Title: Interface to Praat
Description: Read, write and manipulate 'Praat' TextGrid, PitchTier, Pitch, IntensityTier, Formant, and Collection files <http://www.fon.hum.uva.nl/praat/>.
Author: Tomas Boril [aut, cre]
Maintainer: Tomas Boril <borilt@gmail.com>
Diff between rPraat versions 1.1.2 dated 2018-08-04 and 1.2.0 dated 2018-12-08
DESCRIPTION | 16 MD5 | 202 - NAMESPACE | 28 NEWS.md |only R/col.R |only R/formant.R |only R/it.R |only R/pitch.R |only R/pt.R |only R/rpraat.R | 4782 ------------------------------ R/rpraat_sampleData.R | 4779 ++++++++++++++++++++++++++++- R/snd.R |only R/tg.R |only README.md |only man/as.formant.Rd |only man/as.it.Rd |only man/as.pitch.Rd |only man/as.pt.Rd |only man/as.snd.Rd |only man/as.tg.Rd |only man/col.read.Rd | 8 man/col.write.Rd |only man/formant.cut.Rd |only man/formant.cut0.Rd |only man/formant.plot.Rd |only man/formant.read.Rd |only man/formant.sample.Rd |only man/formant.toArray.Rd |only man/formant.toFrame.Rd |only man/formant.write.Rd |only man/ifft.Rd | 2 man/isInt.Rd | 4 man/isLogical.Rd | 4 man/isNum.Rd | 4 man/isString.Rd | 4 man/it.cut.Rd | 6 man/it.cut0.Rd | 8 man/it.interpolate.Rd | 8 man/it.legendre.Rd | 4 man/it.legendreDemo.Rd | 2 man/it.legendreSynth.Rd | 4 man/it.plot.Rd | 8 man/it.read.Rd | 6 man/it.write.Rd | 10 man/pitch.cut.Rd |only man/pitch.cut0.Rd |only man/pitch.plot.Rd |only man/pitch.read.Rd | 32 man/pitch.sample.Rd |only man/pitch.toArray.Rd |only man/pitch.toFrame.Rd |only man/pitch.write.Rd |only man/pt.Hz2ST.Rd | 2 man/pt.cut.Rd | 6 man/pt.cut0.Rd | 8 man/pt.interpolate.Rd | 8 man/pt.legendre.Rd | 4 man/pt.legendreDemo.Rd | 2 man/pt.legendreSynth.Rd | 4 man/pt.plot.Rd | 6 man/pt.read.Rd | 6 man/pt.write.Rd | 12 man/seqM.Rd | 4 man/snd.cut.Rd |only man/snd.cut0.Rd |only man/snd.plot.Rd |only man/snd.read.Rd |only man/snd.sample.Rd |only man/snd.write.Rd |only man/strTrim.Rd | 2 man/str_contains.Rd | 4 man/str_find.Rd | 2 man/str_find1.Rd | 2 man/tg.checkTierInd.Rd | 2 man/tg.countLabels.Rd | 2 man/tg.createNewTextGrid.Rd | 6 man/tg.cut.Rd | 6 man/tg.cut0.Rd | 6 man/tg.duplicateTier.Rd | 8 man/tg.duplicateTierMergeSegments.Rd | 12 man/tg.findLabels.Rd | 6 man/tg.getEndTime.Rd | 2 man/tg.getIntervalDuration.Rd | 2 man/tg.getIntervalEndTime.Rd | 2 man/tg.getIntervalIndexAtTime.Rd | 4 man/tg.getIntervalStartTime.Rd | 2 man/tg.getLabel.Rd | 2 man/tg.getNumberOfIntervals.Rd | 2 man/tg.getNumberOfPoints.Rd | 2 man/tg.getNumberOfTiers.Rd | 2 man/tg.getPointIndexHigherThanTime.Rd | 4 man/tg.getPointIndexLowerThanTime.Rd | 4 man/tg.getPointIndexNearestTime.Rd | 4 man/tg.getPointTime.Rd | 2 man/tg.getStartTime.Rd | 2 man/tg.getTierName.Rd | 2 man/tg.getTotalDuration.Rd | 2 man/tg.insertBoundary.Rd | 6 man/tg.insertInterval.Rd | 50 man/tg.insertNewIntervalTier.Rd | 4 man/tg.insertNewPointTier.Rd | 4 man/tg.insertPoint.Rd | 2 man/tg.isIntervalTier.Rd | 6 man/tg.isPointTier.Rd | 6 man/tg.plot.Rd | 30 man/tg.read.Rd | 6 man/tg.removeIntervalBothBoundaries.Rd | 8 man/tg.removeIntervalLeftBoundary.Rd | 6 man/tg.removeIntervalRightBoundary.Rd | 6 man/tg.removePoint.Rd | 4 man/tg.removeTier.Rd | 2 man/tg.repairContinuity.Rd | 4 man/tg.setLabel.Rd | 2 man/tg.setTierName.Rd | 2 man/tg.write.Rd | 10 tests/testthat/H.wav |only tests/testthat/coll_short.Collection | 832 +++++ tests/testthat/coll_text.Collection | 1325 ++++++++ tests/testthat/coll_text_UTF16.Collection |only tests/testthat/maminka.Formant |only tests/testthat/maminka_UTF16.Formant |only tests/testthat/maminka_short.Formant |only tests/testthat/test_rpraat.R | 907 +++++ 123 files changed, 7974 insertions(+), 5329 deletions(-)
Title: Dependent Mixture Models
Description: Fits (multigroup) mixtures of latent or hidden Markov models on mixed categorical and continuous (timeseries) data. The Rdonlp2 package can optionally be used for optimization of the log-likelihood and is available from R-forge.
