Title: Locate Trans and Intersex-Friendly Toilets
Description: Access the 'Refuge' API, a web-application for locating trans and
intersex-friendly restrooms, including unisex and accessible restrooms.
Includes data on the location of restrooms, along with directions,
comments, user ratings and amenities. Coverage is global, but data is
most comprehensive in the United States.
See <https://www.refugerestrooms.org/api/docs/> for full API documentation.
Author: Evan Odell [aut, cre] (<https://orcid.org/0000-0003-1845-808X>)
Maintainer: Evan Odell <evanodell91@gmail.com>
Diff between refuge versions 0.3.0 dated 2018-12-03 and 0.3.2 dated 2018-12-03
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS.md | 4 ++++ R/search.R | 2 +- R/utils-tidy.R | 2 +- README.md | 14 +++++++++----- tests/testthat/test-all-restrooms.R | 7 +++++++ tests/testthat/test-dates.R | 5 ++++- tests/testthat/test-location.R | 9 +++++++++ tests/testthat/test-search.R | 6 ++++++ 10 files changed, 53 insertions(+), 20 deletions(-)
More information about ParBayesianOptimization at CRAN
Permanent link
Title: Nonparametric Estimation and Inference Procedures using
Partitioning-Based Least Squares Regression
Description: Tools for statistical analysis using partitioning-based least squares regression as described in Cattaneo, Farrell and Feng (2018) <arXiv:1804.04916>. lsprobust() for nonparametric point estimation of regression functions and derivatives thereof, and for robust bias-corrected (pointwise and uniform) inference procedures. lspkselect() for data-driven procedure for selecting the IMSE-optimal number of knots. lsprobust.plot() for regression plots with robust confidence intervals and confidence bands. lsplincom() for estimation and inference for linear combinations of regression functions from different groups.
Author: Matias D. Cattaneo, Max H. Farrell, Yingjie Feng
Maintainer: Yingjie Feng <yjfeng@umich.edu>
Diff between lspartition versions 0.1 dated 2018-04-19 and 0.2 dated 2018-12-03
DESCRIPTION | 10 MD5 | 24 +- NAMESPACE | 5 R/lspartition-package.R | 7 R/lspfunctions.R | 535 ++++++++++++++++++++++++----------------------- R/lspkselect.R | 22 - R/lsplincom.R | 96 +++++--- R/lsprobust.R | 543 +++++++++++++++++++++++++++++------------------- R/lsprobust.plot.R | 77 +++++- man/lspkselect.Rd | 10 man/lsplincom.Rd | 28 +- man/lsprobust.Rd | 59 ++--- man/lsprobust.plot.Rd | 8 13 files changed, 821 insertions(+), 603 deletions(-)
Title: Eye-Tracking Data Analysis
Description: A set of tools that address tasks along the pipeline from raw
data to analysis and visualization for eye-tracking data. Offers several
popular types of analyses, including linear and growth curve time analyses,
onset-contingent reaction time analyses, as well as several non-parametric
bootstrapping approaches.
Author: Jacob Dink [aut, cre],
Brock Ferguson [aut]
Maintainer: Jacob Dink <jacobwdink@gmail.com>
Diff between eyetrackingR versions 0.1.7 dated 2018-02-14 and 0.1.8 dated 2018-12-03
DESCRIPTION | 10 MD5 | 46 - NEWS.md | 3 R/data_prep.R | 8 R/helpers.R | 22 R/onset_contingent_data.R | 14 build/vignette.rds |binary inst/doc/divergence_vignette.html | 759 +++++++++++++++-------- inst/doc/growth_curve_analysis_vignette.html | 589 +++++++++++------ inst/doc/onset_contingent_analysis_vignette.R | 3 inst/doc/onset_contingent_analysis_vignette.Rmd | 3 inst/doc/onset_contingent_analysis_vignette.html | 494 ++++++++++---- inst/doc/preparing_your_data_vignette.html | 626 ++++++++++++------ inst/doc/window_analysis_vignette.html | 711 ++++++++++++++------- man/analyze_time_bins.Rd | 7 man/analyze_time_clusters.Rd | 4 man/clean_by_trackloss.Rd | 5 man/make_boot_splines_data.Rd | 8 man/make_eyetrackingr_data.Rd | 4 man/make_onset_data.Rd | 7 man/make_time_sequence_data.Rd | 3 man/plot.time_sequence_data.Rd | 4 man/plot.time_window_data.Rd | 4 vignettes/onset_contingent_analysis_vignette.Rmd | 3 24 files changed, 2206 insertions(+), 1131 deletions(-)
Title: Authoring Books and Technical Documents with R Markdown
Description: Output formats and utilities for authoring books and technical documents with R Markdown.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
JJ Allaire [ctb],
Albert Kim [ctb],
Alessandro Samuel-Rosa [ctb],
Andrzej Oles [ctb],
Bastiaan Quast [ctb],
Ben Marwick [ctb],
Chester Ismay [ctb],
Christophe Dervieux [ctb],
Clifton Franklund [ctb],
Daniel Emaasit [ctb],
David Shuman [ctb],
Dean Attali [ctb],
Drew Tyre [ctb],
Ellis Valentiner [ctb],
Frans van Dunne [ctb],
Hadley Wickham [ctb],
Jeff Allen [ctb],
Jennifer Bryan [ctb],
Jonathan McPhers [ctb],
Junwen Huang [ctb],
Kevin Cheung [ctb],
Kevin Ushey [ctb],
Kim Seonghyun [ctb],
Kirill Muller [ctb],
Luciano Selzer [ctb],
Matthew Lincoln [ctb],
Maximilian Held [ctb],
Michael Sachs [ctb],
Michal Bojanowski [ctb],
Noam Ross [ctb],
Peter Hickey [ctb],
Sahir Bhatnagar [ctb],
Steve Simpson [ctb],
Thierry Onkelinx [ctb] (<https://orcid.org/0000-0001-8804-4216>),
Vincent Fulco [ctb],
Yixuan Qiu [ctb],
Zhuoer Dong [ctb],
RStudio Inc [cph],
Bartek Szopka [ctb] (The jQuery Highlight plugin),
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/resources/AUTHORS),
MathQuill contributors [ctb] (The MathQuill library; authors listed in
inst/resources/AUTHORS),
FriendCode Inc [cph, ctb] (The gitbook style, with modifications)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between bookdown versions 0.7 dated 2018-02-18 and 0.8 dated 2018-12-03
DESCRIPTION | 19 ++- MD5 | 52 +++++----- NAMESPACE | 1 NEWS.md | 34 ++++++ R/ebook.R | 23 ++-- R/gitbook.R | 50 +++++---- R/html.R | 106 +++++++++++++++------ R/latex.R | 9 - R/render.R | 11 +- R/utils.R | 78 ++++++++++----- README.md | 2 inst/resources/gitbook/css/plugin-bookdown.css | 4 inst/resources/gitbook/css/plugin-fontsettings.css | 3 inst/resources/gitbook/css/plugin-table.css |only inst/resources/gitbook/css/style.css | 2 inst/resources/gitbook/js/plugin-bookdown.js | 12 ++ inst/resources/gitbook/js/plugin-search.js | 12 ++ inst/scripts/render_one.R | 1 inst/scripts/servr.R | 9 + inst/templates/gitbook.html | 10 - man/bookdown_site.Rd | 4 man/epub_book.Rd | 9 + man/gitbook.Rd | 18 ++- man/pdf_book.Rd | 8 - man/render_book.Rd | 4 man/resolve_refs_html.Rd |only man/serve_book.Rd | 6 - tests/testit/test-utils.R | 7 + 28 files changed, 349 insertions(+), 145 deletions(-)
Title: Mining Association Rules and Frequent Itemsets
Description: Provides the infrastructure for representing,
manipulating and analyzing transaction data and patterns (frequent
itemsets and association rules). Also provides
C implementations of the association mining algorithms Apriori and Eclat.
