejad; Majid Montaseri
Maintainer: Rezgar Arabzadeh <rezgararabzadeh@ut.ac.ir>
Diff between WRSS versions 1.4 dated 2018-05-28 and 2.0 dated 2018-11-05
DESCRIPTION | 12 MD5 | 104 +-- NAMESPACE | 1 R/addObjectToArea.R | 127 +++- R/aquiferRouting.R | 107 ++- R/createAquifer.R | 2 R/createAquifer.base.R | 4 R/createAquifer.default.R | 8 R/createArea.base.R | 9 R/createArea.default.R | 17 R/createDemandSite.default.R | 18 R/createDiversion.default.R | 2 R/createReservoir.R | 2 R/createReservoir.base.R | 18 R/createReservoir.default.R | 64 +- R/diversionRouting.R | 84 ++- R/plot.sim.R | 162 +++-- R/reservoirRouting.R | 1100 +++++++++++++++++++++++++++++++++++----- R/risk.R | 2 R/riverRouting.R | 83 ++- R/sim.base.R | 110 ++-- man/WRSS-package.Rd | 104 +-- man/addObjectToArea.Rd | 391 +++++++------- man/aquiferRouting.Rd | 128 ++-- man/createAquifer.Rd | 38 - man/createAquifer.base.Rd | 42 - man/createAquifer.default.Rd | 38 - man/createArea.Rd | 21 man/createArea.base.Rd | 22 man/createArea.default.Rd | 24 man/createDemandSite.Rd | 41 - man/createDemandSite.base.Rd | 41 - man/createDemandSite.default.Rd | 45 - man/createDiversion.Rd | 24 man/createDiversion.base.Rd | 24 man/createDiversion.default.Rd | 26 man/createJunction.Rd | 12 man/createJunction.base.Rd | 12 man/createJunction.default.Rd | 12 man/createReservoir.Rd | 78 +- man/createReservoir.base.Rd | 87 +-- man/createReservoir.default.Rd | 66 +- man/createRiver.Rd | 28 - man/createRiver.base.Rd | 28 - man/createRiver.default.Rd | 28 - man/diversionRouting.Rd | 63 +- man/figures/Thumbs.db |binary man/reservoirRouting.Rd | 212 +++++-- man/risk.Rd | 30 - man/riverRouting.Rd | 72 +- man/sim.Rd | 4 man/sim.base.Rd | 4 man/sim.default.Rd | 4 53 files changed, 2384 insertions(+), 1401 deletions(-)
Title: Perseus R Interop
Description: Enables the interoperability between the Perseus platform for omics data analysis (Tyanova et al. 2016) <doi:10.1038/nmeth.3901> and R. It provides the foundation for developing and running Perseus plugins implemented in R by providing all required input and output handling, including data and parameter parsing as described in Rudolph and Cox 2018 <doi:10.1101/447268>.
Author: Jan Rudolph <rudolph@biochem.mpg.de>
Maintainer: Jan Rudolph <rudolph@biochem.mpg.de>
Diff between PerseusR versions 0.3.3 dated 2018-10-30 and 0.3.4 dated 2018-11-05
DESCRIPTION | 6 MD5 | 21 NEWS.md | 7 R/io.R | 114 ++-- R/matrixData.R | 10 README.md | 27 inst/doc/Using-Perseus-data-in-R.html | 952 ++++++++++++++++++++-------------- inst/extdata/matrix4.txt |only man/MatrixDataCheck.Rd | 3 man/main.Rd | 2 man/read.perseus.Rd | 17 tests/testthat/testIO.R | 18 12 files changed, 717 insertions(+), 460 deletions(-)
Title: eXtensible Time Series
Description: Provide for uniform handling of R's different time-based data classes by extending zoo, maximizing native format information preservation and allowing for user level customization and extension, while simplifying cross-class interoperability.
Author: Jeffrey A. Ryan [aut, cph],
Joshua M. Ulrich [cre, aut],
Ross Bennett [ctb],
Corwin Joy [ctb]
Maintainer: Joshua M. Ulrich <josh.m.ulrich@gmail.com>
Diff between xts versions 0.11-1 dated 2018-09-12 and 0.11-2 dated 2018-11-05
DESCRIPTION | 6 +++--- MD5 | 26 +++++++++++++------------- NAMESPACE | 10 +++++++--- NEWS | 26 ++++++++++++++++++++++++++ R/merge.R | 14 +++++++++++++- R/toperiod.R | 2 ++ R/xts.R | 2 +- R/zzz.R | 31 +++++++++++++++++++++++++++++++ inst/doc/xts-faq.pdf |binary inst/doc/xts.pdf |binary inst/unitTests/runit.merge.R | 12 ++++++++++++ inst/unitTests/runit.period.apply.R | 10 ++++++++++ inst/unitTests/runit.subset.R | 14 ++++++++++++++ src/binsearch.c | 25 +++++++++++++++++++------ 14 files changed, 151 insertions(+), 27 deletions(-)
Title: Methods for Analyzing Binned Income Data
Description: Methods for model selection, model averaging, and calculating metrics, such as the Gini, Theil, Mean Log Deviation, etc, on binned income data where the topmost bin is right-censored. We provide both a non-parametric method, termed the bounded midpoint estimator (BME), which assigns cases to their bin midpoints; except for the censored bins, where cases are assigned to an income estimated by fitting a Pareto distribution. Because the usual Pareto estimate can be inaccurate or undefined, especially in small samples, we implement a bounded Pareto estimate that yields much better results. We also provide a parametric approach, which fits distributions from the generalized beta (GB) family. Because some GB distributions can have poor fit or undefined estimates, we fit 10 GB-family distributions and use multimodel inference to obtain definite estimates from the best-fitting distributions. We also provide binned income data from all United States of America school districts, counties, and states.