Author: Ingmar Visser <i.visser@uva.nl>
Maintainer: Ingmar Visser <i.visser@uva.nl>
Diff between depmix versions 0.9.14 dated 2016-02-22 and 0.9.15 dated 2018-12-08
depmix-0.9.14/depmix/src/npsolfit.h |only depmix-0.9.15/depmix/CHANGES | 5 + depmix-0.9.15/depmix/DESCRIPTION | 15 +-- depmix-0.9.15/depmix/MD5 | 22 ++-- depmix-0.9.15/depmix/NAMESPACE | 5 - depmix-0.9.15/depmix/R/depmix-internal.R | 2 depmix-0.9.15/depmix/R/depmix.R | 122 ++++++++++++------------- depmix-0.9.15/depmix/data/discrimination.rda |binary depmix-0.9.15/depmix/data/speed.rda |binary depmix-0.9.15/depmix/inst/CITATION | 4 depmix-0.9.15/depmix/inst/doc/depmix-intro.pdf |binary depmix-0.9.15/depmix/src/depmix_init.c |only depmix-0.9.15/depmix/src/logl.cc | 2 13 files changed, 88 insertions(+), 89 deletions(-)
Title: Cholesky Decomposition of the Wishart Distribution
Description: Sampling from the Cholesky factorization of a Wishart random
variable, sampling from the inverse Wishart distribution, sampling from
the Cholesky factorization of an inverse Wishart random variable,
computing densities for the Wishart and inverse Wishart distributions,
and computing the multivariate gamma and digamma functions.
Author: Geoffrey Thompson [aut, cre],
R Core Team [ctb]
Maintainer: Geoffrey Thompson <gzthompson@gmail.com>
Diff between CholWishart versions 0.9.2 dated 2018-03-21 and 0.9.3 dated 2018-12-08
DESCRIPTION | 9 MD5 | 26 NEWS.md | 4 R/wishart.R | 8 README.md | 87 ++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/wishart.R | 11 inst/doc/wishart.html | 410 +++++++--- tests/testthat/testinput.R | 70 - tests/testthat/testoutput.R | 3 vignettes/wishart_cache/html/chol_dffad80619129722ebe5e4b583cc4fdd.RData |binary vignettes/wishart_cache/html/chol_dffad80619129722ebe5e4b583cc4fdd.rdb |binary vignettes/wishart_cache/html/chol_dffad80619129722ebe5e4b583cc4fdd.rdx |binary 14 files changed, 474 insertions(+), 154 deletions(-)
Title: Deep Learning with Metaheuristic
Description: Fits from simple regression to highly customizable deep neural networks
either with gradient descent or metaheuristic, using automatic hyper parameters
tuning and custom cost function.
A mix inspired by the common tricks on Deep Learning and Particle Swarm Optimization.
Author: Alex Boulangé [aut, cre]
Maintainer: Alex Boulangé <aboul@free.fr>
Diff between automl versions 1.2.0 dated 2018-11-23 and 1.2.6 dated 2018-12-08
DESCRIPTION | 15 +++-- MD5 | 18 +++--- NEWS | 29 ++++++++++ R/automl.R | 122 +++++++++++++++++++++++++++++---------------- README.md |only inst/doc/howto_automl.Rnw | 29 ++++------ inst/doc/howto_automl.pdf |binary man/automl_predict.Rd | 2 man/autopar.Rd | 2 vignettes/automl.Rmd |only vignettes/howto_automl.Rnw | 29 ++++------ 11 files changed, 156 insertions(+), 90 deletions(-)
Title: Interchange Tools for Multi-Parameter Spatiotemporal Data
Description: Formatting and structuring multi-parameter spatiotemporal data
is often a time-consuming task. This package offers functions and data structures
designed to easily organize and visualize these data for applications in geology,
paleolimnology, dendrochronology, and paleoclimate. See Dunnington and Spooner (2018)
<doi:10.1139/facets-2017-0026>.