Author: Michael Hahsler [aut, cre, cph],
Christian Buchta [aut, cph],
Bettina Gruen [aut, cph],
Kurt Hornik [aut, cph],
Ian Johnson [ctb, cph],
Christian Borgelt [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between arules versions 1.6-1 dated 2018-04-06 and 1.6-2 dated 2018-12-03
DESCRIPTION | 18 ++++++++---------- MD5 | 30 ++++++++++++++++-------------- NEWS.md | 13 +++++++++++++ R/discretize.R | 49 +++++++++++++++++++++++++++---------------------- R/dissimilarity.R | 19 ++++++++++--------- R/transactions.R | 6 ++++-- README.md | 7 +++++++ build/vignette.rds |binary inst/doc/arules.pdf |binary man/discretize.Rd | 16 +++++++++++++--- src/matrix.c | 11 ++++++----- src/newS4object.c |only src/newS4object.h |only src/rapriori.c | 35 +++++++++++++++++++---------------- src/rapriori.h | 1 + src/similarity.c | 11 ++++++----- src/warm.c | 5 +++-- 17 files changed, 133 insertions(+), 88 deletions(-)
Title: 'NOAA' Weather Data from R
Description: Client for many 'NOAA' data sources including the 'NCDC' climate
'API' at <https://www.ncdc.noaa.gov/cdo-web/webservices/v2>, with functions for
each of the 'API' 'endpoints': data, data categories, data sets, data types,
locations, location categories, and stations. In addition, we have an interface
for 'NOAA' sea ice data, the 'NOAA' severe weather inventory, 'NOAA' Historical
Observing 'Metadata' Repository ('HOMR') data, 'NOAA' storm data via 'IBTrACS',
tornado data via the 'NOAA' storm prediction center, and more.
Author: Scott Chamberlain [aut, cre],
Brooke Anderson [ctb],
Maëlle Salmon [ctb],
Adam Erickson [ctb],
Nicholas Potter [ctb],
Joseph Stachelek [ctb],
Alex Simmons [ctb],
Karthik Ram [ctb],
Hart Edmund [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rnoaa versions 0.7.0 dated 2017-05-06 and 0.8.0 dated 2018-12-03
DESCRIPTION | 23 - LICENSE | 2 MD5 | 312 ++++++++++-------- NAMESPACE | 27 - NEWS.md | 46 ++ R/argo.R | 52 +-- R/bsw.R |only R/buoy.R | 80 ++-- R/coops.R | 22 - R/cpc.R | 66 +++ R/ersst.R | 11 R/gefs.R | 23 - R/ghcnd.R | 127 +++++-- R/globals.R | 5 R/homr.R | 13 R/homr_definitions.R | 14 R/isd.R | 14 R/isd_stations.R | 3 R/isd_stations_search.R | 20 - R/lcd.R |only R/meteo-autoplot.R | 12 R/meteo_distance.R | 4 R/ncdc.r | 60 ++- R/ncdc_add_units.R |only R/ncdc_datacats.r | 10 R/ncdc_datasets.r | 3 R/ncdc_datatypes.r | 7 R/ncdc_locs.r | 7 R/ncdc_locs_cats.r | 7 R/ncdc_stations.r | 9 R/onload.R | 10 R/rnoaa-package.r | 12 R/seaice.r | 2 R/storm_events.R |only R/storm_shp.R | 14 R/storms.R | 15 R/swdi.r | 128 ++++--- R/tornadoes.R | 14 R/units-annual.R |only R/units-ghcnd.R |only R/units-gsom.R |only R/units-gsoy.R |only R/units-normal_ann.R |only R/units-normal_dly.R |only R/units-normal_hly.R |only R/units-normal_mly.R |only R/units-precip_15.R |only R/units-precip_hly.R |only R/vis_miss.R | 2 R/zzz.r | 48 +- README.md | 131 ++++--- build/vignette.rds |binary inst/doc/buoy_vignette.Rmd | 66 +-- inst/doc/buoy_vignette.html | 66 +-- inst/doc/homr_vignette.Rmd | 83 ++-- inst/doc/homr_vignette.html | 83 ++-- inst/doc/ncdc_vignette.Rmd | 90 +---- inst/doc/ncdc_vignette.html | 102 ++--- inst/doc/ncdc_workflow.Rmd | 68 +-- inst/doc/ncdc_workflow.html | 68 +-- inst/doc/rnoaa_ropenaq.Rmd | 170 +++++---- inst/doc/rnoaa_ropenaq.html | 444 +++++++++++--------------- inst/doc/seaice_vignette.html | 4 inst/doc/storms_vignette.Rmd | 218 ++++++------ inst/doc/storms_vignette.html | 220 ++++++------ inst/doc/swdi_vignette.Rmd | 26 - inst/doc/swdi_vignette.html | 26 - inst/examples/AGE00147704.dly |only inst/extdata/buoy_station_data.rds |binary inst/vign/buoy_vignette.Rmd | 4 inst/vign/buoy_vignette.md | 66 +-- inst/vign/data/measurementsIndianapolis.RData |only inst/vign/data/stationsIndianapolis.RData |only inst/vign/figure/seaice1-1.png |binary inst/vign/figure/seaice2-1.png |binary inst/vign/figure/six-1.png |binary inst/vign/figure/unnamed-chunk-10-1.png |binary inst/vign/figure/unnamed-chunk-11-1.png |binary inst/vign/figure/unnamed-chunk-3-1.png |binary inst/vign/figure/unnamed-chunk-4-1.png |binary inst/vign/figure/unnamed-chunk-5-1.png |binary inst/vign/figure/unnamed-chunk-7-1.png |binary inst/vign/figure/unnamed-chunk-8-1.png |binary inst/vign/figure/unnamed-chunk-9-1.png |binary inst/vign/homr_vignette.md | 83 ++-- inst/vign/myfile.kmz |binary inst/vign/myfile.zip |binary inst/vign/ncdc_vignette.md | 90 +---- inst/vign/ncdc_workflow.md | 68 +-- inst/vign/rnoaa_ropenaq.Rmd | 75 ++-- inst/vign/rnoaa_ropenaq.md | 170 +++++---- inst/vign/storms_vignette.md | 218 ++++++------ inst/vign/swdi_vignette.md | 26 - man/argo.Rd | 33 - man/bsw.Rd |only man/buoy.Rd | 17 man/coops.Rd | 9 man/cpc_prcp.Rd | 27 + man/ersst.Rd | 3 man/gefs.Rd | 2 man/ghcnd.Rd | 42 +- man/ghcnd_search.Rd | 27 + man/ghcnd_states.Rd | 4 man/ghcnd_stations.Rd | 4 man/homr.Rd | 4 man/homr_definitions.Rd | 3 man/isd.Rd | 16 man/isd_read.Rd | 1 man/isd_stations.Rd | 5 man/isd_stations_search.Rd | 13 man/lcd.Rd |only man/meteo_clear_cache.Rd | 1 man/meteo_nearby_stations.Rd | 5 man/meteo_show_cache.Rd | 1 man/meteo_tidy_ghcnd.Rd | 6 man/ncdc.Rd | 41 +- man/ncdc_combine.Rd | 1 man/ncdc_datacats.Rd | 15 man/ncdc_datasets.Rd | 11 man/ncdc_datatypes.Rd | 13 man/ncdc_locs.Rd | 18 - man/ncdc_locs_cats.Rd | 15 man/ncdc_plot.Rd | 1 man/ncdc_stations.Rd | 13 man/storm_events.Rd |only man/storms.Rd | 7 man/swdi.Rd | 95 +++-- man/tornadoes.Rd | 3 tests/fixtures |only tests/testthat/helper-rnoaa.R |only tests/testthat/test-arc2.R |only tests/testthat/test-buoy.R | 2 tests/testthat/test-check_response.r | 22 - tests/testthat/test-coops.R | 58 +-- tests/testthat/test-cpc_prcp.R | 31 + tests/testthat/test-defunct.R |only tests/testthat/test-ersst.R |only tests/testthat/test-gefs.R | 5 tests/testthat/test-ghcnd.R | 38 +- tests/testthat/test-homr.R | 78 ++-- tests/testthat/test-isd_stations.R | 44 ++ tests/testthat/test-lcd.R |only tests/testthat/test-ncdc.r | 109 ++++-- tests/testthat/test-ncdc_datacats.r | 34 - tests/testthat/test-ncdc_datasets.r | 33 - tests/testthat/test-ncdc_datatypes.r | 19 - tests/testthat/test-ncdc_locs.r | 38 +- tests/testthat/test-ncdc_locs_cats.r | 51 +- tests/testthat/test-ncdc_plot.r | 3 tests/testthat/test-ncdc_stations.r | 43 +- tests/testthat/test-storm_events.R |only tests/testthat/test-storms.R | 48 +- tests/testthat/test-swdi.R |only tests/testthat/test-vis_miss.R |only tools/unnamed-chunk-13-1.png |binary tools/unnamed-chunk-14-1.png |binary vignettes/buoy_vignette.Rmd | 66 +-- vignettes/homr_vignette.Rmd | 83 ++-- vignettes/ncdc_vignette.Rmd | 90 +---- vignettes/ncdc_workflow.Rmd | 68 +-- vignettes/rnoaa_ropenaq.Rmd | 170 +++++---- vignettes/storms_vignette.Rmd | 218 ++++++------ vignettes/swdi_vignette.Rmd | 26 - 163 files changed, 3053 insertions(+), 2669 deletions(-)
Title: A Computationally Efficient Mean Shift Implementation
Description: Performs mean shift classification using linear and
k-d tree based nearest neighbor implementations for the Gaussian,
Epanechnikov, and biweight product kernels.
