Title: Manage Cached Files
Description: Suite of tools for managing cached files, targeting
use in other R packages. Uses 'rappdirs' for cross-platform paths.
Provides utilities to manage cache directories, including targeting
files by path or by key; cached directories can be compressed and
uncompressed easily to save disk space.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between hoardr versions 0.5.0 dated 2018-10-13 and 0.5.2 dated 2018-12-01
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 8 ++++++++ R/hoard_client.R | 5 ++--- inst/doc/hoardr_vignette.html | 10 +++++----- tests/testthat/test-hoard.R | 18 +++++++++++++++++- 6 files changed, 41 insertions(+), 18 deletions(-)
Title: Grouped Statistical Analyses in a Tidy Way
Description: Collection of functions to run statistical tests across all levels
of multiple grouping variables.
Author: Indrajeet Patil [aut, cre] (<https://orcid.org/0000-0003-1995-6531>)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between groupedstats versions 0.0.3 dated 2018-10-05 and 0.0.4 dated 2018-12-01
groupedstats-0.0.3/groupedstats/R/helpers.R |only groupedstats-0.0.3/groupedstats/R/utils-pipe.R |only groupedstats-0.0.3/groupedstats/man/figures/README-dependency_plot-1.png |only groupedstats-0.0.4/groupedstats/DESCRIPTION | 24 - groupedstats-0.0.4/groupedstats/MD5 | 64 ++-- groupedstats-0.0.4/groupedstats/NAMESPACE | 4 groupedstats-0.0.4/groupedstats/NEWS.md | 10 groupedstats-0.0.4/groupedstats/R/data.R | 4 groupedstats-0.0.4/groupedstats/R/grouped_aov.R | 6 groupedstats-0.0.4/groupedstats/R/grouped_glm.R | 6 groupedstats-0.0.4/groupedstats/R/grouped_glmer.R | 5 groupedstats-0.0.4/groupedstats/R/grouped_lm.R | 6 groupedstats-0.0.4/groupedstats/R/grouped_lmer.R | 11 groupedstats-0.0.4/groupedstats/R/grouped_proptest.R | 6 groupedstats-0.0.4/groupedstats/R/grouped_robustslr.R | 10 groupedstats-0.0.4/groupedstats/R/grouped_slr.R | 10 groupedstats-0.0.4/groupedstats/R/grouped_summary.R | 20 - groupedstats-0.0.4/groupedstats/R/grouped_ttest.R | 10 groupedstats-0.0.4/groupedstats/R/grouped_wilcox.R | 10 groupedstats-0.0.4/groupedstats/R/groupedstats-package.R | 1 groupedstats-0.0.4/groupedstats/R/lm_effsize_ci.R |only groupedstats-0.0.4/groupedstats/R/set_cwd.R | 18 - groupedstats-0.0.4/groupedstats/R/signif_column.R |only groupedstats-0.0.4/groupedstats/R/specify_decimal_p.R | 25 + groupedstats-0.0.4/groupedstats/R/utils-tidy.R |only groupedstats-0.0.4/groupedstats/README.md | 143 ++++------ groupedstats-0.0.4/groupedstats/inst/WORDLIST | 2 groupedstats-0.0.4/groupedstats/man/compound.Rd |only groupedstats-0.0.4/groupedstats/man/figures/README-grouped_summary3-1.png |binary groupedstats-0.0.4/groupedstats/man/lm_effsize_ci.Rd | 2 groupedstats-0.0.4/groupedstats/man/pipe.Rd | 2 groupedstats-0.0.4/groupedstats/man/set_cwd.Rd | 9 groupedstats-0.0.4/groupedstats/man/signif_column.Rd | 6 groupedstats-0.0.4/groupedstats/man/specify_decimal_p.Rd | 16 - groupedstats-0.0.4/groupedstats/man/tibble.Rd |only groupedstats-0.0.4/groupedstats/tests/README.md |only groupedstats-0.0.4/groupedstats/tests/testthat |only groupedstats-0.0.4/groupedstats/tests/testthat.R |only 38 files changed, 229 insertions(+), 201 deletions(-)
Title: Deque, Set, and Dict - R6 Based Container Classes with Iterators
Description: Common container data structures deque, set and dict (resembling
'Python's dict type) with typical member functions to insert, delete and
access container elements. Provides iterators and reference semantics.