Author: Samuel V. Scarpino, Paul von Hippel, and Igor Holas
Maintainer: Samuel V. Scarpino <s.scarpino@northeastern.edu>
Diff between binequality versions 1.0.3 dated 2018-02-18 and 1.0.4 dated 2018-11-05
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/getMids.R | 6 +++++- R/midStats.R | 4 ++-- data/county_bins.rda |binary data/school_district_bins.rda |binary data/state_bins.rda |binary man/binequality-package.Rd | 4 ++-- man/getMids.Rd | 3 +-- man/midStats.Rd | 13 ++++++++++--- 10 files changed, 33 insertions(+), 23 deletions(-)
Title: Install and Load Any Package from CRAN, Bioconductor or Github
Description: Made to make your life simpler with packages, by
installing and loading a list of packages, whether they are on CRAN,
Bioconductor or github. For github, if you do not have the full path, with
the maintainer name in it (e.g. "achateigner/topReviGO"), it will be able to
load it but not to install it.
Author: Aurelien Chateigner [aut, cre]
Maintainer: Aurelien Chateigner <aurelien.chateigner@gmail.com>
Diff between anyLib versions 1.0.4 dated 2018-07-20 and 1.0.5 dated 2018-11-05
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/anyLib.R | 4 ++-- inst/doc/help.html | 12 ++++++------ 4 files changed, 16 insertions(+), 16 deletions(-)
Title: Visible Vowels: Visualization of Vowel Variation
Description: Visualizes vowel variation in f0, F1, F2, F3 and duration.
Author: Wilbert Heeringa, Hans Van de Velde
Maintainer: Wilbert Heeringa <wjheeringa@gmail.com>
Diff between visvow versions 0.2.0 dated 2018-10-03 and 0.3.0 dated 2018-11-05
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- R/visvow.R | 7 ++++--- build/partial.rdb |binary inst/CITATION | 4 ++-- 5 files changed, 16 insertions(+), 15 deletions(-)
Title: Improved Predictors
Description: Improved predictive models by indirect classification and
bagging for classification, regression and survival problems
as well as resampling based estimators of prediction error.
Author: Andrea Peters [aut],
Torsten Hothorn [aut, cre],
Brian D. Ripley [ctb],
Terry Therneau [ctb],
Beth Atkinson [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between ipred versions 0.9-7 dated 2018-08-14 and 0.9-8 dated 2018-11-05
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/NEWS | 4 ++++ inst/doc/ipred-examples.pdf |binary tests/Examples/ipred-Ex.Rout.save | 18 +++++++++--------- 5 files changed, 21 insertions(+), 17 deletions(-)
Title: JavaScript Charts Tool
Description: Provides an R interface for using 'AmCharts' Library. Based on
'htmlwidgets', it provides a global architecture to generate 'JavaScript' source
code for charts. Most of classes in the library have their equivalent in R
with S4 classes; for those classes, not all properties have been referenced but
can easily be added in the constructors. Complex properties (e.g. 'JavaScript'
object) can be passed as named list. See examples at <http://datastorm-
open.github.io/introduction_ramcharts/> and <http://www.amcharts.com/> for
more information about the library. The package includes the free version
of 'AmCharts' Library. Its only limitation is a small link to the web site
displayed on your charts. If you enjoy this library, do not hesitate to refer
to this page <http://www.amcharts.com/online-store/> to purchase a licence,
and thus support its creators and get a period of Priority Support. See also
<http://www.amcharts.com/about/> for more information about 'AmCharts' company.