Author: Jonathan Lisic [aut, cre]
Maintainer: Jonathan Lisic <jlisic@gmail.com>
Diff between meanShiftR versions 0.52 dated 2018-06-25 and 0.53 dated 2018-12-03
DESCRIPTION | 9 ++++---- MD5 | 8 +++---- src/init.c | 1 src/kdtree.c | 16 +++++++++++++- src/meanShift.c | 62 +++++++++++++++++++++++++++++++++++++++++++------------- 5 files changed, 72 insertions(+), 24 deletions(-)
Title: Datasets for Spatial Analysis
Description: Diverse spatial datasets for demonstrating, benchmarking and teaching spatial data analysis.
It includes R data of class sf (defined by the package 'sf'), Spatial ('sp'), and nb ('spdep').
Unlike other spatial data packages such as 'rnaturalearth' and 'maps',
it also contains data stored in a range of file formats including GeoJSON, ESRI Shapefile and GeoPackage.
Some of the datasets are designed to illustrate specific analysis techniques.
cycle_hire() and cycle_hire_osm(), for example, is designed to illustrate point pattern analysis techniques.
Author: Roger Bivand [aut] (<https://orcid.org/0000-0003-2392-6140>),
Jakub Nowosad [aut, cre] (<https://orcid.org/0000-0002-1057-3721>),
Robin Lovelace [aut] (<https://orcid.org/0000-0001-5679-6536>),
Mark Monmonier [ctb] (author of the state.vbm dataset),
Greg Snow [ctb] (author of the state.vbm dataset)
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between spData versions 0.2.9.4 dated 2018-09-15 and 0.2.9.6 dated 2018-12-03
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- R/zzz.R | 2 +- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Filtering Algorithms for the State Space Models on the Stiefel
Manifold
Description: Provides the filtering algorithms for the state space models on the Stiefel manifold as well as the corresponding sampling algorithms for uniform, vector Langevin-Bingham and matrix Langevin-Bingham distributions on the Stiefel manifold.
Author: Yukai Yang [aut, cre]
Maintainer: Yukai Yang <yukai.yang@statistik.uu.se>
Diff between SMFilter versions 1.0.0 dated 2018-11-26 and 1.0.2 dated 2018-12-03
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NEWS.md | 10 ++++++++++ R/SMFilter.R | 2 +- R/utils.R | 5 ++--- inst/doc/readme.R | 3 +++ inst/doc/readme.Rmd | 16 +++++++++++++--- inst/doc/readme.html | 19 ++++++++++++------- man/SMFilter.Rd | 2 +- vignettes/readme.Rmd | 16 +++++++++++++--- 10 files changed, 69 insertions(+), 32 deletions(-)
Title: Dose Response Data Analysis using the 4 Parameter Logistic (4pl)
Model
Description: Models the relationship between dose levels and responses in a pharmacological experiment using the 4 Parameter Logistic model. Traditional packages on dose-response modelling such as 'drc' and 'nplr' often draw errors due to convergence failure especially when data have outliers or non-logistic shapes. This package provides robust estimation methods that are less affected by outliers and other initialization methods that work well for data lacking logistic shapes. We provide the bounds on the parameters of the 4PL model that prevent parameter estimates from diverging or converging to zero and base their justification in a statistical principle. These methods are used as remedies to convergence failure problems. Gadagkar, S. R. and Call, G. B. (2015) <doi:10.1016/j.vascn.2014.08.006> Ritz, C. and Baty, F. and Streibig, J. C. and Gerhard, D. (2015) <doi:10.1371/journal.pone.0146021>.
Author: Justin T. Landis [aut, cre],
Hyowon An [aut],
Aubrey G. Bailey [aut],
Dirk P. Dittmer [aut],
James S. Marron [aut]
Maintainer: Justin T. Landis <jtlandis314@gmail.com>
Diff between dr4pl versions 1.1.7.1 dated 2018-09-13 and 1.1.7.4 dated 2018-12-03
DESCRIPTION | 18 +++-- MD5 | 22 +++--- README.md | 2 build/partial.rdb |binary build/vignette.rds |binary data/drc_error_1.rda |binary data/drc_error_2.rda |binary data/drc_error_3.rda |binary data/drc_error_4.rda |binary inst/doc/usage_examples_HA.html | 139 +++++++++++++++++++--------------------- man/dr4pl.Rd | 5 - man/plot.dr4pl.Rd | 7 +- 12 files changed, 99 insertions(+), 94 deletions(-)
Title: Locate Trans and Intersex-Friendly Toilets
Description: Access the 'Refuge' API, a web-application for locating trans and
intersex-friendly restrooms, including unisex and accessible restrooms.
Includes data on the location of restrooms, along with directions,
comments, user ratings and amenities. Coverage is global, but data is
most comprehensive in the United States.
See <https://www.refugerestrooms.org/api/docs/> for full API documentation.
