Title: An Alternative Display for Profiling Information
Description: An alternative data structure and visual rendering
for the profiling information generated by Rprof.
Author: Hadley Wickham [aut, cre]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between profr versions 0.3.1 dated 2014-04-22 and 0.3.3 dated 2018-12-05
DESCRIPTION | 29 +++++++++++++++++------------ MD5 | 24 ++++++++++++------------ NAMESPACE | 9 +++++++-- NEWS | 12 ++++++++++++ R/output.r | 35 +++++++++++++++++++++++++---------- R/parse.r | 21 +++++++++++++++++++++ R/profile.r | 9 ++++++--- README.md | 16 +--------------- man/ggplot.profr.Rd | 4 ++-- man/parse_rprof.Rd | 4 ++-- man/plot.profr.Rd | 4 ++-- man/profr.Rd | 4 ++-- man/sample-data.Rd | 6 +++--- 13 files changed, 112 insertions(+), 65 deletions(-)
Title: Robust Data Analysis Through Monitoring and Dynamic
Visualization
Description: Provides interface to the 'MATLAB' toolbox 'Flexible Statistical Data Analysis
(FSDA)' which is a comprehensive and computationally efficient
software package for robust statistics in regression, multivariate
and categorical data analysis. The current R version implements tools
for regression: (forward search, S- and MM-estimation, least trimmed
squares (LTS) and least median of squares (LMS)). The distinctive
feature of our regression package relies in the possibility of
monitoring the statistics of interest as function of breakdown point,
efficiency or subset size, depending on the estimator. This is
accompanied by a rich set of graphical features, such as dynamic
brushing, linking, particularly useful for exploratory data analysis.
Author: Valentin Todorov [aut, cre],
Emmanuele Sordini [aut],
Aldo Corbellini [ctb],
Francesca Torti [ctb],
Marco Riani [ctb],
Domenico Perrotta [ctb],
Andrea Cerioli [ctb]
Maintainer: Valentin Todorov <valentin.todorov@chello.at>
Diff between fsdaR versions 0.2-21 dated 2017-12-12 and 0.4-4 dated 2018-12-05
ChangeLog | 24 ++++ DESCRIPTION | 35 ++++--- MD5 | 80 +++++++++++++--- NAMESPACE | 28 ++++- R/FSR_control.R | 57 +++++++---- R/corfwdplot.R |only R/fsmmmdrs.R |only R/fsmult-methods.R |only R/fsmult.R |only R/fsreg.R | 1 R/internal.R | 205 ++++++++++++++++++++++++++++++++++-------- R/malfwdplot.R |only R/malindexplot.R |only R/mdrplot.R | 3 R/mmdplot.R |only R/mmdrsplot.R |only R/mmmult.R |only R/resfwdplot.R | 106 ++++++++++++--------- R/resindexplot.R | 100 ++++++++++++++++++++ R/smult.R |only R/tclust.R |only R/tclustIC.R |only R/tclustICplot.R |only data/diabetes.rda |only data/swissbanknotes.rda |only data/swissheads.rda |only inst/java/fsda4java.jar |binary inst/java/r_fsda.jar |binary inst/work/A-Bug.R |only inst/work/crash.R |only inst/work/create-datasets.R | 71 ++++++++++++-- inst/work/demo-SB.R |only inst/work/demo-fsdaR.R |only inst/work/mult-test.R |only inst/work/test-corfwdplot.R |only inst/work/test-fsmult.R |only inst/work/test-mmdrsplot.R |only inst/work/test-resindexplot.R |only inst/work/test-smult.R |only inst/work/test-tclust.R |only inst/work/test-tclustIC.R |only man/MMreg_control.Rd | 3 man/corfwdplot.Rd |only man/diabetes.Rd |only man/fsmeda.object.Rd |only man/fsmmmdrs.Rd |only man/fsmmmdrs.object.Rd |only man/fsmult.Rd |only man/fsmult.object.Rd |only man/fsreg.Rd | 1 man/malfwdplot.Rd |only man/malindexplot.Rd |only man/mdrplot.Rd | 85 ++++++++++++++--- man/mmdplot.Rd |only man/mmdrsplot.Rd |only man/mmmult.Rd |only man/mmmult.object.Rd |only man/mmmulteda.object.Rd |only man/resfwdplot.Rd | 4 man/resindexplot.Rd |only man/smult.Rd |only man/smult.object.Rd |only man/smulteda.object.Rd |only man/swissbanknotes.Rd |only man/swissheads.Rd |only 65 files changed, 636 insertions(+), 167 deletions(-)
Title: Regularized PQL for Joint Selection in GLMMs
Description: Performs joint selection in Generalized Linear Mixed Models (GLMMs) using penalized likelihood methods. Specifically, the Penalized Quasi-Likelihood (PQL) is used as a loss function, and penalties are then augmented to perform simultaneous fixed and random effects selection. Regularized PQL avoids the need for integration (or approximations such as the Laplace's method) during the estimation process, and so the full solution path for model selection can be constructed relatively quickly.
Author: Francis K.C. Hui <fhui28@gmail.com>, with contributions from Samuel Mueller <samuel.mueller@sydney.edu.au> and A.H. Welsh <Alan.Welsh@anu.edu.au>
Maintainer: Francis Hui <fhui28@gmail.com>
Diff between rpql versions 0.6 dated 2018-04-23 and 0.7 dated 2018-12-05
DESCRIPTION | 12 MD5 | 29 - R/auxilaryfunctions.R | 3 R/rpql-main.R | 1187 +++++++++++++++++++++++++------------------------ build |only man/build.start.fit.Rd | 8 man/calc.marglogL.Rd | 6 man/gendat.glmm.Rd | 10 man/lseq.Rd | 6 man/nb2.Rd | 6 man/rpql-package.Rd | 6 man/rpql.Rd | 24 man/rpqlseq.Rd | 6 man/summary.rpql.Rd | 6 src/Makevars | 7 src/Makevars.win | 7 16 files changed, 691 insertions(+), 632 deletions(-)
Title: Discriminating Well Surveyed Spatial Units from Exhaustive
Biodiversity Databases
Description: It uses species accumulation curves and diverse estimators to assess, at the same time, the levels of survey coverage in multiple geographic cells of a size defined by the user or polygons. It also enables the geographical depiction of observed species richness, survey effort and completeness values including a background with administrative areas.
Author: Cástor Guisande González and Jorge M. Lobo
Maintainer: Cástor Guisande González <castor@uvigo.es>
Diff between KnowBR versions 1.8 dated 2018-06-22 and 1.9 dated 2018-12-05
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- data/Beetles.RData |binary data/Estimators.RData |binary data/RFishes.RData |binary data/States.RData |binary data/adworld.RData |binary man/KnowB.Rd | 7 +++++-- man/KnowBPolygon.Rd | 9 +++++++-- man/MapPolygon.Rd | 3 ++- man/SurveyQ.Rd | 9 ++++++--- 11 files changed, 33 insertions(+), 21 deletions(-)
Title: Finding Rhythms Using Extended Circadian Harmonic Oscillators
(ECHO)
Description: Provides a function (echo_find()) designed to find rhythms
from data using extended harmonic oscillators. For more information,
see H. De los Santos et al. (2017) <doi:10.1145/3107411.3107420> .
Author: Hannah De los Santos [aut, cre],
Emily Collins [aut],
Jonathan Shewchuk [ctb],
E.F. Harding [ctb],
Kristin Bennett [aut],
Jennifer Hurley [aut]
Maintainer: Hannah De los Santos <delosh@rpi.edu>
Diff between echo.find versions 1.3.1 dated 2018-08-15 and 2.0 dated 2018-12-05
DESCRIPTION | 8 +- MD5 | 22 +++---- NAMESPACE | 1 R/echo_package_functions.R | 33 +++++++---- R/echo_utils.R | 60 ++++++++++++-------- build/vignette.rds |binary inst/CITATION | 8 +- inst/doc/echo-vignette.R | 10 +-- inst/doc/echo-vignette.Rmd | 10 +-- inst/doc/echo-vignette.html | 128 ++++++++++++++++++++++++-------------------- man/echo_find.Rd | 15 +++-- vignettes/echo-vignette.Rmd | 10 +-- 12 files changed, 173 insertions(+), 132 deletions(-)
Title: Fetch 'Phylogenies' from Many Sources
Description: Includes methods for fetching 'phylogenies' from a variety
of sources, including the 'Phylomatic' web service
(<http://phylodiversity.net/phylomatic>), and 'Phylocom'
(<https://github.com/phylocom/phylocom/>).