Author: Benoit Thieurmel [aut, cre],
Antanas Marcelionis [aut, cph] ('AmCharts' library in th directory
htmlwidgets/lib/amcharts, refer to http://www.amcharts.com/),
Jeffery Petit [aut, ctb],
Elena Salette [aut, ctb],
Titouan Robert [aut, ctb]
Maintainer: Benoit Thieurmel <benoit.thieurmel@datastorm.fr>
Diff between rAmCharts versions 2.1.8 dated 2018-06-21 and 2.1.9 dated 2018-11-05
DESCRIPTION | 8 +- MD5 | 11 +-- R/chart_amTimeSeries.R | 12 ++- R/shiny_modules_timeSeries.R | 126 +++++++++++++++++++------------------ inst/htmlwidgets/ramcharts_base.js | 2 inst/tests/tests_ts.R |only man/rAmCharts-shinymodules-ts.Rd | 5 - 7 files changed, 89 insertions(+), 75 deletions(-)
Title: Custom Inputs Widgets for Shiny
Description: Some custom inputs widgets to use in Shiny applications, like a toggle switch to replace checkboxes. And other components to pimp your apps.
Author: Victor Perrier [aut, cre],
Fanny Meyer [aut],
David Granjon [aut] (jQuery Knob shiny interface & sliders appearance),
SnapAppointments [cph] (bootstrap-select),
Mattia Larentis [ctb, cph] (Bootstrap Switch),
Emanuele Marchi [ctb, cph] (Bootstrap Switch),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Flatlogic [cph] (Awesome Bootstrap Checkbox),
mouse0270 [ctb, cph] (Material Design Switch),
Tristan Edwards [ctb, cph] (SweetAlert),
Fabian Lindfors [ctb, cph] (multi.js),
Anthony Terrien [ctb, cph] (jQuery Knob),
Daniel Eden [ctb, cph] (animate.css),
Ganapati V S [ctb, cph] (bttn.css),
Brian Grinstead [ctb, cph] (Spectrum),
Lokesh Rajendran [ctb, cph] (pretty-checkbox),
Leon Gersen [ctb, cph] (wnumb & noUiSlider),
Timofey Marochkin [ctb, cph] (air-datepicker),
Tobias Ahlin [ctb, cph] (CSS spin)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between shinyWidgets versions 0.4.3 dated 2018-05-30 and 0.4.4 dated 2018-11-05
shinyWidgets-0.4.3/shinyWidgets/inst/www/selectPicker/LICENSE.txt |only shinyWidgets-0.4.4/shinyWidgets/DESCRIPTION | 22 shinyWidgets-0.4.4/shinyWidgets/LICENSE | 8 shinyWidgets-0.4.4/shinyWidgets/MD5 | 227 ++++++---- shinyWidgets-0.4.4/shinyWidgets/NAMESPACE | 8 shinyWidgets-0.4.4/shinyWidgets/NEWS.md | 18 shinyWidgets-0.4.4/shinyWidgets/R/attachShinyWidgetsDep.R | 17 shinyWidgets-0.4.4/shinyWidgets/R/input-actiongroupbuttons.R | 59 +- shinyWidgets-0.4.4/shinyWidgets/R/input-airDatepicker.R | 43 + shinyWidgets-0.4.4/shinyWidgets/R/input-checkboxgroupbuttons.R | 8 shinyWidgets-0.4.4/shinyWidgets/R/input-dropdown.R | 38 - shinyWidgets-0.4.4/shinyWidgets/R/input-knob.R | 15 shinyWidgets-0.4.4/shinyWidgets/R/input-multi.R | 90 +++ shinyWidgets-0.4.4/shinyWidgets/R/input-noUiSlider.R | 5 shinyWidgets-0.4.4/shinyWidgets/R/input-radiogroupbuttons.R | 13 shinyWidgets-0.4.4/shinyWidgets/R/input-selectpicker.R | 20 shinyWidgets-0.4.4/shinyWidgets/R/input-sliderText.R | 2 shinyWidgets-0.4.4/shinyWidgets/R/input-spectrum.R | 14 shinyWidgets-0.4.4/shinyWidgets/R/input-switch.R | 2 shinyWidgets-0.4.4/shinyWidgets/R/module-pickerGroup.R | 10 shinyWidgets-0.4.4/shinyWidgets/R/module-selectizeGroup.R | 110 +++- shinyWidgets-0.4.4/shinyWidgets/R/onLoad.R | 2 shinyWidgets-0.4.4/shinyWidgets/R/pickerOptions.R |only shinyWidgets-0.4.4/shinyWidgets/R/progressBars.R | 33 + shinyWidgets-0.4.4/shinyWidgets/R/setShadow.R |only shinyWidgets-0.4.4/shinyWidgets/R/sw-dropdown.R | 20 shinyWidgets-0.4.4/shinyWidgets/R/useShinydashboard.R | 1 shinyWidgets-0.4.4/shinyWidgets/R/useShinydashboardPlus.R | 21 shinyWidgets-0.4.4/shinyWidgets/R/vertical-tab.R |only shinyWidgets-0.4.4/shinyWidgets/README.md | 1 