Sat, 08 Dec 2018

Package rPraat updated to version 1.2.0 with previous version 1.1.2 dated 2018-08-04

Title: Interface to Praat
Description: Read, write and manipulate 'Praat' TextGrid, PitchTier, Pitch, IntensityTier, Formant, and Collection files <http://www.fon.hum.uva.nl/praat/>.
Author: Tomas Boril [aut, cre]
Maintainer: Tomas Boril <borilt@gmail.com>

Diff between rPraat versions 1.1.2 dated 2018-08-04 and 1.2.0 dated 2018-12-08

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New package R2STATS with initial version 0.68-39
Package: R2STATS
Title: A GTK GUI for Fitting and Comparing GLM and GLMM
Version: 0.68-39
Encoding: UTF-8
Date: 2018-11-30
Author: Yvonnick Noel [aut, cre]
Maintainer: Yvonnick Noel <yvonnick.noel@univ-rennes2.fr>
Description: A 'gWidgetsRGtk2' GUI for fitting and comparing GLM or GLMM (based on Douglas Bates' 'lme4' package). It is designed to make comparisons between numerous models easy, both numerically and graphically, which may be useful for teaching. Relevant plots are automatically produced for each model family. 'R2STATS' is *not* a generic graphical interface for R, but a GUI for statistical modelling in a model comparison approach.
URL: http://yvonnick.noel.free.fr/r2stats
License: GPL (>= 2)
Depends: R (>= 3.1.0), proto, Matrix
Imports: grDevices, lattice, lme4, cairoDevice, gWidgets, gWidgetsRGtk2, RGtk2Extras, MASS, utils, latticeExtra, statmod
SystemRequirements: Cairo (>= 1.0.0), ATK (>= 1.10.0), Pango (>=1.10.0), GTK+ (>= 2.8.0), GLib (>= 2.8.0)
NeedsCompilation: no
Packaged: 2018-12-08 08:34:12 UTC; noel
Repository: CRAN
Date/Publication: 2018-12-08 23:22:34 UTC

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Package depmix updated to version 0.9.15 with previous version 0.9.14 dated 2016-02-22

Title: Dependent Mixture Models
Description: Fits (multigroup) mixtures of latent or hidden Markov models on mixed categorical and continuous (timeseries) data. The Rdonlp2 package can optionally be used for optimization of the log-likelihood and is available from R-forge.
Author: Ingmar Visser <i.visser@uva.nl>
Maintainer: Ingmar Visser <i.visser@uva.nl>

Diff between depmix versions 0.9.14 dated 2016-02-22 and 0.9.15 dated 2018-12-08

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Package CholWishart updated to version 0.9.3 with previous version 0.9.2 dated 2018-03-21

Title: Cholesky Decomposition of the Wishart Distribution
Description: Sampling from the Cholesky factorization of a Wishart random variable, sampling from the inverse Wishart distribution, sampling from the Cholesky factorization of an inverse Wishart random variable, computing densities for the Wishart and inverse Wishart distributions, and computing the multivariate gamma and digamma functions.
Author: Geoffrey Thompson [aut, cre], R Core Team [ctb]
Maintainer: Geoffrey Thompson <gzthompson@gmail.com>

Diff between CholWishart versions 0.9.2 dated 2018-03-21 and 0.9.3 dated 2018-12-08

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Package automl updated to version 1.2.6 with previous version 1.2.0 dated 2018-11-23

Title: Deep Learning with Metaheuristic
Description: Fits from simple regression to highly customizable deep neural networks either with gradient descent or metaheuristic, using automatic hyper parameters tuning and custom cost function. A mix inspired by the common tricks on Deep Learning and Particle Swarm Optimization.
Author: Alex Boulangé [aut, cre]
Maintainer: Alex Boulangé <aboul@free.fr>

Diff between automl versions 1.2.0 dated 2018-11-23 and 1.2.6 dated 2018-12-08

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Package mudata2 updated to version 1.0.4 with previous version 1.0.2.1 dated 2018-08-19

Title: Interchange Tools for Multi-Parameter Spatiotemporal Data
Description: Formatting and structuring multi-parameter spatiotemporal data is often a time-consuming task. This package offers functions and data structures designed to easily organize and visualize these data for applications in geology, paleolimnology, dendrochronology, and paleoclimate. See Dunnington and Spooner (2018) <doi:10.1139/facets-2017-0026>.
Author: Dewey Dunnington [aut, cre]
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>

Diff between mudata2 versions 1.0.2.1 dated 2018-08-19 and 1.0.4 dated 2018-12-08

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Package IsoplotR updated to version 2.3 with previous version 2.2 dated 2018-11-09