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between brranching versions 0.3.0 dated 2018-06-19 and 0.4.0 dated 2018-12-05
brranching-0.3.0/brranching/data/tpl.RData |only brranching-0.4.0/brranching/DESCRIPTION | 20 brranching-0.4.0/brranching/MD5 | 51 +- brranching-0.4.0/brranching/NAMESPACE | 2 brranching-0.4.0/brranching/NEWS.md | 15 brranching-0.4.0/brranching/R/brranching-package.R | 33 + brranching-0.4.0/brranching/R/globals.R | 2 brranching-0.4.0/brranching/R/phylomatic.R | 25 - brranching-0.4.0/brranching/R/phylomatic_local.R | 214 +++------- brranching-0.4.0/brranching/R/phylomatic_names.R | 32 + brranching-0.4.0/brranching/R/rbladj.R | 122 +---- brranching-0.4.0/brranching/R/zzz.R | 10 brranching-0.4.0/brranching/README.md | 6 brranching-0.4.0/brranching/build |only brranching-0.4.0/brranching/data/phylomatic_trees.rda |only brranching-0.4.0/brranching/data/tpl.rda |only brranching-0.4.0/brranching/inst/doc |only brranching-0.4.0/brranching/inst/ignore/phylomatic_local.R |only brranching-0.4.0/brranching/inst/ignore/rbladj_old.R |only brranching-0.4.0/brranching/inst/vign |only brranching-0.4.0/brranching/man/brranching-package.Rd | 2 brranching-0.4.0/brranching/man/phylomatic.Rd | 13 brranching-0.4.0/brranching/man/phylomatic_local.Rd | 83 +-- brranching-0.4.0/brranching/man/phylomatic_names.Rd | 32 + brranching-0.4.0/brranching/man/phylomatic_trees.Rd |only brranching-0.4.0/brranching/man/rbladj.Rd | 46 +- brranching-0.4.0/brranching/man/tpl.Rd | 11 brranching-0.4.0/brranching/tests/testthat/test-phylomatic_local.R |only brranching-0.4.0/brranching/tools/img/unnamed-chunk-6-1.png |binary brranching-0.4.0/brranching/vignettes |only 30 files changed, 348 insertions(+), 371 deletions(-)
Title: A Simple Package for Testing R Packages
Description: Provides two convenience functions assert() and test_pkg() to
facilitate testing R packages.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Steven Mortimer [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between testit versions 0.8 dated 2018-06-14 and 0.9 dated 2018-12-05
DESCRIPTION | 18 ++++++++++------- MD5 | 16 +++++++-------- NEWS | 6 +++++ R/testit.R | 7 +++--- R/utils.R | 3 -- README.md | 46 +++++++++++++++++++++++++-------------------- man/has_message.Rd | 5 +++- tests/testit/test-assert.R | 6 +++++ tests/testit/test-utils.R | 10 ++++++++- 9 files changed, 75 insertions(+), 42 deletions(-)
Title: Tidy Temporal Data Frames and Tools
Description: Provides a 'tbl_ts' class (the 'tsibble') to store
and manage temporal data in a data-centric format, which is
built on top of the 'tibble'. The 'tsibble' aims at easily
manipulating and analysing temporal data, including counting and
filling time gaps, aggregate over calendar periods, performing rolling
window calculations, and etc.
Author: Earo Wang [aut, cre] (<https://orcid.org/0000-0001-6448-5260>),
Di Cook [aut, ths] (<https://orcid.org/0000-0002-3813-7155>),
Rob Hyndman [aut, ths] (<https://orcid.org/0000-0002-2140-5352>),
Mitchell O'Hara-Wild [ctb]
Maintainer: Earo Wang <earo.wang@gmail.com>
Diff between tsibble versions 0.6.0 dated 2018-11-27 and 0.6.1 dated 2018-12-05
tsibble-0.6.0/tsibble/tests/testthat/test-fill-na.R |only tsibble-0.6.1/tsibble/DESCRIPTION | 6 - tsibble-0.6.1/tsibble/MD5 | 62 +++++++-------- tsibble-0.6.1/tsibble/NAMESPACE | 9 +- tsibble-0.6.1/tsibble/NEWS.md | 6 + tsibble-0.6.1/tsibble/R/RcppExports.R | 4 tsibble-0.6.1/tsibble/R/as-tsibble.R | 17 +--- tsibble-0.6.1/tsibble/R/dplyr-verbs.R | 30 +++---- tsibble-0.6.1/tsibble/R/filter-index.R | 22 +---- tsibble-0.6.1/tsibble/R/gaps.R | 35 +++++--- tsibble-0.6.1/tsibble/R/interval.R | 11 +- tsibble-0.6.1/tsibble/R/period.R | 4 tsibble-0.6.1/tsibble/R/subset.R | 8 - tsibble-0.6.1/tsibble/R/tsibble-pkg.R | 2 tsibble-0.6.1/tsibble/R/tsibble2ts.R | 11 ++ tsibble-0.6.1/tsibble/inst/doc/faq.R | 6 - tsibble-0.6.1/tsibble/inst/doc/faq.Rmd | 8 - tsibble-0.6.1/tsibble/inst/doc/faq.html | 8 - tsibble-0.6.1/tsibble/inst/doc/implicit-na.Rmd | 2 tsibble-0.6.1/tsibble/inst/doc/implicit-na.html | 2 tsibble-0.6.1/tsibble/inst/doc/intro-tsibble.Rmd | 2 tsibble-0.6.1/tsibble/inst/doc/intro-tsibble.html | 2 tsibble-0.6.1/tsibble/man/tidyverse.Rd | 2 tsibble-0.6.1/tsibble/man/tsibble-package.Rd | 2 tsibble-0.6.1/tsibble/man/tsibble.Rd | 2 tsibble-0.6.1/tsibble/src/RcppExports.cpp | 12 -- tsibble-0.6.1/tsibble/src/utils.cpp | 30 ------- tsibble-0.6.1/tsibble/tests/testthat/test-filter-index.R | 11 ++ tsibble-0.6.1/tsibble/tests/testthat/test-gaps.R |only tsibble-0.6.1/tsibble/tests/testthat/test-join.R | 2 tsibble-0.6.1/tsibble/vignettes/faq.Rmd | 8 - tsibble-0.6.1/tsibble/vignettes/implicit-na.Rmd | 2 tsibble-0.6.1/tsibble/vignettes/intro-tsibble.Rmd | 2 33 files changed, 153 insertions(+), 177 deletions(-)
Title: The Serial Interface Package
Description: Enables reading and writing binary and ASCII data to
RS232/RS422/RS485 or any other virtual serial interfaces of the
computer.
Author: Martin Seilmayer
Maintainer: Martin Seilmayer <m.seilmayer@hzdr.de>
Diff between serial versions 1.3 dated 2017-09-11 and 2.0 dated 2018-12-05
DESCRIPTION | 12 +- MD5 | 19 ++-- NAMESPACE | 25 +++-- R/init.R | 101 ++++++++++++++++-------- R/pkgname.R | 37 ++++++++ R/serial.R | 135 +++++++++++++++++++++++++++++--- man/flush.serialConnection.Rd |only man/read.serialConnection.Rd | 61 ++++++++------ man/serial.Rd | 176 +++++++++++++++++++++++++----------------- man/serialConnection.Rd | 66 +++++++++++---- man/write.serialConnection.Rd | 64 +++++++++------ 11 files changed, 485 insertions(+), 211 deletions(-)
Title: Synthetic Population Generator
Description: Generates high-entropy integer synthetic populations from marginal and (optionally) seed data using quasirandom sampling,
in arbitrary dimensionality (Smith, Lovelace and Birkin (2017) <doi:10.18564/jasss.3550>).
