Title: Miscellaneous Functions for Creating Adaptive Functions and
Scripts
Description: A set of handy functions. Includes a versatile one line progress bar, one
line function timer with detailed output, time delay function, text histogram, object
preview, CRAN package search, simpler package installer, Linux command install check,
a flexible Mode function, top function, simulation of correlated data, and more.
Author: Nicholas Cooper
Maintainer: Nicholas Cooper <njcooper@gmx.co.uk>
Diff between NCmisc versions 1.1.5 dated 2017-01-03 and 1.1.6 dated 2018-11-11
DESCRIPTION | 12 ++-- MD5 | 110 +++++++++++++++++++++--------------------- NAMESPACE | 54 -------------------- R/NCmisc.R | 89 +++++++++++++++------------------ man/Dim.Rd | 1 man/Header.Rd | 3 - man/Mode.Rd | 3 - man/NCmisc-package.Rd | 6 +- man/Rfile.index.Rd | 7 +- man/Substitute.Rd | 7 +- man/Unlist.Rd | 3 - man/Z.to.p.Rd | 7 +- man/check.linux.install.Rd | 3 - man/comify.Rd | 1 man/cor.with.Rd | 7 +- man/dup.pairs.Rd | 1 man/estimate.memory.Rd | 3 - man/exists.not.function.Rd | 1 man/extend.pc.Rd | 1 man/fakeLines.Rd | 1 man/file.split.Rd | 1 man/force.percentage.Rd | 1 man/force.scalar.Rd | 1 man/get.distinct.cols.Rd | 3 - man/getRepositories.Rd | 4 - man/has.method.Rd | 1 man/headl.Rd | 3 - man/list.functions.in.file.Rd | 7 +- man/list.to.env.Rd | 1 man/loess.scatter.Rd | 1 man/loop.tracker.Rd | 3 - man/memory.summary.Rd | 1 man/must.use.package.Rd | 3 - man/narm.Rd | 3 - man/out.of.Rd | 1 man/p.to.Z.Rd | 7 +- man/packages.loaded.Rd | 2 man/pad.left.Rd | 3 - man/pctile.Rd | 3 - man/ppa.Rd | 1 man/preview.Rd | 1 man/prv.Rd | 1 man/prv.large.Rd | 1 man/rmv.spc.Rd | 7 +- man/search.cran.Rd | 5 - man/sim.cor.Rd | 7 +- man/simple.date.Rd | 1 man/spc.Rd | 7 +- man/standardize.Rd | 3 - man/summarise.r.datasets.Rd | 1 man/textogram.Rd | 3 - man/timeit.Rd | 3 - man/toheader.Rd | 1 man/top.Rd | 1 man/wait.Rd | 3 - man/which.outlier.Rd | 1 56 files changed, 150 insertions(+), 266 deletions(-)
Title: Web Crawler and Scraper
Description: Performs parallel web crawling and web scraping. It is designed to crawl, parse and store web pages to produce data that can be directly used for analysis application. For details see Khalil and Fakir (2017) <DOI:10.1016/j.softx.2017.04.004>.
Author: Salim Khalil [aut, cre] (<https://orcid.org/0000-0002-7804-4041>)
Maintainer: Salim Khalil <khalilsalim1@gmail.com>
Diff between Rcrawler versions 0.1.8-0 dated 2018-10-03 and 0.1.9-1 dated 2018-11-11
DESCRIPTION | 15 - MD5 | 41 +- NAMESPACE | 31 +- R/LinkExtractor.R | 485 +++++++++++++++++++++++++++++---- R/LinkNormalization.R | 81 +++-- R/Linkparamsfilter.R | 55 ++- R/LoginSession.R |only R/Rcrawlerp.R | 689 ++++++++++++++++++++++++++++++++++------------- R/contentscraper.R | 298 ++++++++++++++------ R/getencoding.R | 38 ++ R/install_webdriver.R |only R/robotparser.R | 11 R/run_webdriver.R |only R/tools.R | 88 +++++- man/ContentScraper.Rd | 80 +++-- man/Drv_fetchpage.Rd |only man/LinkExtractor.Rd | 192 +++++++++++-- man/LinkNormalization.Rd | 17 - man/Linkparamsfilter.Rd | 9 man/LoginSession.Rd |only man/Rcrawler.Rd | 269 +++++++++++++++--- man/RobotParser.Rd | 2 man/browser_path.Rd |only man/install_browser.Rd |only man/run_browser.Rd |only man/stop_browser.Rd |only 26 files changed, 1904 insertions(+), 497 deletions(-)
Title: Interacting with the PhenoCam Data and API
Description: A bundle to facilitate working with PhenoCam timeseries and data. The user would be able to obtain phenological time-series and site metadata from the PhenoCam network <https://phenocam.sr.unh.edu/webcam/>.