Author: Roman Pahl [aut, cre]
Maintainer: Roman Pahl <roman.pahl@gmail.com>
Diff between container versions 0.2.1 dated 2018-07-01 and 0.3.0 dated 2018-12-01
container-0.2.1/container/R/Container.R |only container-0.2.1/container/R/Deque.R |only container-0.2.1/container/R/Dict.R |only container-0.2.1/container/R/Set.R |only container-0.2.1/container/tests/testthat/test-Container.R |only container-0.2.1/container/tests/testthat/test-Deque.R |only container-0.2.1/container/tests/testthat/test-Dict.R |only container-0.2.1/container/tests/testthat/test-Iterator.R |only container-0.2.1/container/tests/testthat/test-Set.R |only container-0.3.0/container/DESCRIPTION | 8 container-0.3.0/container/MD5 | 72 container-0.3.0/container/NAMESPACE | 109 container-0.3.0/container/R/container-S3.R |only container-0.3.0/container/R/container-pkg.R | 1 container-0.3.0/container/R/container.R |only container-0.3.0/container/R/deque-S3.R |only container-0.3.0/container/R/deque.R |only container-0.3.0/container/R/dict-S3.R |only container-0.3.0/container/R/dict.R |only container-0.3.0/container/R/iterator.R | 273 +- container-0.3.0/container/R/set-S3.R |only container-0.3.0/container/R/set.R |only container-0.3.0/container/build/vignette.rds |binary container-0.3.0/container/inst/doc/overview-S3.R |only container-0.3.0/container/inst/doc/overview-S3.Rmd |only container-0.3.0/container/inst/doc/overview-S3.html |only container-0.3.0/container/inst/doc/overview.R | 451 +-- container-0.3.0/container/inst/doc/overview.Rmd | 696 ++--- container-0.3.0/container/inst/doc/overview.html | 1388 ++++++----- container-0.3.0/container/man/Container.Rd | 167 - container-0.3.0/container/man/ContainerS3.Rd |only container-0.3.0/container/man/ContainerS3op.Rd |only container-0.3.0/container/man/Deque.Rd | 157 - container-0.3.0/container/man/DequeDictS3funcs.Rd |only container-0.3.0/container/man/Dict.Rd | 154 - container-0.3.0/container/man/Iterable.Rd | 72 container-0.3.0/container/man/Iterator.Rd | 161 - container-0.3.0/container/man/Set.Rd | 117 container-0.3.0/container/man/container.pkg.Rd | 32 container-0.3.0/container/man/dequeS3.Rd |only container-0.3.0/container/man/dequeS3binOp.Rd |only container-0.3.0/container/man/dictS3.Rd |only container-0.3.0/container/man/dictS3binOp.Rd |only container-0.3.0/container/man/dictS3replace.Rd |only container-0.3.0/container/man/setS3.Rd |only container-0.3.0/container/man/setS3binOp.Rd |only container-0.3.0/container/tests/testthat/test-container-S3.R |only container-0.3.0/container/tests/testthat/test-container.R |only container-0.3.0/container/tests/testthat/test-deque-S3.R |only container-0.3.0/container/tests/testthat/test-deque.R |only container-0.3.0/container/tests/testthat/test-dict-S3.R |only container-0.3.0/container/tests/testthat/test-dict.R |only container-0.3.0/container/tests/testthat/test-iterator.R |only container-0.3.0/container/tests/testthat/test-set-S3.R |only container-0.3.0/container/tests/testthat/test-set.R |only container-0.3.0/container/vignettes/overview-S3.Rmd |only container-0.3.0/container/vignettes/overview.Rmd | 696 ++--- 57 files changed, 2579 insertions(+), 1975 deletions(-)
Title: Estimation Methods for Causal Inference Based on Inverse
Probability Weighting
Description: Various estimation methods for causal inference based on inverse probability weighting. Specifically, the package includes methods for estimating average treatment effects as well as direct and indirect effects in causal mediation analysis. The models refer to the studies of Froelich (2007) <doi:10.1016/j.jeconom.2006.06.004>, Huber (2012) <doi:10.3102/1076998611411917>, Huber (2014) <doi:10.1080/07474938.2013.806197>, Huber (2014) <doi:10.1002/jae.2341>, and Froelich and Huber (2017) <doi:10.1111/rssb.12232>.
Author: Hugo Bodory and Martin Huber
Maintainer: Hugo Bodory <hugo.bodory@unifr.ch>
Diff between causalweight versions 0.1.1 dated 2018-08-01 and 0.1.2 dated 2018-12-01
DESCRIPTION | 8 +-- MD5 | 24 +++++----- NAMESPACE | 1 R/functions.R | 110 +++++++++++++++++++++++++++++++++------------- R/lateweight.R | 2 R/medlateweight.R | 2 R/medweight.R | 27 +++++++---- R/medweightcont.R | 15 +++--- R/treatweight.R | 7 +- inst/doc/bodory-huber.pdf |binary man/medweight.Rd | 24 +++++++--- man/medweightcont.Rd | 5 +- man/treatweight.Rd | 4 - 13 files changed, 151 insertions(+), 78 deletions(-)
Title: Develop a 'Telegram Bot' with R
Description: Provides a pure interface for the 'Telegram Bot API' <http://core.telegram.org/bots/api>. In addition to the pure API implementation, it features a number of tools to make the development of 'Telegram' bots with R easy and straightforward, providing an easy-to-use interface that takes some work off the programmer.