The package also provides an implementation of the Iterative Proportional Fitting (IPF) algorithm (Zaloznik (2011) <doi:10.13140/2.1.2480.9923>).
Author: Andrew Smith [aut, cre],
Steven Johnson [ctb] (Sobol sequence generator implementation),
Massachusetts Institute of Technology [cph] (Sobol sequence generator
implementation),
John Burkhardt [ctb, cph] (C++ implementation of incomplete gamma
function),
G Bhattacharjee [ctb] (Original FORTRAN implementation of incomplete
gamma function)
Maintainer: Andrew Smith <a.p.smith@leeds.ac.uk>
Diff between humanleague versions 2.0.2 dated 2017-12-14 and 2.1.0 dated 2018-12-05
humanleague-2.0.2/humanleague/man/synthPop.Rd |only humanleague-2.0.2/humanleague/man/synthPopG.Rd |only humanleague-2.0.2/humanleague/src/GQIWS.cpp |only humanleague-2.0.2/humanleague/src/GQIWS.h |only humanleague-2.0.2/humanleague/src/QIWS.cpp |only humanleague-2.0.2/humanleague/src/QIWS.h |only humanleague-2.0.2/humanleague/src/TestQIWS.cpp |only humanleague-2.0.2/humanleague/tests/__pycache__/test_all.cpython-35-PYTEST.pyc |only humanleague-2.1.0/humanleague/DESCRIPTION | 8 humanleague-2.1.0/humanleague/MD5 | 76 +-- humanleague-2.1.0/humanleague/NAMESPACE | 4 humanleague-2.1.0/humanleague/R/RcppExports.R | 56 -- humanleague-2.1.0/humanleague/R/humanleague.R | 4 humanleague-2.1.0/humanleague/README.md | 103 +++- humanleague-2.1.0/humanleague/man/humanleague.Rd | 4 humanleague-2.1.0/humanleague/man/integerise.Rd |only humanleague-2.1.0/humanleague/man/ipf.Rd | 4 humanleague-2.1.0/humanleague/man/prob2IntFreq.Rd | 2 humanleague-2.1.0/humanleague/man/qis.Rd | 4 humanleague-2.1.0/humanleague/man/qisi.Rd | 4 humanleague-2.1.0/humanleague/man/unitTest.Rd | 2 humanleague-2.1.0/humanleague/src/DDWR.h | 1 humanleague-2.1.0/humanleague/src/IPF.h | 11 humanleague-2.1.0/humanleague/src/Integerise.cpp | 95 ++++ humanleague-2.1.0/humanleague/src/Integerise.h | 33 + humanleague-2.1.0/humanleague/src/Log.h |only humanleague-2.1.0/humanleague/src/Makevars | 1 humanleague-2.1.0/humanleague/src/Microsynthesis.h | 16 humanleague-2.1.0/humanleague/src/NDArrayUtils.h | 16 humanleague-2.1.0/humanleague/src/QISI.cpp | 12 humanleague-2.1.0/humanleague/src/RcppExports.cpp | 34 - humanleague-2.1.0/humanleague/src/TestIndex.cpp | 43 - humanleague-2.1.0/humanleague/src/TestNDArray.cpp | 3 humanleague-2.1.0/humanleague/src/TestReduce.cpp | 4 humanleague-2.1.0/humanleague/src/TestSlice.cpp | 60 +- humanleague-2.1.0/humanleague/src/TestSobol.cpp | 4 humanleague-2.1.0/humanleague/src/TestStatFuncs.cpp | 4 humanleague-2.1.0/humanleague/src/UnitTester.cpp | 8 humanleague-2.1.0/humanleague/src/UnitTester.h | 3 humanleague-2.1.0/humanleague/src/humanleague_init.c | 9 humanleague-2.1.0/humanleague/src/rcpp_api.cpp | 224 ++-------- humanleague-2.1.0/humanleague/tests/__pycache__/test_all.cpython-36-PYTEST.pyc |only humanleague-2.1.0/humanleague/tests/__pycache__/test_all.cpython-36.pyc |only humanleague-2.1.0/humanleague/tests/test_all.py | 108 +++- humanleague-2.1.0/humanleague/tests/testthat/test-all.R | 91 +--- 45 files changed, 532 insertions(+), 519 deletions(-)
Title: Fuzzy Linear Regression
Description: Estimators for fuzzy linear regression. The functions estimate parameters of
fuzzy linear regression models with crisp or fuzzy independent variables (triangular
fuzzy numbers are supported). Implements multiple methods for parameter estimation and
algebraic operations with triangular fuzzy numbers. Includes functions for
summarising, printing and plotting the model fit. Calculates predictions from the
model and total error of fit.
Diamond (1988) <doi:10.1016/0020-0255(88)90047-3>,
Hung & Yang (2006) <doi:10.1016/j.fss.2006.08.004>,
Lee & Tanaka (1999) <doi:10.15807/jorsj.42.98>,
Nasrabadi, Nasrabadi & Nasrabady (2005) <doi:10.1016/j.amc.2004.02.008>,
Tanaka, Hayashi & Watada (1989) <doi:10.1016/0377-2217(89)90431-1>.
Author: Pavel Skrabanek [aut, cph],
Natalia Martinkova [aut, cre, cph]
Maintainer: Natalia Martinkova <martinkova@ivb.cz>
Diff between fuzzyreg versions 0.4 dated 2018-10-14 and 0.4.1 dated 2018-12-05
DESCRIPTION | 10 MD5 | 74 +++-- NAMESPACE | 50 +-- NEWS | 8 R/TEF.r | 2 R/data.R | 34 ++ R/dom.r | 7 R/fuzzylm.R | 4 R/moflr.R | 178 +++++++------- build/vignette.rds |binary data/bats.rda |only inst/doc/GettingStarted.R | 426 +++++++++++++++++----------------- inst/doc/GettingStarted.Rnw | 32 +- inst/doc/GettingStarted.pdf |binary man/TEF.Rd | 82 +++--- man/bats.Rd |only man/diamond.Rd | 84 +++--- man/dom.Rd | 51 ++-- man/fls.Rd | 94 +++---- man/fuzzydat.Rd | 78 +++--- man/fuzzylm.Rd | 156 ++++++------ man/hung.Rd | 96 +++---- man/lee.Rd | 108 ++++---- man/moflr.Rd | 114 ++++----- man/nasrabadi.Rd | 108 ++++---- man/oplr.Rd | 106 ++++---- man/plot.fuzzylm.Rd | 104 ++++---- man/plr.Rd | 100 +++---- man/plrls.Rd | 118 ++++----- man/predict.fuzzylm.Rd | 60 ++-- man/print.fuzzylm.Rd | 48 +-- man/print.summary.fuzzylm.Rd | 50 +-- man/prodFuzzy.Rd | 54 ++-- man/prodSfuzzy.Rd | 62 ++-- man/sumFuzzy.Rd | 54 ++-- man/summary.fuzzylm.Rd | 54 ++-- man/tanaka.Rd | 90 +++---- tests/testthat/test_correctSolution.R | 10 vignettes/GettingStarted.Rnw | 32 +- 39 files changed, 1402 insertions(+), 1336 deletions(-)
Title: Modelling Dependence with Multivariate Archimax (or any
User-Defined Continuous) Copulas
Description: Archimax copulas are mixture of Archimedean and EV copulas. The package provides definitions of several parametric families of generator and dependence function, computes CDF and PDF, estimates parameters, tests for goodness of fit, generates random sample and checks copula properties for custom constructs. In 2-dimensional case explicit formulas for density are used, in the contrary to higher dimensions when all derivatives are linearly approximated. Several non-archimax families (normal, FGM, Plackett) are provided as well.