Author: Bijan Seyednasrollah
Maintainer: Bijan Seyednasrollah <bijan.s.nasr@gmail.com>
Diff between phenocamapi versions 0.1.1 dated 2018-11-04 and 0.1.2 dated 2018-11-11
DESCRIPTION | 9 MD5 | 38 +-- NAMESPACE | 5 R/download_midday_images.R | 24 + R/get_awb_table.R | 2 R/get_midday_list.R | 54 ++-- R/get_pheno_ts.R | 2 R/get_phenos.R | 2 R/get_rois.R | 2 R/parse_phenocam_filenames.R | 34 +- README.md | 9 inst/doc/getting_started_phenocam_api.R | 102 ++++++-- inst/doc/getting_started_phenocam_api.Rmd | 255 ++++++++++++++++---- inst/doc/getting_started_phenocam_api.html | 362 +++++++++++++++++++++++------ inst/doc/phenocam_data_fusion.R | 24 + inst/doc/phenocam_data_fusion.Rmd | 48 ++- inst/doc/phenocam_data_fusion.html | 71 ++++- man/get_midday_list.Rd | 6 vignettes/getting_started_phenocam_api.Rmd | 255 ++++++++++++++++---- vignettes/phenocam_data_fusion.Rmd | 48 ++- 20 files changed, 1036 insertions(+), 316 deletions(-)
Title: Tables with Labels and Some Useful Functions from Spreadsheets
and 'SPSS' Statistics
Description: Package provides tabulation functions with support for 'SPSS'-style
labels, multiple / nested banners, weights, multiple-response variables
and significance testing. There are facilities for nice output of tables
in 'knitr', 'Shiny', R and 'Jupyter' notebooks, '*.xlsx' files. Proper methods
for labelled variables add value labels support to base R functions and to
some functions from other packages. Additionally, the package offers
useful functions for data processing in marketing research / social
surveys - popular data transformation functions from 'SPSS' Statistics
('RECODE', 'COUNT', 'COMPUTE', 'DO IF', etc.) and 'Excel' ('COUNTIF',
'VLOOKUP', etc.). Package is intended to help people to move data
processing from 'Excel'/'SPSS' to R.
Author: Gregory Demin [aut, cre]
Maintainer: Gregory Demin <gdemin@gmail.com>
Diff between expss versions 0.8.7 dated 2018-06-14 and 0.8.8 dated 2018-11-11
expss-0.8.7/expss/R/dtfrm.R |only expss-0.8.7/expss/R/from_text.R |only expss-0.8.7/expss/man/from_text.Rd |only expss-0.8.7/expss/tests/testthat/test_by_groups.R |only expss-0.8.7/expss/tests/testthat/test_dtfrm.R |only expss-0.8.7/expss/tests/testthat/test_from_text.R |only expss-0.8.8/expss/DESCRIPTION | 14 expss-0.8.8/expss/MD5 | 194 ++-- expss-0.8.8/expss/NAMESPACE | 42 - expss-0.8.8/expss/NEWS | 13 expss-0.8.8/expss/R/S3_methods.R | 109 +- expss-0.8.8/expss/R/aaa_utils.R | 37 expss-0.8.8/expss/R/add_rows.R | 2 expss-0.8.8/expss/R/as.etable.R | 11 expss-0.8.8/expss/R/caption.R |only expss-0.8.8/expss/R/category.R | 2 expss-0.8.8/expss/R/common_table_utils.R | 2 expss-0.8.8/expss/R/cro.R | 2 expss-0.8.8/expss/R/cro_fun.R | 67 + expss-0.8.8/expss/R/custom_tables.R | 8 expss-0.8.8/expss/R/dichotomy.R | 4 expss-0.8.8/expss/R/drop_empty.R | 4 expss-0.8.8/expss/R/expss.R | 6 expss-0.8.8/expss/R/expss_options.R | 62 + expss-0.8.8/expss/R/fre.R | 6 expss-0.8.8/expss/R/grouping.R | 1 expss-0.8.8/expss/R/html_datatable.R | 34 expss-0.8.8/expss/R/html_table.R | 102 +- expss-0.8.8/expss/R/if_val.R | 2 expss-0.8.8/expss/R/labels.R | 67 + expss-0.8.8/expss/R/mrset.R | 4 expss-0.8.8/expss/R/prop.R | 2 expss-0.8.8/expss/R/selectors.R | 4 expss-0.8.8/expss/R/sheet.R |only expss-0.8.8/expss/R/significance_cpct.R | 6 expss-0.8.8/expss/R/split_labels.R | 16 expss-0.8.8/expss/R/split_separate.R | 4 expss-0.8.8/expss/R/text_to_columns.R |only expss-0.8.8/expss/R/vlookup.R | 2 expss-0.8.8/expss/R/weighted_stats.R | 15 expss-0.8.8/expss/R/xl_write.R |only expss-0.8.8/expss/build/vignette.rds |binary expss-0.8.8/expss/inst/doc/labels-support.R | 89 ++ expss-0.8.8/expss/inst/doc/labels-support.Rmd | 134 +++ expss-0.8.8/expss/inst/doc/labels-support.html | 416 +++++++++- expss-0.8.8/expss/inst/doc/tables-with-labels.R | 10 expss-0.8.8/expss/inst/doc/tables-with-labels.Rmd | 11 expss-0.8.8/expss/inst/doc/tables-with-labels.html | 210 ++++- expss-0.8.8/expss/inst/doc/xlsx-export.R |only expss-0.8.8/expss/inst/doc/xlsx-export.Rmd |only expss-0.8.8/expss/inst/doc/xlsx-export.html |only expss-0.8.8/expss/man/add_rows.Rd | 3 expss-0.8.8/expss/man/as.datatable_widget.Rd | 8 expss-0.8.8/expss/man/as.dichotomy.Rd | 2 expss-0.8.8/expss/man/cro.Rd | 38 expss-0.8.8/expss/man/cro_fun.Rd | 40 expss-0.8.8/expss/man/do_repeat.Rd | 1 expss-0.8.8/expss/man/expss.options.Rd | 58 + expss-0.8.8/expss/man/fre.Rd | 3 expss-0.8.8/expss/man/htmlTable.etable.Rd | 57 + expss-0.8.8/expss/man/prop.Rd | 2 expss-0.8.8/expss/man/reexports.Rd | 77 - expss-0.8.8/expss/man/set_caption.Rd |only expss-0.8.8/expss/man/sheet.Rd | 33 expss-0.8.8/expss/man/significance.Rd | 85 +- expss-0.8.8/expss/man/split_labels.Rd | 11 expss-0.8.8/expss/man/tables.Rd | 18 expss-0.8.8/expss/man/text_to_columns.Rd |only expss-0.8.8/expss/man/val_lab.Rd | 2 expss-0.8.8/expss/man/var_lab.Rd | 23 expss-0.8.8/expss/man/w_mean.Rd | 6 expss-0.8.8/expss/man/write_labels.Rd | 27 expss-0.8.8/expss/man/xl_write.Rd |only expss-0.8.8/expss/tests/testthat/rds/htmlTable1_caption.rds |only expss-0.8.8/expss/tests/testthat/rds/htmlTable1_list.rds |only expss-0.8.8/expss/tests/testthat/rds/htmlTable1_list_norogroups.rds |only expss-0.8.8/expss/tests/testthat/rds/htmlTable3_no_rowgroups_caption.rds |only expss-0.8.8/expss/tests/testthat/rds/print_etable_2_caption.txt |only expss-0.8.8/expss/tests/testthat/rds/print_etable_caption.txt |only expss-0.8.8/expss/tests/testthat/rds/print_etable_caption_raw.txt |only expss-0.8.8/expss/tests/testthat/rds/print_etable_commented_caption_1.txt |only expss-0.8.8/expss/tests/testthat/rds/print_etable_rnotebook_caption.txt |only expss-0.8.8/expss/tests/testthat/rds/split_subheadings23.rds |only expss-0.8.8/expss/tests/testthat/test_add_rows.R | 8 expss-0.8.8/expss/tests/testthat/test_cro_extended.R | 10 expss-0.8.8/expss/tests/testthat/test_cro_fun_df_extended.R | 10 expss-0.8.8/expss/tests/testthat/test_custom_tables.R | 8 expss-0.8.8/expss/tests/testthat/test_dichotomy.R | 2 expss-0.8.8/expss/tests/testthat/test_drop_empty.R | 28 expss-0.8.8/expss/tests/testthat/test_drop_unused_labels.R | 2 expss-0.8.8/expss/tests/testthat/test_fre.R | 4 expss-0.8.8/expss/tests/testthat/test_htmlTable.R | 28 expss-0.8.8/expss/tests/testthat/test_if_val.R | 46 - expss-0.8.8/expss/tests/testthat/test_into.R | 2 expss-0.8.8/expss/tests/testthat/test_labels.R | 26 expss-0.8.8/expss/tests/testthat/test_mean_if.R | 4 expss-0.8.8/expss/tests/testthat/test_merge.R | 6 expss-0.8.8/expss/tests/testthat/test_methods.R | 26 expss-0.8.8/expss/tests/testthat/test_mrset.R | 2 expss-0.8.8/expss/tests/testthat/test_nest.R | 4 expss-0.8.8/expss/tests/testthat/test_parameter.R | 8 expss-0.8.8/expss/tests/testthat/test_prop.R | 16 expss-0.8.8/expss/tests/testthat/test_sheet.R |only expss-0.8.8/expss/tests/testthat/test_split_labels.R | 13 expss-0.8.8/expss/tests/testthat/test_split_separate.R | 6 expss-0.8.8/expss/tests/testthat/test_text_to_columns.R |only expss-0.8.8/expss/tests/testthat/test_utils.R | 2 expss-0.8.8/expss/tests/testthat/test_vlookup.R | 28 expss-0.8.8/expss/tests/testthat/test_xl_write.R |only expss-0.8.8/expss/vignettes/labels-support.Rmd | 134 +++ expss-0.8.8/expss/vignettes/screen_xlsx1.png |only expss-0.8.8/expss/vignettes/screen_xlsx2.png |only expss-0.8.8/expss/vignettes/tables-with-labels.Rmd | 11 expss-0.8.8/expss/vignettes/xlsx-export.Rmd |only 114 files changed, 1978 insertions(+), 664 deletions(-)
Title: Number and Brightness Image Analysis
Description: Calculation of molecular number and brightness from
fluorescence microscopy image series. The software was published in a 2016
paper <doi:10.1093/bioinformatics/btx434>. The seminal paper for the
technique is Digman et al. 2008 <doi:10.1529/biophysj.107.114645>. A review
of the technique was published in 2017 <doi:10.1016/j.ymeth.2017.12.001>.