Author: Evan Odell [aut, cre] (<https://orcid.org/0000-0003-1845-808X>)
Maintainer: Evan Odell <evanodell91@gmail.com>
Diff between refuge versions 0.2.0 dated 2018-10-13 and 0.3.0 dated 2018-12-03
DESCRIPTION | 8 MD5 | 36 +- NEWS.md | 7 R/all_bathrooms.R | 10 R/bathroom_dates.R | 21 + R/location.R | 14 - R/search.R | 11 R/utils-ada.R | 2 R/utils-tidy.R | 38 +-- R/utils-unisex.R | 2 inst/doc/introduction.html | 443 ++++++++++++++++++------------------ man/rfg_all_restrooms.Rd | 2 man/rfg_date.Rd | 8 man/rfg_location.Rd | 4 man/rfg_search.Rd | 4 tests/testthat/test-all-restrooms.R | 1 tests/testthat/test-dates.R | 2 tests/testthat/test-location.R | 3 tests/testthat/test-search.R | 7 19 files changed, 329 insertions(+), 294 deletions(-)
Title: A Tool for Automating Download and Preprocessing of MODIS Land
Products Data
Description: Allows automating the creation of time series of rasters derived
from MODIS Satellite Land Products data. It performs several typical
preprocessing steps such as download, mosaicking, reprojection and resize
of data acquired on a specified time period. All processing parameters
can be set using a user-friendly GUI. Users can select which layers of
the original MODIS HDF files they want to process, which additional
Quality Indicators should be extracted from aggregated MODIS Quality
Assurance layers and, in the case of Surface Reflectance products
, which Spectral Indexes should be computed from the original reflectance
bands. For each output layer, outputs are saved as single-band raster
files corresponding to each available acquisition date. Virtual files
allowing access to the entire time series as a single file are also created.
Command-line execution exploiting a previously saved processing options
file is also possible, allowing to automatically update time series
related to a MODIS product whenever a new image is available.
Author: Lorenzo Busetto [aut, cre] (<https://orcid.org/0000-0001-9634-6038>),
Luigi Ranghetti [aut] (<https://orcid.org/0000-0001-6207-5188>),
Leah Wasser [rev] (Leah Wasser reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/184),
Jeff Hanson [rev] (Jeff Hanson reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/184)
Maintainer: Lorenzo Busetto <lbusett@gmail.com>
Diff between MODIStsp versions 1.3.6 dated 2018-07-14 and 1.3.7 dated 2018-12-03
MODIStsp-1.3.6/MODIStsp/inst/ExtData/Diff_Prodopts_131_132.xml |only MODIStsp-1.3.6/MODIStsp/inst/ExtData/Previous/MODIStsp_Previous.json |only MODIStsp-1.3.6/MODIStsp/inst/testdata/test04_aqua.json |only MODIStsp-1.3.6/MODIStsp/inst/testdata/test05_wrong_pwd.json |only MODIStsp-1.3.6/MODIStsp/inst/testdata/test08.json |only MODIStsp-1.3.6/MODIStsp/tests/testthat/test_MODIStsp.R |only MODIStsp-1.3.7/MODIStsp/DESCRIPTION | 26 +- MODIStsp-1.3.7/MODIStsp/MD5 | 116 +++++----- MODIStsp-1.3.7/MODIStsp/NEWS.md | 74 ++++-- MODIStsp-1.3.7/MODIStsp/R/MODIStsp-package.R | 10 MODIStsp-1.3.7/MODIStsp/R/MODIStsp.R | 37 +-- MODIStsp-1.3.7/MODIStsp/R/MODIStsp_GUI.R | 21 - MODIStsp-1.3.7/MODIStsp/R/MODIStsp_extract.R | 5 MODIStsp-1.3.7/MODIStsp/R/MODIStsp_process_bands.R | 66 +++-- MODIStsp-1.3.7/MODIStsp/R/MODIStsp_process_indexes.R | 3 MODIStsp-1.3.7/MODIStsp/R/MODIStsp_reset_options.R | 18 - MODIStsp-1.3.7/MODIStsp/R/gh_help.R | 7 MODIStsp-1.3.7/MODIStsp/R/gh_sellayers.R | 40 +-- MODIStsp-1.3.7/MODIStsp/R/gui_helpers.R | 5 MODIStsp-1.3.7/MODIStsp/README.md | 59 +++-- MODIStsp-1.3.7/MODIStsp/build/vignette.rds |binary MODIStsp-1.3.7/MODIStsp/inst/CITATION | 6 MODIStsp-1.3.7/MODIStsp/inst/ExtData/MODIStsp_ProdOpts.xml | 54 +++- MODIStsp-1.3.7/MODIStsp/inst/ExtData/Previous/MODIStsp_ProdOpts.RData |binary MODIStsp-1.3.7/MODIStsp/inst/WORDLIST | 8 MODIStsp-1.3.7/MODIStsp/inst/doc/MODIStsp.R | 6 MODIStsp-1.3.7/MODIStsp/inst/doc/MODIStsp.Rmd | 22 - MODIStsp-1.3.7/MODIStsp/inst/doc/MODIStsp.pdf |binary MODIStsp-1.3.7/MODIStsp/inst/testdata/test01.json | 2 MODIStsp-1.3.7/MODIStsp/inst/testdata/test01a.json |only MODIStsp-1.3.7/MODIStsp/inst/testdata/test02.json | 2 MODIStsp-1.3.7/MODIStsp/inst/testdata/test03.json | 2 MODIStsp-1.3.7/MODIStsp/inst/testdata/test03a.json |only MODIStsp-1.3.7/MODIStsp/inst/testdata/test04.json | 2 MODIStsp-1.3.7/MODIStsp/inst/testdata/test04a.json |only MODIStsp-1.3.7/MODIStsp/inst/testdata/test04b.json |only MODIStsp-1.3.7/MODIStsp/inst/testdata/test04c.json |only MODIStsp-1.3.7/MODIStsp/inst/testdata/test05.json | 4 MODIStsp-1.3.7/MODIStsp/inst/testdata/test05a.json |only MODIStsp-1.3.7/MODIStsp/inst/testdata/test06.json | 2 MODIStsp-1.3.7/MODIStsp/inst/testdata/test07.json | 2 MODIStsp-1.3.7/MODIStsp/inst/testdata/test07b.json |only MODIStsp-1.3.7/MODIStsp/inst/testdata/test_MOD10A2.json | 2 MODIStsp-1.3.7/MODIStsp/inst/testdata/test_MOD13A2.json | 2 MODIStsp-1.3.7/MODIStsp/inst/testdata/test_addindex.json | 2 MODIStsp-1.3.7/MODIStsp/inst/testdata/test_extract.json | 2 MODIStsp-1.3.7/MODIStsp/man/MODIStsp-package.Rd | 4 MODIStsp-1.3.7/MODIStsp/man/MODIStsp.Rd | 13 - MODIStsp-1.3.7/MODIStsp/man/MODIStsp_addindex.Rd | 8 MODIStsp-1.3.7/MODIStsp/man/MODIStsp_download.Rd | 6 MODIStsp-1.3.7/MODIStsp/man/MODIStsp_extract.Rd | 5 MODIStsp-1.3.7/MODIStsp/man/MODIStsp_process.Rd | 21 - MODIStsp-1.3.7/MODIStsp/man/MODIStsp_process_bands.Rd | 9 MODIStsp-1.3.7/MODIStsp/man/MODIStsp_process_indexes.Rd | 4 MODIStsp-1.3.7/MODIStsp/man/MODIStsp_vrt_create.Rd | 8 MODIStsp-1.3.7/MODIStsp/man/check_files_existence.Rd | 4 MODIStsp-1.3.7/MODIStsp/man/check_proj4string.Rd | 3 MODIStsp-1.3.7/MODIStsp/man/get_mod_filenames.Rd | 4 MODIStsp-1.3.7/MODIStsp/man/get_reqbands.Rd | 4 MODIStsp-1.3.7/MODIStsp/man/get_yeardates.Rd | 5 MODIStsp-1.3.7/MODIStsp/tests/testthat/test_MODIStsp_00.R |only MODIStsp-1.3.7/MODIStsp/tests/testthat/test_MODIStsp_01.R |only MODIStsp-1.3.7/MODIStsp/tests/testthat/test_MODIStsp_02.R |only MODIStsp-1.3.7/MODIStsp/tests/testthat/test_MODIStsp_03.R |only MODIStsp-1.3.7/MODIStsp/tests/testthat/test_MODIStsp_04.R |only MODIStsp-1.3.7/MODIStsp/tests/testthat/test_MODIStsp_05.R |only MODIStsp-1.3.7/MODIStsp/tests/testthat/test_MODIStsp_06.R |only MODIStsp-1.3.7/MODIStsp/tests/testthat/test_MODIStsp_07.R |only MODIStsp-1.3.7/MODIStsp/tests/testthat/test_MODIStsp_08.R |only MODIStsp-1.3.7/MODIStsp/vignettes/MODIStsp.Rmd | 22 - 70 files changed, 420 insertions(+), 307 deletions(-)
Title: Most Likely Transformations
Description: Likelihood-based estimation of conditional transformation
models via the most likely transformation approach described in
Hothorn et al. (2018) <DOI:10.1111/sjos.12291>.
