Title: Spatiotemporal Boundary Detection Model for Areal Unit Data
Description: Implements a spatiotemporal boundary detection model with a dissimilarity
metric for areal data with inference in a Bayesian setting using Markov chain
Monte Carlo (MCMC). The response variable can be modeled as Gaussian (no nugget),
probit or Tobit link and spatial correlation is introduced at each time point
through a conditional autoregressive (CAR) prior. Temporal correlation is introduced
through a hierarchical structure and can be specified as exponential or first-order
autoregressive. Full details of the package can be found in the accompanying vignette.
Furthermore, the details of the package can be found in "Diagnosing Glaucoma
Progression with Visual Field Data Using a Spatiotemporal Boundary Detection Method",
by Berchuck et al (2018), <arXiv:1805.11636>. The paper is in press at the Journal of
the American Statistical Association.
Author: Samuel I. Berchuck [aut, cre] (<https://orcid.org/0000-0001-5705-3144>)
Maintainer: Samuel I. Berchuck <sib2@duke.edu>
Diff between womblR versions 1.0.3 dated 2018-06-20 and 1.0.4 dated 2018-12-04
DESCRIPTION | 23 ++++++------- MD5 | 42 ++++++++++++------------ NEWS.md | 4 ++ R/womblR-package.R | 7 ++-- build/vignette.rds |binary inst/doc/womblR-example.html | 74 +++++++++++++++++++++---------------------- man/GarwayHeath.Rd | 1 man/HFAII_Queen.Rd | 1 man/HFAII_QueenHF.Rd | 1 man/HFAII_Rook.Rd | 1 man/PlotAdjacency.Rd | 6 +-- man/PlotSensitivity.Rd | 6 +-- man/PlotVfTimeSeries.Rd | 1 man/PosteriorAdj.Rd | 1 man/STBDwDM.Rd | 16 ++++----- man/VFSeries.Rd | 1 man/diagnostics.Rd | 11 ++---- man/is.PosteriorAdj.Rd | 1 man/is.STBDwDM.Rd | 1 man/predict.STBDwDM.Rd | 1 man/womblR.Rd | 1 src/Makevars | 8 ++-- 22 files changed, 101 insertions(+), 107 deletions(-)
Title: Fast Rolling Functions for Seismology using 'Rcpp'
Description: Fast versions of seismic analysis functions that 'roll' over a
vector of values. See the 'RcppRoll' package for alternative
versions of basic statistical functions such as rolling mean,
median, etc.
Author: Jonathan Callahan [aut],
Rob Casey [aut],
Mary Templeton [aut],
Gillian Sharer [aut, cre]
Maintainer: Gillian Sharer <gillian@iris.washington.edu>
Diff between seismicRoll versions 1.1.2 dated 2016-10-13 and 1.1.3 dated 2018-12-04
seismicRoll-1.1.2/seismicRoll/src/Makevars |only seismicRoll-1.1.2/seismicRoll/src/Makevars.win |only seismicRoll-1.1.3/seismicRoll/DESCRIPTION | 28 ++++---- seismicRoll-1.1.3/seismicRoll/MD5 | 40 ++++++------ seismicRoll-1.1.3/seismicRoll/NAMESPACE | 5 - seismicRoll-1.1.3/seismicRoll/R/RcppExports.R | 14 ++-- seismicRoll-1.1.3/seismicRoll/R/roll_hampel.R | 4 - seismicRoll-1.1.3/seismicRoll/R/roll_mean.R | 4 - seismicRoll-1.1.3/seismicRoll/R/roll_median.R | 4 - seismicRoll-1.1.3/seismicRoll/R/roll_range.R |only seismicRoll-1.1.3/seismicRoll/R/roll_sd.R | 4 - seismicRoll-1.1.3/seismicRoll/R/roll_stalta.R | 4 - seismicRoll-1.1.3/seismicRoll/R/seismicRoll.R | 11 ++- seismicRoll-1.1.3/seismicRoll/man/findOutliers.Rd | 1 seismicRoll-1.1.3/seismicRoll/man/roll_hampel.Rd | 1 seismicRoll-1.1.3/seismicRoll/man/roll_mean.Rd | 1 seismicRoll-1.1.3/seismicRoll/man/roll_median.Rd | 1 seismicRoll-1.1.3/seismicRoll/man/roll_range.Rd |only seismicRoll-1.1.3/seismicRoll/man/roll_sd.Rd | 1 seismicRoll-1.1.3/seismicRoll/man/roll_stalta.Rd | 1 seismicRoll-1.1.3/seismicRoll/man/seismicRoll.Rd | 8 ++ seismicRoll-1.1.3/seismicRoll/src/RcppExports.cpp | 39 ++++++++++- seismicRoll-1.1.3/seismicRoll/src/source_files.cpp | 70 +++++++++++++++++++++ 23 files changed, 182 insertions(+), 59 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-30 0.6
2017-05-23 0.5
2017-03-02 0.4
2016-09-22 0.3
2016-07-21 0.2
2016-06-03 0.1
Title: Geometric Shadow Calculations
Description: Functions for calculating: (1) shadow height, (2) logical shadow flag, (3) shadow footprint, (4) Sky View Factor and (5) radiation load. Basic required inputs include a polygonal layer of obstacle outlines along with their heights (i.e. "extruded polygons"), sun azimuth and sun elevation. The package also provides functions for related preliminary calculations: breaking polygons into line segments, determining azimuth of line segments, shifting segments by azimuth and distance, constructing the footprint of a line-of-sight between an observer and the sun, and creating a 3D grid covering the surface area of extruded polygons.