Author: Ernest Benedito [aut, cre]
Maintainer: Ernest Benedito <ebeneditos@gmail.com>
Diff between telegram.bot versions 2.1.0 dated 2018-11-12 and 2.2.0 dated 2018-12-01
telegram.bot-2.1.0/telegram.bot/R/messagefilters.R |only telegram.bot-2.1.0/telegram.bot/inst/doc/set-a-proxy.R |only telegram.bot-2.1.0/telegram.bot/inst/doc/set-a-proxy.Rmd |only telegram.bot-2.1.0/telegram.bot/inst/doc/set-a-proxy.html |only telegram.bot-2.1.0/telegram.bot/inst/doc/telegrambot-custom-filters.R |only telegram.bot-2.1.0/telegram.bot/inst/doc/telegrambot-custom-filters.Rmd |only telegram.bot-2.1.0/telegram.bot/inst/doc/telegrambot-custom-filters.html |only telegram.bot-2.1.0/telegram.bot/vignettes/set-a-proxy.Rmd |only telegram.bot-2.1.0/telegram.bot/vignettes/telegrambot-custom-filters.Rmd |only telegram.bot-2.2.0/telegram.bot/DESCRIPTION | 12 telegram.bot-2.2.0/telegram.bot/MD5 | 198 +- telegram.bot-2.2.0/telegram.bot/NAMESPACE | 20 telegram.bot-2.2.0/telegram.bot/NEWS.md | 25 telegram.bot-2.2.0/telegram.bot/R/base.R |only telegram.bot-2.2.0/telegram.bot/R/basefilter.R |only telegram.bot-2.2.0/telegram.bot/R/bot.R | 663 +++++----- telegram.bot-2.2.0/telegram.bot/R/callbackqueryhandler.R | 4 telegram.bot-2.2.0/telegram.bot/R/commandhandler.R | 57 telegram.bot-2.2.0/telegram.bot/R/dispatcher.R | 79 - telegram.bot-2.2.0/telegram.bot/R/errorhandler.R |only telegram.bot-2.2.0/telegram.bot/R/filters.R |only telegram.bot-2.2.0/telegram.bot/R/handler.R | 23 telegram.bot-2.2.0/telegram.bot/R/inlinequeryresult.R | 20 telegram.bot-2.2.0/telegram.bot/R/messagehandler.R | 6 telegram.bot-2.2.0/telegram.bot/R/replymarkup.R | 96 - telegram.bot-2.2.0/telegram.bot/R/telegram.bot-package.R | 21 telegram.bot-2.2.0/telegram.bot/R/update.R | 146 +- telegram.bot-2.2.0/telegram.bot/R/updater.R | 98 - telegram.bot-2.2.0/telegram.bot/R/utils.R | 38 telegram.bot-2.2.0/telegram.bot/README.md | 51 telegram.bot-2.2.0/telegram.bot/build/vignette.rds |binary telegram.bot-2.2.0/telegram.bot/inst/doc/telegrambot-advanced-filters.R |only telegram.bot-2.2.0/telegram.bot/inst/doc/telegrambot-advanced-filters.Rmd |only telegram.bot-2.2.0/telegram.bot/inst/doc/telegrambot-advanced-filters.html |only telegram.bot-2.2.0/telegram.bot/inst/doc/telegrambot-basic-functionalities.R | 34 telegram.bot-2.2.0/telegram.bot/inst/doc/telegrambot-basic-functionalities.Rmd | 36 telegram.bot-2.2.0/telegram.bot/inst/doc/telegrambot-basic-functionalities.html | 34 telegram.bot-2.2.0/telegram.bot/inst/doc/telegrambot-building-a-bot.R | 27 telegram.bot-2.2.0/telegram.bot/inst/doc/telegrambot-building-a-bot.Rmd | 43 telegram.bot-2.2.0/telegram.bot/inst/doc/telegrambot-building-a-bot.html | 28 telegram.bot-2.2.0/telegram.bot/inst/doc/telegrambot-introduction.R | 20 telegram.bot-2.2.0/telegram.bot/inst/doc/telegrambot-introduction.Rmd | 26 telegram.bot-2.2.0/telegram.bot/inst/doc/telegrambot-introduction.html | 20 telegram.bot-2.2.0/telegram.bot/inst/doc/telegrambot-set-a-proxy.R |only telegram.bot-2.2.0/telegram.bot/inst/doc/telegrambot-set-a-proxy.Rmd |only telegram.bot-2.2.0/telegram.bot/inst/doc/telegrambot-set-a-proxy.html |only telegram.bot-2.2.0/telegram.bot/inst/doc/telegrambot-the-add-operator.R |only telegram.bot-2.2.0/telegram.bot/inst/doc/telegrambot-the-add-operator.Rmd |only telegram.bot-2.2.0/telegram.bot/inst/doc/telegrambot-the-add-operator.html |only telegram.bot-2.2.0/telegram.bot/man/BaseFilter.Rd |only telegram.bot-2.2.0/telegram.bot/man/Bot.Rd | 44 telegram.bot-2.2.0/telegram.bot/man/CallbackQueryHandler.Rd | 2 telegram.bot-2.2.0/telegram.bot/man/CommandHandler.Rd | 