shinyWidgets-0.4.4/shinyWidgets/inst/examples/multi/test-update.R | 50 +- shinyWidgets-0.4.4/shinyWidgets/inst/www/air-datepicker/datepicker-bindings.js | 74 ++- shinyWidgets-0.4.4/shinyWidgets/inst/www/air-datepicker/datepicker.min.css | 2 shinyWidgets-0.4.4/shinyWidgets/inst/www/dropdown/dropdown-click.js | 71 ++- shinyWidgets-0.4.4/shinyWidgets/inst/www/jquery-knob/knob-input-binding.js | 23 - shinyWidgets-0.4.4/shinyWidgets/inst/www/multi/multi-bindings.js | 8 shinyWidgets-0.4.4/shinyWidgets/inst/www/multi/multi.min.js | 4 shinyWidgets-0.4.4/shinyWidgets/inst/www/nouislider/nouislider-bindings.js | 22 shinyWidgets-0.4.4/shinyWidgets/inst/www/progressBars/progressBars-bindings.js | 9 shinyWidgets-0.4.4/shinyWidgets/inst/www/selectPicker/LICENSE |only shinyWidgets-0.4.4/shinyWidgets/inst/www/selectPicker/css/bootstrap-select.min.css | 8 shinyWidgets-0.4.4/shinyWidgets/inst/www/selectPicker/js/bootstrap-select.min.js | 16 shinyWidgets-0.4.4/shinyWidgets/inst/www/selectPicker/js/i18n |only shinyWidgets-0.4.4/shinyWidgets/inst/www/shinyWidgets-bindings.min.js | 2 shinyWidgets-0.4.4/shinyWidgets/inst/www/sliderText/sliderTextInput-bindings.js | 15 shinyWidgets-0.4.4/shinyWidgets/inst/www/spectrum/spectrum-bindings.js | 28 + shinyWidgets-0.4.4/shinyWidgets/inst/www/spectrum/sw-spectrum.css | 23 - shinyWidgets-0.4.4/shinyWidgets/inst/www/sw-dropdown/sw-dropdown.js | 1 shinyWidgets-0.4.4/shinyWidgets/inst/www/vertical-tab-panel |only shinyWidgets-0.4.4/shinyWidgets/man/actionGroupButtons.Rd | 4 shinyWidgets-0.4.4/shinyWidgets/man/airDatepicker.Rd | 19 shinyWidgets-0.4.4/shinyWidgets/man/animateOptions.Rd | 3 shinyWidgets-0.4.4/shinyWidgets/man/circleButton.Rd | 4 shinyWidgets-0.4.4/shinyWidgets/man/confirmSweetAlert.Rd | 4 shinyWidgets-0.4.4/shinyWidgets/man/dropdown.Rd | 2 shinyWidgets-0.4.4/shinyWidgets/man/dropdownButton.Rd | 21 shinyWidgets-0.4.4/shinyWidgets/man/inputSweetAlert.Rd | 4 shinyWidgets-0.4.4/shinyWidgets/man/knobInput.Rd | 16 shinyWidgets-0.4.4/shinyWidgets/man/materialSwitch.Rd | 4 shinyWidgets-0.4.4/shinyWidgets/man/multiInput.Rd | 16 shinyWidgets-0.4.4/shinyWidgets/man/noUiSliderInput.Rd | 7 shinyWidgets-0.4.4/shinyWidgets/man/pickerGroup-module.Rd | 10 shinyWidgets-0.4.4/shinyWidgets/man/pickerInput.Rd | 13 shinyWidgets-0.4.4/shinyWidgets/man/pickerOptions.Rd |only shinyWidgets-0.4.4/shinyWidgets/man/prettyCheckbox.Rd | 6 shinyWidgets-0.4.4/shinyWidgets/man/prettyToggle.Rd | 10 shinyWidgets-0.4.4/shinyWidgets/man/progress-bar.Rd | 11 shinyWidgets-0.4.4/shinyWidgets/man/progressSweetAlert.Rd | 5 shinyWidgets-0.4.4/shinyWidgets/man/radioGroupButtons.Rd | 9 shinyWidgets-0.4.4/shinyWidgets/man/selectizeGroup-module.Rd | 13 shinyWidgets-0.4.4/shinyWidgets/man/setBackgroundColor.Rd | 4 shinyWidgets-0.4.4/shinyWidgets/man/setShadow.Rd |only shinyWidgets-0.4.4/shinyWidgets/man/sliderTextInput.Rd | 14 shinyWidgets-0.4.4/shinyWidgets/man/spectrumInput.Rd | 9 shinyWidgets-0.4.4/shinyWidgets/man/switchInput.Rd | 6 shinyWidgets-0.4.4/shinyWidgets/man/toggleDropdownButton.Rd | 8 shinyWidgets-0.4.4/shinyWidgets/man/tooltipOptions.Rd | 2 shinyWidgets-0.4.4/shinyWidgets/man/updateAirDateInput.Rd | 4 shinyWidgets-0.4.4/shinyWidgets/man/updateAwesomeCheckboxGroup.Rd | 5 shinyWidgets-0.4.4/shinyWidgets/man/updateAwesomeRadio.Rd | 3 shinyWidgets-0.4.4/shinyWidgets/man/updateCheckboxGroupButtons.Rd | 7 shinyWidgets-0.4.4/shinyWidgets/man/updateKnobInput.Rd | 5 shinyWidgets-0.4.4/shinyWidgets/man/updateMultiInput.Rd |only shinyWidgets-0.4.4/shinyWidgets/man/updatePickerInput.Rd | 3 shinyWidgets-0.4.4/shinyWidgets/man/updatePrettyCheckboxGroup.Rd | 6 shinyWidgets-0.4.4/shinyWidgets/man/updatePrettyRadioButtons.Rd | 6 shinyWidgets-0.4.4/shinyWidgets/man/updateSwitchInput.Rd | 4 shinyWidgets-0.4.4/shinyWidgets/man/updateVerticalTabsetPanel.Rd |only shinyWidgets-0.4.4/shinyWidgets/man/useShinydashboard.Rd | 1 shinyWidgets-0.4.4/shinyWidgets/man/useShinydashboardPlus.Rd | 21 shinyWidgets-0.4.4/shinyWidgets/man/vertical-tab.Rd |only shinyWidgets-0.4.4/shinyWidgets/tests/testthat/test-airdatepicker.R |only shinyWidgets-0.4.4/shinyWidgets/tests/testthat/test-dropdownButton.R | 2 shinyWidgets-0.4.4/shinyWidgets/tests/testthat/test-modules.R | 4 shinyWidgets-0.4.4/shinyWidgets/tests/testthat/test-spinners.R |only shinyWidgets-0.4.4/shinyWidgets/tests/testthat/test-updateAwesomeCheckbox.R | 1 shinyWidgets-0.4.4/shinyWidgets/tests/testthat/test-updateAwesomeCheckboxGroup.R | 2 shinyWidgets-0.4.4/shinyWidgets/tests/testthat/test-updateAwesomeRadio.R | 2 shinyWidgets-0.4.4/shinyWidgets/tests/testthat/test-updateCheckboxGroupButtons.R | 23 + shinyWidgets-0.4.4/shinyWidgets/tests/testthat/test-updateMaterialSwitch.R | 1 shinyWidgets-0.4.4/shinyWidgets/tests/testthat/test-updateRadioGroupButtons.R | 23 + shinyWidgets-0.4.4/shinyWidgets/tests/testthat/test-updateSwitchInput.R | 1 shinyWidgets-0.4.4/shinyWidgets/tests/testthat/test-utilityinputs.R | 4 103 files changed, 1019 insertions(+), 496 deletions(-)
Title: Instrumental Variables
Description: Contains tools for instrumental variables estimation. Currently, non-parametric bounds, two-stage estimation and G-estimation are implemented. Balke, A. and Pearl, J. (1997) <doi:10.2307/2965583>, Vansteelandt S., Bowden J., Babanezhad M., Goetghebeur E. (2011) <doi:10.1214/11-STS360>.
Author: Arvid Sjolander, Elisabeth Dahlqwist, Torben Martinussen
Maintainer: Arvid Sjolander <arvid.sjolander@ki.se>
Diff between ivtools versions 1.0.0 dated 2018-04-24 and 2.0.0 dated 2018-11-05
ivtools-1.0.0/ivtools/man/bounds.Rd |only ivtools-1.0.0/ivtools/man/print.summary.tsls.Rd |only ivtools-1.0.0/ivtools/man/summary.tsls.Rd |only ivtools-1.0.0/ivtools/man/tsls.Rd |only ivtools-2.0.0/ivtools/DESCRIPTION | 17 ivtools-2.0.0/ivtools/MD5 | 24 ivtools-2.0.0/ivtools/NAMESPACE | 25 ivtools-2.0.0/ivtools/R/RcppExports.R |only ivtools-2.0.0/ivtools/R/sourcecode.R | 1028 ++++++++++++++++++++--- ivtools-2.0.0/ivtools/man/ah.Rd |only ivtools-2.0.0/ivtools/man/confint.ivmod.Rd |only ivtools-2.0.0/ivtools/man/estfunSums.Rd |only ivtools-2.0.0/ivtools/man/ivah.Rd |only ivtools-2.0.0/ivtools/man/ivbounds.Rd |only ivtools-2.0.0/ivtools/man/ivcoxph.Rd |only ivtools-2.0.0/ivtools/man/ivglm.Rd |only ivtools-2.0.0/ivtools/man/plot.ivah.Rd |only ivtools-2.0.0/ivtools/man/print.ivmod.Rd |only ivtools-2.0.0/ivtools/man/print.summary.ivmod.Rd |only ivtools-2.0.0/ivtools/man/summary.ivmod.Rd |only ivtools-2.0.0/ivtools/src |only 21 files changed, 957 insertions(+), 137 deletions(-)
Title: Recursive Partitioning for Structural Equation Models
Description: SEM Trees and SEM Forests -- an extension of model-based decision
trees and forests to Structural Equation Models (SEM). SEM trees hierarchically
split empirical data into homogeneous groups sharing similar data patterns
with respect to a SEM by recursively selecting optimal predictors of these
differences. SEM forests are an extension of SEM trees. They are ensembles of
SEM trees each built on a random sample of the original data. By aggregating
over a forest, we obtain measures of variable importance that are more robust
than measures from single trees.