Author: Michael Dorman [aut, cre],
Evyatar Erell [ctb],
Itai Kloog [ctb],
Adi Vulkan [ctb]
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>
Diff between shadow versions 0.5.7 dated 2018-09-29 and 0.5.9 dated 2018-12-04
DESCRIPTION | 6 ++-- MD5 | 20 ++++++++------- NAMESPACE | 3 ++ NEWS.md | 8 +++++- R/coefDirect.R | 3 +- R/flowlength.R |only R/shadow-package.R | 2 + R/surfaceGrid.R | 70 +++++++++++++++++++++++++++++++++++++---------------- R/toSeg.R | 4 +-- man/flowlength.Rd |only man/surfaceGrid.Rd | 19 ++++++++++++-- man/toSeg.Rd | 4 +-- 12 files changed, 98 insertions(+), 41 deletions(-)
Title: Cluster Analysis via Nonparametric Density Estimation
Description: Cluster analysis via nonparametric density
estimation is performed. Operationally, the kernel method is used throughout to estimate
the density. Diagnostics methods for evaluating the quality of the clustering
are available. The package includes also a routine to estimate the
probability density function obtained by the kernel method, given a set of
data with arbitrary dimensions.
Author: Adelchi Azzalini, Giovanna Menardi for the current version;
Adelchi Azzalini, Giovanna Menardi and Tiziana Rosolin up to version 0.1-13.
Maintainer: Giovanna Menardi <menardi@stat.unipd.it>
Diff between pdfCluster versions 1.0-2 dated 2014-04-30 and 1.0-3 dated 2018-12-04
DESCRIPTION | 15 +++---- MD5 | 15 +++---- NAMESPACE | 14 ++++++ R/zzz.R | 16 ++++--- inst/ChangeLog | 5 ++ man/oliveoil.Rd | 91 +++++++++++++++++++++----------------------- man/pdfCluster-package.Rd | 3 - man/wine.Rd | 65 +++++++++++++++---------------- src/registerDynamicSymbol.c |only 9 files changed, 122 insertions(+), 102 deletions(-)
Title: Multiple Logistic Regression for 3D Chromatin Domain Border
Analysis
Description: We propose a multiple logistic regression model to assess the influences of genomic features such as DNA-binding proteins and functional elements on topological domain borders.
Author: Raphael Mourad
Maintainer: Raphael Mourad <raphael.mourad@ibcg.biotoul.fr>
Diff between HiCfeat versions 1.3 dated 2018-04-18 and 1.4 dated 2018-12-04
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/BorderAnalysisMiscFun.R | 2 +- build/partial.rdb |binary 4 files changed, 8 insertions(+), 8 deletions(-)
Title: Automatic Codebooks from Survey Metadata Encoded in Attributes
Description: Easily automate the following tasks to describe data frames:
summarise the distributions of scales and items graphically and using descriptive statistics,
compute reliabilities (internal consistencies, retest, multilevel) for psychological scales,
combine this information with metadata (such as item labels and labelled values) that is derived from R attributes.
To do so, the package relies on 'rmarkdown' partials, so you can generate HTML, PDF, and Word documents. Codebooks
are also available as tables (CSV, Excel, etc.).
The metadata and codebooks are also available at your fingertips via RStudio Addins.