29 telegram.bot-2.2.0/telegram.bot/man/Dispatcher.Rd | 7 telegram.bot-2.2.0/telegram.bot/man/ErrorHandler.Rd |only telegram.bot-2.2.0/telegram.bot/man/ForceReply.Rd | 6 telegram.bot-2.2.0/telegram.bot/man/Handler.Rd | 10 telegram.bot-2.2.0/telegram.bot/man/InlineKeyboardButton.Rd | 13 telegram.bot-2.2.0/telegram.bot/man/InlineKeyboardMarkup.Rd | 8 telegram.bot-2.2.0/telegram.bot/man/InlineQueryResult.Rd | 13 telegram.bot-2.2.0/telegram.bot/man/KeyboardButton.Rd | 13 telegram.bot-2.2.0/telegram.bot/man/MessageFilters.Rd | 8 telegram.bot-2.2.0/telegram.bot/man/MessageHandler.Rd | 2 telegram.bot-2.2.0/telegram.bot/man/ReplyKeyboardMarkup.Rd | 10 telegram.bot-2.2.0/telegram.bot/man/ReplyKeyboardRemove.Rd | 6 telegram.bot-2.2.0/telegram.bot/man/TelegramObject-add.Rd |only telegram.bot-2.2.0/telegram.bot/man/TelegramObject.Rd |only telegram.bot-2.2.0/telegram.bot/man/Update.Rd | 15 telegram.bot-2.2.0/telegram.bot/man/Updater.Rd | 35 telegram.bot-2.2.0/telegram.bot/man/add_error_handler.Rd | 25 telegram.bot-2.2.0/telegram.bot/man/add_handler.Rd | 12 telegram.bot-2.2.0/telegram.bot/man/answerCallbackQuery.Rd | 12 telegram.bot-2.2.0/telegram.bot/man/answerInlineQuery.Rd | 18 telegram.bot-2.2.0/telegram.bot/man/bot_token.Rd | 8 telegram.bot-2.2.0/telegram.bot/man/check_update.Rd | 2 telegram.bot-2.2.0/telegram.bot/man/clean_updates.Rd | 2 telegram.bot-2.2.0/telegram.bot/man/deleteMessage.Rd | 6 telegram.bot-2.2.0/telegram.bot/man/deleteWebhook.Rd | 2 telegram.bot-2.2.0/telegram.bot/man/editMessageReplyMarkup.Rd | 8 telegram.bot-2.2.0/telegram.bot/man/effective_chat.Rd | 2 telegram.bot-2.2.0/telegram.bot/man/effective_message.Rd | 2 telegram.bot-2.2.0/telegram.bot/man/effective_user.Rd | 2 telegram.bot-2.2.0/telegram.bot/man/filtersLogic.Rd |only telegram.bot-2.2.0/telegram.bot/man/forwardMessage.Rd | 10 telegram.bot-2.2.0/telegram.bot/man/from_chat_id.Rd |only telegram.bot-2.2.0/telegram.bot/man/from_user_id.Rd |only telegram.bot-2.2.0/telegram.bot/man/getFile.Rd | 27 telegram.bot-2.2.0/telegram.bot/man/getMe.Rd | 2 telegram.bot-2.2.0/telegram.bot/man/getUpdates.Rd | 6 telegram.bot-2.2.0/telegram.bot/man/getUserProfilePhotos.Rd | 16 telegram.bot-2.2.0/telegram.bot/man/getWebhookInfo.Rd | 2 telegram.bot-2.2.0/telegram.bot/man/handle_update.Rd | 2 telegram.bot-2.2.0/telegram.bot/man/leaveChat.Rd | 4 telegram.bot-2.2.0/telegram.bot/man/sendAnimation.Rd | 24 telegram.bot-2.2.0/telegram.bot/man/sendAudio.Rd | 24 telegram.bot-2.2.0/telegram.bot/man/sendChatAction.Rd | 10 telegram.bot-2.2.0/telegram.bot/man/sendDocument.Rd | 18 telegram.bot-2.2.0/telegram.bot/man/sendLocation.Rd | 16 telegram.bot-2.2.0/telegram.bot/man/sendMessage.Rd | 20 telegram.bot-2.2.0/telegram.bot/man/sendPhoto.Rd | 18 telegram.bot-2.2.0/telegram.bot/man/sendSticker.Rd | 14 telegram.bot-2.2.0/telegram.bot/man/sendVideo.Rd | 26 telegram.bot-2.2.0/telegram.bot/man/sendVideoNote.Rd | 18 telegram.bot-2.2.0/telegram.bot/man/sendVoice.Rd | 22 telegram.bot-2.2.0/telegram.bot/man/setWebhook.Rd | 4 telegram.bot-2.2.0/telegram.bot/man/set_token.Rd | 4 telegram.bot-2.2.0/telegram.bot/man/start_polling.Rd | 12 telegram.bot-2.2.0/telegram.bot/man/stop_polling.Rd | 9 telegram.bot-2.2.0/telegram.bot/man/telegram.bot.Rd | 31 telegram.bot-2.2.0/telegram.bot/man/user_id.Rd | 8 telegram.bot-2.2.0/telegram.bot/vignettes/telegrambot-advanced-filters.Rmd |only telegram.bot-2.2.0/telegram.bot/vignettes/telegrambot-basic-functionalities.Rmd | 36 telegram.bot-2.2.0/telegram.bot/vignettes/telegrambot-building-a-bot.Rmd | 43 telegram.bot-2.2.0/telegram.bot/vignettes/telegrambot-introduction.Rmd | 26 telegram.bot-2.2.0/telegram.bot/vignettes/telegrambot-set-a-proxy.Rmd |only telegram.bot-2.2.0/telegram.bot/vignettes/telegrambot-the-add-operator.Rmd |only 116 files changed, 1507 insertions(+), 1092 deletions(-)