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mlt versions 1.0-3 dated 2018-09-17 and 1.0-4 dated 2018-12-03
DESCRIPTION | 8 ++++---- MD5 | 15 ++++++++------- R/confband.R | 2 +- R/mlt.R | 8 +++++++- build/partial.rdb |binary inst/NEWS.Rd | 10 ++++++++++ tests/Rplots.pdf |only tests/bugfixes.R | 10 ++++++++++ tests/bugfixes.Rout.save | 16 +++++++++++++--- 9 files changed, 53 insertions(+), 16 deletions(-)
Title: Statistical Inference for Unsupervised Learning
Description: Test for association between the observed data
and their systematic patterns of variations.
Systematic patterns may be captured by latent variables using principal component analysis (PCA), factor analysis (FA), and related methods. The jackstraw enables statistical testing for association between observed variables and latent variables, as captured by PCs or other estimates. Similarly, unsupervised clustering, such as K-means clustering, partition around medoids (PAM), and others, finds subpopulations among the observed variables. The jackstraw estimates statistical significance of cluster membership, including unsupervised evaluation of cell identities in single cell RNA-seq. P-values and posterior probabilities allows one to rigorously evaluate the strength of cluster membership assignments.
Author: Neo Christopher Chung <nchchung@gmail.com>, John D. Storey
<jstorey@princeton.edu>, Wei Hao <whao@princeton.edu>
Maintainer: Neo Christopher Chung <nchchung@gmail.com>
Diff between jackstraw versions 1.2 dated 2018-08-07 and 1.3 dated 2018-12-03
DESCRIPTION | 20 ++++++++++---------- MD5 | 38 +++++++++++++++++++++----------------- NAMESPACE | 4 ++++ R/jackstraw_MiniBatchKmeans.R | 10 ++++++---- R/jackstraw_cluster.R | 14 ++++++++------ R/jackstraw_irlba.R |only R/jackstraw_kmeans.R | 7 +++++-- R/jackstraw_kmeanspp.R | 10 ++++++---- R/jackstraw_pam.R | 10 ++++++---- R/jackstraw_rpca.R |only README.md | 20 +++++++++++++++++++- build/vignette.rds |binary inst/doc/jackstraw.pdf |binary man/jackstraw.Rd | 5 ++--- man/jackstraw_MiniBatchKmeans.Rd | 8 +++++--- man/jackstraw_cluster.Rd | 6 ++++-- man/jackstraw_irlba.Rd |only man/jackstraw_kmeans.Rd | 6 ++++-- man/jackstraw_kmeanspp.Rd | 7 +++++-- man/jackstraw_pam.Rd | 6 ++++-- man/jackstraw_rpca.Rd |only man/jackstraw_subspace.Rd | 5 +++-- 22 files changed, 112 insertions(+), 64 deletions(-)
Title: Soil Hydraulic Properties
Description: Provides functions for (1) soil water retention (SWC) and unsaturated hydraulic conductivity (Ku) (van Genuchten-Mualem (vGM or vG) [1, 2], Peters-Durner-Iden (PDI) [3, 4, 5]), (2) fitting of parameter for SWC and/or Ku using Shuffled Complex Evolution (SCE) optimisation and (3) calculation of soil hydraulic properties (Ku and soil water contents) based on the simplified evaporation method (SEM) [6, 7].
Main references:
[1] van Genuchten (1980) <doi:10.2136/sssaj1980.03615995004400050002x>,
[2] Mualem (1976) <doi:10.1029/WR012i003p00513>,
[3] Peters (2013) <doi:10.1002/wrcr.20548>,
[4] Iden and Durner (2013) <doi:10.1002/2014WR015937>,
[5] Peters (2014) <doi:10.1002/2014WR015937>,
[6] Wind G. P. (1966) and
[7] Peters and Durner (2008) <doi:10.1016/j.jhydrol.2008.04.016>.
Author: Ullrich Dettmann [aut, cre],
Felix Andrews [ctb] (For the code copied from the hydromad::SCEoptim
function (Version: 0.9-15) which is not on r-cran
(https://github.com/floybix/hydromad). The SCEoptim function is
adapted, and substantially revised from Brecht Donckels MATLAB code
which is in turn adopted from Qingyun Duans MATLAB code),
Brecht Donckels [ctb] (For the Matlab code which was adapted and
reviesed in the hydromad::SCEoptim function.),
Qingyun Duan [ctb] (For the MATLAB code adapted from Brecht Donkels.)
Maintainer: Ullrich Dettmann <ullrich.dettmann@thuenen.de>
Diff between SoilHyP versions 0.1.1 dated 2018-04-27 and 0.1.2 dated 2018-12-03
DESCRIPTION | 10 +++++----- MD5 | 19 ++++++++++--------- NAMESPACE | 1 + R/SEM.R | 1 - R/SWC.R | 2 +- R/Sad.R | 8 ++++++-- R/fitSHP.R | 31 ++++++++++++++----------------- man/BIC_HY.Rd |only man/Ku.Rd | 3 ++- man/SWC.Rd | 2 +- man/fitSHP.Rd | 15 ++++++++------- 11 files changed, 48 insertions(+), 44 deletions(-)
Title: GUI Tools to Process, Analyze and Plot Fisheries Data
Description: The tools you need to process, analyze, combine, integrate and
plot your fishery data: the georeferenced dataset from the Vessel Monitoring
System (VMS), from the Automatic Information System (AIS) or other tracking
devices, as well as the catches or landings dataset from the Logbook or Vessel
Register. Package 'vmsbase' is equipped by Viewer Tools to visually inspect data
at different steps of the analyses and to produce effective outputs for reports
and scientific publications. Viewers are conceived to show the VMS pings, to
visualize single or multiple tracks for fishing vessels, or to represent the VMS
data on Google Viewer, so that the user can produce easy to interpret and more
realistic visualization of both fishing effort and effort behaviour. Package
'vmsbase' represents the implementation of several R routines which have been
developed by the "Tor Vergata" University of Rome Team involved in the Italian
National Program for the Data Collection Framework for Fisheries Data between
2009-2012.