Author: Tomas Bacigal
Maintainer: Tomas Bacigal <bacigal@math.sk>
Diff between acopula versions 0.9.2 dated 2013-07-31 and 0.9.3 dated 2018-12-05
acopula-0.9.2/acopula/acopula-Ex.R |only acopula-0.9.3/acopula/DESCRIPTION | 12 ++++++------ acopula-0.9.3/acopula/MD5 | 13 ++++++------- acopula-0.9.3/acopula/NAMESPACE | 8 ++++++++ acopula-0.9.3/acopula/NEWS | 8 +++++++- acopula-0.9.3/acopula/R/acopula.r | 6 +++--- acopula-0.9.3/acopula/inst/doc/acopula-userguide_0.9.2.pdf |binary acopula-0.9.3/acopula/man/xCopula.Rd | 8 ++++---- 8 files changed, 34 insertions(+), 21 deletions(-)
Title: Uncertainty Propagation for R Vectors
Description: Support for measurement errors in R vectors, matrices and arrays:
automatic uncertainty propagation and reporting.
Author: Iñaki Ucar [aut, cph, cre] (<https://orcid.org/0000-0001-6403-5550>)
Maintainer: Iñaki Ucar <iucar@fedoraproject.org>
Diff between errors versions 0.3.0 dated 2018-07-26 and 0.3.1 dated 2018-12-05
DESCRIPTION | 13 ++--- MD5 | 41 +++++++++-------- NAMESPACE | 13 ++++- NEWS.md | 99 ++++++++++++++++++++++++++++--------------- R/correl.R | 65 ++++++++++++++++------------ R/data.R | 13 +++++ R/errors.R | 59 +++++++++++++++++++++++++ R/misc.R | 11 +++- R/print.R | 2 R/summary.R | 6 +- R/utils.R | 9 --- data/GUM.H.3.rda |only man/as.data.frame.errors.Rd | 3 - man/correl.Rd | 35 ++++++--------- man/datasets.Rd | 13 +++++ man/errors-package.Rd | 41 +++++++++++++++++ man/errors.Rd | 5 -- man/mean.errors.Rd | 2 man/tibble.Rd | 1 tests/testthat/test-correl.R | 44 ++++++++++--------- tests/testthat/test-errors.R | 12 +++++ tests/testthat/test-misc.R | 6 +- 22 files changed, 334 insertions(+), 159 deletions(-)
Title: Empirical Mode Decomposition and Hilbert Spectral Analysis
Description: For multiscale analysis, this package carries out empirical mode decomposition and Hilbert spectral
analysis. For usage of EMD, see Kim and Oh, 2009 (Kim, D and Oh, H.-S. (2009) EMD: A Package for Empirical
Mode Decomposition and Hilbert Spectrum, The R Journal, 1, 40-46).
Author: Donghoh Kim [aut, cre],
Hee-Seok Oh [aut]
Maintainer: Donghoh Kim <donghoh.kim@gmail.com>
Diff between EMD versions 1.5.7 dated 2014-01-31 and 1.5.8 dated 2018-12-05
DESCRIPTION | 16 ++++++++------- MD5 | 38 +++++++++++++++++------------------ NAMESPACE | 13 +++++++----- R/EMD2d.R | 11 ++++------ R/Hilbert.R | 6 ++--- data/beryllium.rda |binary data/kospi200.rda |binary data/lena.rda |binary data/lennon.rda |binary data/solar.hs.rda |binary data/solar.lean.rda |binary data/sunspot.rda |binary man/EMD-internal.Rd | 5 ++-- man/emd2d.Rd | 17 +++++++++------- man/emddenoise.Rd | 11 ++++++++-- man/extractimf2d.Rd | 3 +- man/extrema2dC.Rd | 14 ++++++------- man/imageEMD.Rd | 6 +++-- man/semd.Rd | 55 ++++++++++++++++++++++++++-------------------------- src/extrema2dC.c | 12 +++++++++++ 20 files changed, 119 insertions(+), 88 deletions(-)
Title: Convert Statistical Analysis Objects into Tidy Tibbles
Description: Summarizes key information about statistical
objects in tidy tibbles. This makes it easy to report results, create
plots and consistently work with large numbers of models at once.
Broom provides three verbs that each provide different types of
information about a model. tidy() summarizes information about model
components such as coefficients of a regression. glance() reports
information about an entire model, such as goodness of fit measures
like AIC and BIC. augment() adds information about individual
observations to a dataset, such as fitted values or influence
measures.
Author: David Robinson [aut],
Alex Hayes [aut, cre] (<https://orcid.org/0000-0002-4985-5160>),
Matthieu Gomez [ctb],
Boris Demeshev [ctb],
Dieter Menne [ctb],
Benjamin Nutter [ctb],
Luke Johnston [ctb],
Ben Bolker [ctb],
Francois Briatte [ctb],
Jeffrey Arnold [ctb],
Jonah Gabry [ctb],
Luciano Selzer [ctb],
Gavin Simpson [ctb],
Jens Preussner [ctb],
Jay Hesselberth [ctb],
Hadley Wickham [ctb],
Matthew Lincoln [ctb],
Alessandro Gasparini [ctb],
Lukasz Komsta [ctb],
Frederick Novometsky [ctb],
Wilson Freitas [ctb],
Michelle Evans [ctb],
Jason Cory Brunson [ctb],
Simon Jackson [ctb],
Ben Whalley [ctb],
Michael Kuehn [ctb],
Jorge Cimentada [ctb],
Erle Holgersen [ctb],
Karl Dunkle Werner [ctb]
Maintainer: Alex Hayes <alexpghayes@gmail.com>
Diff between broom versions 0.5.0 dated 2018-07-17 and 0.5.1 dated 2018-12-05
broom-0.5.0/broom/man/augment.Rd |only broom-0.5.0/broom/man/glance.Rd |only broom-0.5.0/broom/man/tidy.Rd |only broom-0.5.1/broom/DESCRIPTION | 181 +++++-- broom-0.5.1/broom/MD5 | 38 - broom-0.5.1/broom/NAMESPACE | 3 broom-0.5.1/broom/NEWS.md | 7 broom-0.5.1/broom/R/base-tidiers.R | 2 broom-0.5.1/broom/R/broom.R | 46 - broom-0.5.1/broom/R/lavaan-tidiers.R | 5 broom-0.5.1/broom/R/sp-tidiers.R | 4 broom-0.5.1/broom/R/stats-tidiers.R | 2 broom-0.5.1/broom/inst/doc/adding-tidiers.html | 362 +++++++++++--- broom-0.5.1/broom/inst/doc/available-methods.html | 189 +++++++ broom-0.5.1/broom/inst/doc/bootstrapping.html | 533 +++++++++++++++------- broom-0.5.1/broom/inst/doc/broom.html | 450 +++++++++++++----- broom-0.5.1/broom/inst/doc/broom_and_dplyr.html | 464 +++++++++++++------ broom-0.5.1/broom/inst/doc/glossary.html | 190 +++++++ broom-0.5.1/broom/inst/doc/kmeans.html | 406 ++++++++++++---- broom-0.5.1/broom/man/reexports.Rd |only broom-0.5.1/broom/man/tidy.table.Rd | 2 broom-0.5.1/broom/tests/testthat/test-base.R | 2 22 files changed, 2177 insertions(+), 709 deletions(-)
Title: Measurement Units for R Vectors
Description: Support for measurement units in R vectors, matrices
and arrays: automatic propagation, conversion, derivation
and simplification of units; raising errors in case of unit
incompatibility. Compatible with the POSIXct, Date and difftime
classes. Uses the UNIDATA udunits library and unit database for
unit compatibility checking and conversion.