Title: Store Data About Rows
Description: Tools for keeping track of information, named "keys", about rows of
data frame like objects. This is done by creating special attribute "keys"
which is updated after every change in rows (subsetting, ordering, etc.).
This package is designed to work tightly with 'dplyr' package.
Author: Evgeni Chasnovski [aut, cre]
Maintainer: Evgeni Chasnovski <evgeni.chasnovski@gmail.com>
Diff between keyholder versions 0.1.2 dated 2018-05-19 and 0.1.3 dated 2018-12-01
DESCRIPTION | 10 +- MD5 | 14 ++-- NEWS.md | 4 + R/keys-manip.R | 18 +++-- R/keys-set.R | 10 ++ inst/doc/introduction.html | 98 ++++++++++++++-------------- man/reexports.Rd | 1 tests/testthat/test-keyed-df-one-tbl.R | 113 +++++++++++++++++---------------- 8 files changed, 146 insertions(+), 122 deletions(-)
Title: Tests on Properties of Space-Time Covariance Functions
Description: Tests on properties of space-time covariance functions.
Tests on symmetry, separability and for assessing
different forms of non-separability are available. Moreover tests on
some classes of covariance functions, such that the classes of
product-sum models, Gneiting models and integrated product models have
been provided.
Author: Sandra De Iaco [aut, cre],
Claudia Cappello [aut],
Donato Posa [aut],
Sabrina Maggio [ctb]
Maintainer: Sandra De Iaco <sandra.deiaco@unisalento.it>
Diff between covatest versions 1.0.1 dated 2018-08-29 and 1.1.0 dated 2018-12-01
covatest-1.0.1/covatest/R/dataprep.R |only covatest-1.0.1/covatest/inst/extdata/PM10data.txt |only covatest-1.0.1/covatest/man/dataprep.Rd |only covatest-1.1.0/covatest/DESCRIPTION | 13 - covatest-1.1.0/covatest/MD5 | 42 +-- covatest-1.1.0/covatest/NAMESPACE | 4 covatest-1.1.0/covatest/R/blocks.R | 129 +++++++---- covatest-1.1.0/covatest/R/couples.R | 159 ++++++++----- covatest-1.1.0/covatest/R/covablocks.R | 111 +++++++-- covatest-1.1.0/covatest/R/covaprop.R | 41 +-- covatest-1.1.0/covatest/R/covastat.R | 196 +++++++++++++---- covatest-1.1.0/covatest/R/covastatM.R | 187 +++++++++++++--- covatest-1.1.0/covatest/R/read.STdata.R |only covatest-1.1.0/covatest/R/sepindex.R | 10 covatest-1.1.0/covatest/R/vv_13.R | 5 covatest-1.1.0/covatest/inst/extdata/file_date.txt |only covatest-1.1.0/covatest/inst/extdata/file_datetime.txt |only covatest-1.1.0/covatest/inst/extdata/file_yq.txt |only covatest-1.1.0/covatest/man/blocks-class.Rd | 8 covatest-1.1.0/covatest/man/couples-class.Rd | 40 +-- covatest-1.1.0/covatest/man/covablocks-class.Rd | 6 covatest-1.1.0/covatest/man/covaprop-class.Rd | 9 covatest-1.1.0/covatest/man/covastat-class.Rd | 11 covatest-1.1.0/covatest/man/covastatM-class.Rd | 10 covatest-1.1.0/covatest/man/read.STdata.Rd |only covatest-1.1.0/covatest/man/vv_13.Rd | 5 26 files changed, 688 insertions(+), 298 deletions(-)
Title: A Tool for Downloading Functional Traits Data for Plant Species
Description: Plant ecologists often need to collect "traits" data
about plant species which are often scattered among various
databases: TR8 contains a set of tools which take care of
automatically retrieving some of those functional traits data
for plant species from publicly available databases (Biolflor,
The Ecological Flora of the British Isles, LEDA traitbase, Ellenberg
values for Italian Flora, Mycorrhizal intensity databases, Catminat, BROT,
PLANTS, Jepson Flora Project).