Author: Ruben Arslan [aut, cre]
Maintainer: Ruben Arslan <ruben.arslan@gmail.com>
Diff between codebook versions 0.7.4 dated 2018-11-24 and 0.7.5 dated 2018-12-04
DESCRIPTION | 6 MD5 | 32 NAMESPACE | 8 NEWS.md | 4 R/psych_print.R | 5 inst/doc/codebook.html | 4 inst/doc/codebook_labelled_manual.html | 4 inst/doc/codebook_nested_scale.html | 4 inst/doc/codebook_qualtrics.html | 4 inst/doc/codebook_sav.html | 4 inst/doc/codebook_tutorial.Rmd | 2 man/knit_print.alpha.Rd | 2 man/knit_print.htest.Rd | 2 man/knit_print.multilevel.Rd | 2 man/reexports.Rd | 5 vignettes/codebook_tutorial.Rmd | 2 vignettes/codebook_tutorial.html | 3379 ++++++++++++++++++++++++++++++++- 17 files changed, 3428 insertions(+), 41 deletions(-)
Title: Solving Mixed Model Equations in R
Description: Structural multivariate-univariate linear mixed model solver for multiple random effects allowing the specification of variance-covariance structures for random effects and allowing the fit of heterogeneous and special variance models (Covarrubias-Pazaran, 2016 <doi:10.1371/journal.pone.0156744>; Maier et al., 2015 <doi:10.1016/j.ajhg.2014.12.006>). ML/REML estimates can be obtained using the Direct-Inversion Newton-Raphson, Direct-Inversion Average Information and Efficient Mixed Model Association algorithms. Designed for genomic prediction and genome wide association studies (GWAS), particularly focused in the p > n problem (more coefficients than observations) to include multiple relationship matrices or other covariance structures. Spatial models can be fitted using the two-dimensional spline functionality in sommer.
Author: Giovanny Covarrubias-Pazaran
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>
Diff between sommer versions 3.6 dated 2018-10-08 and 3.7 dated 2018-12-04
sommer-3.6/sommer/R/A.mat.R |only sommer-3.6/sommer/R/D.mat.R |only sommer-3.6/sommer/R/E.mat.R |only sommer-3.6/sommer/R/EM.R |only sommer-3.6/sommer/R/EMMA.R |only sommer-3.6/sommer/R/GWAS2.R |only sommer-3.6/sommer/R/NR.R |only sommer-3.6/sommer/R/atcg1234.R |only sommer-3.6/sommer/R/blocker.R |only sommer-3.6/sommer/R/build.HMM.R |only sommer-3.6/sommer/R/design.score.R |only sommer-3.6/sommer/R/fill.design.R |only sommer-3.6/sommer/R/gwas.related.R |only sommer-3.6/sommer/R/h2.fun.R |only sommer-3.6/sommer/R/matrix.calculations.R |only sommer-3.6/sommer/R/miscelaneous.R |only sommer-3.6/sommer/R/mmer2.R |only sommer-3.6/sommer/R/nna.R |only sommer-3.6/sommer/R/overlay.R |only sommer-3.6/sommer/R/ped.to.A.R |only sommer-3.6/sommer/R/pedtoK.R |only sommer-3.6/sommer/R/pin.R |only sommer-3.6/sommer/R/score.calcMV.R |only sommer-3.6/sommer/R/spatPlots.R |only sommer-3.6/sommer/R/spl2D.R |only sommer-3.6/sommer/R/variogram.R |only sommer-3.6/sommer/R/vctable.R |only sommer-3.6/sommer/data/BTdata.RData |only sommer-3.6/sommer/data/CPdata.RData |only sommer-3.6/sommer/data/ExpDesigns.RData |only sommer-3.6/sommer/data/F1geno.RData |only sommer-3.6/sommer/data/FDdata.RData |only sommer-3.6/sommer/data/HDdata.RData |only sommer-3.6/sommer/data/PolyData.RData |only sommer-3.6/sommer/data/RICE.RData |only sommer-3.6/sommer/data/Technow_data.RData |only sommer-3.6/sommer/data/augment.RData |only sommer-3.6/sommer/data/cornHybrid.RData |only sommer-3.6/sommer/data/example.RData |only sommer-3.6/sommer/data/gryphondata.RData |only sommer-3.6/sommer/data/h2example.RData |only sommer-3.6/sommer/data/my.colors.RData |only sommer-3.6/sommer/data/wheatLines.RData |only sommer-3.6/sommer/data/yates.oats.RData |only sommer-3.6/sommer/man/BTdata.Rd |only