Mon, 05 Nov 2018

Package webmockr updated to version 0.2.9 with previous version 0.2.8 dated 2018-10-19

Title: Stubbing and Setting Expectations on 'HTTP' Requests
Description: Stubbing and setting expectations on 'HTTP' requests. Includes tools for stubbing 'HTTP' requests, including expected request conditions and response conditions. Match on 'HTTP' method, query parameters, request body, headers and more. Can be used for unit tests or outside of a testing context.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>), rOpenSci [fnd] (https://ropensci.org)
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>

Diff between webmockr versions 0.2.8 dated 2018-10-19 and 0.2.9 dated 2018-11-05

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Package Thermimage updated to version 3.1.2 with previous version 3.1.1 dated 2018-09-13

Title: Thermal Image Analysis
Description: A collection of functions and routines for inputting thermal image video files, plotting and converting binary raw data into estimates of temperature. First published 2015-03-26. Written primarily for research purposes in biological applications of thermal images. v1 included the base calculations for converting thermal image binary values to temperatures. v2 included additional equations for providing heat transfer calculations and an import function for thermal image files (v2.2.3 fixed error importing thermal image to windows OS). v3. Added numerous functions for converting thermal image, videos, rewriting and exporting. v3.1. Added new functions to convert files.
Author: Glenn J. Tattersall
Maintainer: Glenn J. Tattersall <gtatters@brocku.ca>

Diff between Thermimage versions 3.1.1 dated 2018-09-13 and 3.1.2 dated 2018-11-05

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Package rcmdcheck updated to version 1.3.1 with previous version 1.3.0 dated 2018-09-19

Title: Run 'R CMD check' from 'R' and Capture Results
Description: Run 'R CMD check' from 'R' programmatically, and capture the results of the individual checks.
Author: Gábor Csárdi
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>

Diff between rcmdcheck versions 1.3.0 dated 2018-09-19 and 1.3.1 dated 2018-11-05

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Package yardstick updated to version 0.0.2 with previous version 0.0.1 dated 2017-11-12

Title: Tidy Characterizations of Model Performance
Description: Tidy tools for quantifying how well model fits to a data set such as confusion matrices, class probability curve summaries, and regression metrics (e.g., RMSE).
Author: Max Kuhn [aut, cre], Davis Vaughan [aut], RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>

Diff between yardstick versions 0.0.1 dated 2017-11-12 and 0.0.2 dated 2018-11-05

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More information about yardstick at CRAN
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Package RcmdrPlugin.orloca updated to version 4.7 with previous version 4.6 dated 2018-07-06

Title: A GUI for Planar Location Problems
Description: A GUI for the orloca package is provided as a Rcmdr plug-in. The package deals with planar location problems.
Author: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Maintainer: Manuel Munoz-Marquez <manuel.munoz@uca.es>

Diff between RcmdrPlugin.orloca versions 4.6 dated 2018-07-06 and 4.7 dated 2018-11-05

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Package DT updated to version 0.5 with previous version 0.4 dated 2018-01-30

Title: A Wrapper of the JavaScript Library 'DataTables'
Description: Data objects in R can be rendered as HTML tables using the JavaScript library 'DataTables' (typically via R Markdown or Shiny). The 'DataTables' library has been included in this R package. The package name 'DT' is an abbreviation of 'DataTables'.
Author: Yihui Xie [aut, cre], Joe Cheng [aut], Xianying Tan [aut], JJ Allaire [ctb], Maximilian Girlich [ctb], Greg Freedman Ellis [ctb], Johannes Rauh [ctb], jQuery contributors [ctb, cph] (jQuery in htmlwidgets/lib), SpryMedia Limited [ctb, cph] (DataTables in htmlwidgets/lib), Brian Reavis [ctb, cph] (selectize.js in htmlwidgets/lib), Leon Gersen [ctb, cph] (noUiSlider in htmlwidgets/lib), Bartek Szopka [ctb, cph] (jquery.highlight.js in htmlwidgets/lib), RStudio Inc [cph]
Maintainer: Yihui Xie <xie@yihui.name>