The TR8 name, inspired by "car plates" jokes, was chosen since
it both reminds of the main object of the package and is
extremely short to type.
Author: Gionata Bocci <boccigionata@gmail.com>
Maintainer: Gionata Bocci <boccigionata@gmail.com>
Diff between TR8 versions 0.9.18 dated 2017-09-14 and 0.9.19 dated 2018-12-01
TR8-0.9.18/TR8/vignettes/temp.ps |only TR8-0.9.19/TR8/DESCRIPTION | 8 ++--- TR8-0.9.19/TR8/MD5 | 45 ++++++++++++++---------------- TR8-0.9.19/TR8/R/TR8-package.R | 4 +- TR8-0.9.19/TR8/R/biolflor.R | 7 ++-- TR8-0.9.19/TR8/R/generate_biolflor_lu.R | 6 ++-- TR8-0.9.19/TR8/build/vignette.rds |binary TR8-0.9.19/TR8/data/available_tr8.rda |binary TR8-0.9.19/TR8/data/biolflor_lookup.rda |binary TR8-0.9.19/TR8/data/column_list.rda |binary TR8-0.9.19/TR8/data/imkerbond_data.rda |binary TR8-0.9.19/TR8/data/leda_lookup.rda |binary TR8-0.9.19/TR8/data/pignatti.rda |binary TR8-0.9.19/TR8/data/ref_PLANTS.rda |binary TR8-0.9.19/TR8/data/traits_Biolflor.rda |binary TR8-0.9.19/TR8/data/traits_eco.rda |binary TR8-0.9.19/TR8/inst/doc/Expanding_TR8.pdf |binary TR8-0.9.19/TR8/inst/doc/TR8.Rnw | 4 +- TR8-0.9.19/TR8/inst/doc/TR8.pdf |binary TR8-0.9.19/TR8/inst/doc/TR8_workflow.pdf |binary TR8-0.9.19/TR8/man/TR8-package.Rd | 4 +- TR8-0.9.19/TR8/man/biolflor_lookup.Rd | 6 ++-- TR8-0.9.19/TR8/man/tr8.Rd | 2 - TR8-0.9.19/TR8/vignettes/TR8.Rnw | 4 +- 24 files changed, 44 insertions(+), 46 deletions(-)
Title: A GraphQL Query Parser
Description: Bindings to the 'libgraphqlparser' C++ library. Parses GraphQL syntax
and exports the AST in JSON format.
Author: Jeroen Ooms [cre, aut],
Barret Schloerke [ctb],
Scott Wolchok [ctb],
Facebook, Inc [aut, cph] (libgraphqlparser C++ library)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between graphql versions 1.4 dated 2017-09-05 and 1.5 dated 2018-12-01
DESCRIPTION | 12 LICENSE | 2 MD5 | 70 NEWS | 5 src/Makevars | 4 src/dump_json_ast.cpp | 2 src/libgraphqlparser/Ast.cpp | 87 - src/libgraphqlparser/Ast.h | 81 - src/libgraphqlparser/AstNode.h | 10 src/libgraphqlparser/AstVisitor.h | 7 src/libgraphqlparser/GraphQLParser.cpp | 15 src/libgraphqlparser/GraphQLParser.h | 6 src/libgraphqlparser/JsonVisitor.cpp | 64 src/libgraphqlparser/JsonVisitor.cpp.inc | 7 src/libgraphqlparser/JsonVisitor.h | 8 src/libgraphqlparser/JsonVisitor.h.inc | 7 src/libgraphqlparser/c/GraphQLAst.cpp | 241 +-- src/libgraphqlparser/c/GraphQLAst.h | 7 src/libgraphqlparser/c/GraphQLAstForEachConcreteType.h | 7 src/libgraphqlparser/c/GraphQLAstNode.cpp | 12 src/libgraphqlparser/c/GraphQLAstNode.h | 8 src/libgraphqlparser/c/GraphQLAstToJSON.cpp | 10 src/libgraphqlparser/c/GraphQLAstToJSON.h | 6 src/libgraphqlparser/c/GraphQLAstVisitor.cpp | 16 src/libgraphqlparser/c/GraphQLAstVisitor.h | 10 src/libgraphqlparser/c/GraphQLParser.cpp | 18 src/libgraphqlparser/c/GraphQLParser.h | 6 src/libgraphqlparser/lexer.cpp | 808 ++++++----- src/libgraphqlparser/lexer.h | 192 ++ src/libgraphqlparser/lexer.lpp | 131 + src/libgraphqlparser/location.hh | 12 src/libgraphqlparser/parser.tab.cpp | 1228 ++++++++--------- src/libgraphqlparser/parser.tab.hpp | 16 src/libgraphqlparser/position.hh | 12 src/libgraphqlparser/stack.hh | 12 src/libgraphqlparser/syntaxdefs.h | 8 36 files changed, 1810 insertions(+), 1337 deletions(-)
Title: High Performance CommonMark and Github Markdown Rendering in R
Description: The CommonMark specification defines a rationalized version of markdown
syntax. This package uses the 'cmark' reference implementation for converting
markdown text into various formats including html, latex and groff man. In
addition it exposes the markdown parse tree in xml format. Also includes opt-in
support for GFM extensions including tables, autolinks, and strikethrough text.