Author: Rory Nolan [aut, cre, cph] (<https://orcid.org/0000-0002-5239-4043>),
Luis Alvarez [ctb, cph] (<https://orcid.org/0000-0003-1316-1906>),
Sergi Padilla-Parra [ctb, ths, cph]
(<https://orcid.org/0000-0002-8010-9481>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between nandb versions 1.0.1 dated 2018-05-08 and 2.0.0 dated 2018-11-11
nandb-1.0.1/nandb/inst/doc/nandb.R |only nandb-1.0.1/nandb/inst/doc/nandb.Rmd |only nandb-1.0.1/nandb/inst/doc/nandb.html |only nandb-1.0.1/nandb/vignettes/nandb.Rmd |only nandb-2.0.0/nandb/DESCRIPTION | 42 nandb-2.0.0/nandb/MD5 | 121 +- nandb-2.0.0/nandb/NAMESPACE | 3 nandb-2.0.0/nandb/NEWS.md | 24 nandb-2.0.0/nandb/R/RcppExports.R | 32 nandb-2.0.0/nandb/R/brightness.R | 312 +++-- nandb-2.0.0/nandb/R/cc_brightness.R | 341 +++--- nandb-2.0.0/nandb/R/cc_number.R | 343 +++--- nandb-2.0.0/nandb/R/class_constructors.R | 315 +++-- nandb-2.0.0/nandb/R/cross_var.R | 17 nandb-2.0.0/nandb/R/graphics.R |only nandb-2.0.0/nandb/R/io.R | 18 nandb-2.0.0/nandb/R/nandb.R | 3 nandb-2.0.0/nandb/R/number.R | 350 +++--- nandb-2.0.0/nandb/R/utils.R | 711 +++++++++---- nandb-2.0.0/nandb/build/partial.rdb |binary nandb-2.0.0/nandb/build/vignette.rds |binary nandb-2.0.0/nandb/inst/WORDLIST |only nandb-2.0.0/nandb/inst/doc/batch-mode.R |only nandb-2.0.0/nandb/inst/doc/batch-mode.Rmd |only nandb-2.0.0/nandb/inst/doc/batch-mode.html |only nandb-2.0.0/nandb/inst/doc/brightness-timeseries.R |only nandb-2.0.0/nandb/inst/doc/brightness-timeseries.Rmd |only nandb-2.0.0/nandb/inst/doc/brightness-timeseries.html |only nandb-2.0.0/nandb/inst/doc/single-images.R |only nandb-2.0.0/nandb/inst/doc/single-images.Rmd |only nandb-2.0.0/nandb/inst/doc/single-images.html |only nandb-2.0.0/nandb/inst/extdata/50.tif |binary nandb-2.0.0/nandb/inst/extdata/50_big.tif |binary nandb-2.0.0/nandb/inst/extdata/needs_rescaling.tif |binary nandb-2.0.0/nandb/inst/extdata/two_ch.tif |binary nandb-2.0.0/nandb/man/brightness.Rd | 38 nandb-2.0.0/nandb/man/brightness_folder.Rd | 34 nandb-2.0.0/nandb/man/brightness_timeseries.Rd | 52 nandb-2.0.0/nandb/man/brightness_timeseries_folder.Rd | 45 nandb-2.0.0/nandb/man/cc-nb-img-classes.Rd | 21 nandb-2.0.0/nandb/man/cc-nb-ts-img-classes.Rd | 31 nandb-2.0.0/nandb/man/cc_brightness.Rd | 54 nandb-2.0.0/nandb/man/cc_brightness_folder.Rd | 46 nandb-2.0.0/nandb/man/cc_brightness_timeseries.Rd | 59 - nandb-2.0.0/nandb/man/cc_brightness_timeseries_folder.Rd | 52 nandb-2.0.0/nandb/man/cc_number.Rd | 58 - nandb-2.0.0/nandb/man/cc_number_folder.Rd | 50 nandb-2.0.0/nandb/man/cc_number_timeseries.Rd | 63 - nandb-2.0.0/nandb/man/cc_number_timeseries_folder.Rd | 56 - nandb-2.0.0/nandb/man/figures |only nandb-2.0.0/nandb/man/matrix_raster_plot.Rd |only nandb-2.0.0/nandb/man/nandb.Rd | 1 nandb-2.0.0/nandb/man/nb-img-classes.Rd | 22 nandb-2.0.0/nandb/man/nb-ts-img-classes.Rd | 33 nandb-2.0.0/nandb/man/number.Rd | 35 nandb-2.0.0/nandb/man/number_folder.Rd | 30 nandb-2.0.0/nandb/man/number_timeseries.Rd | 56 - nandb-2.0.0/nandb/man/number_timeseries_folder.Rd | 36 nandb-2.0.0/nandb/src/RcppExports.cpp | 63 - nandb-2.0.0/nandb/src/utils.cpp |only nandb-2.0.0/nandb/tests/spelling.R |only nandb-2.0.0/nandb/tests/testthat/test-brightness.R | 279 +++-- nandb-2.0.0/nandb/tests/testthat/test-cc_brightness.R | 183 ++- nandb-2.0.0/nandb/tests/testthat/test-cc_number.R | 177 ++- nandb-2.0.0/nandb/tests/testthat/test-class_constructors.R | 127 +- nandb-2.0.0/nandb/tests/testthat/test-cross_var-examples.R | 21 nandb-2.0.0/nandb/tests/testthat/test-filters.R | 27 nandb-2.0.0/nandb/tests/testthat/test-graphics.R |only nandb-2.0.0/nandb/tests/testthat/test-number.R | 251 +++- nandb-2.0.0/nandb/tests/testthat/test-utils.R | 217 ++- nandb-2.0.0/nandb/vignettes/batch-mode.Rmd |only nandb-2.0.0/nandb/vignettes/brightness-timeseries.Rmd |only nandb-2.0.0/nandb/vignettes/single-images.Rmd |only 73 files changed, 3157 insertions(+), 1692 deletions(-)
Title: 'Jupyter' Display Machinery
Description: An interface to the rich display capabilities of 'Jupyter' front-ends (e.g. 'Jupyter Notebook') <https://jupyter.org>.