Author: Andreas M. Brandmaier [aut, cre],
John J. Prindle [aut]
Maintainer: Andreas M. Brandmaier <andy@brandmaier.de>
Diff between semtree versions 0.9.12 dated 2018-02-13 and 0.9.13 dated 2018-11-05
DESCRIPTION | 10 +++++----- MD5 | 15 ++++++++------- NEWS.md | 5 +++++ R/conditional.R |only R/fairSplit.R | 2 +- R/fitSubmodels.R | 3 +++ R/plot.semtree.R | 2 +- R/varimp.R | 23 ++++++++++++++++++++--- man/varimp.Rd | 5 ++++- 9 files changed, 47 insertions(+), 18 deletions(-)
Title: A Method to Download Department of Education College Scorecard
Data
Description: A method to download Department of Education College
Scorecard data using the public API
<https://collegescorecard.ed.gov/data/documentation/>. It is based on
the 'dplyr' model of piped commands to select and filter data in a
single chained function call. An API key from the U.S. Department of
Education is required.
Author: Benjamin Skinner [aut, cre] (<https://orcid.org/0000-0002-0337-7415>)
Maintainer: Benjamin Skinner <btskinner@virginia.edu>
Diff between rscorecard versions 0.11.0 dated 2018-10-30 and 0.11.1 dated 2018-11-05
DESCRIPTION | 6 +++--- MD5 | 9 +++++---- NEWS.md | 11 +++++++++++ R/get.R | 30 ++++-------------------------- R/utility_functions.R | 30 ++++++++++++++++++++++++++++++ tests/testthat/test-regex.R |only 6 files changed, 53 insertions(+), 33 deletions(-)
Title: Generalized Linear Mixed Models using Adaptive Gaussian
Quadrature
Description: Fits generalized linear mixed models for a single grouping factor under
maximum likelihood approximating the integrals over the random effects with an
adaptive Gaussian quadrature rule; Jose C. Pinheiro and Douglas M. Bates (1995)
<doi:10.1080/10618600.1995.10474663>.
Author: Dimitris Rizopoulos [aut, cre]
(<https://orcid.org/0000-0001-9397-0900>)
Maintainer: Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>
Diff between GLMMadaptive versions 0.3-0 dated 2018-09-27 and 0.4-0 dated 2018-11-05
DESCRIPTION | 11 MD5 | 53 +-- NAMESPACE | 5 NEWS.md | 13 R/Fit_Funs.R | 126 ++++++- R/Functions.R | 20 + R/methods.R | 427 ++++++++++++++++++++++---- R/mixed_fit.R | 21 + R/mixed_model.R | 12 README.md | 8 build/vignette.rds |binary inst/doc/Custom_Models.html | 8 inst/doc/Dynamic_Predictions.R |only inst/doc/Dynamic_Predictions.Rmd |only inst/doc/Dynamic_Predictions.html |only inst/doc/GLMMadaptive_basics.html | 24 - inst/doc/Methods_MixMod.html | 44 +- inst/doc/Multiple_Comparisons.R | 13 inst/doc/Multiple_Comparisons.Rmd | 30 + inst/doc/Multiple_Comparisons.html | 75 +++- inst/doc/ZeroInflated_and_TwoPart_Models.R | 4 inst/doc/ZeroInflated_and_TwoPart_Models.Rmd | 4 inst/doc/ZeroInflated_and_TwoPart_Models.html | 10 man/GLMMadaptive.Rd | 4 man/extra_fams.Rd | 10 man/methods.Rd | 19 - man/scoring_rules.Rd |only vignettes/Dynamic_Predictions.Rmd |only vignettes/Multiple_Comparisons.Rmd | 30 + vignettes/ZeroInflated_and_TwoPart_Models.Rmd | 4 30 files changed, 778 insertions(+), 197 deletions(-)
Title: Dendrochronology Program Library in R
Description: Perform tree-ring analyses such as detrending, chronology
building, and cross dating. Read and write standard file formats
used in dendrochronology.