Author: Jeroen Ooms [aut, cre],
John MacFarlane [cph] (Author of cmark)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between commonmark versions 1.6 dated 2018-09-30 and 1.7 dated 2018-12-01
DESCRIPTION | 10 ++++---- MD5 | 32 +++++++++++++++------------- NEWS | 4 +++ src/Makevars | 4 ++- src/cmark/cmark-gfm.h | 16 +++++++------- src/cmark/cmark-gfm_version.h | 4 +-- src/cmark/html.c | 8 +++---- src/cmark/inlines.c | 2 - src/cmark/main.c | 6 ++--- src/cmark/plaintext.c | 22 +++++++++++++++++++ src/config.h | 46 +++++++++++++++++++++++++++++++++++++++++ src/extensions.c | 4 +-- src/extensions/autolink.c | 16 ++++++++------ src/extensions/strikethrough.c | 5 +++- src/init.c | 1 src/wrapper.c | 43 ++++++++++++++++++++------------------ tests |only 17 files changed, 155 insertions(+), 68 deletions(-)
Title: Markov Regime Switching Copula Models Estimation and Goodness of
Fit
Description: R functions to estimate and perform goodness of fit test for several
Markov regime switching and mixture bivariate copula models.
The goodness of fit test is based on a Cramer von Mises statistic and
uses the Rosenblatt transform and parametric bootstrap to estimate the p-value.
The estimation of the copula parameters are based on the pseudo-maximum likelihood
method using pseudo-observations defined as normalized ranks.
Author: Mamadou Yamar Thioub <mamadou-yamar.thioub@hec.ca>,
Bouchra Nasri <bouchra.nasri@mail.mcgill.ca>,
Romanic Pieugueu <romanic.pieugueu@gerad.ca>, and
Bruno Remillard <bruno.remillard@hec.ca>
Maintainer: Mamadou Yamar Thioub <mamadou-yamar.thioub@hec.ca>
Diff between HMMcopula versions 1.0.2 dated 2018-11-14 and 1.0.3 dated 2018-12-01
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/EstHMMCop.R | 25 ++++++++++++++----------- R/SimHMMCop.R | 2 +- man/EstHMMCop.Rd | 2 +- man/SimHMMCop.Rd | 2 +- 6 files changed, 25 insertions(+), 22 deletions(-)
Title: Analysis of High-Dimensional Categorical Data Such as SNP Data
Description: Tools for the analysis of high-dimensional data developed/implemented
at the group "Statistical Complexity Reduction In Molecular Epidemiology" (SCRIME).
Main focus is on SNP data. But most of the functions can also be applied to other
types of categorical data.
Author: Holger Schwender, with a contribution of Arno Fritsch
Maintainer: Holger Schwender <holger.schw@gmx.de>
Diff between scrime versions 1.3.3 dated 2013-09-01 and 1.3.5 dated 2018-12-01
DESCRIPTION | 13 +++++++------ MD5 | 10 +++++----- NAMESPACE | 8 +++++++- R/buildSNPannotation.R | 10 +++++----- R/fblr.R | 4 ++-- R/fblr.weight.R | 4 ++-- 6 files changed, 28 insertions(+), 21 deletions(-)
Title: Create Cartograms with R
Description: Construct continuous and non-contiguous area cartograms.