Diff between DT versions 0.4 dated 2018-01-30 and 0.5 dated 2018-11-05

 DESCRIPTION                                                                           |   25 
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 NEWS.md                                                                               |   42 
 R/datatables.R                                                                        |   25 
 R/format.R                                                                            |   43 
 R/shiny.R                                                                             |  124 
 R/utils.R                                                                             |    8 
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More information about DT at CRAN
Permanent link

Package beanz updated to version 2.4 with previous version 2.3 dated 2018-06-13

Title: Bayesian Analysis of Heterogeneous Treatment Effect
Description: It is vital to assess the heterogeneity of treatment effects (HTE) when making health care decisions for an individual patient or a group of patients. Nevertheless, it remains challenging to evaluate HTE based on information collected from clinical studies that are often designed and conducted to evaluate the efficacy of a treatment for the overall population. The Bayesian framework offers a principled and flexible approach to estimate and compare treatment effects across subgroups of patients defined by their characteristics. This package allows users to explore a wide range of Bayesian HTE analysis models, and produce posterior inferences about HTE. See Wang et al. (2018) <DOI:10.18637/jss.v085.i07> for further details.
Author: Chenguang Wang [aut, cre], Ravi Varadhan [aut], Trustees of Columbia University [cph] (tools/make_cpp.R, R/stanmodels.R)
Maintainer: Chenguang Wang <cwang68@jhmi.edu>

Diff between beanz versions 2.3 dated 2018-06-13 and 2.4 dated 2018-11-05

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Package openair updated to version 2.6-0 with previous version 2.5-0 dated 2018-09-10

Title: Tools for the Analysis of Air Pollution Data
Description: Tools to analyse, interpret and understand air pollution data. Data are typically hourly time series and both monitoring data and dispersion model output can be analysed. Many functions can also be applied to other data, including meteorological and traffic data.
Author: David Carslaw [aut, cre], Karl Ropkins [aut]
Maintainer: David Carslaw <david.carslaw@york.ac.uk>

Diff between openair versions 2.5-0 dated 2018-09-10 and 2.6-0 dated 2018-11-05

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Package TDAstats updated to version 0.4.0 with previous version 0.3.0 dated 2018-08-05

Title: Pipeline for Topological Data Analysis
Description: A comprehensive toolset for any useR conducting topological data analysis, specifically via the calculation of persistent homology in a Vietoris-Rips complex. The tools this package currently provides can be conveniently split into three main sections: (1) calculating persistent homology; (2) conducting statistical inference on persistent homology calculations; (3) visualizing persistent homology and statistical inference. The published form of TDAstats can be found in Wadhwa et al. (2018) <doi:10.21105/joss.00860>. For a general background on computing persistent homology for topological data analysis, see Otter et al. (2017) <doi:10.1140/epjds/s13688-017-0109-5>. To learn more about how the permutation test is used for nonparametric statistical inference in topological data analysis, read Robinson & Turner (2017) <doi:10.1007/s41468-017-0008-7>. To learn more about how TDAstats calculates persistent homology, you can visit the GitHub repository for Ripser, the software that works behind the scenes at <https://github.com/Ripser/ripser>. This package has been published as Wadhwa et al. (2018) <doi:10.21105/joss.00860>.
Author: Raoul Wadhwa [aut, cre], Andrew Dhawan [aut], Drew Williamson [aut], Jacob Scott [aut]
Maintainer: Raoul Wadhwa <raoulwadhwa@gmail.com>

Diff between TDAstats versions 0.3.0 dated 2018-08-05 and 0.4.0 dated 2018-11-05

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Package Rlabkey updated to version 2.2.4 with previous version 2.2.3 dated 2018-10-11