Author: Lorenzo D'Andrea, Tommaso Russo, Antonio Parisi, Stefano Cataudella
Maintainer: Lorenzo D'Andrea <dandrea.lorenz@gmail.com>
Diff between vmsbase versions 2.1.3 dated 2016-06-28 and 2.2.0 dated 2018-12-03
DESCRIPTION | 14 MD5 | 164 +++---- NAMESPACE | 6 R/editFun.R | 41 - R/fun_view.R | 470 +++++++++------------ R/fun_vms_db_clean.R | 631 ++++++++++++++-------------- R/gui_dcf_ind.R | 86 ++- R/gui_join_lb_vms.R | 294 ++++++------- R/gui_lb_db_create.R | 241 +++++----- R/gui_lb_db_edit.R | 158 +++---- R/gui_lb_db_stat.R | 162 +++---- R/gui_lb_editraw.R | 439 ++++++++++--------- R/gui_lb_met_cla.R | 449 ++++++++++---------- R/gui_lb_met_dis.R | 1 R/gui_lb_met_edi.R | 228 +++++----- R/gui_main.R | 521 +++++++++++++---------- R/gui_mark_fis_poi.R | 693 +++++++++++++++---------------- R/gui_mixsou.R | 94 ++-- R/gui_out_grid.R | 582 +++++++++++++------------- R/gui_vms_db_are.R | 220 +++++---- R/gui_vms_db_clean.R | 476 +++++++++++---------- R/gui_vms_db_create.R | 88 ++- R/gui_vms_db_cut.R | 504 +++++++++++----------- R/gui_vms_db_dep.R | 502 +++++++++++----------- R/gui_vms_db_intr.R | 439 ++++++++++--------- R/gui_vms_db_select.R | 1013 +++++++++++++++++++++++----------------------- R/gui_vms_db_stat.R | 741 ++++++++++++++++----------------- R/gui_vms_editraw.R | 380 +++++++++-------- R/gui_vms_met_pred.R | 896 ++++++++++++++++++++++------------------ R/gui_vms_save_bat.R | 190 ++++---- R/gui_vms_view_intrp.R | 414 +++++++++--------- R/gui_vms_view_ping.R | 262 ++++++----- R/gui_vms_view_track.R | 364 ++++++++-------- R/gui_vms_viz_adv.R | 709 +++++++++++++++----------------- R/internal.R | 37 - R/knots2kmh.R | 29 - R/latsex2dec.R | 29 - R/lonsex2dec.R | 29 - R/rad2deg.R | 23 - R/reference_classes.R | 708 ++++++++++++++++---------------- R/saveRawLogBook.R | 287 ++++++------- R/saveRawVms.R | 525 ++++++++++------------- R/vmsbase.R | 20 R/zzz.R | 9 man/Assign_Area.Rd | 1 man/CountMap.Rd | 1 man/Join2shp.Rd | 1 man/gui_dcf_ind.Rd | 1 man/gui_join_lb_vms.Rd | 1 man/gui_lb_db_create.Rd | 3 man/gui_lb_db_edit.Rd | 3 man/gui_lb_db_stat.Rd | 1 man/gui_lb_editraw.Rd | 5 man/gui_lb_met_cla.Rd | 1 man/gui_lb_met_dis.Rd | 1 man/gui_lb_met_edi.Rd | 3 man/gui_main.Rd | 1 man/gui_mark_fis_poi.Rd | 1 man/gui_out_grid.Rd | 3 man/gui_vms_db_are.Rd | 1 man/gui_vms_db_clean.Rd | 17 man/gui_vms_db_create.Rd | 3 man/gui_vms_db_cut.Rd | 10 man/gui_vms_db_dep.Rd | 12 man/gui_vms_db_intr.Rd | 10 man/gui_vms_db_sel.Rd | 10 man/gui_vms_db_stat.Rd | 10 man/gui_vms_editraw.Rd | 5 man/gui_vms_met_pred.Rd | 10 man/gui_vms_save_bat.Rd | 10 man/gui_vms_view_intrp.Rd | 10 man/gui_vms_view_ping.Rd | 10 man/gui_vms_view_track.Rd | 10 man/gui_vms_viz_adv.Rd | 10 man/gui_vmsdb_mixsou.Rd | 1 man/kno2kmh.Rd | 3 man/latsex2dec.Rd | 3 man/lonsex2dec.Rd | 3 man/plotNet.Rd | 1 man/rad2deg.Rd | 3 man/saveRawLogBook.Rd | 1 man/saveRawVms.Rd | 1 man/vmsbase.Rd | 7 83 files changed, 7280 insertions(+), 7076 deletions(-)
Title: Structural Equation Multidimensional Scaling
Description: Fits a structural equation multidimensional scaling (SEMDS) model for asymmetric and three-way input dissimilarities. It assumes that the dissimilarities are measured with errors. The latent dissimilarities are estimated as factor scores within an SEM framework while the objects are represented in a low-dimensional space as in MDS.
Author: Patrick Mair [aut, cre],
Jose Fernando Vera [aut]
Maintainer: Patrick Mair <mair@fas.harvard.edu>
Diff between semds versions 0.9-5 dated 2018-07-21 and 0.9-6 dated 2018-12-03
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++++------ data/BrahmsNorm.rda |binary data/Miller.rda |binary data/Recreation.rda |only data/Wang.rda |only man/BrahmsNorm.Rd | 12 +++--------- man/Miller.Rd | 12 +++--------- man/Recreation.Rd |only man/Wang.Rd |only man/semds.Rd | 16 +++++----------- 11 files changed, 25 insertions(+), 39 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-02-24 1.0.5
2015-11-02 1.0.4
2015-08-12 1.0.3
2015-07-08 1.0.2
2015-06-17 1.0.1
2015-06-11 1.0.0
Title: Simulation of Graphically Constrained Matrices
Description: Simulation of positive definite matrices constrained by an undirected or acyclic directed graph structure.
Author: Irene Córdoba [aut, cre] (<https://orcid.org/0000-0002-3252-4234>),
Gherardo Varando [aut] (<https://orcid.org/0000-0002-6708-1103>),
Concha Bielza [ths] (<https://orcid.org/0000-0001-7109-2668>),
Pedro Larrañaga [ths] (<https://orcid.org/0000-0003-0652-9872>)
Maintainer: Irene Córdoba <irene.cordoba@upm.es>
Diff between gmat versions 0.1.0 dated 2018-07-19 and 0.2.0 dated 2018-12-03
gmat-0.1.0/gmat/R/functions.R |only gmat-0.1.0/gmat/man/rgmat.Rd |only gmat-0.1.0/gmat/tests/testthat/test_rgmat.R |only gmat-0.2.0/gmat/DESCRIPTION | 16 ++-- gmat-0.2.0/gmat/MD5 | 25 ++++-- gmat-0.2.0/gmat/NAMESPACE | 15 ++- gmat-0.2.0/gmat/NEWS.md |only gmat-0.2.0/gmat/R/cor_dag.R |only gmat-0.2.0/gmat/R/cov_ug.R |only gmat-0.2.0/gmat/R/gmat.R | 6 - gmat-0.2.0/gmat/R/utils.R |only gmat-0.2.0/gmat/README.md | 100 ++++++++++++++++++-------- gmat-0.2.0/gmat/man/anti_t.Rd |only gmat-0.2.0/gmat/man/cor_dag.Rd |only gmat-0.2.0/gmat/man/cov_ug.Rd |only gmat-0.2.0/gmat/man/mh.Rd |only gmat-0.2.0/gmat/man/rgraph.Rd |only gmat-0.2.0/gmat/man/set_cond_number.Rd |only gmat-0.2.0/gmat/man/vectorize.Rd |only gmat-0.2.0/gmat/tests/testthat/test_cor_dag.R |only gmat-0.2.0/gmat/tests/testthat/test_cov_ug.R |only gmat-0.2.0/gmat/tests/testthat/test_utils.R |only 22 files changed, 109 insertions(+), 53 deletions(-)
Title: An Extensible Approach to Flux Balance Analysis
Description: A simple package for Flux Balance Analysis and related
metabolic modeling techniques. Functions are provided for: parsing
models in tabular format, converting parsed metabolic models to input
formats for common linear programming solvers, and
evaluating and applying gene-protein-reaction mappings. In addition, there
are wrappers to parse a model, select a solver, find the metabolic fluxes,
and return the results applied to the original model. Compared to other
packages in this field, this package puts a much heavier focus on
providing reusable components that can be used in the design of new
implementation of new techniques, in particular those that involve large
parameter sweeps.