Author: Dewey Dunnington [aut, cre]
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between mudata2 versions 1.0.2.1 dated 2018-08-19 and 1.0.4 dated 2018-12-08
DESCRIPTION | 13 - MD5 | 34 +-- R/biplot.R | 4 R/mudata.R | 6 R/mudata.io.R | 26 +- R/mudata_subset.R | 18 + R/types.R | 2 data/alta_lake.rda |binary data/kentvillegreenwood.rda |binary data/long_lake.rda |binary data/ns_climate.rda |binary data/pocmaj.rda |binary data/pocmajsum.rda |binary data/second_lake_temp.rda |binary inst/doc/mudata.html | 330 ++++++++++++++++++------------------ inst/doc/mudata_create.html | 90 ++++----- tests/testthat/test_mudata.io.R | 47 +++++ tests/testthat/test_mudata_subset.R | 8 18 files changed, 316 insertions(+), 262 deletions(-)
Title: Statistical Toolbox for Radiometric Geochronology
Description: Plots U-Pb data on Wetherill and Tera-Wasserburg concordia diagrams. Calculates concordia and discordia ages. Performs linear regression of measurements with correlated errors using 'York', 'Titterington' and 'Ludwig' approaches. Generates Kernel Density Estimates (KDEs) and Cumulative Age Distributions (CADs). Produces Multidimensional Scaling (MDS) configurations and Shepard plots of multi-sample detrital datasets using the Kolmogorov-Smirnov distance as a dissimilarity measure. Calculates 40Ar/39Ar ages, isochrons, and age spectra. Computes weighted means accounting for overdispersion. Calculates U-Th-He (single grain and central) ages, logratio plots and ternary diagrams. Processes fission track data using the external detector method and LA-ICP-MS, calculates central ages and plots fission track and other data on radial (a.k.a. 'Galbraith') plots. Constructs total Pb-U, Pb-Pb, K-Ca, Re-Os, Sm-Nd, Lu-Hf, Rb-Sr and 230Th-U isochrons as well as 230Th-U evolution plots.
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between IsoplotR versions 2.2 dated 2018-11-09 and 2.3 dated 2018-12-08
DESCRIPTION | 8 - MD5 | 34 +++--- R/UPb.R | 15 +- R/age.R | 14 ++ R/agespectrum.R | 44 +++++--- R/botev.R | 10 - R/commonPb.R | 1 R/errorellipse.R | 4 R/io.R | 236 +++++++++++++++++++++++++++++++------------ R/isochron.R | 14 +- R/kde.R | 7 - R/radialplot.R | 4 R/weightedmean.R | 280 ++++++++++++++++++++++++++++------------------------ man/age.Rd | 9 + man/agespectrum.Rd | 25 +++- man/isochron.Rd | 3 man/read.data.Rd | 87 ++++++++++------ man/weightedmean.Rd | 100 ++++++++++-------- 18 files changed, 558 insertions(+), 337 deletions(-)
Title: Finds an Optimal System of Distinct Representatives
Description: Provides routines for finding an Optimal System of Distinct Representatives (OSDR), as defined by D.Gale (1968) <doi:10.1016/S0021-9800(68)80039-0>.
Author: Massimo Cannas [aut, cre]
Maintainer: Massimo Cannas <massimo.cannas@unica.it>
Diff between OSDR versions 1.1 dated 2018-10-08 and 1.1.2 dated 2018-12-08
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- build/partial.rdb |binary man/OSDR-package.Rd | 10 +++------- man/OSDR.Rd | 17 +++++++++++------ man/exdata.Rd | 25 +++++++++++++++---------- man/listmat.Rd | 6 +++--- man/matlist.Rd | 4 ++-- 8 files changed, 45 insertions(+), 39 deletions(-)
Title: Extract Decennial Census and American Community Survey Data
Description: Download summary files from Census Bureau <https://www2.census.gov/>
and extract data, in particular high resolution data at
block, block group, and tract level, from decennial census and
American Community Survey 1-year and 5-year estimates.
Author: Guanglai Li
Maintainer: Guanglai Li <liguanglai@gmail.com>
Diff between totalcensus versions 0.5.0 dated 2018-10-25 and 0.5.1 dated 2018-12-08
DESCRIPTION | 10 ++--- MD5 | 26 +++++++------- R/data_acs.R | 30 ++++++++++++++++ R/quiet_global_variable_in_cran_check.R | 2 - R/read_acs1year.R | 57 +++++++++++++++++++++----------- R/read_acs5year.R | 39 +++++++++++++++------ R/search_census_and_acs.R | 14 +++++-- R/utilities.R | 2 - data/datalist | 1 data/dict_acs5_table.RData |binary data/lookup_acs5year_2017.RData |only man/dict_acs5_table.Rd | 2 - man/lookup_acs5year_2017.Rd |only man/read_acs1year.Rd | 6 ++- man/read_acs5year.Rd | 6 ++- 15 files changed, 138 insertions(+), 57 deletions(-)
Title: Fitting Point Process Models via the Palm Likelihood
Description: Functions to fit point process models using the Palm likelihood. First proposed by Tanaka, Ogata, and Stoyan (2008) <DOI:10.1002/bimj.200610339>, maximisation of the Palm likelihood can provide computationally efficient parameter estimation for point process models in situations where the full likelihood is intractable. This package is chiefly focused on Neyman-Scott point processes, but can also fit the void processes proposed by Jones-Todd et al. (in press) <DOI:10.1002/sim.8046>. The development of this package was motivated by the analysis of capture-recapture surveys on which individuals cannot be identified---the data from which can conceptually be seen as a clustered point process (Stevenson, Borchers, and Fewster, in press <DOI:10.1111/biom.12983>). As such, some of the functions in this package are specifically for the estimation of cetacean density from two-camera aerial surveys.