Title: Data Exchange Between R and 'LabKey' Server
Description: The 'LabKey' client library for R makes it easy for R users to load live data from a 'LabKey' Server, <http://www.labkey.com/>, into the R environment for analysis, provided users have permissions to read the data. It also enables R users to insert, update, and delete records stored on a 'LabKey' Server, provided they have appropriate permissions to do so.
Author: Peter Hussey
Maintainer: Cory Nathe <cnathe@labkey.com>

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Package reproducer updated to version 0.2.1 with previous version 0.2.0 dated 2018-11-03

Title: Reproduce Statistical Analyses and Meta-Analyses
Description: Includes data analysis functions (e.g., to calculate effect sizes and 95% Confidence Intervals (CI) on Standardised Effect Sizes (d) for ABBA cross-over repeated-measures experimental designs), data presentation functions (e.g., density curve overlaid on histogram), and the data sets analyzed in different research papers in software engineering (e.g., related to software defect prediction or multi-site experiment concerning the extent to which structured abstracts were clearer and more complete than conventional abstracts) to streamline reproducible research in software engineering.
Author: Lech Madeyski [cre, aut, ctb], Barbara Kitchenham [ctb] (Data and code contributor), Marian Jureczko [ctb] (Data contributor), David Budgen [ctb] (Data contributor), Pearl Brereton [ctb] (Data contributor), Jacky Keung [ctb] (Data contributor), Stuart Charters [ctb] (Data contributor), Shirley Gibbs [ctb] (Data contributor), Amnart Pohthong [ctb] (Data contributor)
Maintainer: Lech Madeyski <lech.madeyski@gmail.com>

Diff between reproducer versions 0.2.0 dated 2018-11-03 and 0.2.1 dated 2018-11-05

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Package metadynminer updated to version 0.1.3 with previous version 0.1.2 dated 2018-09-20

Title: Tools to Read, Analyze and Visualize Metadynamics HILLS Files from 'Plumed'
Description: Metadynamics is a state of the art biomolecular simulation technique. 'Plumed' Tribello, G.A. et al. (2014) <doi:10.1016/j.cpc.2013.09.018> program makes it possible to perform metadynamics using various simulation codes. The results of metadynamics done in 'Plumed' can be analyzed by 'metadynminer'. The package 'metadynminer' reads 1D and 2D metadynamics hills files from 'Plumed' package. It uses a fast algorithm by Hosek, P. and Spiwok, V. (2016) <doi:10.1016/j.cpc.2015.08.037> to calculate a free energy surface from hills. Minima can be located and plotted on the free energy surface. Transition states can be analyzed by Nudged Elastic Band method by Henkelman, G. and Jonsson, H. (2000) <doi:10.1063/1.1323224>. Free energy surfaces, minima and transition paths can be plotted to produce publication quality images.
Author: Vojtech Spiwok [aut, cre] (<https://orcid.org/0000-0001-8108-2033>)
Maintainer: Vojtech Spiwok <spiwokv@vscht.cz>

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Package garray updated to version 1.1.2 with previous version 1.1.1 dated 2018-11-04

Title: Generalized Array Arithmetic for Ragged Arrays with Named Margins
Description: Organize a so-called ragged array as generalized arrays, which is simply an array with sub-dimensions denoting the subdivision of dimensions (grouping of members within dimensions). By the margins (names of dimensions and sub-dimensions) in generalized arrays, operators and utility functions provided in this package automatically match the margins, doing map-reduce style parallel computation along margins. Generalized arrays are also cooperative to R's native functions that work on simple arrays.
Author: Qingsheng Huang
Maintainer: Qingsheng Huang <huangqqss@126.com>

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Package eulerr updated to version 5.0.0 with previous version 4.1.0 dated 2018-04-20