sommer-3.6/sommer/man/CPdata.Rd |only sommer-3.6/sommer/man/ExpDesigns.Rd |only sommer-3.6/sommer/man/F1geno.Rd |only sommer-3.6/sommer/man/FDdata.Rd |only sommer-3.6/sommer/man/HDdata.Rd |only sommer-3.6/sommer/man/MEMMA.Rd |only sommer-3.6/sommer/man/MNR.Rd |only sommer-3.6/sommer/man/PolyData.Rd |only sommer-3.6/sommer/man/RICE.Rd |only sommer-3.6/sommer/man/Technow_data.Rd |only sommer-3.6/sommer/man/augment.Rd |only sommer-3.6/sommer/man/big.peaks.col.Rd |only sommer-3.6/sommer/man/blocker.Rd |only sommer-3.6/sommer/man/blockerL.Rd |only sommer-3.6/sommer/man/blockerT.Rd |only sommer-3.6/sommer/man/brewer.pal.Rd |only sommer-3.6/sommer/man/cornHybrid.Rd |only sommer-3.6/sommer/man/design.score.Rd |only sommer-3.6/sommer/man/example.Rd |only sommer-3.6/sommer/man/fdr.Rd |only sommer-3.6/sommer/man/fdr2.Rd |only sommer-3.6/sommer/man/gryphondata.Rd |only sommer-3.6/sommer/man/h2example.Rd |only sommer-3.6/sommer/man/hadamard.prod.Rd |only sommer-3.6/sommer/man/hdm.Rd |only sommer-3.6/sommer/man/hits.Rd |only sommer-3.6/sommer/man/is.diagonal.matrix.Rd |only sommer-3.6/sommer/man/is.square.matrix.Rd |only sommer-3.6/sommer/man/matrix.trace.Rd |only sommer-3.6/sommer/man/maxi.qtl.Rd |only sommer-3.6/sommer/man/my.colors.Rd |only sommer-3.6/sommer/man/nna.Rd |only sommer-3.6/sommer/man/phase.F1.Rd |only sommer-3.6/sommer/man/plot.variogram.Rd |only sommer-3.6/sommer/man/score.calcMV.Rd |only sommer-3.6/sommer/man/variogram.Rd |only sommer-3.6/sommer/man/vctable.Rd |only sommer-3.6/sommer/man/vctable.help.Rd |only sommer-3.6/sommer/man/wheatLines.Rd |only sommer-3.6/sommer/man/yates.oats.Rd |only sommer-3.7/sommer/CHANGELOG | 43 sommer-3.7/sommer/DESCRIPTION | 25 sommer-3.7/sommer/MD5 | 240 ++-- sommer-3.7/sommer/NAMESPACE | 140 +- sommer-3.7/sommer/R/FUN_algorithms.R |only sommer-3.7/sommer/R/FUN_markers.R |only sommer-3.7/sommer/R/FUN_plotting.R |only sommer-3.7/sommer/R/FUN_relationships.R |only sommer-3.7/sommer/R/FUN_spatial.R |only sommer-3.7/sommer/R/FUN_special.R |only sommer-3.7/sommer/R/FUN_stats.R |only sommer-3.7/sommer/R/FUN_utils.R |only sommer-3.7/sommer/R/GWAS.R | 465 +++------ sommer-3.7/sommer/R/RcppExports.R |only sommer-3.7/sommer/R/mmer.R | 913 +++++++---------- sommer-3.7/sommer/R/mydeprecated.R |only sommer-3.7/sommer/data/DT_augment.RData |only sommer-3.7/sommer/data/DT_btdata.RData |only sommer-3.7/sommer/data/DT_cornhybrids.RData |only sommer-3.7/sommer/data/DT_cpdata.RData |only sommer-3.7/sommer/data/DT_example.RData |only sommer-3.7/sommer/data/DT_expdesigns.RData |only sommer-3.7/sommer/data/DT_fulldiallel.RData |only sommer-3.7/sommer/data/DT_gryphon.RData |only sommer-3.7/sommer/data/DT_h2.RData |only sommer-3.7/sommer/data/DT_halfdiallel.RData |only sommer-3.7/sommer/data/DT_legendre.RData |only sommer-3.7/sommer/data/DT_polyploid.RData |only sommer-3.7/sommer/data/DT_rice.RData |only sommer-3.7/sommer/data/DT_technow.RData |only sommer-3.7/sommer/data/DT_wheat.RData |only sommer-3.7/sommer/data/DT_yatesoats.RData |only sommer-3.7/sommer/data/datalist | 31 sommer-3.7/sommer/inst/CITATION | 15 sommer-3.7/sommer/inst/doc/sommer.R | 344 ++---- sommer-3.7/sommer/inst/doc/sommer.Rmd | 363 ++----- sommer-3.7/sommer/inst/doc/sommer.pdf |binary sommer-3.7/sommer/inst/doc/sommer.start.R | 251 +++- sommer-3.7/sommer/inst/doc/sommer.start.Rmd | 458 ++++++-- sommer-3.7/sommer/inst/doc/sommer.start.pdf |binary sommer-3.7/sommer/man/A.mat.Rd | 8 sommer-3.7/sommer/man/AR1mat.Rd |only sommer-3.7/sommer/man/ARMAmat.Rd |only sommer-3.7/sommer/man/CSmat.Rd |only sommer-3.7/sommer/man/D.mat.Rd | 46 sommer-3.7/sommer/man/DT_augment.Rd |only sommer-3.7/sommer/man/DT_btdata.Rd |only sommer-3.7/sommer/man/DT_cornhybrids.Rd |only sommer-3.7/sommer/man/DT_cpdata.Rd |only sommer-3.7/sommer/man/DT_example.Rd |only sommer-3.7/sommer/man/DT_expdesigns.Rd |only sommer-3.7/sommer/man/DT_fulldiallel.Rd |only sommer-3.7/sommer/man/DT_gryphon.Rd |only sommer-3.7/sommer/man/DT_h2.Rd |only sommer-3.7/sommer/man/DT_halfdiallel.Rd |only sommer-3.7/sommer/man/DT_legendre.Rd |only sommer-3.7/sommer/man/DT_polyploid.Rd |only sommer-3.7/sommer/man/DT_rice.Rd |only sommer-3.7/sommer/man/DT_technow.Rd |only sommer-3.7/sommer/man/DT_wheat.Rd |only sommer-3.7/sommer/man/DT_yatesoats.Rd |only sommer-3.7/sommer/man/E.mat.Rd | 2 sommer-3.7/sommer/man/EM.Rd | 63 - sommer-3.7/sommer/man/EMMA.Rd |only sommer-3.7/sommer/man/GWAS.Rd | 369 +++---- sommer-3.7/sommer/man/GWAS2.Rd | 317 ++---- sommer-3.7/sommer/man/adiag1.Rd | 2 sommer-3.7/sommer/man/anova.Rd | 15 sommer-3.7/sommer/man/at.Rd |only sommer-3.7/sommer/man/atcg1234.Rd | 18 sommer-3.7/sommer/man/build.HMM.Rd | 8 sommer-3.7/sommer/man/coef.Rd | 12 sommer-3.7/sommer/man/cs.Rd |only sommer-3.7/sommer/man/ds.Rd |only sommer-3.7/sommer/man/fcm.Rd |only sommer-3.7/sommer/man/fill.design.Rd | 14 sommer-3.7/sommer/man/fitted.Rd | 10 sommer-3.7/sommer/man/fixm.Rd |only sommer-3.7/sommer/man/h2.fun.Rd | 34 sommer-3.7/sommer/man/impute.Rd | 2 sommer-3.7/sommer/man/jet.colors.Rd | 2 sommer-3.7/sommer/man/leg.Rd |only sommer-3.7/sommer/man/list2usmat.Rd |only sommer-3.7/sommer/man/manhattan.Rd | 5 sommer-3.7/sommer/man/map.plot.Rd | 2 sommer-3.7/sommer/man/mmer.Rd | 671 +++++-------- sommer-3.7/sommer/man/mmer2.Rd | 386 +------ sommer-3.7/sommer/man/overlay.Rd | 52 - sommer-3.7/sommer/man/pedtoK.Rd | 2 sommer-3.7/sommer/man/pin.Rd | 22 sommer-3.7/sommer/man/plot.Rd | 10 sommer-3.7/sommer/man/predict.Rd |only sommer-3.7/sommer/man/residuals.Rd | 11 sommer-3.7/sommer/man/sommer-package.Rd | 108 +- sommer-3.7/sommer/man/spatPlots.Rd | 50 sommer-3.7/sommer/man/spl2D.Rd |only sommer-3.7/sommer/man/summary.Rd | 14 sommer-3.7/sommer/man/transp.Rd | 2 sommer-3.7/sommer/man/uncm.Rd |only sommer-3.7/sommer/man/unsm.Rd |only sommer-3.7/sommer/man/us.Rd |only sommer-3.7/sommer/man/vs.Rd |only sommer-3.7/sommer/src |only sommer-3.7/sommer/vignettes/sommer.Rmd | 363 ++----- sommer-3.7/sommer/vignettes/sommer.html | 996 ++++++------------- sommer-3.7/sommer/vignettes/sommer.start.Rmd | 458 ++++++-- sommer-3.7/sommer/vignettes/sommer.start.html | 1331 +++++++++++++++++--------- 192 files changed, 4209 insertions(+), 4484 deletions(-)
Title: Tools for Tensor Analysis and Decomposition
Description: A set of tools for creation, manipulation, and modeling
of tensors with arbitrary number of modes. A tensor in the context of data
analysis is a multidimensional array. rTensor does this by providing a S4
class 'Tensor' that wraps around the base 'array' class. rTensor
provides common tensor operations as methods, including matrix unfolding,
summing/averaging across modes, calculating the Frobenius norm, and taking
the inner product between two tensors. Familiar array operations are
overloaded, such as index subsetting via '[' and element-wise operations.
rTensor also implements various tensor decomposition, including CP, GLRAM,
MPCA, PVD, and Tucker. For tensors with 3 modes, rTensor also implements
transpose, t-product, and t-SVD, as defined in Kilmer et al. (2013). Some
auxiliary functions include the Khatri-Rao product, Kronecker product, and
the Hamadard product for a list of matrices.