Author: Ben Stevenson <ben.stevenson@auckland.ac.nz>
Maintainer: Ben Stevenson <ben.stevenson@auckland.ac.nz>
Diff between palm versions 1.1.2 dated 2018-11-14 and 1.1.3 dated 2018-12-08
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NEWS | 5 +++++ tests/testthat/test-fits.r | 3 ++- 4 files changed, 15 insertions(+), 9 deletions(-)
Title: A Rules Engine Based on 'Drools'
Description: An interface for using the popular Java based Drools, which is a Business Rule Management System (See <https://www.drools.org> for more information). This package provides data scientists an intuitive interface to execute business rules on datasets for the purpose of analysis or designing intelligent systems, while leveraging the Drools rule engine. Rules written in DRL format accepted natively by Drools can also be executed through an R interface. Credits to Mu Sigma for their continued support throughout the development of the package.
Author: Ashwin Raaghav [aut],
SMS Chauhan [aut],
Naren Srinivasan [aut],
Dheekshitha PS [aut],
Zubin Dowlaty [aut],
Mayukh Bose [aut],
Arushi Khattri [aut],
Mu Sigma, Inc. [cre]
Maintainer: "Mu Sigma, Inc." <ird.experiencelab@mu-sigma.com>
Diff between Rdrools versions 1.1.0 dated 2018-07-11 and 1.1.1 dated 2018-12-08
Rdrools-1.1.0/Rdrools/inst/java/drools-1.1.0.jar |only Rdrools-1.1.1/Rdrools/DESCRIPTION | 33 +++++----- Rdrools-1.1.1/Rdrools/MD5 | 10 +-- Rdrools-1.1.1/Rdrools/R/Rdrools_package.R | 8 +- Rdrools-1.1.1/Rdrools/inst/doc/Executing_Business_Rules_At_Scale_With_RDrools_using_Drools.html | 4 - Rdrools-1.1.1/Rdrools/inst/java/drools-1.1.1.jar |only Rdrools-1.1.1/Rdrools/man/Rdrools.Rd | 8 +- 7 files changed, 33 insertions(+), 30 deletions(-)
Title: Programming with Big Data -- Base Wrappers for Distributed
Matrices
Description: An interface to and extensions for the 'PBLAS' and 'ScaLAPACK'
numerical libraries. This enables R to utilize distributed linear algebra
for codes written in the 'SPMD' fashion. This interface is deliberately
low-level and mimics the style of the native libraries it wraps. For a much
higher level way of managing distributed matrices, see the 'pbdDMAT'
package.
Author: Drew Schmidt [aut, cre],
Wei-Chen Chen [aut],
Sebastien Lamy de la Chapelle [aut],
George Ostrouchov [aut],
Pragneshkumar Patel [aut],
Ewan Higgs [ctb]
Maintainer: Drew Schmidt <wrathematics@gmail.com>
Diff between pbdBASE versions 0.4-5.2 dated 2018-11-24 and 0.5-0 dated 2018-12-08
ChangeLog | 16 DESCRIPTION | 31 - MD5 | 229 +++---- NAMESPACE | 11 R/base_matexp.r | 1 R/base_mpi_blacs.r | 144 +++- R/base_pblas_level3.r | 32 - R/base_qr.r | 90 ++ R/base_scalapack.r | 18 R/base_scalapack_utility.r | 121 +-- R/coords.r | 22 R/misc.r | 12 R/pbdBASE-package.r | 4 R/pkg_blacs_apts.r | 31 - R/utility_blacs.r | 28 README.md | 27 configure | 1050 +++++++++++++++++++++++++++++++++- configure.ac | 3 inst/CITATION | 1 inst/RNACI/RNACI.h | 485 +++++++-------- inst/doc/pbdBASE-guide.Rnw | 5 inst/doc/pbdBASE-guide.pdf |binary man/BASE-Global-Environment.Rd | 3 man/base.blacs_gridinit.Rd |only man/base.crossprod.Rd | 1 man/base.dallreduce.Rd | 1 man/base.descinit.Rd | 1 man/base.dhilbmk.Rd | 1 man/base.dim0.Rd | 1 man/base.free_blacs_system_handle.Rd |only man/base.indxg2p.Rd | 1 man/base.matexp.Rd | 1 man/base.maxdim.Rd | 1 man/base.minctxt.Rd | 1 man/base.nbd.Rd | 12 man/base.numroc.Rd | 1 man/base.ownany.Rd | 18 man/base.p_matexp_pade_wrap.Rd | 1 man/base.p_matpow_by_squaring_wrap.Rd | 1 man/base.pdchtri.Rd | 1 man/base.pdclvar.Rd | 1 man/base.pdhilbmk.Rd | 1 man/base.pdmkcpn1.Rd | 1 man/base.pdmvsum.Rd | 1 man/base.pdsweep.Rd | 1 man/base.procgrid.Rd | 1 man/base.rcolcpy.Rd | 1 man/base.rcolcpy2.Rd | 1 man/base.redist.Rd | 1 man/base.rl2blas.Rd | 1 man/base.rl2insert.Rd | 1 man/base.rpdgecon.Rd | 1 man/base.rpdgelqf.Rd |only man/base.rpdgels.Rd | 1 man/base.rpdgemm.Rd | 1 man/base.rpdgemr2d.Rd | 1 man/base.rpdgeqpf.Rd | 5 man/base.rpdgesv.Rd | 1 man/base.rpdgesvd.Rd | 5 man/base.rpdgetrf.Rd | 1 man/base.rpdgetri.Rd | 1 man/base.rpdlange.Rd | 1 man/base.rpdlaprnt.Rd | 1 man/base.rpdorglq.Rd |only man/base.rpdorgqr.Rd | 1 man/base.rpdormqr.Rd | 1 man/base.rpdpotrf.Rd | 1 man/base.rpdsyevr.Rd | 1 man/base.rpdsyevx.Rd | 1 man/base.rpdtran.Rd | 1 man/base.rpdtrcon.Rd | 1 man/base.rrowcpy.Rd | 1 man/base.rrowcpy2.Rd | 1 man/base.tri2zero.Rd | 1 man/base.valid_context.Rd | 1 man/blacs-max.Rd | 1 man/blacs-min.Rd | 3 man/blacs-p2p.Rd | 3 man/blacs-sums.Rd | 3 man/blacs_apts.Rd |only man/blacsexit.Rd | 17 man/coords.Rd | 2 man/coordspair.Rd | 2 man/diag.Rd | 5 man/finalizer.Rd | 3 man/g2l_coord.Rd | 10 man/g2lcoord.Rd | 1 man/get.comm.from.ICTXT.Rd |only man/gridexit.Rd | 2 man/gridinfo.Rd | 28 man/gridinit.Rd | 12 man/init.grid.Rd | 18 man/l2g_coord.Rd | 10 man/lclgblmat.Rd | 3 man/numroc2.Rd | 1 man/pbdBASE-package.Rd | 9 man/pcoords.Rd | 26 man/sys2blacs.handle.Rd |only src/Makevars.in | 24 src/Makevars.win | 8 src/base/expm/matexp.c | 2 src/base/utils/dmat_redist.f | 3 src/base/utils/scale.c | 11 src/base_lm.c | 4 src/base_matexp.c | 7 src/base_mpi_blacs.c | 74 +- src/base_p_matexp.c | 4 src/base_putil.c | 7 src/base_qr.c | 108 +++ src/base_scalapack.c | 82 -- src/base_variance.c | 2 src/comm_utils.c | 39 - src/export_blacs/pkg_global.h | 4 src/export_blacs/pkg_tools.c | 48 + src/other.c | 16 src/pbdBASE.h | 17 src/pbdBASE_native.c |only src/scalapack.h | 17 src/svd.c |only vignettes/pbdBASE-guide.Rnw | 5 120 files changed, 2169 insertions(+), 920 deletions(-)
Title: Dynamic Simulation and Testing for Single-Equation ARDL Models
Description: While autoregressive distributed lag (ARDL) models allow for extremely flexible dynamics, interpreting substantive significance of complex lag structures remains difficult. This package is designed to assist users in dynamically simulating and plotting the results of various ARDL models. It also contains post-estimation diagnostics, including a test for cointegration when estimating the error-correction variant of the autoregressive distributed lag model (Pesaran, Shin, and Smith 2001 <doi:10.1002/jae.616>).
Author: Soren Jordan [aut, cre, cph],
Andrew Q. Philips [aut]
Maintainer: Soren Jordan <sorenjordanpols@gmail.com>
Diff between dynamac versions 0.1.4 dated 2018-05-09 and 0.1.5 dated 2018-12-08
dynamac-0.1.4/dynamac/inst/doc/dynamac-manual.pdf |only dynamac-0.1.4/dynamac/man/area.simulation.graph.Rd |only dynamac-0.1.4/dynamac/man/spike.simulation.graph.Rd |only dynamac-0.1.5/dynamac/DESCRIPTION | 14 dynamac-0.1.5/dynamac/MD5 | 39 - dynamac-0.1.5/dynamac/NAMESPACE | 5 dynamac-0.1.5/dynamac/R/dynamac.R | 538 ++++++++----------- dynamac-0.1.5/dynamac/build/vignette.rds |binary dynamac-0.1.5/dynamac/data/france.data.rda |only dynamac-0.1.5/dynamac/inst/doc/dynamac-vignette.R | 30 - dynamac-0.1.5/dynamac/inst/doc/dynamac-vignette.Rmd | 51 + dynamac-0.1.5/dynamac/inst/doc/dynamac-vignette.html | 365 +++++++----- dynamac-0.1.5/dynamac/inst/dynamac-manual.pdf |only dynamac-0.1.5/dynamac/man/area.simulation.plot.Rd |only dynamac-0.1.5/dynamac/man/dynardl.Rd | 74 +- dynamac-0.1.5/dynamac/man/dynardl.auto.correlated.Rd | 6 dynamac-0.1.5/dynamac/man/france.data.Rd |only dynamac-0.1.5/dynamac/man/ineq.Rd | 2 dynamac-0.1.5/dynamac/man/lshift.Rd | 4 dynamac-0.1.5/dynamac/man/spike.simulation.plot.Rd |only dynamac-0.1.5/dynamac/tests |only dynamac-0.1.5/dynamac/vignettes/dynamac-vignette.Rmd | 51 + dynamac-0.1.5/dynamac/vignettes/timeseriesrj.bib | 403 +++++++++----- 23 files changed, 910 insertions(+), 672 deletions(-)
Title: Rarefaction Tool Kit
Description: Rarefy data, calculate diversity and plot the results.