Title: Area-Proportional Euler and Venn Diagrams with Ellipses
Description: Generate area-proportional Euler diagrams using numerical optimization. An Euler diagram is a generalization of a Venn diagram, relaxing the criterion that all interactions need to be represented. Diagrams may be fit with ellipses and circles via a wide range of inputs and can be visualized in numerous ways.
Author: Johan Larsson [aut, cre] (<https://orcid.org/0000-0002-4029-5945>), A. Jonathan R. Godfrey [ctb], Peter Gustafsson [ctb], David H. Eberly [ctb] (geometric algorithms), Emanuel Huber [ctb] (root solver code)
Maintainer: Johan Larsson <mail@larssonjohan.com>

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Package dextergui updated to version 0.1.5 with previous version 0.1.4 dated 2018-07-17

Title: A Graphical User Interface for Dexter
Description: Classical Test and Item analysis, Item Response analysis and data management for educational and psychological tests.
Author: Jesse Koops, Eva de Schipper, Ivailo Partchev, Timo Bechger, Gunter Maris
Maintainer: jesse koops <jesse.koops@cito.nl>

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Package augSIMEX updated to version 3.1 with previous version 3.0 dated 2018-09-19

Title: Analysis of Data with Mixed Measurement Error and Misclassification in Covariates
Description: Implementation of the augmented Simulation-Extrapolation (SIMEX) algorithm proposed by Yi et al. (2015) <doi:10.1080/01621459.2014.922777> for analyzing the data with mixed measurement error and misclassification. The main function provides a similar summary output as that of glm() function. Both parametric and empirical SIMEX are considered in the package.
Author: Qihuang Zhang <qihuang.zhang@uwaterloo.ca>, Grace Y. Yi <yyi@uwaterloo.ca>
Maintainer: Qihuang Zhang <qihuang.zhang@uwaterloo.ca>

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Package rscala updated to version 3.2.4 with previous version 3.2.3 dated 2018-10-25

Title: Bridge Between 'R' and 'Scala' with Callbacks
Description: 'Scala' <http://www.scala-lang.org/> is embedded in 'R' and callbacks from 'Scala' to 'R' are available. Support is provided to write 'R' packages that access 'Scala'. After installation, please run 'rscala::scalaConfig()'.
Author: David B. Dahl [aut, cre]
Maintainer: David B. Dahl <dahl@stat.byu.edu>

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Package ipc updated to version 0.1.1 with previous version 0.1.0 dated 2018-09-17

Title: Tools for Message Passing Between Processes
Description: Provides tools for passing messages between R processes. Shiny Examples are provided showing how to perform useful tasks such as: updating reactive values from within a future, progress bars for long running async tasks, and interrupting async tasks based on user input.
Author: Ian E. Fellows
Maintainer: Ian E. Fellows <ian@fellstat.com>

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Package vtreat updated to version 1.3.2 with previous version 1.3.1 dated 2018-09-10

Title: A Statistically Sound 'data.frame' Processor/Conditioner
Description: A 'data.frame' processor/conditioner that prepares real-world data for predictive modeling in a statistically sound manner. 'vtreat' prepares variables so that data has fewer exceptional cases, making it easier to safely use models in production. Common problems 'vtreat' defends against: 'Inf', 'NA', too many categorical levels, rare categorical levels, and new categorical levels (levels seen during application, but not during training). Reference: "'vtreat': a data.frame Processor for Predictive Modeling", 'Zumel', 'Mount', 2016, DOI:10.5281/zenodo.1173314.
Author: John Mount [aut, cre], Nina Zumel [aut], Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>

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Package sessioninfo updated to version 1.1.1 with previous version 1.1.0 dated 2018-09-25

Title: R Session Information
Description: Query and print information about the current R session. It is similar to 'utils::sessionInfo()', but includes more information about packages, and where they were installed from.
Author: Gábor Csárdi, R core, Hadley Wickham, Winston Chang, Robert M Flight, Kirill Müller, Jim Hester
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>

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Package spant updated to version 0.12.0 with previous version 0.11.0 dated 2018-07-20