Author: Andy Bunn [aut, cph, cre, trl],
Mikko Korpela [aut, cph, trl],
Franco Biondi [aut, cph],
Filipe Campelo [aut, cph],
Pierre Mérian [aut, cph],
Fares Qeadan [aut, cph],
Christian Zang [aut, cph],
Allan Buras [ctb],
Jacob Cecile [ctb],
Manfred Mudelsee [ctb],
Michael Schulz [ctb],
Darwin Pucha-Cofrep [aut, cph],
Jakob Wernicke [aut, cph]
Maintainer: Andy Bunn <andy.bunn@wwu.edu>
Diff between dplR versions 1.6.8 dated 2018-05-23 and 1.6.9 dated 2018-11-05
ChangeLog | 57 +++++++++ DESCRIPTION | 10 - MD5 | 66 +++++----- NAMESPACE | 5 R/as.rwl.R |only R/bai.in.R | 6 R/bai.out.R | 6 R/crn.plot.R | 5 R/detrend.R | 37 +++--- R/detrend.series.R | 259 +++++++++++++++++++++++++++++++++++++------ R/pass.filt.R |only R/powt.R | 4 R/rwl.stats.R | 4 R/spag.plot.R | 3 R/sss.R |only inst/doc/chron-dplR.R | 28 ++-- inst/doc/chron-dplR.pdf |binary inst/doc/intro-dplR.pdf |binary inst/doc/timeseries-dplR.pdf |binary inst/doc/xdate-dplR.pdf |binary man/as.rwl.Rd |only man/crn.plot.Rd | 5 man/detrend.Rd | 38 ++++-- man/detrend.series.Rd | 93 ++++++++++----- man/pass.filt.Rd |only man/plotRings.Rd | 8 - man/powt.Rd | 7 - man/redfit.Rd | 4 man/rwi.stats.running.Rd | 50 -------- man/rwl.stats.Rd | 8 - man/skel.plot.Rd | 6 man/spag.plot.Rd | 2 man/sss.Rd |only man/wavelet.plot.Rd | 19 +-- man/xskel.ccf.plot.Rd | 2 man/xskel.plot.Rd | 2 vignettes/chron-dplR.Rnw | 30 ++-- 37 files changed, 530 insertions(+), 234 deletions(-)
Title: Computational Graphs
Description: Allows to create, evaluate, and differentiate computational graphs in R. A computational graph is a graph representation of a multivariate function decomposed by its (elementary) operations. Nodes in the graph represent arrays while edges represent dependencies among the arrays. An advantage of expressing a function as a computational graph is that this enables to differentiate the function by automatic differentiation. The 'cgraph' package supports various operations including basic arithmetic, trigonometry operations, and linear algebra operations. It differentiates computational graphs by reverse automatic differentiation. The flexible architecture of the package makes it applicable to solve a variety of problems including local sensitivity analysis, gradient-based optimization, and machine learning.
Author: Ron Triepels
Maintainer: Ron Triepels <dev@cgraph.org>
Diff between cgraph versions 3.0.0 dated 2018-11-01 and 3.0.1 dated 2018-11-05
DESCRIPTION | 8 +-- MD5 | 8 +-- NEWS.md | 7 +++ R/library.R | 105 +++++++++++++++++++++++++--------------------- man/cg_default_library.Rd | 2 5 files changed, 74 insertions(+), 56 deletions(-)
Title: An R Port of the 'ImageJ' Plugin 'Auto Threshold'
Description: Algorithms for automatically finding appropriate thresholds for
numerical data, with special functions for thresholding images. Provides the
'ImageJ' 'Auto Threshold' plugin functionality to R users. See
<http://imagej.net/Auto_Threshold> and Landini et al. (2017)
<DOI:10.1111/jmi.12474>.
Author: Rory Nolan [aut, cre, trl] (<https://orcid.org/0000-0002-5239-4043>),
Luis Alvarez [ctb] (<https://orcid.org/0000-0003-1316-1906>),
Sergi Padilla-Parra [ctb, ths]
(<https://orcid.org/0000-0002-8010-9481>),
Gabriel Landini [ctb, cph] (<https://orcid.org/0000-0002-9689-0989>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between autothresholdr versions 1.2.1 dated 2018-07-09 and 1.3.0 dated 2018-11-05
autothresholdr-1.2.1/autothresholdr/inst/doc/autothresholdr.R |only autothresholdr-1.2.1/autothresholdr/inst/doc/autothresholdr.Rmd |only autothresholdr-1.2.1/autothresholdr/inst/doc/autothresholdr.html |only autothresholdr-1.2.1/autothresholdr/vignettes/autothresholdr.Rmd |only autothresholdr-1.3.0/autothresholdr/DESCRIPTION | 23 + autothresholdr-1.3.0/autothresholdr/MD5 | 45 +-- autothresholdr-1.3.0/autothresholdr/NAMESPACE | 1 autothresholdr-1.3.0/autothresholdr/NEWS.md | 43 ++- autothresholdr-1.3.0/autothresholdr/R/autothresholdr.R | 1 autothresholdr-1.3.0/autothresholdr/R/stack_thresh.R | 136 +++++++--- autothresholdr-1.3.0/autothresholdr/R/thresh.R | 40 ++ autothresholdr-1.3.0/autothresholdr/R/utils.R | 117 ++++++++ autothresholdr-1.3.0/autothresholdr/build/vignette.rds |binary