Author: Paul Saary, Falk Hildebrand
Maintainer: Paul Saary <rtk@paulsaary.de>
Diff between rtk versions 0.2.5.4 dated 2018-02-11 and 0.2.5.7 dated 2018-12-08
DESCRIPTION | 8 MD5 | 33 +- R/rarefaction.R | 4 R/rarefaction.plots.R | 5 build/partial.rdb |binary man/plot.rarefaction.Rd | 2 man/rtk.Rd | 2 src/ClStr2Mat.cpp | 589 +++++++++++++++++++++++++++++++++++------------- src/ClStr2Mat.h | 77 +++++- src/IO.cpp | 68 ++++- src/IO.h | 17 + src/Math.h | 1 src/Matrix.cpp | 492 ++++++++++++++++++++++------------------ src/Matrix.h | 18 + src/RRare.cpp | 2 src/Rwrapper.cpp | 2 src/gzstream.h |only src/options.h | 8 18 files changed, 907 insertions(+), 421 deletions(-)
Title: Open Population Capture-Recapture
Description: Functions for non-spatial and spatial open-population capture-recapture analysis.
Author: Murray Efford [aut, cre] (<https://orcid.org/0000-0001-5231-5184>)
Maintainer: Murray Efford <murray.efford@otago.ac.nz>
Diff between openCR versions 1.3.0 dated 2018-11-26 and 1.3.1 dated 2018-12-08
DESCRIPTION | 12 ++--- MD5 | 24 +++++----- NAMESPACE | 3 - NEWS | 8 +++ R/simulate.R | 21 ++++++--- R/ucare.R | 92 +++++++++++++++++++++++------------------- inst/CITATION | 2 inst/doc/openCR-manual.pdf |binary inst/doc/openCR-vignette.Rmd | 2 inst/doc/openCR-vignette.pdf |binary man/AIC.openCR.Rd | 2 man/openCR-package.Rd | 4 - vignettes/openCR-vignette.Rmd | 2 13 files changed, 99 insertions(+), 73 deletions(-)
Title: Searching for Optimal MDS Procedure for Metric and
Interval-Valued Data
Description: Selecting the optimal multidimensional scaling (MDS) procedure for metric data via metric MDS (ratio, interval, mspline) and nonmetric MDS (ordinal). Selecting the optimal multidimensional scaling (MDS) procedure for interval-valued data via metric MDS (ratio, interval, mspline).Selecting the optimal multidimensional scaling procedure for interval-valued data by varying all combinations of normalization and optimization methods.Selecting the optimal MDS procedure for statistical data referring to the evaluation of tourist attractiveness of Lower Silesian counties.
(Borg, I., Groenen, P.J.F., Mair, P. (2013) <doi:10.1007/978-3-642-31848-1>,
Groenen, P.J.F., Winsberg, S., Rodriguez, O., Diday, E. (2006) <doi:10.1016/j.csda.2006.04.003>,
Walesiak, M. (2016) <doi:10.15611/ekt.2016.2.01>,
Walesiak, M. (2017) <doi:10.15611/ekt.2017.3.01>).
Author: Marek Walesiak <marek.walesiak@ue.wroc.pl>, Andrzej Dudek <andrzej.dudek@ue.wroc.pl>
Maintainer: Andrzej Dudek <andrzej.dudek@ue.wroc.pl>
Diff between mdsOpt versions 0.3-2 dated 2018-10-03 and 0.3-3 dated 2018-12-08
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/drawIsoquants.r | 4 ++-- man/data_lower_silesian.rd | 2 +- 4 files changed, 11 insertions(+), 11 deletions(-)
Title: 'ggplot2' Based Plots with Statistical Details
Description: Extension of 'ggplot2', 'ggstatsplot' creates graphics with details
from statistical tests included in the plots themselves. It is targeted primarily at
behavioral sciences community to provide a one-line code to generate information-rich plots for
statistical analysis. of continuous (violin plots, scatterplots, histograms) or
categorical (pie charts) data. Currently, it supports only the most common types
of statistical tests: parametric, nonparametric, robust, and bayesian
versions of t-test/anova, correlation analyses, contingency table analysis,
and regression analyses.