Author: James Li and Jacob Bien and Martin Wells
Maintainer: James Li <jamesyili@gmail.com>
Diff between rTensor versions 1.3 dated 2015-12-14 and 1.4 dated 2018-12-04
DESCRIPTION | 13 +++--- MD5 | 95 +++++++++++++++++++++++----------------------- NAMESPACE | 5 -- R/rTensor_Class.R | 16 +++---- inst |only man/Ops-methods.Rd | 3 - man/Tensor-class.Rd | 12 ++--- man/as.tensor.Rd | 1 man/cp.Rd | 1 man/cs_fold.Rd | 1 man/cs_unfold-methods.Rd | 3 - man/dim-methods.Rd | 3 - man/extract-methods.Rd | 5 -- man/faces_tnsr.Rd | 1 man/fnorm-methods.Rd | 3 - man/fold.Rd | 1 man/hadamard_list.Rd | 1 man/head-methods.Rd | 3 - man/hosvd.Rd | 1 man/initialize-methods.Rd | 3 - man/innerProd-methods.Rd | 3 - man/k_fold.Rd | 1 man/k_unfold-methods.Rd | 3 - man/khatri_rao.Rd | 1 man/khatri_rao_list.Rd | 1 man/kronecker_list.Rd | 1 man/matvec-methods.Rd | 3 - man/modeMean-methods.Rd | 3 - man/modeSum-methods.Rd | 3 - man/mpca.Rd | 1 man/plot_orl.Rd | 1 man/print-methods.Rd | 3 - man/pvd.Rd | 1 man/rand_tensor.Rd | 1 man/rs_fold.Rd | 1 man/rs_unfold-methods.Rd | 3 - man/show-methods.Rd | 3 - man/t-methods.Rd | 3 - man/t_mult.Rd | 1 man/t_svd.Rd | 1 man/t_svd_reconstruct.Rd | 1 man/tail-methods.Rd | 3 - man/tperm-methods.Rd | 3 - man/ttl.Rd | 1 man/ttm.Rd | 1 man/tucker.Rd | 1 man/unfold-methods.Rd | 3 - man/unmatvec.Rd | 1 man/vec-methods.Rd | 3 - 49 files changed, 92 insertions(+), 134 deletions(-)
Title: Analysis of Stable Matchings
Description: Implements structural estimators to correct for
the sample selection bias from observed outcomes in matching
markets. This includes one-sided matching of agents into
groups as well as two-sided matching of students to schools.
The package also contains algorithms to find stable matchings
in the three most common matching problems: the stable roommates
problem, the college admissions problem, and the house
allocation problem.
Author: Thilo Klein [aut, cre],
Sven Giegerich [ctb],
Alexander Sauer [ctb]
Maintainer: Thilo Klein <thilo@klein.uk>
Diff between matchingMarkets versions 0.3-6 dated 2018-10-23 and 1.0-0 dated 2018-12-04
DESCRIPTION | 6 MD5 | 26 +-- NEWS.md | 8 R/RcppExports.R | 16 + R/hri.R | 344 ++++++++++++++-------------------------- R/stabit2.R | 352 +++++++++++++++++++++-------------------- README.md | 4 inst/doc/matching.pdf |binary man/hri.Rd | 15 + man/matchingMarkets-package.Rd | 2 src/RcppExports.cpp | 117 +++++++++++-- src/stabit2Mat0.cpp |only src/stabit2Mat1.cpp | 259 +++++++----------------------- src/stabit2Sel0.cpp |only src/stabit2Sel1.cpp | 264 +++++++----------------------- 15 files changed, 585 insertions(+), 828 deletions(-)
More information about matchingMarkets at CRAN
Permanent link
Title: Randomer Forest
Description: R-RerF (aka Randomer Forest (RerF) or Random Projection
Forests) is an algorithm developed by Tomita (2016) <arXiv:1506.03410v2>
which is similar to Random Forest - Random Combination (Forest-RC)
developed by Breiman (2001) <doi:10.1023/A:1010933404324>. Random
Forests create axis-parallel, or orthogonal trees. That is, the feature
space is recursively split along directions parallel to the axes of the
feature space. Thus, in cases in which the classes seem inseparable
along any single dimension, Random Forests may be suboptimal. To
address this, Breiman also proposed and characterized Forest-RC, which
uses linear combinations of coordinates rather than individual
coordinates, to split along. This package, 'rerf', implements RerF
which is similar to Forest-RC. The difference between the two
algorithms is where the random linear combinations occur: Forest-RC
combines features at the per tree level whereas RerF takes linear
combinations of coordinates at every node in the tree.