Title: Statistical Toolbox for Radiometric Geochronology
Description: Plots U-Pb data on Wetherill and Tera-Wasserburg concordia diagrams. Calculates concordia and discordia ages. Performs linear regression of measurements with correlated errors using 'York', 'Titterington' and 'Ludwig' approaches. Generates Kernel Density Estimates (KDEs) and Cumulative Age Distributions (CADs). Produces Multidimensional Scaling (MDS) configurations and Shepard plots of multi-sample detrital datasets using the Kolmogorov-Smirnov distance as a dissimilarity measure. Calculates 40Ar/39Ar ages, isochrons, and age spectra. Computes weighted means accounting for overdispersion. Calculates U-Th-He (single grain and central) ages, logratio plots and ternary diagrams. Processes fission track data using the external detector method and LA-ICP-MS, calculates central ages and plots fission track and other data on radial (a.k.a. 'Galbraith') plots. Constructs total Pb-U, Pb-Pb, K-Ca, Re-Os, Sm-Nd, Lu-Hf, Rb-Sr and 230Th-U isochrons as well as 230Th-U evolution plots.
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>

Diff between IsoplotR versions 2.2 dated 2018-11-09 and 2.3 dated 2018-12-08

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Package OSDR updated to version 1.1.2 with previous version 1.1 dated 2018-10-08

Title: Finds an Optimal System of Distinct Representatives
Description: Provides routines for finding an Optimal System of Distinct Representatives (OSDR), as defined by D.Gale (1968) <doi:10.1016/S0021-9800(68)80039-0>.
Author: Massimo Cannas [aut, cre]
Maintainer: Massimo Cannas <massimo.cannas@unica.it>

Diff between OSDR versions 1.1 dated 2018-10-08 and 1.1.2 dated 2018-12-08

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Package totalcensus updated to version 0.5.1 with previous version 0.5.0 dated 2018-10-25

Title: Extract Decennial Census and American Community Survey Data
Description: Download summary files from Census Bureau <https://www2.census.gov/> and extract data, in particular high resolution data at block, block group, and tract level, from decennial census and American Community Survey 1-year and 5-year estimates.
Author: Guanglai Li
Maintainer: Guanglai Li <liguanglai@gmail.com>

Diff between totalcensus versions 0.5.0 dated 2018-10-25 and 0.5.1 dated 2018-12-08

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Package palm updated to version 1.1.3 with previous version 1.1.2 dated 2018-11-14

Title: Fitting Point Process Models via the Palm Likelihood
Description: Functions to fit point process models using the Palm likelihood. First proposed by Tanaka, Ogata, and Stoyan (2008) <DOI:10.1002/bimj.200610339>, maximisation of the Palm likelihood can provide computationally efficient parameter estimation for point process models in situations where the full likelihood is intractable. This package is chiefly focused on Neyman-Scott point processes, but can also fit the void processes proposed by Jones-Todd et al. (in press) <DOI:10.1002/sim.8046>. The development of this package was motivated by the analysis of capture-recapture surveys on which individuals cannot be identified---the data from which can conceptually be seen as a clustered point process (Stevenson, Borchers, and Fewster, in press <DOI:10.1111/biom.12983>). As such, some of the functions in this package are specifically for the estimation of cetacean density from two-camera aerial surveys.
Author: Ben Stevenson <ben.stevenson@auckland.ac.nz>
Maintainer: Ben Stevenson <ben.stevenson@auckland.ac.nz>

Diff between palm versions 1.1.2 dated 2018-11-14 and 1.1.3 dated 2018-12-08

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Package Rdrools updated to version 1.1.1 with previous version 1.1.0 dated 2018-07-11

Title: A Rules Engine Based on 'Drools'
Description: An interface for using the popular Java based Drools, which is a Business Rule Management System (See <https://www.drools.org> for more information). This package provides data scientists an intuitive interface to execute business rules on datasets for the purpose of analysis or designing intelligent systems, while leveraging the Drools rule engine. Rules written in DRL format accepted natively by Drools can also be executed through an R interface. Credits to Mu Sigma for their continued support throughout the development of the package.
Author: Ashwin Raaghav [aut], SMS Chauhan [aut], Naren Srinivasan [aut], Dheekshitha PS [aut], Zubin Dowlaty [aut], Mayukh Bose [aut], Arushi Khattri [aut], Mu Sigma, Inc. [cre]
Maintainer: "Mu Sigma, Inc." <ird.experiencelab@mu-sigma.com>

Diff between Rdrools versions 1.1.0 dated 2018-07-11 and 1.1.1 dated 2018-12-08

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Package pbdBASE updated to version 0.5-0 with previous version 0.4-5.2 dated 2018-11-24