Author: Edzer Pebesma [aut, cre] (<https://orcid.org/0000-0001-8049-7069>),
Thomas Mailund [aut],
Tomasz Kalinowski [aut],
James Hiebert [ctb],
Iñaki Ucar [ctb] (<https://orcid.org/0000-0001-6403-5550>)
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between units versions 0.6-1 dated 2018-09-21 and 0.6-2 dated 2018-12-05
DESCRIPTION | 8 +- MD5 | 32 +++++----- NAMESPACE | 20 ++++-- NEWS.md | 7 +- R/init.R | 5 + R/math.R | 79 ++++++++++++++++++------- R/misc.R | 16 ++++- R/mixed.R | 2 R/options.R | 89 +++++++++++++---------------- R/symbolic_units.R | 11 --- configure | 32 +++------- inst/CITATION | 2 inst/doc/measurement_units_in_R.html | 8 +- inst/doc/units.html | 107 +++++++++++++++++------------------ man/Math.units.Rd | 50 ++++++++++++++-- man/units_options.Rd | 4 - tests/testthat/test_math.R | 48 +++++++++------ 17 files changed, 300 insertions(+), 220 deletions(-)
Title: Multi-Data-Driven Sparse PLS Robust to Missing Samples
Description: Allows to build Multi-Data-Driven Sparse PLS models. Multi-blocks with
high-dimensional settings are particularly sensible to this.
Author: Hadrien Lorenzo [aut, cre]
Maintainer: Hadrien Lorenzo <hadrien.lorenzo.2015@gmail.com>
Diff between ddsPLS versions 1.0.4 dated 2018-11-29 and 1.0.5 dated 2018-12-05
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/perf_mddsPLS.R | 1 - R/plot.perf_mddsPLS.R | 2 +- build/partial.rdb |binary inst/doc/ddsPLS.html | 4 ++-- 6 files changed, 11 insertions(+), 12 deletions(-)
Title: Network Visualization using 'vis.js' Library
Description: Provides an R interface to the 'vis.js' JavaScript charting
library. It allows an interactive visualization of networks.
Author: Almende B.V. [aut, cph] (vis.js library in htmlwidgets/lib,
http://visjs.org, http://www.almende.com/home),
Benoit Thieurmel [aut, cre] (R interface),
Titouan Robert [aut, ctb]
Maintainer: Benoit Thieurmel <benoit.thieurmel@datastorm.fr>
Diff between visNetwork versions 2.0.4 dated 2018-06-14 and 2.0.5 dated 2018-12-05
DESCRIPTION | 8 MD5 | 44 +- NEWS | 12 R/visClustering.R | 15 R/visCollapse.R | 14 R/visIgraphLayout.R | 4 R/visInteraction.R | 9 R/visNetwork.R | 2 R/visNodes.R | 1 R/visOptions.R | 72 +++ R/visTree.R | 8 R/visTreeModule.R | 6 inst/doc/Introduction-to-visNetwork.html | 95 ++-- inst/htmlwidgets/visNetwork.js | 534 +++++++++++++++++++++++---- inst/shiny/src/server/options_server.R | 8 inst/shiny/src/server/proxy_options_server.R | 11 inst/shiny/src/ui/options_ui.R | 8 inst/shiny/src/ui/proxy_options_ui.R | 2 inst/tests/shiny_collapsed/app.R | 79 +-- man/visClusteringByGroup.Rd | 4 man/visInteraction.Rd | 9 man/visNetwork-collapse.Rd | 9 man/visOptions.Rd | 30 + 23 files changed, 745 insertions(+), 239 deletions(-)
Title: A Toolkit for Using Whole Building Simulation Program
'EnergyPlus'
Description: A rich toolkit of using the whole building simulation program
'EnergyPlus'(<https://energyplus.net>), which enables programmatic
navigation, modification of 'EnergyPlus' models and makes it less painful to
do parametric simulations and analysis.
Author: Hongyuan Jia [aut, cre] (<https://orcid.org/0000-0002-0075-8183>)
Maintainer: Hongyuan Jia <hongyuanjia@cqu.edu.cn>
Diff between eplusr versions 0.9.3 dated 2018-10-11 and 0.9.4 dated 2018-12-05
DESCRIPTION | 10 LICENSE |only MD5 | 46 NAMESPACE | 1 NEWS.md | 42 R/constants.R | 93 - R/eplusr.R | 53 R/epw.R | 120 ++ R/format.R | 13 R/idd.R | 4 R/idd_object.R | 2 R/idf.R | 13 R/idf_object.R | 4 R/impl.R | 122 +- R/param.R | 6 R/run.R | 11 R/sysdata.rda |only README.md | 4 inst/doc/eplusr.R | 32 inst/doc/eplusr.Rmd | 48 inst/doc/eplusr.html | 2661 +++++++++++++++++++--------------------------- man/download_weather.Rd |only tests/testthat/test_idd.R | 1 tests/testthat/test_idf.R | 5 vignettes/eplusr.Rmd | 48 vignettes/eplusr.md |only 26 files changed, 1631 insertions(+), 1708 deletions(-)
Title: Spatially Varying Change Points
Description: Implements a spatially varying change point model with
unique intercepts, slopes, variance intercepts and slopes, and
change points at each location. Inference is within the
Bayesian setting using Markov chain Monte Carlo (MCMC). The
response variable can be modeled as Gaussian (no nugget),
probit or Tobit link and the five spatially varying parameter
are modeled jointly using a multivariate conditional
autoregressive (MCAR) prior. The MCAR is a unique process that
allows for a dissimilarity metric to dictate the local spatial
dependencies. Full details of the package can be found in the accompanying vignette.
Furthermore, the details of the package can be found in the corresponding paper on arXiv
by Berchuck et al (2018): "A spatially varying change points model for monitoring glaucoma
progression using visual field data", <arXiv:1811.11038>.
Author: Samuel I. Berchuck [aut, cre]
Maintainer: Samuel I. Berchuck <sib2@duke.edu>
Diff between spCP versions 1.1 dated 2018-11-28 and 1.2 dated 2018-12-05
DESCRIPTION | 8 ++++---- MD5 | 7 ++++--- inst/doc/spCP-example.html | 4 ++-- man/figures |only src/Makevars | 8 ++++---- 5 files changed, 14 insertions(+), 13 deletions(-)
Title: Tidy Data Validation Reports
Description: Tools for creating data validation pipelines and tidy reports. This
package offers a framework for exploring and validating data frame like
objects using 'dplyr' grammar of data manipulation.
Author: Evgeni Chasnovski [aut, cre]
Maintainer: Evgeni Chasnovski <evgeni.chasnovski@gmail.com>
Diff between ruler versions 0.1.3 dated 2018-05-20 and 0.1.4 dated 2018-12-05
DESCRIPTION | 13 ++++----- MD5 | 50 +++++++++++++++++------------------ NEWS.md | 4 ++ R/expose.R | 14 ++++----- R/exposure.R | 6 ++-- R/spread-groups.R | 2 - R/utils.R | 8 +++++ inst/doc/design-and-format.html | 4 +- inst/doc/rule-packs.html | 6 ++-- inst/doc/validation.html | 5 ++- man/cell-pack.Rd | 15 +++------- man/column-pack.Rd | 6 +--- man/data-pack.Rd | 6 +--- man/expose.Rd | 13 ++++----- man/group-pack.Rd | 6 +--- man/pack_info.Rd | 3 -- man/row-pack.Rd | 12 ++------ man/rule-packs.Rd | 6 +--- man/ruler-package.Rd | 4 +- man/spread_groups.Rd | 5 +-- tests/testthat/helper-expose-data.R | 26 +++++++++--------- tests/testthat/test-expose-helpers.R | 4 +- tests/testthat/test-expose.R | 24 ++++++++-------- tests/testthat/test-exposure.R | 18 ++++++------ tests/testthat/test-spread-groups.R | 4 +- tests/testthat/test-utils.R | 9 ++++++ 26 files changed, 138 insertions(+), 135 deletions(-)
Title: Deployment Interface for R Markdown Documents and Shiny
Applications
Description: Programmatic deployment interface for 'RPubs', 'shinyapps.io', and
'RStudio Connect'. Supported content types include R Markdown documents,
Shiny applications, Plumber APIs, plots, and static web content.