Title: MR Spectroscopy Analysis Tools
Description: Tools for reading, visualising and processing Magnetic Resonance Spectroscopy data.
Author: Martin Wilson [cre, aut], John Muschelli [ctb]
Maintainer: Martin Wilson <martin@pipegrep.co.uk>

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Package robmed updated to version 0.3.0 with previous version 0.2.0 dated 2018-09-25

Title: (Robust) Mediation Analysis
Description: Perform mediation analysis via a (fast and robust) bootstrap test.
Author: Andreas Alfons [aut, cre]
Maintainer: Andreas Alfons <alfons@ese.eur.nl>

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Package WRSS updated to version 2.0 with previous version 1.4 dated 2018-05-28

Title: Water Resources System Simulator
Description: Water resources system simulator is a tool for simulation and analysis of large-scale water resources systems. 'WRSS' proposes functions and methods for construction, simulation and analysis of primary storage and hydropower water resources features (e.g. reservoirs, aquifers, and etc.) based on Standard Operating Policy (SOP).
Author: Rezgar Arabzadeh; Parisa Aberi; Kaveh Panaghi; Shahab Araghinejad; Majid Montaseri
Maintainer: Rezgar Arabzadeh <rezgararabzadeh@ut.ac.ir>

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Package PerseusR updated to version 0.3.4 with previous version 0.3.3 dated 2018-10-30

Title: Perseus R Interop
Description: Enables the interoperability between the Perseus platform for omics data analysis (Tyanova et al. 2016) <doi:10.1038/nmeth.3901> and R. It provides the foundation for developing and running Perseus plugins implemented in R by providing all required input and output handling, including data and parameter parsing as described in Rudolph and Cox 2018 <doi:10.1101/447268>.
Author: Jan Rudolph <rudolph@biochem.mpg.de>
Maintainer: Jan Rudolph <rudolph@biochem.mpg.de>

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Package xts updated to version 0.11-2 with previous version 0.11-1 dated 2018-09-12

Title: eXtensible Time Series
Description: Provide for uniform handling of R's different time-based data classes by extending zoo, maximizing native format information preservation and allowing for user level customization and extension, while simplifying cross-class interoperability.
Author: Jeffrey A. Ryan [aut, cph], Joshua M. Ulrich [cre, aut], Ross Bennett [ctb], Corwin Joy [ctb]
Maintainer: Joshua M. Ulrich <josh.m.ulrich@gmail.com>

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Package binequality updated to version 1.0.4 with previous version 1.0.3 dated 2018-02-18

Title: Methods for Analyzing Binned Income Data
Description: Methods for model selection, model averaging, and calculating metrics, such as the Gini, Theil, Mean Log Deviation, etc, on binned income data where the topmost bin is right-censored. We provide both a non-parametric method, termed the bounded midpoint estimator (BME), which assigns cases to their bin midpoints; except for the censored bins, where cases are assigned to an income estimated by fitting a Pareto distribution. Because the usual Pareto estimate can be inaccurate or undefined, especially in small samples, we implement a bounded Pareto estimate that yields much better results. We also provide a parametric approach, which fits distributions from the generalized beta (GB) family. Because some GB distributions can have poor fit or undefined estimates, we fit 10 GB-family distributions and use multimodel inference to obtain definite estimates from the best-fitting distributions. We also provide binned income data from all United States of America school districts, counties, and states.
Author: Samuel V. Scarpino, Paul von Hippel, and Igor Holas
Maintainer: Samuel V. Scarpino <s.scarpino@northeastern.edu>

Diff between binequality versions 1.0.3 dated 2018-02-18 and 1.0.4 dated 2018-11-05

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Package anyLib updated to version 1.0.5 with previous version 1.0.4 dated 2018-07-20

Title: Install and Load Any Package from CRAN, Bioconductor or Github
Description: Made to make your life simpler with packages, by installing and loading a list of packages, whether they are on CRAN, Bioconductor or github. For github, if you do not have the full path, with the maintainer name in it (e.g. "achateigner/topReviGO"), it will be able to load it but not to install it.
Author: Aurelien Chateigner [aut, cre]
Maintainer: Aurelien Chateigner <aurelien.chateigner@gmail.com>