Title: Programming with Big Data -- Base Wrappers for Distributed Matrices
Description: An interface to and extensions for the 'PBLAS' and 'ScaLAPACK' numerical libraries. This enables R to utilize distributed linear algebra for codes written in the 'SPMD' fashion. This interface is deliberately low-level and mimics the style of the native libraries it wraps. For a much higher level way of managing distributed matrices, see the 'pbdDMAT' package.
Author: Drew Schmidt [aut, cre], Wei-Chen Chen [aut], Sebastien Lamy de la Chapelle [aut], George Ostrouchov [aut], Pragneshkumar Patel [aut], Ewan Higgs [ctb]
Maintainer: Drew Schmidt <wrathematics@gmail.com>

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Package dynamac updated to version 0.1.5 with previous version 0.1.4 dated 2018-05-09

Title: Dynamic Simulation and Testing for Single-Equation ARDL Models
Description: While autoregressive distributed lag (ARDL) models allow for extremely flexible dynamics, interpreting substantive significance of complex lag structures remains difficult. This package is designed to assist users in dynamically simulating and plotting the results of various ARDL models. It also contains post-estimation diagnostics, including a test for cointegration when estimating the error-correction variant of the autoregressive distributed lag model (Pesaran, Shin, and Smith 2001 <doi:10.1002/jae.616>).
Author: Soren Jordan [aut, cre, cph], Andrew Q. Philips [aut]
Maintainer: Soren Jordan <sorenjordanpols@gmail.com>

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Package rtk updated to version 0.2.5.7 with previous version 0.2.5.4 dated 2018-02-11

Title: Rarefaction Tool Kit
Description: Rarefy data, calculate diversity and plot the results.
Author: Paul Saary, Falk Hildebrand
Maintainer: Paul Saary <rtk@paulsaary.de>

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Package openCR updated to version 1.3.1 with previous version 1.3.0 dated 2018-11-26

Title: Open Population Capture-Recapture
Description: Functions for non-spatial and spatial open-population capture-recapture analysis.
Author: Murray Efford [aut, cre] (<https://orcid.org/0000-0001-5231-5184>)
Maintainer: Murray Efford <murray.efford@otago.ac.nz>

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Package mdsOpt updated to version 0.3-3 with previous version 0.3-2 dated 2018-10-03

Title: Searching for Optimal MDS Procedure for Metric and Interval-Valued Data
Description: Selecting the optimal multidimensional scaling (MDS) procedure for metric data via metric MDS (ratio, interval, mspline) and nonmetric MDS (ordinal). Selecting the optimal multidimensional scaling (MDS) procedure for interval-valued data via metric MDS (ratio, interval, mspline).Selecting the optimal multidimensional scaling procedure for interval-valued data by varying all combinations of normalization and optimization methods.Selecting the optimal MDS procedure for statistical data referring to the evaluation of tourist attractiveness of Lower Silesian counties. (Borg, I., Groenen, P.J.F., Mair, P. (2013) <doi:10.1007/978-3-642-31848-1>, Groenen, P.J.F., Winsberg, S., Rodriguez, O., Diday, E. (2006) <doi:10.1016/j.csda.2006.04.003>, Walesiak, M. (2016) <doi:10.15611/ekt.2016.2.01>, Walesiak, M. (2017) <doi:10.15611/ekt.2017.3.01>).
Author: Marek Walesiak <marek.walesiak@ue.wroc.pl>, Andrzej Dudek <andrzej.dudek@ue.wroc.pl>
Maintainer: Andrzej Dudek <andrzej.dudek@ue.wroc.pl>

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Package ggstatsplot updated to version 0.0.7 with previous version 0.0.6 dated 2018-09-30

Title: 'ggplot2' Based Plots with Statistical Details
Description: Extension of 'ggplot2', 'ggstatsplot' creates graphics with details from statistical tests included in the plots themselves. It is targeted primarily at behavioral sciences community to provide a one-line code to generate information-rich plots for statistical analysis. of continuous (violin plots, scatterplots, histograms) or categorical (pie charts) data. Currently, it supports only the most common types of statistical tests: parametric, nonparametric, robust, and bayesian versions of t-test/anova, correlation analyses, contingency table analysis, and regression analyses.
Author: Indrajeet Patil [aut, cre] (<https://orcid.org/0000-0003-1995-6531>), Chuck Powell [ctb] (<https://orcid.org/0000-0002-3606-2188>)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>

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Package exams updated to version 2.3-2 with previous version 2.3-1 dated 2018-05-11