Author: Max Conway [aut, cre]
Maintainer: Max Conway <conway.max1@gmail.com>
Diff between fbar versions 0.4.3 dated 2018-04-03 and 0.5.2 dated 2018-12-03
DESCRIPTION | 13 MD5 | 43 - NEWS.md | 9 R/metabolite_utilities.R | 4 R/parsing_and_conversion.R | 9 R/utilities.R | 33 - build/vignette.rds |binary inst/WORDLIST |only inst/doc/Introduction.html | 379 ++++--------- inst/doc/Multi-Objective_Optimization_case_study.R | 15 inst/doc/Multi-Objective_Optimization_case_study.Rmd | 15 inst/doc/Multi-Objective_Optimization_case_study.html | 506 ++++++------------ inst/doc/Tutorial.html | 451 ++++++---------- man/expanded_to_ROI.Rd | 1 man/expanded_to_glpk.Rd | 1 man/expanded_to_gurobi.Rd | 1 man/find_flux_variability_df.Rd | 3 man/reactiontbl_to_expanded.Rd | 1 man/reactiontbl_to_gurobi.Rd | 1 man/recompose_metabolites.Rd | 4 man/validate_expanded.Rd |only tests/spelling.R |only tests/testthat/test-utilities.R | 12 vignettes/Multi-Objective_Optimization_case_study.Rmd | 15 24 files changed, 593 insertions(+), 923 deletions(-)
Title: Movement Data Visualization
Description: Tools to visualize movement data (e.g. from GPS tracking) and temporal changes of environmental data (e.g. from remote sensing) by creating video animations.
Author: Jakob Schwalb-Willmann [aut, cre]
Maintainer: Jakob Schwalb-Willmann <movevis@schwalb-willmann.de>
Diff between moveVis versions 0.9.8 dated 2018-09-14 and 0.9.9 dated 2018-12-03
DESCRIPTION | 10 +++---- MD5 | 18 ++++++------ NAMESPACE | 9 +++++- NEWS.md | 18 ++++++++++++ R/animate_move.R | 50 ++++++++++++++--------------------- R/moveVis-internal.R | 48 +++++++++++++++++++++++++++++++++ man/animate_move.Rd | 15 +++++++--- tests/testthat/test-animate_move.R | 2 + tests/testthat/test-animate_raster.R | 4 ++ tests/testthat/test-get_libraries.R | 1 10 files changed, 126 insertions(+), 49 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-29 1.0.0
2018-06-25 0.9.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-24 1.0.2
2014-01-15 1.0.1
Title: Utility Functions for Production R Code
Description: A suite of utility functions providing functionality commonly
needed for production level projects such as logging, error handling,
and cache management.
Author: Jonathan Callahan [aut, cre],
Thomas Bergamaschi [aut]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between MazamaCoreUtils versions 0.1.1 dated 2018-10-26 and 0.1.3 dated 2018-12-03
DESCRIPTION | 10 MD5 | 26 + R/cacheManagement.R | 67 +++-- R/pylogger.R | 7 build/vignette.rds |binary inst/doc/cache-management.Rmd | 39 ++ inst/doc/cache-management.html | 547 +++++++++++++++++++++++------------------ inst/doc/error-handling.R |only inst/doc/error-handling.Rmd |only inst/doc/error-handling.html |only inst/doc/logging.R |only inst/doc/logging.Rmd |only inst/doc/logging.html |only man/manageCache.Rd | 12 tests/testthat/test-logging.R | 55 ++++ vignettes/cache-management.Rmd | 39 ++ vignettes/error-handling.Rmd |only vignettes/logging.Rmd |only 18 files changed, 504 insertions(+), 298 deletions(-)
More information about MazamaCoreUtils at CRAN
Permanent link
Title: Feature Finder
Description: Finds modelling features through a detailed analysis of model residuals using 'rpart' classification and regression trees. Scans the residuals of a model across subsets of the data to identify areas where the model prediction differs from the actual target variable. S. Chatterjee, A. S. Hadi (2006) <doi:10.1002/0470055464>.
Author: Richard Davis [aut, cre]
Maintainer: Richard Davis <davisconsulting@gmail.com>
Diff between featurefinder versions 1.0 dated 2018-04-06 and 1.1 dated 2018-12-03
DESCRIPTION | 8 - MD5 | 63 ++++---- NAMESPACE | 1 R/featurefinder.r | 203 +++++++++++++++++++++++---- build/vignette.rds |binary inst/doc/featurefinder.R | 35 ++-- inst/doc/featurefinder.Rmd | 37 +++- inst/doc/featurefinder.html | 113 ++++++++++++--- man/addFeatures.Rd |only man/doAllFactors.Rd | 2 man/expr.Rd | 2 man/fileConn.Rd | 2 man/filename.Rd | 2 man/findFeatures.Rd | 9 - man/futuresdata.Rd | 2 man/i.Rd | 2 man/mainfaclevels.Rd | 2 man/maxFactorLevels.Rd | 2 man/mpgdata.Rd | 2 man/names.Rd | 2 man/pathterms.Rd | 2 man/runname.Rd | 2 man/splitlist.Rd | 2 man/t.Rd | 2 man/tree.Rd | 2 man/treeGenerationMinBucket.Rd | 2 man/treeSummaryMinBucket.Rd | 2 man/treeSummaryResidualMagnitudeThreshold.Rd | 2 man/treeSummaryResidualThreshold.Rd | 2 man/trees.Rd | 2 man/treesAll.Rd | 2 man/vars.Rd | 2 vignettes/featurefinder.Rmd | 37 +++- 33 files changed, 399 insertions(+), 151 deletions(-)
Title: Basic Sensitivity Analysis of Epidemiological Results
Description: Basic sensitivity analysis of the observed relative risks adjusting
for unmeasured confounding and misclassification of the
exposure/outcome, or both. It follows the bias analysis methods and
examples from the book by Lash T.L, Fox M.P, and Fink A.K.
"Applying Quantitative Bias Analysis to Epidemiologic Data",
('Springer', 2009).
Author: Denis Haine [aut, cre] (<https://orcid.org/0000-0002-6691-7335>)
Maintainer: Denis Haine <denis.haine@gmail.com>
Diff between episensr versions 0.9.2 dated 2017-11-13 and 0.9.3 dated 2018-12-03
DESCRIPTION | 26 - MD5 | 80 ++-- NAMESPACE | 6 NEWS.md | 13 R/confounders.R | 6 R/confounders.array.R |only R/confounders.emm.R | 10 R/confounders.evalue.R |only R/confounders.ext.R |only R/confounders.poly.R | 8 R/misclassification.R | 2 R/multidimBias.R | 7 R/multiple.bias.R |only R/pipe.R |only R/print.episensr.R | 30 + R/probsens.R | 120 ++++--- R/probsens.conf.R | 87 +++-- R/probsens.irr.R | 6 R/probsens.sel.R | 444 +++++++++++++++++++++---- R/selection.R | 54 ++- README.md | 6 build/vignette.rds |binary inst/doc/episensr.R | 128 +++++++ inst/doc/episensr.Rmd | 236 +++++++++++++ inst/doc/episensr.html | 531 ++++++++++++++++++++++++------- man/boot.bias.Rd | 3 man/confounders.Rd | 10 man/confounders.array.Rd |only man/confounders.emm.Rd | 10 man/confounders.evalue.Rd |only man/confounders.ext.Rd |only man/confounders.limit.Rd | 4 man/confounders.poly.Rd | 8 man/episensr-package.Rd | 29 - man/misclassification.Rd | 2 man/multidimBias.Rd | 4 man/multiple.bias.Rd |only man/pipe.Rd |only man/probsens.Rd | 28 + man/probsens.conf.Rd | 9 man/probsens.irr.Rd | 13 man/probsens.irr.conf.Rd | 15 man/probsens.sel.Rd | 27 + man/selection.Rd | 21 - tests/testthat/test-confounders.array.R |only tests/testthat/test-confounders.evalue.R |only vignettes/episensr.Rmd | 236 +++++++++++++ 47 files changed, 1802 insertions(+), 417 deletions(-)
Title: General Bivariate Copula Theory and Many Utility Functions
Description: Extensive functions for bivariate copula (bicopula) computations and related
operations concerning oft cited bicopula theory described by Nelsen (2006), Joe (2014), and
other selected works. The lower, upper, product, and select other bicopula are implemented.