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Package visvow updated to version 0.3.0 with previous version 0.2.0 dated 2018-10-03

Title: Visible Vowels: Visualization of Vowel Variation
Description: Visualizes vowel variation in f0, F1, F2, F3 and duration.
Author: Wilbert Heeringa, Hans Van de Velde
Maintainer: Wilbert Heeringa <wjheeringa@gmail.com>

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Package ipred updated to version 0.9-8 with previous version 0.9-7 dated 2018-08-14

Title: Improved Predictors
Description: Improved predictive models by indirect classification and bagging for classification, regression and survival problems as well as resampling based estimators of prediction error.
Author: Andrea Peters [aut], Torsten Hothorn [aut, cre], Brian D. Ripley [ctb], Terry Therneau [ctb], Beth Atkinson [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

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Package rAmCharts updated to version 2.1.9 with previous version 2.1.8 dated 2018-06-21

Title: JavaScript Charts Tool
Description: Provides an R interface for using 'AmCharts' Library. Based on 'htmlwidgets', it provides a global architecture to generate 'JavaScript' source code for charts. Most of classes in the library have their equivalent in R with S4 classes; for those classes, not all properties have been referenced but can easily be added in the constructors. Complex properties (e.g. 'JavaScript' object) can be passed as named list. See examples at <http://datastorm- open.github.io/introduction_ramcharts/> and <http://www.amcharts.com/> for more information about the library. The package includes the free version of 'AmCharts' Library. Its only limitation is a small link to the web site displayed on your charts. If you enjoy this library, do not hesitate to refer to this page <http://www.amcharts.com/online-store/> to purchase a licence, and thus support its creators and get a period of Priority Support. See also <http://www.amcharts.com/about/> for more information about 'AmCharts' company.
Author: Benoit Thieurmel [aut, cre], Antanas Marcelionis [aut, cph] ('AmCharts' library in th directory htmlwidgets/lib/amcharts, refer to http://www.amcharts.com/), Jeffery Petit [aut, ctb], Elena Salette [aut, ctb], Titouan Robert [aut, ctb]
Maintainer: Benoit Thieurmel <benoit.thieurmel@datastorm.fr>

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Package shinyWidgets updated to version 0.4.4 with previous version 0.4.3 dated 2018-05-30

Title: Custom Inputs Widgets for Shiny
Description: Some custom inputs widgets to use in Shiny applications, like a toggle switch to replace checkboxes. And other components to pimp your apps.
Author: Victor Perrier [aut, cre], Fanny Meyer [aut], David Granjon [aut] (jQuery Knob shiny interface & sliders appearance), SnapAppointments [cph] (bootstrap-select), Mattia Larentis [ctb, cph] (Bootstrap Switch), Emanuele Marchi [ctb, cph] (Bootstrap Switch), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Flatlogic [cph] (Awesome Bootstrap Checkbox), mouse0270 [ctb, cph] (Material Design Switch), Tristan Edwards [ctb, cph] (SweetAlert), Fabian Lindfors [ctb, cph] (multi.js), Anthony Terrien [ctb, cph] (jQuery Knob), Daniel Eden [ctb, cph] (animate.css), Ganapati V S [ctb, cph] (bttn.css), Brian Grinstead [ctb, cph] (Spectrum), Lokesh Rajendran [ctb, cph] (pretty-checkbox), Leon Gersen [ctb, cph] (wnumb & noUiSlider), Timofey Marochkin [ctb, cph] (air-datepicker), Tobias Ahlin [ctb, cph] (CSS spin)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>

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Package ivtools updated to version 2.0.0 with previous version 1.0.0 dated 2018-04-24