Title: Automatic Generation of Exams in R
Description: Automatic generation of exams based on exercises in Markdown or LaTeX format, possibly including R code for dynamic generation of exercise elements. Exercise types include single-choice and multiple-choice questions, arithmetic problems, string questions, and combinations thereof (cloze). Output formats include standalone files (PDF, HTML, Docx, ODT, ...), Moodle XML, QTI 1.2 (for OLAT/OpenOLAT), QTI 2.1, Blackboard, ARSnova, and TCExam. In addition to fully customizable PDF exams, a standardized PDF format (NOPS) is provided that can be printed, scanned, and automatically evaluated.
Author: Achim Zeileis [aut, cre] (<https://orcid.org/0000-0003-0918-3766>), Bettina Gruen [aut] (<https://orcid.org/0000-0001-7265-4773>), Friedrich Leisch [aut] (<https://orcid.org/0000-0001-7278-1983>), Nikolaus Umlauf [aut], Mirko Birbaumer [ctb], Dominik Ernst [ctb], Patrik Keller [ctb], Niels Smits [ctb], Reto Stauffer [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>

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Package cNORM updated to version 1.1.2 with previous version 1.0.1 dated 2018-11-14

Title: Continuous Norming
Description: Conventional methods for producing standard scores in psychometrics or biometrics are often plagued with "jumps" or "gaps" (i.e., discontinuities) in norm tables and low confidence for assessing extreme scores. The continuous norming method introduced by A. Lenhard et al. (2016), <doi:10.1177/1073191116656437>, generates continuous test norm scores on the basis of the raw data from standardization samples, without requiring assumptions about the distribution of the raw data: Norm scores are directly established from raw data by modeling the latter ones as a function of both percentile scores and an explanatory variable (e.g., age). The method minimizes bias arising from sampling and measurement error, while handling marked deviations from normality, addressing bottom or ceiling effects and capturing almost all of the variance in the original norm data sample.
Author: Wolfgang Lenhard [cre, aut] (<https://orcid.org/0000-0002-8184-6889>), Alexandra Lenhard [aut], Sebastian Gary [ctb]
Maintainer: Wolfgang Lenhard <wolfgang.lenhard@uni-wuerzburg.de>

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Package rscala updated to version 3.2.5 with previous version 3.2.4 dated 2018-11-05

Title: Bridge Between 'R' and 'Scala' with Callbacks
Description: 'Scala' <http://www.scala-lang.org/> is embedded in 'R' and callbacks from 'Scala' to 'R' are available. Support is provided to write 'R' packages that access 'Scala'. After installation, please run 'rscala::scalaConfig()'.
Author: David B. Dahl [aut, cre]
Maintainer: David B. Dahl <dahl@stat.byu.edu>

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Package rmarkdown updated to version 1.11 with previous version 1.10 dated 2018-06-11

Title: Dynamic Documents for R
Description: Convert R Markdown documents into a variety of formats.
Author: JJ Allaire [aut], Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>), Jonathan McPherson [aut], Javier Luraschi [aut], Kevin Ushey [aut], Aron Atkins [aut], Hadley Wickham [aut], Joe Cheng [aut], Winston Chang [aut], Richard Iannone [aut] (<https://orcid.org/0000-0003-3925-190X>), Jeff Allen [ctb], Barret Schloerke [ctb], Roy Storey [ctb], Rob Hyndman [ctb], Ruben Arslan [ctb], Frederik Aust [ctb] (<https://orcid.org/0000-0003-4900-788X>), Christophe Dervieux [ctb], RStudio, Inc. [cph], jQuery Foundation [cph] (jQuery library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/rmd/h/jquery-AUTHORS.txt), jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in inst/rmd/h/jqueryui-AUTHORS.txt), Mark Otto [ctb] (Bootstrap library), Jacob Thornton [ctb] (Bootstrap library), Bootstrap contributors [ctb] (Bootstrap library), Twitter, Inc [cph] (Bootstrap library), Alexander Farkas [ctb, cph] (html5shiv library), Scott Jehl [ctb, cph] (Respond.js library), Ivan Sagalaev [ctb, cph] (highlight.js library), Greg Franko [ctb, cph] (tocify library), John MacFarlane [ctb, cph] (Pandoc templates), Google, Inc. [ctb, cph] (ioslides library), Dave Raggett [ctb] (slidy library), W3C [cph] (slidy library), Dave Gandy [ctb, cph] (Font-Awesome), Ben Sperry [ctb] (Ionicons), Drifty [cph] (Ionicons), Aidan Lister [ctb, cph] (jQuery StickyTabs)
Maintainer: Yihui Xie <xie@yihui.name>

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 96 files changed, 1728 insertions(+), 1082 deletions(-)

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