Author: Jesse Patsolic [ctb, cre],
Benjamin Falk [ctb],
Jaewon Chung [ctb],
James Browne [aut],
Tyler Tomita [aut],
Joshua Vogelstein [ths]
Maintainer: Jesse Patsolic <software@neurodata.io>
Diff between rerf versions 1.1.3 dated 2018-07-29 and 2.0.2 dated 2018-12-04
rerf-1.1.3/rerf/R/RandMatCat.R |only rerf-1.1.3/rerf/man/RandMat.Rd |only rerf-1.1.3/rerf/man/RandMatCat.Rd |only rerf-2.0.2/rerf/DESCRIPTION | 66 +- rerf-2.0.2/rerf/LICENSE |only rerf-2.0.2/rerf/MD5 | 97 +-- rerf-2.0.2/rerf/NAMESPACE | 50 + rerf-2.0.2/rerf/NEWS.md |only rerf-2.0.2/rerf/R/BuildTree.R | 686 +++++++++++----------- rerf-2.0.2/rerf/R/ComputeSimilarity.R | 139 ++-- rerf-2.0.2/rerf/R/FeatureImportance.R | 28 rerf-2.0.2/rerf/R/OOBPredict.R | 94 --- rerf-2.0.2/rerf/R/PackForest.R | 108 +-- rerf-2.0.2/rerf/R/PackPredict.R | 30 rerf-2.0.2/rerf/R/Predict.R | 152 ++-- rerf-2.0.2/rerf/R/RandMat.R | 808 +++++++++++++++++++------- rerf-2.0.2/rerf/R/RandRot.R | 16 rerf-2.0.2/rerf/R/RankInterpolate.R | 10 rerf-2.0.2/rerf/R/RankInterpolateVector.R | 92 +- rerf-2.0.2/rerf/R/RankMatrix.R | 14 rerf-2.0.2/rerf/R/RerF.R | 291 +++++---- rerf-2.0.2/rerf/R/RunFeatureImportance.R | 5 rerf-2.0.2/rerf/R/RunOOB.R | 54 - rerf-2.0.2/rerf/R/RunPredict.R | 87 +- rerf-2.0.2/rerf/R/RunPredictLeaf.R | 76 +- rerf-2.0.2/rerf/R/SampleMode.R | 8 rerf-2.0.2/rerf/R/StrCorr.R | 67 +- rerf-2.0.2/rerf/R/Urerf.R |only rerf-2.0.2/rerf/R/UrerfHelperFunctions.R |only rerf-2.0.2/rerf/R/mnist-data.R | 2 rerf-2.0.2/rerf/README.md | 584 +++++++++++------- rerf-2.0.2/rerf/data/mnist.RData |binary rerf-2.0.2/rerf/man/BuildTree.Rd | 37 - rerf-2.0.2/rerf/man/ComputeSimilarity.Rd | 3 rerf-2.0.2/rerf/man/FeatureImportance.Rd | 1 rerf-2.0.2/rerf/man/GrowUnsupervisedForest.Rd |only rerf-2.0.2/rerf/man/OOBPredict.Rd | 10 rerf-2.0.2/rerf/man/PackPredict.Rd | 11 rerf-2.0.2/rerf/man/Predict.Rd | 17 rerf-2.0.2/rerf/man/RandMatBinary.Rd |only rerf-2.0.2/rerf/man/RandMatContinuous.Rd |only rerf-2.0.2/rerf/man/RandMatCustom.Rd |only rerf-2.0.2/rerf/man/RandMatFRC.Rd |only rerf-2.0.2/rerf/man/RandMatFRCN.Rd |only rerf-2.0.2/rerf/man/RandMatImageControl.Rd |only rerf-2.0.2/rerf/man/RandMatImagePatch.Rd |only rerf-2.0.2/rerf/man/RandMatPoisson.Rd |only rerf-2.0.2/rerf/man/RandMatRF.Rd |only rerf-2.0.2/rerf/man/RandMatTSpatch.Rd |only rerf-2.0.2/rerf/man/RerF.Rd | 58 + rerf-2.0.2/rerf/man/RunOOB.Rd | 2 rerf-2.0.2/rerf/man/StrCorr.Rd | 3 rerf-2.0.2/rerf/man/TwoMeansCut.Rd |only rerf-2.0.2/rerf/man/Urerf.Rd |only rerf-2.0.2/rerf/man/checkInputMatrix.Rd |only rerf-2.0.2/rerf/man/defaults.Rd |only rerf-2.0.2/rerf/man/makeAB.Rd |only rerf-2.0.2/rerf/tests |only 58 files changed, 2172 insertions(+), 1534 deletions(-)
Title: Joint Analysis and Imputation of Incomplete Data
Description: Provides joint analysis and imputation of (generalized)
linear regression models, (generalized) linear mixed models and parametric
survival models with incomplete (covariate) data in the Bayesian framework.