Author: JJ Allaire
Maintainer: Jonathan McPherson <jonathan@rstudio.com>
Diff between rsconnect versions 0.8.11 dated 2018-11-12 and 0.8.12 dated 2018-12-05
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/accounts.R | 4 +++- R/bundle.R | 3 ++- R/http.R | 37 ++++++++++++++++++++++++++----------- man/options.Rd | 1 + 6 files changed, 40 insertions(+), 21 deletions(-)
Title: Quantity Calculus for R Vectors
Description: Integration of the 'units' and 'errors' packages for a complete quantity
calculus system for R vectors, matrices and arrays, with automatic propagation,
conversion, derivation and simplification of magnitudes and uncertainties.
Author: Iñaki Ucar [aut, cph, cre] (<https://orcid.org/0000-0001-6403-5550>)
Maintainer: Iñaki Ucar <iucar@fedoraproject.org>
Diff between quantities versions 0.1.1 dated 2018-09-30 and 0.1.2 dated 2018-12-05
DESCRIPTION | 8 MD5 | 16 NAMESPACE | 9 NEWS.md | 4 R/misc.R | 18 README.md | 6 build/vignette.rds |binary inst/doc/introduction.html | 1196 ++++++++++++++++++++++----------------------- inst/doc/parsing.html | 546 ++++++++------------ 9 files changed, 857 insertions(+), 946 deletions(-)
Title: Execute and Control System Processes
Description: Tools to run system processes in the background.
It can check if a background process is running; wait on a background
process to finish; get the exit status of finished processes; kill
background processes. It can read the standard output and error of
the processes, using non-blocking connections. 'processx' can poll
a process for standard output or error, with a timeout. It can also
poll several processes at once.
Author: Gábor Csárdi [aut, cre, cph] (<https://orcid.org/0000-0001-7098-9676>),
Winston Chang [aut],
RStudio [cph, fnd],
Mango Solutions [cph, fnd]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between processx versions 3.2.0 dated 2018-08-16 and 3.2.1 dated 2018-12-05
processx-3.2.0/processx/inst/NEWS.md |only processx-3.2.0/processx/inst/README.markdown |only processx-3.2.1/processx/DESCRIPTION | 12 +-- processx-3.2.1/processx/MD5 | 48 ++++++++------- processx-3.2.1/processx/NAMESPACE | 13 ++-- processx-3.2.1/processx/NEWS.md |only processx-3.2.1/processx/R/aaassertthat.R |only processx-3.2.1/processx/R/assertions.R | 3 processx-3.2.1/processx/R/base64.R |only processx-3.2.1/processx/R/connections.R | 63 ++++++++++++++++++-- processx-3.2.1/processx/R/initialize.R | 1 processx-3.2.1/processx/R/io.R | 6 - processx-3.2.1/processx/R/named_pipe.R | 1 processx-3.2.1/processx/R/on-load.R | 10 ++- processx-3.2.1/processx/R/process.R | 8 +- processx-3.2.1/processx/R/run.R | 12 +-- processx-3.2.1/processx/R/utils.R | 6 + processx-3.2.1/processx/README.md |only processx-3.2.1/processx/man/base64_decode.Rd |only processx-3.2.1/processx/man/process.Rd | 2 processx-3.2.1/processx/man/process_initialize.Rd | 3 processx-3.2.1/processx/man/processx_connections.Rd | 30 ++++++++- processx-3.2.1/processx/src/Makevars | 2 processx-3.2.1/processx/src/Makevars.win | 4 - processx-3.2.1/processx/src/base64.c |only processx-3.2.1/processx/src/create-time.c | 11 ++- processx-3.2.1/processx/src/init.c | 2 processx-3.2.1/processx/src/processx.h | 3 processx-3.2.1/processx/tests/testthat/test-utils.R | 15 ++++ 29 files changed, 182 insertions(+), 73 deletions(-)
Title: Fast Specialized CSV File Loader
Description: Functions for loading large (10M+ lines) CSV
and other delimited files, similar to read.csv, but typically faster and
using less memory than the standard R loader. While not entirely general,
it covers many common use cases when the types of columns in the CSV file
are known in advance. In addition, the package provides a class 'int64',
which represents 64-bit integers exactly when reading from a file. The
latter is useful when working with 64-bit integer identifiers exported from
databases. The CSV file loader supports common column types including
'integer', 'double', 'string', and 'int64', leaving further type
transformations to the user.
Author: Sergei Izrailev
Maintainer: Sergei Izrailev <sizrailev@jabiruventures.com>
Diff between csvread versions 1.2 dated 2015-03-08 and 1.2.1 dated 2018-12-05
DESCRIPTION | 9 +- MD5 | 29 ++++----- NAMESPACE | 6 + NEWS | 7 +- R/csvread-package.R | 31 +++++----- R/csvread.R | 160 ++++++++++++++++++++++++++-------------------------- R/longint.R | 44 +++++++------- README.md | 2 inst/COPYRIGHTS | 4 - man/Ops.int64.Rd | 9 +- man/csvread.Rd | 22 ++----- man/int64.Rd | 29 ++++----- src/CMLineStream.h | 4 - src/csvread.cpp | 2 src/init.c |only src/int64.h | 2 16 files changed, 185 insertions(+), 175 deletions(-)
Title: Visualizing Association Rules and Frequent Itemsets
Description: Extends package 'arules' with various visualization techniques for association rules and itemsets. The package also includes several interactive visualizations for rule exploration.
Author: Michael Hahsler [aut, cre, cph],
Giallanza Tyler [ctb],
Sudheer Chelluboina [ctb]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between arulesViz versions 1.3-1 dated 2018-04-24 and 1.3-2 dated 2018-12-05
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 10 ++++++++-- R/matrix.R | 3 ++- R/plotly.R | 4 +--- R/shiny.R | 19 +++++++++---------- build/vignette.rds |binary inst/doc/arulesViz.pdf |binary man/plot.Rd | 15 +++++++++++++-- man/shiny.Rd | 8 ++++++-- 10 files changed, 52 insertions(+), 33 deletions(-)
Title: Search CRAN R Packages
Description: Search CRAN R packages. Uses the 'METACRAN' search server,
see <https://r-pkg.org>.
Author: Gábor Csárdi [aut, cre]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between pkgsearch versions 2.0.0 dated 2018-11-16 and 2.0.1 dated 2018-12-05
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 5 +++++ R/api.R | 2 +- 4 files changed, 12 insertions(+), 7 deletions(-)
Title: Bootstrap Resampling for Mixed Effects and Plain Models
Description: Performs bootstrap resampling for most models that update() works for. There
are two main functions: BootGlmm() performs block resampling if random effects
are present, and case resampling if not; BootCI() converts output from
bootstrap model runs into confidence intervals and p-values. By default,
BootGlmm() calls BootCI().
Package motivated by Humphrey and Swingley (2018) <arXiv:1805.08670>.