Author: Sebastian Jeworutzki [aut, cre]
(<https://orcid.org/0000-0002-2671-5253>),
Timothee Giraud [ctb],
Nicolas Lambert [ctb],
Roger Bivand [cph],
Edzer Pebesma [cph],
Jakub Nowosad [ctb] (<https://orcid.org/0000-0002-1057-3721>)
Maintainer: Sebastian Jeworutzki <sebastian.jeworutzki@ruhr-uni-bochum.de>
Diff between cartogram versions 0.1.0 dated 2018-06-21 and 0.1.1 dated 2018-12-01
DESCRIPTION | 8 +- MD5 | 12 ++-- NEWS | 3 - R/cartogram_cont.R | 138 +++++++++++++++++++++++------------------------ README.md | 5 + man/cartogram_cont.Rd | 9 +-- man/checkPolygonsGEOS.Rd | 3 - 7 files changed, 92 insertions(+), 86 deletions(-)
Title: Limited Memory BFGS Minimizer with Bounds on Parameters with
optim() 'C' Interface
Description: Interfacing to Nocedal et al. L-BFGS-B.3.0 (2011 <doi:10.1145/2049662.2049669>) limited
memory BFGS minimizer with bounds on parameters. This is a fork of 'lbfgsb3'. This
registers a 'R' compatible 'C' interface to L-BFGS-B.3.0 that uses the same function types
and optimization as the optim() function (see writing 'R' extensions and source for
details). Ths package also adds more stopping criterion as well as allows adjusting more tolerances.
Author: Matthew L Fidler [aut, cre],
John C Nash [aut],
Ciyou Zhu [aut],
Richard Byrd [aut],
Jorge Nocedal [aut],
Jose Luis Morales [aut]
Maintainer: Matthew L Fidler <matthew.fidler@gmail.com>
Diff between lbfgsb3c versions 2018-2.13 dated 2018-10-19 and 2018-2.13-1 dated 2018-12-01
DESCRIPTION | 8 LICENSE.note | 62 MD5 | 37 NAMESPACE | 12 NEWS | 16 R/RcppExports.R | 14 R/lbfgsb3.R | 330 - README.md | 22 inst/License-lbfgsb-orig.txt | 142 inst/drlbfgsb3.R | 38 inst/include/lbfgsb3c.h | 58 inst/lbfgsb140731.f | 8014 +++++++++++++++++++++--------------------- man/lbfgsb3c.Rd | 298 - src/lbfgsb3c.cpp | 155 tests/testthat.R | 8 tests/testthat/test-bounds.R | 50 tests/testthat/test-broydt.R | 506 +- tests/testthat/test-cyq.R | 226 - tests/testthat/test-genrose.R | 104 tests/testthat/test-watson.R |only 20 files changed, 5084 insertions(+), 5016 deletions(-)
Title: Quality Control Charts for 'ggplot'
Description: Plot single and faceted type quality control charts
for 'ggplot'.
Author: Kenith Grey
Maintainer: Kenith Grey <kenithgrey@r-bar.net>
Diff between ggQC versions 0.0.3 dated 2018-11-20 and 0.0.31 dated 2018-12-01
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- R/04_stat_qc.R | 7 ++++--- R/04_stat_qc_violations.r | 29 +++++++++++++++-------------- inst/doc/XbarR_HOTTO.html | 4 ++-- inst/doc/XmR_HOWTO.html | 4 ++-- man/QC_Capability.Rd | 2 +- man/capability.summary.Rd | 2 +- man/stat_QC.Rd | 6 +++--- man/stat_QC_labels.Rd | 4 ++-- man/stat_qc_violations.Rd | 8 ++++---- 11 files changed, 47 insertions(+), 45 deletions(-)
Title: To Inspect and Manipulate Data; and to Keep Track of This
Process
Description: Functions to work with data frames to prepare data for further analysis.
The functions for imputation, encoding, partitioning, and other manipulation can produce log files to keep track of process.
Author: Sherry Zhao
Maintainer: Sherry Zhao <sxzhao@gwu.edu>
Diff between cleandata versions 0.2.0 dated 2018-09-14 and 0.3.0 dated 2018-12-01
DESCRIPTION | 12 ++++++------ LICENSE | 4 ++-- MD5 | 28 +++++++++++++++------------- NAMESPACE | 2 +- R/encoders.R | 18 +++++++++--------- R/imputers.R | 20 ++++++++++---------- R/internal.R | 17 ++++++++++++----- R/others.R |only R/partitioners.R | 6 +++--- inst/doc/Demo.html | 30 +++++++++++++++++------------- man/encode_binary.Rd | 4 ++-- man/encode_onehot.Rd | 5 +++-- man/encode_ordinal.Rd | 5 +++-- man/impute.Rd | 10 +++++----- man/partition_random.Rd | 8 ++++---- man/wh_dict.Rd |only 16 files changed, 92 insertions(+), 77 deletions(-)