autothresholdr-1.3.0/autothresholdr/inst/doc/finding-thresholds.R |only autothresholdr-1.3.0/autothresholdr/inst/doc/finding-thresholds.Rmd |only autothresholdr-1.3.0/autothresholdr/inst/doc/finding-thresholds.html |only autothresholdr-1.3.0/autothresholdr/inst/doc/thresholding-image-stacks.R |only autothresholdr-1.3.0/autothresholdr/inst/doc/thresholding-image-stacks.Rmd |only autothresholdr-1.3.0/autothresholdr/inst/doc/thresholding-image-stacks.html |only autothresholdr-1.3.0/autothresholdr/inst/doc/thresholding-images.R |only autothresholdr-1.3.0/autothresholdr/inst/doc/thresholding-images.Rmd |only autothresholdr-1.3.0/autothresholdr/inst/doc/thresholding-images.html |only autothresholdr-1.3.0/autothresholdr/inst/include/autothresholdr_RcppExports.h | 8 autothresholdr-1.3.0/autothresholdr/man/auto_thresh.Rd | 12 autothresholdr-1.3.0/autothresholdr/man/figures |only autothresholdr-1.3.0/autothresholdr/src/RcppExports.cpp | 16 + autothresholdr-1.3.0/autothresholdr/tests/testthat/test_stack_thresh.R | 10 autothresholdr-1.3.0/autothresholdr/tests/testthat/test_thresh.R | 46 ++- autothresholdr-1.3.0/autothresholdr/tests/testthat/test_utils.R | 19 + autothresholdr-1.3.0/autothresholdr/vignettes/finding-thresholds.Rmd |only autothresholdr-1.3.0/autothresholdr/vignettes/thresholding-image-stacks.Rmd |only autothresholdr-1.3.0/autothresholdr/vignettes/thresholding-images.Rmd |only 32 files changed, 410 insertions(+), 107 deletions(-)
More information about autothresholdr at CRAN
Permanent link
Title: Dependencies for the 'jamovi' Framework
Description: A framework for creating rich interactive analyses for the jamovi
platform (see <https://www.jamovi.org> for more information).
Author: Jonathon Love
Maintainer: Jonathon Love <jon@thon.cc>
Diff between jmvcore versions 0.9.4 dated 2018-09-17 and 0.9.5 dated 2018-11-05
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NAMESPACE | 1 + R/analysis.R | 32 +++++++++++++++++++++++++++----- R/array.R | 1 + R/image.R | 25 +++++++++++++------------ R/results.R | 6 ++++-- R/themes.R | 15 +++++++++++++++ 8 files changed, 72 insertions(+), 30 deletions(-)
Title: Calculating Solar Radiation and Related Variables Based on
Location, Time and Topographical Conditions
Description: For surface energy models and estimation of solar positions and components with varying topography, time and locations. The functions calculate solar top-of-atmosphere, open, diffuse and direct components, atmospheric transmittance and diffuse factors, day length, sunrise and sunset, solar azimuth, zenith, altitude, incidence, and hour angles, earth declination angle, equation of time, and solar constant. Details about the methods and equations are explained in Seyednasrollah, Bijan, Mukesh Kumar, and Timothy E. Link. 'On the role of vegetation density on net snow cover radiation at the forest floor.' Journal of Geophysical Research: Atmospheres 118.15 (2013): 8359-8374, <doi:10.1002/jgrd.50575>.
Author: Bijan Seyednasrollah
Maintainer: Bijan Seyednasrollah <bijan.s.nasr@gmail.com>
Diff between solrad versions 0.99.0 dated 2018-05-22 and 1.0.0 dated 2018-11-05
DESCRIPTION | 13 - LICENSE | 663 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++- MD5 | 8 NEWS.md |only README.md |only tests |only 6 files changed, 674 insertions(+), 10 deletions(-)
Title: Tracking the Progress of Mc*pply with Progress Bar
Description: A light-weight package helps you track and visualize
the progress of parallel version of vectorized R functions (mc*apply).
Parallelization (mc.core > 1) works only on *nix (Linux, Unix such as macOS) system due to
the lack of fork() functionality, which is essential for mc*apply, on Windows.
Author: Kevin Kuang (aut), Francesco Napolitano (ctb)
Maintainer: Kevin kuang <kvn.kuang@mail.utoronto.ca>
Diff between pbmcapply versions 1.2.5 dated 2018-05-19 and 1.3.0 dated 2018-11-05
DESCRIPTION | 6 - MD5 | 14 +-- R/pbmclapply.R | 202 +++++++++++++++++++++++++----------------------- R/pbmcmapply.R | 208 +++++++++++++++++++++++++------------------------- R/txtProgressBarETA.R | 40 +++++++-- R/utils.R | 2 man/pbmclapply.Rd | 9 +- man/pbmcmapply.Rd | 8 + 8 files changed, 268 insertions(+), 221 deletions(-)