Author: Colman Humphrey [aut, cre]
Maintainer: Colman Humphrey <humphrc@tcd.ie>
Diff between glmmboot versions 0.2.0 dated 2018-09-10 and 0.3.0 dated 2018-12-05
DESCRIPTION | 8 MD5 | 44 - NEWS.md | 4 R/BootGlmm.R | 19 R/bootstrap_methods.R | 17 inst/doc/quick_use.html | 426 ++-------- man/BootGlmm.Rd | 12 man/GenSample.Rd | 2 vignettes/quick_use_cache/html/unnamed-chunk-10_92820b648a3ce75929e1d7124ef99da5.RData |binary vignettes/quick_use_cache/html/unnamed-chunk-2_0e9fb2184a004c706571d8f393cfeb2a.rdb |binary vignettes/quick_use_cache/html/unnamed-chunk-2_0e9fb2184a004c706571d8f393cfeb2a.rdx |binary vignettes/quick_use_cache/html/unnamed-chunk-3_1f4811905561271dbb8b0303817f5d83.rdb |binary vignettes/quick_use_cache/html/unnamed-chunk-3_1f4811905561271dbb8b0303817f5d83.rdx |binary vignettes/quick_use_cache/html/unnamed-chunk-4_d7eb272c64ed079abf5147c44f8aac2e.RData |binary vignettes/quick_use_cache/html/unnamed-chunk-5_81b761b902d58f42beb055372f2f5f67.RData |binary vignettes/quick_use_cache/html/unnamed-chunk-5_81b761b902d58f42beb055372f2f5f67.rdb |binary vignettes/quick_use_cache/html/unnamed-chunk-5_81b761b902d58f42beb055372f2f5f67.rdx |binary vignettes/quick_use_cache/html/unnamed-chunk-6_f12ccd0aec27d7b05216010f556fcb2f.RData |binary vignettes/quick_use_cache/html/unnamed-chunk-7_20e851cd905f2f0db583439f042efd42.RData |binary vignettes/quick_use_cache/html/unnamed-chunk-7_20e851cd905f2f0db583439f042efd42.rdb |binary vignettes/quick_use_cache/html/unnamed-chunk-7_20e851cd905f2f0db583439f042efd42.rdx |binary vignettes/quick_use_cache/html/unnamed-chunk-8_e501dcb13d1d321192b9eb891019adae.RData |binary vignettes/quick_use_cache/html/unnamed-chunk-9_759bdb725e839416860344dc1f200bf3.RData |binary 23 files changed, 177 insertions(+), 355 deletions(-)
Title: Use R for Fun
Description: This is a collection of R games and other funny stuff, such as the
classic Mine sweeper and sliding puzzles.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Yixuan Qiu [aut],
Taiyun Wei [aut]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between fun versions 0.1-0 dated 2011-08-12 and 0.2 dated 2018-12-05
fun-0.1-0/fun/README |only fun-0.2/fun/DESCRIPTION | 29 +- fun-0.2/fun/MD5 | 57 ++-- fun-0.2/fun/NAMESPACE | 5 fun-0.2/fun/NEWS | 44 ++- fun-0.2/fun/R/alzheimer_test.R | 195 ++++++++-------- fun-0.2/fun/R/fun-package.R | 78 +++--- fun-0.2/fun/R/gomoku.R | 86 +++---- fun-0.2/fun/R/htmlspecialchars.R | 40 +-- fun-0.2/fun/R/lights_out.R | 166 +++++++------- fun-0.2/fun/R/mine_sweeper.R | 420 ++++++++++++++++++++---------------- fun-0.2/fun/R/package.R |only fun-0.2/fun/R/random_password.R | 54 +--- fun-0.2/fun/R/shutdown.R | 49 ++-- fun-0.2/fun/R/sliding_puzzle.R | 269 ++++++++++------------- fun-0.2/fun/R/tag_cloud.R | 220 +++++++++--------- fun-0.2/fun/R/tower_of_hanoi.R | 106 ++++----- fun-0.2/fun/README.md |only fun-0.2/fun/inst/img/flag.png |binary fun-0.2/fun/man/alzheimer_test.Rd | 42 +-- fun-0.2/fun/man/fun-package.Rd | 23 - fun-0.2/fun/man/gomoku.Rd | 29 +- fun-0.2/fun/man/htmlspecialchars.Rd | 26 +- fun-0.2/fun/man/lights_out.Rd | 61 ++--- fun-0.2/fun/man/mine_sweeper.Rd | 51 +--- fun-0.2/fun/man/random_password.Rd | 33 +- fun-0.2/fun/man/shutdown.Rd | 41 +-- fun-0.2/fun/man/sliding_puzzle.Rd | 52 +--- fun-0.2/fun/man/tagData.Rd | 32 +- fun-0.2/fun/man/tag_cloud.Rd | 104 ++++---- fun-0.2/fun/man/tower_of_hanoi.Rd | 29 +- 31 files changed, 1160 insertions(+), 1181 deletions(-)
Title: Using the Theory of Belief Functions
Description: Using the Theory of Belief Functions for evidence calculus. Basic probability assignments, or mass functions, can be defined on the subsets of a set of possible values and combined. A mass function can be extended to a larger frame. Marginalization, i.e. reduction to a smaller frame can also be done. These features can be combined to analyze small belief networks and take into account situations where information cannot be satisfactorily described by probability distributions.
Author: Claude Boivin, Stat.ASSQ <webapp.cb@gmail.com>
Maintainer: Claude Boivin <webapp.cb@gmail.com>
Diff between dst versions 1.0.0 dated 2018-04-25 and 1.3.0 dated 2018-12-05
dst-1.0.0/dst/tests/testthat/test_inters_error.R |only dst-1.3.0/dst/DESCRIPTION | 20 ++- dst-1.3.0/dst/MD5 | 107 ++++++++++----------- dst-1.3.0/dst/NAMESPACE | 2 dst-1.3.0/dst/NEWS | 30 +++++ dst-1.3.0/dst/R/addTobca.R | 2 dst-1.3.0/dst/R/bca.R | 4 dst-1.3.0/dst/R/belplau.R | 15 ++ dst-1.3.0/dst/R/decode.R | 2 dst-1.3.0/dst/R/dsrwon.R | 13 +- dst-1.3.0/dst/R/elim.R | 32 +++--- dst-1.3.0/dst/R/encode.R | 2 dst-1.3.0/dst/R/extmin.R | 66 ++++++------ dst-1.3.0/dst/R/marrayToMatrix.R |only dst-1.3.0/dst/R/matrixToMarray.R |only dst-1.3.0/dst/R/nameRows.R | 6 - dst-1.3.0/dst/R/nzdsr.R | 4 dst-1.3.0/dst/R/plautrans.R | 2 dst-1.3.0/dst/R/reduction.R | 7 - dst-1.3.0/dst/R/shape.R | 3 dst-1.3.0/dst/R/tabresul.R | 9 + dst-1.3.0/dst/inst/doc/Monty-hall-Example.html | 10 - dst-1.3.0/dst/inst/dst.pdf |binary dst-1.3.0/dst/man/addTobca.Rd | 2 dst-1.3.0/dst/man/bca.Rd | 7 - dst-1.3.0/dst/man/belplau.Rd | 6 - dst-1.3.0/dst/man/decode.Rd | 2 dst-1.3.0/dst/man/dsrwon.Rd | 6 - dst-1.3.0/dst/man/elim.Rd | 4 dst-1.3.0/dst/man/encode.Rd | 2 dst-1.3.0/dst/man/extmin.Rd | 16 +-- dst-1.3.0/dst/man/marrayToMatrix.Rd |only dst-1.3.0/dst/man/matrixToMarray.Rd |only dst-1.3.0/dst/man/nameRows.Rd | 4 dst-1.3.0/dst/man/nzdsr.Rd | 4 dst-1.3.0/dst/man/plautrans.Rd | 2 dst-1.3.0/dst/man/reduction.Rd | 7 - dst-1.3.0/dst/man/shape.Rd | 3 dst-1.3.0/dst/tests/testthat/test_addTobca.R | 2 dst-1.3.0/dst/tests/testthat/test_bca.R | 2 dst-1.3.0/dst/tests/testthat/test_belplau.R | 9 + dst-1.3.0/dst/tests/testthat/test_decode.R | 2 dst-1.3.0/dst/tests/testthat/test_dotprod.R | 2 dst-1.3.0/dst/tests/testthat/test_doubles.R | 2 dst-1.3.0/dst/tests/testthat/test_dsrwon.R | 2 dst-1.3.0/dst/tests/testthat/test_elim.R | 2 dst-1.3.0/dst/tests/testthat/test_encode.R | 2 dst-1.3.0/dst/tests/testthat/test_extmin.R | 2 dst-1.3.0/dst/tests/testthat/test_inters.R | 9 + dst-1.3.0/dst/tests/testthat/test_marrayToMatrix.R |only dst-1.3.0/dst/tests/testthat/test_matrixToMarray.R |only dst-1.3.0/dst/tests/testthat/test_nameRows.R | 2 dst-1.3.0/dst/tests/testthat/test_nzdsr.R | 2 dst-1.3.0/dst/tests/testthat/test_plautrans.R | 2 dst-1.3.0/dst/tests/testthat/test_productSpace.R | 2 dst-1.3.0/dst/tests/testthat/test_reduction.R | 2 dst-1.3.0/dst/tests/testthat/test_shape.R | 2 dst-1.3.0/dst/tests/testthat/test_tabresul.R | 8 + 58 files changed, 288 insertions(+), 169 deletions(-)
Title: Data Analysis of Liquid-Liquid Systems
Description: Analyses experimental data from liquid-liquid phase diagrams and
provide a simple way to obtain its parameters, producing a simplified report. Designed
initially to analyse Aqueous Two-Phases Systems, the package will include (every
other update) new functions in order to comprise useful tools in liquid-liquid
analysis.