Author: Indrajeet Patil [aut, cre] (<https://orcid.org/0000-0003-1995-6531>),
Chuck Powell [ctb] (<https://orcid.org/0000-0002-3606-2188>)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between ggstatsplot versions 0.0.6 dated 2018-09-30 and 0.0.7 dated 2018-12-08
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Title: Automatic Generation of Exams in R
Description: Automatic generation of exams based on exercises in Markdown or LaTeX format,
possibly including R code for dynamic generation of exercise elements.
Exercise types include single-choice and multiple-choice questions, arithmetic problems,
string questions, and combinations thereof (cloze). Output formats include standalone
files (PDF, HTML, Docx, ODT, ...), Moodle XML, QTI 1.2 (for OLAT/OpenOLAT), QTI 2.1,
Blackboard, ARSnova, and TCExam. In addition to fully customizable PDF exams, a
standardized PDF format (NOPS) is provided that can be printed, scanned, and automatically evaluated.
Author: Achim Zeileis [aut, cre] (<https://orcid.org/0000-0003-0918-3766>),
Bettina Gruen [aut] (<https://orcid.org/0000-0001-7265-4773>),
Friedrich Leisch [aut] (<https://orcid.org/0000-0001-7278-1983>),
Nikolaus Umlauf [aut],
Mirko Birbaumer [ctb],
Dominik Ernst [ctb],
Patrik Keller [ctb],
Niels Smits [ctb],
Reto Stauffer [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between exams versions 2.3-1 dated 2018-05-11 and 2.3-2 dated 2018-12-08
DESCRIPTION | 8 MD5 | 73 NAMESPACE | 16 NEWS | 57 R/exams2arsnova.R | 8 R/exams2ifat.R |only R/exams2nops.R | 14 R/exams2openolat.R | 14 R/exams2pdf.R | 12 R/exams2qti12.R | 49 R/exams2qti21.R | 300 ++- R/nops_eval.R | 17 R/nops_scan.R | 42 R/pandoc.R | 11 R/read_exercise.R | 11 R/read_metainfo.R | 11 R/search_files.R | 7 R/tex2image.R | 2 R/xexams.R | 19 build/vignette.rds |binary inst/doc/exams.pdf |binary inst/doc/exams2.pdf | 3750 ++++++++++++++++++++------------------------ inst/exercises/Rlogo.Rnw | 2 inst/exercises/confint3.Rmd |only inst/exercises/confint3.Rnw |only inst/nops/hr.dcf | 64 inst/nops/ru.dcf |only inst/nops/sr.dcf |only inst/tex/exam.tex | 2 inst/tex/ifat.tex |only inst/tex/ifat8.tex |only inst/tex/oexam.tex | 2 inst/tex/osolution.tex | 2 inst/tex/solution.tex | 2 man/exams2nops.Rd | 5 man/exams2openolat.Rd | 15 man/exams2pdf.Rd | 4 man/include_supplement.Rd | 4 man/nops_eval.Rd | 5 man/nops_scan.Rd | 5 man/read_exercise.Rd | 8 41 files changed, 2340 insertions(+), 2201 deletions(-)
Title: Continuous Norming
Description: Conventional methods for producing standard scores in psychometrics or biometrics
are often plagued with "jumps" or "gaps" (i.e., discontinuities) in norm tables and low
confidence for assessing extreme scores. The continuous norming method introduced by A.
Lenhard et al. (2016), <doi:10.1177/1073191116656437>, generates continuous test norm
scores on the basis of the raw data from standardization samples, without requiring
assumptions about the distribution of the raw data: Norm scores are directly established
from raw data by modeling the latter ones as a function of both percentile scores and an
explanatory variable (e.g., age). The method minimizes bias arising from sampling and
measurement error, while handling marked deviations from normality, addressing bottom
or ceiling effects and capturing almost all of the variance in the original norm data
sample.