Title: Instrumental Variables
Description: Contains tools for instrumental variables estimation. Currently, non-parametric bounds, two-stage estimation and G-estimation are implemented. Balke, A. and Pearl, J. (1997) <doi:10.2307/2965583>, Vansteelandt S., Bowden J., Babanezhad M., Goetghebeur E. (2011) <doi:10.1214/11-STS360>.
Author: Arvid Sjolander, Elisabeth Dahlqwist, Torben Martinussen
Maintainer: Arvid Sjolander <arvid.sjolander@ki.se>

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Package semtree updated to version 0.9.13 with previous version 0.9.12 dated 2018-02-13

Title: Recursive Partitioning for Structural Equation Models
Description: SEM Trees and SEM Forests -- an extension of model-based decision trees and forests to Structural Equation Models (SEM). SEM trees hierarchically split empirical data into homogeneous groups sharing similar data patterns with respect to a SEM by recursively selecting optimal predictors of these differences. SEM forests are an extension of SEM trees. They are ensembles of SEM trees each built on a random sample of the original data. By aggregating over a forest, we obtain measures of variable importance that are more robust than measures from single trees.
Author: Andreas M. Brandmaier [aut, cre], John J. Prindle [aut]
Maintainer: Andreas M. Brandmaier <andy@brandmaier.de>

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Package rscorecard updated to version 0.11.1 with previous version 0.11.0 dated 2018-10-30

Title: A Method to Download Department of Education College Scorecard Data
Description: A method to download Department of Education College Scorecard data using the public API <https://collegescorecard.ed.gov/data/documentation/>. It is based on the 'dplyr' model of piped commands to select and filter data in a single chained function call. An API key from the U.S. Department of Education is required.
Author: Benjamin Skinner [aut, cre] (<https://orcid.org/0000-0002-0337-7415>)
Maintainer: Benjamin Skinner <btskinner@virginia.edu>

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New package rcss with initial version 1.7
Package: rcss
Type: Package
Title: Convex Switching Systems
Version: 1.7
Date: 2018-11-04
Author: Jeremy Yee and Juri Hinz
Maintainer: Jeremy Yee <jeremyyee@outlook.com.au>
Description: The numerical treatment of optimal switching problems in a finite time setting when the state evolves as a controlled Markov chain consisting of a uncontrolled continuous component following linear dynamics and a controlled Markov chain taking values in a finite set. The reward functions are assumed to be convex and Lipschitz continuous in the continuous state. The action set is finite.
License: GPL
Imports: Rcpp (>= 0.12.18), nabor(>= 0.5.0)
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
Packaged: 2018-11-04 05:16:48 UTC; jeremy
Repository: CRAN
Date/Publication: 2018-11-05 09:40:03 UTC

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Package GLMMadaptive updated to version 0.4-0 with previous version 0.3-0 dated 2018-09-27

Title: Generalized Linear Mixed Models using Adaptive Gaussian Quadrature
Description: Fits generalized linear mixed models for a single grouping factor under maximum likelihood approximating the integrals over the random effects with an adaptive Gaussian quadrature rule; Jose C. Pinheiro and Douglas M. Bates (1995) <doi:10.1080/10618600.1995.10474663>.
Author: Dimitris Rizopoulos [aut, cre] (<https://orcid.org/0000-0001-9397-0900>)
Maintainer: Dimitris Rizopoulos <d.rizopoulos@erasmusmc.nl>

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Package dplR updated to version 1.6.9 with previous version 1.6.8 dated 2018-05-23

Title: Dendrochronology Program Library in R
Description: Perform tree-ring analyses such as detrending, chronology building, and cross dating. Read and write standard file formats used in dendrochronology.
Author: Andy Bunn [aut, cph, cre, trl], Mikko Korpela [aut, cph, trl], Franco Biondi [aut, cph], Filipe Campelo [aut, cph], Pierre Mérian [aut, cph], Fares Qeadan [aut, cph], Christian Zang [aut, cph], Allan Buras [ctb], Jacob Cecile [ctb], Manfred Mudelsee [ctb], Michael Schulz [ctb], Darwin Pucha-Cofrep [aut, cph], Jakob Wernicke [aut, cph]
Maintainer: Andy Bunn <andy.bunn@wwu.edu>