Author: Diego F Coelho <diegofcoelho@gmail.com>
Maintainer: Diego F Coelho <diegofcoelho@gmail.com>
Diff between LLSR versions 0.0.2.3 dated 2018-11-26 and 0.0.2.4 dated 2018-12-05
LLSR-0.0.2.3/LLSR/R/AQSearch.CAS.R |only LLSR-0.0.2.3/LLSR/man/AQSearch.CAS.Rd |only LLSR-0.0.2.4/LLSR/DESCRIPTION | 11 +- LLSR-0.0.2.4/LLSR/MD5 | 49 ++++----- LLSR-0.0.2.4/LLSR/NAMESPACE | 3 LLSR-0.0.2.4/LLSR/R/AQSearch.R | 111 +++++++++++---------- LLSR-0.0.2.4/LLSR/R/AQSearchUtils.R | 4 LLSR-0.0.2.4/LLSR/R/AQSys.R | 24 ++++ LLSR-0.0.2.4/LLSR/R/AQSys.err.R | 11 +- LLSR-0.0.2.4/LLSR/R/AQSys.gsnchk.R | 16 ++- LLSR-0.0.2.4/LLSR/R/AQSys.mathDesc.R | 66 ++++++++++-- LLSR-0.0.2.4/LLSR/R/AQSys.mrchk.R | 33 +++--- LLSR-0.0.2.4/LLSR/R/AQSys.mrgsn.R | 29 ++--- LLSR-0.0.2.4/LLSR/R/AQSysDB.R | 2 LLSR-0.0.2.4/LLSR/R/AQSysEval.R | 17 --- LLSR-0.0.2.4/LLSR/R/AQSysFormulas.R | 167 +++++++++++++++++++++++--------- LLSR-0.0.2.4/LLSR/R/datasets.R | 5 LLSR-0.0.2.4/LLSR/data/llsr_data.rda |binary LLSR-0.0.2.4/LLSR/man/AQSearch.Rd | 27 ++--- LLSR-0.0.2.4/LLSR/man/AQSys.Rd | 19 +++ LLSR-0.0.2.4/LLSR/man/AQSys.gsnchk.Rd | 15 ++ LLSR-0.0.2.4/LLSR/man/AQSys.tielines.Rd | 8 + LLSR-0.0.2.4/LLSR/man/AQSysBancroft.Rd | 8 - LLSR-0.0.2.4/LLSR/man/AQSysEval.Rd | 5 LLSR-0.0.2.4/LLSR/man/AQSysList.Rd |only LLSR-0.0.2.4/LLSR/man/AQSysOthmer.Rd | 4 LLSR-0.0.2.4/LLSR/man/llsr_data.Rd | 8 - 27 files changed, 412 insertions(+), 230 deletions(-)
Title: Statistics and Metrics for Seismic Data
Description: Classes and functions for metrics calculation as part of the
'IRIS DMC MUSTANG' project. The functionality in this package
builds upon the base classes of the 'IRISSeismic' package.
Metrics include basic statistics as well as higher level
'health' metrics that can help identify problematic seismometers.
Author: Jonathan Callahan [aut],
Rob Casey [aut],
Mary Templeton [aut],
Gillian Sharer [aut, cre]
Maintainer: Gillian Sharer <gillian@iris.washington.edu>
Diff between IRISMustangMetrics versions 2.1.2 dated 2018-10-17 and 2.1.3 dated 2018-12-05
DESCRIPTION | 6 - MD5 | 14 +- R/BSSUtils.R | 182 ++++++++++++++++++++------------------ R/ISPAQUtils.R | 3 man/IRISMustangMetrics-package.Rd | 6 + man/createBssUrl.Rd | 13 +- man/getGeneralValueMetrics.Rd | 27 +---- man/getMustangMetrics.Rd | 13 +- 8 files changed, 134 insertions(+), 130 deletions(-)
More information about IRISMustangMetrics at CRAN
Permanent link
Title: Estimation and Testing of Average Hazard Ratios
Description: Methods for estimation of multivariate average hazard ratios as
defined by Kalbfleisch and Prentice. The underlying survival functions of the
event of interest in each group can be estimated using either the (weighted)
Kaplan-Meier estimator or the Aalen-Johansen estimator for the transition
probabilities in Markov multi-state models. Right-censored and left-truncated
data is supported. Moreover, the difference in restricted mean survival can be
estimated.
Author: Matthias Brueckner [aut, cre]
Maintainer: Matthias Brueckner <matthias.brueckner@posteo.de>
Diff between AHR versions 1.4.2 dated 2016-08-28 and 1.5.0 dated 2018-12-05
AHR-1.4.2/AHR/src/Makevars |only AHR-1.4.2/AHR/src/Makevars.win |only AHR-1.5.0/AHR/DESCRIPTION | 15 ++++---- AHR-1.5.0/AHR/LICENSE |only AHR-1.5.0/AHR/MD5 | 51 +++++++++++++++-------------- AHR-1.5.0/AHR/NAMESPACE | 1 AHR-1.5.0/AHR/R/AHR-package.R | 2 - AHR-1.5.0/AHR/R/ahr.R | 53 +++++++++++++++++++++++++++++++ AHR-1.5.0/AHR/R/aj.R | 2 - AHR-1.5.0/AHR/README.md | 5 +- AHR-1.5.0/AHR/man/AHR.Rd | 7 +--- AHR-1.5.0/AHR/man/ahrAJ.Rd | 1 AHR-1.5.0/AHR/man/ahrKM.Rd | 4 +- AHR-1.5.0/AHR/man/ahrUser.Rd |only AHR-1.5.0/AHR/man/ahrWKM.Rd | 1 AHR-1.5.0/AHR/man/aj.Rd | 1 AHR-1.5.0/AHR/man/avgHR.Rd | 1 AHR-1.5.0/AHR/man/fastkm.Rd | 5 +- AHR-1.5.0/AHR/man/print.ahr.Rd | 1 AHR-1.5.0/AHR/man/print.rmd.Rd | 1 AHR-1.5.0/AHR/man/print.survQuantile.Rd | 1 AHR-1.5.0/AHR/man/rmeanDiff.Rd | 1 AHR-1.5.0/AHR/man/rmeanDiff.ahr.Rd | 1 AHR-1.5.0/AHR/man/wkm.Rd | 5 +- AHR-1.5.0/AHR/man/wkmCompareQuantiles.Rd | 5 +- AHR-1.5.0/AHR/man/wkmQuantile.Rd | 1 AHR-1.5.0/AHR/src/AHR_init.c |only AHR-1.5.0/AHR/tests/testthat.R | 33 +++++++++++++++++++ AHR-1.5.0/AHR/tests/testthat/test-aj.R | 24 +++++++++++++- 29 files changed, 160 insertions(+), 62 deletions(-)