Arbitrary bicopula expressions include the diagonal, survival copula, the dual of a copula,
co-copula, numerical bicopula density, and maximum likelihood estimation. Level
curves (sets), horizontal and vertical sections also are supported. Numerical derivatives and
inverses of a bicopula are provided; simulation by the conditional distribution method thus is
supported. Bicopula composition, convex combination, and products are provided. Support
extends to Kendall Function as well as the Lmoments thereof, Kendall Tau, Spearman Rho and
Footrule, Gini Gamma, Blomqvist Beta, Hoeffding Phi, Schweizer-Wolff Sigma, tail dependency
(including pseudo-polar representation) and tail order, skewness, and bivariate Lmoments.
Evaluators of positively/negatively quadrant dependency, left increasing and right
decreasing are available. Kullback-Leibler divergence, Vuong's procedure, Spectral Measure,
and Lcomoments for copula inference are available. Quantile and median regressions for
V with respect to U and U with respect to V are available. Empirical copulas (EC) are supported.
Author: William Asquith
Maintainer: William Asquith <william.asquith@ttu.edu>
Diff between copBasic versions 2.1.0 dated 2018-05-07 and 2.1.1 dated 2018-12-03
ChangeLog | 54 ++++++++---- DESCRIPTION | 8 - MD5 | 166 +++++++++++++++++++------------------- NAMESPACE | 3 R/P.R | 2 R/aicCOP.R |only R/bicCOP.R |only R/mleCOP.R | 4 R/rmseCOP.R |only man/CLcop.Rd | 3 man/COP.Rd | 1 man/COPinv.Rd | 1 man/COPinv2.Rd | 1 man/EMPIRcopdf.Rd | 1 man/EMPIRgrid.Rd | 1 man/EMPIRgridder.Rd | 1 man/EMPIRgridder2.Rd | 1 man/EMPIRgridderinv.Rd | 1 man/EMPIRgridderinv2.Rd | 1 man/EMPIRmed.regress.Rd | 1 man/EMPIRmed.regress2.Rd | 1 man/EMPIRqua.regress.Rd | 1 man/EMPIRqua.regress2.Rd | 1 man/EMPIRsim.Rd | 1 man/EMPIRsimv.Rd | 1 man/N4212cop.Rd | 1 man/PLACKETTcop.Rd | 1 man/PLACKETTpar.Rd | 1 man/PLACKETTsim.Rd | 1 man/PSP.Rd | 1 man/ReineckeWell266.Rd | 1 man/ReineckeWells.Rd | 1 man/aicCOP.Rd |only man/asCOP.Rd | 1 man/bicCOP.Rd |only man/blomCOP.Rd | 1 man/coCOP.Rd | 1 man/composite2COP.Rd | 1 man/composite3COP.Rd | 1 man/convex2COP.Rd | 1 man/convexCOP.Rd | 1 man/copBasic-package.Rd | 20 ++-- man/copBasic.fitpara.Rd | 4 man/derCOP.Rd | 1 man/derCOP2.Rd | 1 man/derCOPinv.Rd | 1 man/derCOPinv2.Rd | 1 man/diagCOP.Rd | 1 man/diagCOPatf.Rd | 1 man/duCOP.Rd | 1 man/gridCOP.Rd | 1 man/isCOP.LTD.Rd | 1 man/isCOP.PQD.Rd | 1 man/isCOP.RTI.Rd | 1 man/isCOP.permsym.Rd | 1 man/isCOP.radsym.Rd | 1 man/joeskewCOP.Rd | 1 man/joint.curvesCOP.Rd | 1 man/joint.curvesCOP2.Rd | 1 man/lcomCOPpv.Rd | 1 man/lcomoms2.ABKGcop2parameter.Rd | 1 man/lcomoms2.ABcop2parameter.Rd | 1 man/level.curvesCOP.Rd | 1 man/level.curvesCOP2.Rd | 1 man/level.setCOP.Rd | 1 man/level.setCOP2.Rd | 1 man/med.regressCOP.Rd | 1 man/med.regressCOP2.Rd | 1 man/mleCOP.Rd | 1 man/prod2COP.Rd | 1 man/psepolar.Rd | 3 man/qua.regressCOP.Rd | 1 man/qua.regressCOP.draw.Rd | 1 man/qua.regressCOP2.Rd | 1 man/rhoCOP.Rd | 1 man/rmseCOP.Rd |only man/sectionCOP.Rd | 1 man/semicorCOP.Rd | 1 man/simCOP.Rd | 1 man/simCOPmicro.Rd | 1 man/simcomposite3COP.Rd | 1 man/simcompositeCOP.Rd | 1 man/spectralmeas.Rd | 4 man/statTn.Rd | 11 +- man/surCOP.Rd | 1 man/surfuncCOP.Rd | 1 man/vuongCOP.Rd | 4 87 files changed, 230 insertions(+), 124 deletions(-)
Title: Statistical Inference and Sure Independence Screening via Ball
Statistics
Description: Hypothesis tests and sure independence screening (SIS) procedure based on ball statistics, including ball divergence <doi:10.1214/17-AOS1579>, ball covariance, and ball correlation <doi:10.1080/01621459.2018.1462709>, are developed to analyze complex data. The ball divergence and ball covariance based distribution-free tests are implemented to examine equality of multivariate distributions and independence between random vectors of arbitrary dimensions. Furthermore, a generic non-parametric SIS procedure based on ball correlation and all of its variants are implemented to tackle the challenge in the context of ultra high dimensional data.
Author: Xueqin Wang, Wenliang Pan, Heping Zhang, Hongtu Zhu, Yuan Tian, Weinan Xiao, Chengfeng Liu, Jin Zhu
Maintainer: Jin Zhu <zhuj37@mail2.sysu.edu.cn>
Diff between Ball versions 1.3.5 dated 2018-11-02 and 1.3.6 dated 2018-12-03
DESCRIPTION | 14 ++++----- MD5 | 32 ++++++++++----------- NAMESPACE | 8 +++++ NEWS.md | 4 ++ R/bcorsis.R | 8 ++--- R/bcov.R | 58 ++++++++++++++++++++++++++++++++++++-- R/bd.R | 64 +++++++++++++++++++++++++++++++++++++++--- R/data.R | 4 ++ build/vignette.rds |binary inst/doc/Ball.html | 6 +-- man/bcov.test.Rd | 25 +++++++++++++++- man/bd.Rd | 2 - man/bd.test.Rd | 26 +++++++++++++++-- src/utilities.c | 50 +++++++++++++++++--------------- tests/testthat/test_bcorsis.R | 14 +++++---- tests/testthat/test_bcov.R | 41 +++++++++++++++++++++----- tests/testthat/test_bd.R | 46 ++++++++++++++++++++++-------- 17 files changed, 311 insertions(+), 91 deletions(-)