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Package cgraph updated to version 3.0.1 with previous version 3.0.0 dated 2018-11-01

Title: Computational Graphs
Description: Allows to create, evaluate, and differentiate computational graphs in R. A computational graph is a graph representation of a multivariate function decomposed by its (elementary) operations. Nodes in the graph represent arrays while edges represent dependencies among the arrays. An advantage of expressing a function as a computational graph is that this enables to differentiate the function by automatic differentiation. The 'cgraph' package supports various operations including basic arithmetic, trigonometry operations, and linear algebra operations. It differentiates computational graphs by reverse automatic differentiation. The flexible architecture of the package makes it applicable to solve a variety of problems including local sensitivity analysis, gradient-based optimization, and machine learning.
Author: Ron Triepels
Maintainer: Ron Triepels <dev@cgraph.org>

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Package autothresholdr updated to version 1.3.0 with previous version 1.2.1 dated 2018-07-09

Title: An R Port of the 'ImageJ' Plugin 'Auto Threshold'
Description: Algorithms for automatically finding appropriate thresholds for numerical data, with special functions for thresholding images. Provides the 'ImageJ' 'Auto Threshold' plugin functionality to R users. See <http://imagej.net/Auto_Threshold> and Landini et al. (2017) <DOI:10.1111/jmi.12474>.
Author: Rory Nolan [aut, cre, trl] (<https://orcid.org/0000-0002-5239-4043>), Luis Alvarez [ctb] (<https://orcid.org/0000-0003-1316-1906>), Sergi Padilla-Parra [ctb, ths] (<https://orcid.org/0000-0002-8010-9481>), Gabriel Landini [ctb, cph] (<https://orcid.org/0000-0002-9689-0989>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>

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Package jmvcore updated to version 0.9.5 with previous version 0.9.4 dated 2018-09-17

Title: Dependencies for the 'jamovi' Framework
Description: A framework for creating rich interactive analyses for the jamovi platform (see <https://www.jamovi.org> for more information).
Author: Jonathon Love
Maintainer: Jonathon Love <jon@thon.cc>

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Package solrad updated to version 1.0.0 with previous version 0.99.0 dated 2018-05-22

Title: Calculating Solar Radiation and Related Variables Based on Location, Time and Topographical Conditions
Description: For surface energy models and estimation of solar positions and components with varying topography, time and locations. The functions calculate solar top-of-atmosphere, open, diffuse and direct components, atmospheric transmittance and diffuse factors, day length, sunrise and sunset, solar azimuth, zenith, altitude, incidence, and hour angles, earth declination angle, equation of time, and solar constant. Details about the methods and equations are explained in Seyednasrollah, Bijan, Mukesh Kumar, and Timothy E. Link. 'On the role of vegetation density on net snow cover radiation at the forest floor.' Journal of Geophysical Research: Atmospheres 118.15 (2013): 8359-8374, <doi:10.1002/jgrd.50575>.
Author: Bijan Seyednasrollah
Maintainer: Bijan Seyednasrollah <bijan.s.nasr@gmail.com>

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Package pbmcapply updated to version 1.3.0 with previous version 1.2.5 dated 2018-05-19

Title: Tracking the Progress of Mc*pply with Progress Bar
Description: A light-weight package helps you track and visualize the progress of parallel version of vectorized R functions (mc*apply). Parallelization (mc.core > 1) works only on *nix (Linux, Unix such as macOS) system due to the lack of fork() functionality, which is essential for mc*apply, on Windows.
Author: Kevin Kuang (aut), Francesco Napolitano (ctb)
Maintainer: Kevin kuang <kvn.kuang@mail.utoronto.ca>

Diff between pbmcapply versions 1.2.5 dated 2018-05-19 and 1.3.0 dated 2018-11-05

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