The package performs some preprocessing of the data and creates a 'JAGS'
model, which will then automatically be passed to 'JAGS'
<http://mcmc-jags.sourceforge.net> with the help of
the package 'rjags'.
It also provides summary and plotting functions for the output.
Author: Nicole S. Erler [aut, cre] (<https://orcid.org/0000-0002-9370-6832>)
Maintainer: Nicole S. Erler <n.erler@erasmusmc.nl>
Diff between JointAI versions 0.3.0 dated 2018-08-14 and 0.4.0 dated 2018-12-04
DESCRIPTION | 18 - MD5 | 122 ++++++----- NAMESPACE | 6 NEWS.md | 70 ++++++ R/JointAI.R | 34 ++- R/JointAIObject.R | 3 R/analysismodel_glme.R |only R/analysismodel_surv.R |only R/build_model.R | 13 + R/convergence_criteria.R | 9 R/divide_matrices.R | 43 ++- R/get_MIdat.R | 17 + R/get_coef_names.R | 5 R/get_data_list.R | 66 +++++- R/get_imp_method.R | 75 ++++-- R/get_inits.R | 18 + R/get_model_dimensions.R | 6 R/get_params.R | 26 -- R/get_refs.R | 74 +++--- R/helpfunctions.R | 34 ++- R/helpfunctions_post.R | 60 ----- R/model_imp.R | 350 ++++++++++++++++++++++++++++++-- R/plots.R | 128 +++++------ R/predict.R | 38 +-- R/print_functions.R | 97 ++++++-- R/rescale.R | 16 - R/simLong.R | 6 R/summary.JointAI.R | 254 +++++++++++++++++++---- README.md | 120 ++++++++++ build/vignette.rds |binary data/simLong.RData |binary data/simWide.RData |binary inst/Ideas.html |only inst/Ideas.md |only inst/doc/AfterFitting.R |only inst/doc/AfterFitting.Rmd |only inst/doc/AfterFitting.html |only inst/doc/MCMCsettings.R |only inst/doc/MCMCsettings.Rmd |only inst/doc/MCMCsettings.html |only inst/doc/MinimalExample.R | 9 inst/doc/MinimalExample.Rmd | 46 +++- inst/doc/MinimalExample.html | 70 +++--- inst/doc/ModelSpecification.R | 31 -- inst/doc/ModelSpecification.Rmd | 208 ++++++++++++++----- inst/doc/ModelSpecification.html | 211 +++++++++++++------ inst/doc/SelectingParameters.R | 11 - inst/doc/SelectingParameters.Rmd | 22 +- inst/doc/SelectingParameters.html | 153 +++++++------ inst/doc/VisualizingIncompleteData.html | 14 - man/GR_crit.Rd | 9 man/JointAI.Rd | 35 ++- man/JointAIObject.Rd | 3 man/densplot.Rd | 4 man/figures |only man/get_MIdat.Rd | 6 man/list_impmodels.Rd | 31 ++ man/model_imp.Rd | 103 ++++++++- man/sharedParams.Rd | 2 man/simLong.Rd | 6 man/summary.JointAI.Rd | 5 man/traceplot.Rd | 5 vignettes/AfterFitting.Rmd |only vignettes/MCMCsettings.Rmd |only vignettes/MinimalExample.Rmd | 46 +++- vignettes/ModelSpecification.Rmd | 208 ++++++++++++++----- vignettes/SelectingParameters.Rmd | 22 +- 67 files changed, 2150 insertions(+), 818 deletions(-)
Title: Tidy, Type-Safe 'prediction()' Methods
Description: A one-function package containing 'prediction()', a type-safe alternative to 'predict()' that always returns a data frame. The package currently supports common model types (e.g., "lm", "glm") from the 'stats' package, as well as numerous other model classes from other add-on packages. See the README or main package documentation page for a complete listing.
Author: Thomas J. Leeper [aut, cre] (<https://orcid.org/0000-0003-4097-6326>),
Carl Ganz [ctb]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between prediction versions 0.3.6 dated 2018-05-22 and 0.3.6.1 dated 2018-12-04
DESCRIPTION | 18 +++++++++--------- MD5 | 4 ++-- man/prediction.Rd | 2 +- 3 files changed, 12 insertions(+), 12 deletions(-)