Designed to be used from a running 'IRkernel' session <https://irkernel.github.io>.
Author: Thomas Kluyver [aut, cph],
Philipp Angerer [aut, cph, cre],
Jan Schulz [aut, cph]
Maintainer: Philipp Angerer <phil.angerer@gmail.com>
Diff between IRdisplay versions 0.6 dated 2018-09-24 and 0.6.1 dated 2018-11-11
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/display.r | 2 -- 3 files changed, 5 insertions(+), 7 deletions(-)
Title: Formula-Driven Table Generation
Description: Computes and displays complex tables of summary statistics.
Output may be in LaTeX, HTML, plain text, or an R
matrix for further processing.
Author: Duncan Murdoch
Maintainer: Duncan Murdoch <murdoch@stats.uwo.ca>
Diff between tables versions 0.8.4 dated 2018-05-21 and 0.8.7 dated 2018-11-11
DESCRIPTION | 6 - MD5 | 22 ++--- R/asTabular.R | 1 R/toKable.R | 18 ++-- build/vignette.rds |binary inst/NEWS | 11 ++ inst/doc/HTML.html | 224 +++++++++++++++++++++++++-------------------------- inst/doc/tables.Rnw | 4 inst/doc/tables.pdf |binary inst/todo.txt | 2 man/toKable.Rd | 11 +- vignettes/tables.Rnw | 4 12 files changed, 162 insertions(+), 141 deletions(-)
Title: Spatial Analysis of Field Trials with Splines
Description: Analysis of field trial experiments by modelling spatial trends using two-dimensional Penalised spline (P-spline) models.
Author: Maria Xose Rodriguez-Alvarez [aut, cre],
Martin Boer [aut],
Paul Eilers [aut],
Fred van Eeuwijk [ctb]
Maintainer: Maria Xose Rodriguez-Alvarez <mxrodriguez@bcamath.org>
Diff between SpATS versions 1.0-8 dated 2018-05-30 and 1.0-9 dated 2018-11-11
DESCRIPTION | 8 ++++---- MD5 | 17 +++++++++-------- NEWS | 3 +++ R/SpATS.R | 28 ++++++++++++++++------------ R/getHeritability.R | 3 ++- R/obtain.nominal.dimension.R |only R/summary.SpATS.R | 8 ++++++-- man/SpATS-package.Rd | 4 ++-- man/SpATS.Rd | 1 + man/summary.SpATS.Rd | 4 ++-- 10 files changed, 45 insertions(+), 31 deletions(-)
Title: An Easy Way to Report Regression Analysis
Description: Provides an easy way to report the results of regression analysis, including:
1. Proportional hazards regression from function 'coxph' of package 'survival';
2. Conditional logistic regression from function 'clogit' of package 'survival';
3. Ordered logistic regression from function 'polr' of package 'MASS';
4. Binary logistic regression from function 'glm' of package 'stats';
5. Linear regression from function 'lm' of package 'stats';
6. Risk regression model for survival analysis with competing risks from function 'FGR' of package 'riskRegression';
7. Multilevel model from function 'lme' of package 'nlme'.
Author: Zhicheng Du, Yuantao Hao
Maintainer: Zhicheng Du<dgdzc@hotmail.com>
Diff between reportReg versions 0.2.0 dated 2018-04-22 and 0.3.0 dated 2018-11-11
DESCRIPTION | 19 ++++---- MD5 | 6 +- R/reportReg.R | 117 ++++++++++++++++++++++++++++++++++++------------------- man/reportReg.Rd | 22 ++++++---- 4 files changed, 105 insertions(+), 59 deletions(-)
Title: 'ggplot2' Based Publication Ready Plots
Description: The 'ggplot2' package is excellent and flexible for elegant data
visualization in R. However the default generated plots requires some formatting
before we can send them for publication. Furthermore, to customize a 'ggplot',
the syntax is opaque and this raises the level of difficulty for researchers
with no advanced R programming skills. 'ggpubr' provides some easy-to-use
functions for creating and customizing 'ggplot2'- based publication ready plots.
Author: Alboukadel Kassambara [aut, cre]
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>
Diff between ggpubr versions 0.1.8 dated 2018-08-30 and 0.1.9 dated 2018-11-11
DESCRIPTION | 8 +- MD5 | 46 +++++++------- NEWS.md | 17 ++++- R/compare_means.R | 3 R/ggadd.R | 1 R/ggqqplot.R | 1 R/ggtexttable.R | 4 - R/stat_compare_means.R | 3 R/utilities_color.R | 41 ++++++++---- README.md | 10 +-- man/ggtexttable.Rd | 4 - tools/README-cleveland-dot-plots-1.png |binary tools/README-deviation-graphs-1.png |binary tools/README-deviation-graphs-horizontal-1.png |binary tools/README-ggpubr-1.png |binary tools/README-ggpubr-2.png |binary tools/README-ggpubr-box-plot-dot-plots-strip-charts-1.png |binary tools/README-ggpubr-box-plot-dot-plots-strip-charts-2.png |binary tools/README-ggpubr-box-plot-dot-plots-strip-charts-3.png |binary tools/README-lollipop-chart-1.png |binary tools/README-lollipop-chart-deviation-1.png |binary tools/README-lollipop-chart-rotate-1.png |binary tools/README-ordered-bar-plots-1.png |binary tools/README-ordered-bar-plots-by-groups-1.png |binary 24 files changed, 89 insertions(+), 49 deletions(-)
Title: Hidden Markov Models with Discrete Non-Parametric Observation
Distributions
Description: Fits hidden Markov models with discrete non-parametric
observation distributions to data sets. The observations may
be univariate or bivariate. Simulates data from such models.
Finds most probable underlying hidden states, the most
probable sequences of such states, and the log likelihood
of a collection of observations given the parameters of
the model. Auxiliary predictors are accommodated in the
univariate setting.
Author: Rolf Turner
Maintainer: Rolf Turner <r.turner@auckland.ac.nz>
Diff between hmm.discnp versions 0.2-4 dated 2016-04-08 and 2.1-3 dated 2018-11-11
hmm.discnp-0.2-4/hmm.discnp/R/charList.R |only hmm.discnp-0.2-4/hmm.discnp/R/sim.hmm.R |only hmm.discnp-0.2-4/hmm.discnp/data/colifCount.rda |only hmm.discnp-0.2-4/hmm.discnp/man/colifCount.Rd |only hmm.discnp-0.2-4/hmm.discnp/man/sim.hmm.Rd |only hmm.discnp-2.1-3/hmm.discnp/ChangeLog | 704 +++++++++++ hmm.discnp-2.1-3/hmm.discnp/DESCRIPTION | 24 hmm.discnp-2.1-3/hmm.discnp/MD5 | 159 +- hmm.discnp-2.1-3/hmm.discnp/NAMESPACE | 17 hmm.discnp-2.1-3/hmm.discnp/R/First.R | 13 hmm.discnp-2.1-3/hmm.discnp/R/anova.hmm.discnp.R |only hmm.discnp-2.1-3/hmm.discnp/R/check.yval.R | 115 + hmm.discnp-2.1-3/hmm.discnp/R/checkConstColumns.R |only hmm.discnp-2.1-3/hmm.discnp/R/checkyXoK.R |only hmm.discnp-2.1-3/hmm.discnp/R/cnvrtRho.R |only hmm.discnp-2.1-3/hmm.discnp/R/derivf.R |only hmm.discnp-2.1-3/hmm.discnp/R/derivp.R |only hmm.discnp-2.1-3/hmm.discnp/R/derivpi.R |only hmm.discnp-2.1-3/hmm.discnp/R/directMaxStuff.R |only hmm.discnp-2.1-3/hmm.discnp/R/ffun.R | 106 + 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Title: Conditional Akaike Information Criterion for 'lme4'
Description: Provides functions for the estimation of the conditional Akaike
information in generalized mixed-effect models fitted with (g)lmer()
from 'lme4'.
Author: Benjamin Saefken and David Ruegamer, with contributions from Sonja
Greven and Thomas Kneib
Maintainer: David Ruegamer <david.ruegamer@gmail.com>
Diff between cAIC4 versions 0.5 dated 2018-09-18 and 0.6 dated 2018-11-11
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/conditionalBootstrap.R | 11 +++++++++-- R/helperfuns_stepcAIC.R | 2 +- R/stepcAIC.R | 20 ++++++++++++-------- build/partial.rdb |binary 6 files changed, 32 insertions(+), 21 deletions(-)
Title: Generate LaTeX Code for Auto-Multiple-Choice (AMC)
Description: Generate code for use with the Optical Mark Recognition free software Auto Multiple Choice (AMC). More specifically, this package provides functions that use as input the question and answer texts, and output the LaTeX code for AMC.
Author: Nils Myszkowski
Maintainer: Nils Myszkowski <nmyszkowski@pace.edu>
Diff between AMCTestmakeR versions 0.1.0 dated 2017-03-29 and 1.0.0 dated 2018-11-11
DESCRIPTION | 8 - MD5 | 26 ++--- NEWS.md |only R/AMCcreateelements.R | 20 ++-- R/AMCcreatequestions.R | 71 +++++++++++++- R/AMCcreatetest.R | 219 +++++++++++++++++++++++++++++++++++++-------- README.md |only build/vignette.rds |binary inst/doc/AMCTestmaker.R | 29 +++-- inst/doc/AMCTestmaker.Rmd | 35 ++++--- inst/doc/AMCTestmaker.html | 111 +++++++++++----------- man/AMCcreateelements.Rd | 10 +- man/AMCcreatequestions.Rd | 19 ++- man/AMCcreatetest.Rd | 72 ++++++++++++-- vignettes/AMCTestmaker.Rmd | 35 ++++--- 15 files changed, 466 insertions(+), 189 deletions(-)
Title: N-Gram Based Text Categorization
Description: Text categorization based on n-grams.
Author: Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>),
Johannes Rauch [aut],
Christian Buchta [aut],
Ingo Feinerer [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between textcat versions 1.0-5 dated 2017-02-20 and 1.0-6 dated 2018-11-11
DESCRIPTION | 11 ++++++----- MD5 | 16 +++++++++------- R/textcat.R | 4 +++- build/partial.rdb |binary data/ECIMCI_profiles.rda |binary data/TC_byte_profiles.rda |binary data/TC_char_profiles.rda |binary inst/po |only man/textcat_profile_db.Rd | 2 +- po |only 10 files changed, 19 insertions(+), 14 deletions(-)
Title: Bayesian Generalized Linear Regression
Description: Bayesian Generalized Linear Regression.
Author: Gustavo de los Campos, Paulino Perez Rodriguez,
Maintainer: Paulino Perez Rodriguez <perpdgo@colpos.mx>
Diff between BGLR versions 1.0.7 dated 2018-08-24 and 1.0.8 dated 2018-11-11
CHANGELOG | 16 ++ DESCRIPTION | 16 +- MD5 | 29 ++-- NAMESPACE | 1 R/BGLR.R | 273 +++++++++++++++++++++++++---------------------- R/methods.R | 3 R/utils.R | 6 - inst/CITATION |only inst/doc/BGLR-extdoc.pdf |binary man/mice.Rd | 1 man/mice.X.Rd | 1 man/mice.pheno.Rd | 1 man/wheat.Rd | 2 src/Makevars.win | 2 src/init.c | 6 - src/util_sample.c | 93 ++++++++++++++-- 16 files changed, 289 insertions(+), 161 deletions(-)