Author: Wolfgang Lenhard [cre, aut] (<https://orcid.org/0000-0002-8184-6889>),
Alexandra Lenhard [aut],
Sebastian Gary [ctb]
Maintainer: Wolfgang Lenhard <wolfgang.lenhard@uni-wuerzburg.de>
Diff between cNORM versions 1.0.1 dated 2018-11-14 and 1.1.2 dated 2018-12-08
DESCRIPTION | 41 ++- MD5 | 74 +++--- NAMESPACE | 6 NEWS.md | 72 ++++++ R/boxcox.R | 2 R/cNORM.R | 23 +- R/modelling.R | 389 +++++++++++++++++++++++++++++------ R/plot.R | 425 +++++++++++++++++++++------------------ R/predict.R | 218 ++++++++++++-------- R/preparation.R | 31 ++ README.md | 53 ++-- data/CDC.rda |binary data/life.rda |binary data/mortality.rda |binary data/ppvt.rda |binary inst/doc/cNORM-Demo.R | 8 inst/doc/cNORM-Demo.Rmd | 55 +++-- inst/doc/cNORM-Demo.html | 191 ++++++----------- inst/shiny/server.R | 70 +++++- inst/shiny/ui.R | 169 ++++++++++----- inst/shiny/www/introduction.html | 6 man/bestModel.Rd | 6 man/cNORM.Rd | 11 - man/checkConsistency.Rd | 5 man/cnorm.cv.Rd |only man/derivationTable.Rd | 4 man/derive.Rd | 14 - man/normTable.Rd | 22 +- man/plotDerivative.Rd | 5 man/plotNorm.Rd | 6 man/plotPercentileSeries.Rd | 2 man/plotSubset.Rd | 5 man/predictNorm.Rd | 5 man/predictRawBC.Rd | 2 man/prepareData.Rd | 5 man/rankBySlidingWindow.Rd | 9 man/rawTable.Rd | 20 - vignettes/cNORM-Demo.Rmd | 55 +++-- vignettes/cnorm.cv.png |only 39 files changed, 1298 insertions(+), 711 deletions(-)
Title: Bridge Between 'R' and 'Scala' with Callbacks
Description: 'Scala' <http://www.scala-lang.org/> is embedded in 'R' and callbacks from 'Scala' to 'R' are available. Support is provided to write 'R' packages that access 'Scala'. After installation, please run 'rscala::scalaConfig()'.
Author: David B. Dahl [aut, cre]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between rscala versions 3.2.4 dated 2018-11-05 and 3.2.5 dated 2018-12-08
rscala-3.2.4/rscala/inst/java/scala-2.11/rscala_2.11-3.2.4.jar |only rscala-3.2.4/rscala/inst/java/scala-2.12/rscala_2.12-3.2.4.jar |only rscala-3.2.4/rscala/inst/java/scala-2.13.0-M5/rscala_2.13.0-M5-3.2.4.jar |only rscala-3.2.4/rscala/java/rscala_2.12-3.2.4-sources.jar |only rscala-3.2.5/rscala/DESCRIPTION | 12 +-- rscala-3.2.5/rscala/MD5 | 25 ++++--- rscala-3.2.5/rscala/NAMESPACE | 1 rscala-3.2.5/rscala/NEWS | 5 + rscala-3.2.5/rscala/R/scalaConfig.R | 32 ++++++---- rscala-3.2.5/rscala/R/scalaSBT.R | 32 +++++++++- rscala-3.2.5/rscala/R/scalaSBTBuildInstallRestart.R |only rscala-3.2.5/rscala/R/scalaVersionJARs.R | 3 rscala-3.2.5/rscala/inst/doc/rscala.pdf |binary rscala-3.2.5/rscala/inst/java/scala-2.11/rscala_2.11-3.2.5.jar |only rscala-3.2.5/rscala/inst/java/scala-2.12/rscala_2.12-3.2.5.jar |only rscala-3.2.5/rscala/inst/java/scala-2.13.0-M5/rscala_2.13.0-M5-3.2.5.jar |only rscala-3.2.5/rscala/inst/rstudio |only rscala-3.2.5/rscala/java/rscala_2.12-3.2.5-sources.jar |only rscala-3.2.5/rscala/man/scalaSBTBuildInstallRestart.Rd |only 19 files changed, 79 insertions(+), 31 deletions(-)
Title: Dynamic Documents for R
Description: Convert R Markdown documents into a variety of formats.
Author: JJ Allaire [aut],
Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Jonathan McPherson [aut],
Javier Luraschi [aut],
Kevin Ushey [aut],
Aron Atkins [aut],
Hadley Wickham [aut],
Joe Cheng [aut],
Winston Chang [aut],
Richard Iannone [aut] (<https://orcid.org/0000-0003-3925-190X>),
Jeff Allen [ctb],
Barret Schloerke [ctb],
Roy Storey [ctb],
Rob Hyndman [ctb],
Ruben Arslan [ctb],
Frederik Aust [ctb] (<https://orcid.org/0000-0003-4900-788X>),
Christophe Dervieux [ctb],
RStudio, Inc. [cph],
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/rmd/h/jquery-AUTHORS.txt),
jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in
inst/rmd/h/jqueryui-AUTHORS.txt),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Alexander Farkas [ctb, cph] (html5shiv library),
Scott Jehl [ctb, cph] (Respond.js library),
Ivan Sagalaev [ctb, cph] (highlight.js library),
Greg Franko [ctb, cph] (tocify library),
John MacFarlane [ctb, cph] (Pandoc templates),
Google, Inc. [ctb, cph] (ioslides library),
Dave Raggett [ctb] (slidy library),
W3C [cph] (slidy library),
Dave Gandy [ctb, cph] (Font-Awesome),
Ben Sperry [ctb] (Ionicons),
Drifty [cph] (Ionicons),
Aidan Lister [ctb, cph] (jQuery StickyTabs)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between rmarkdown versions 1.10 dated 2018-06-11 and 1.11 dated 2018-12-08
rmarkdown-1.10/rmarkdown/inst/NEWS |only rmarkdown-1.10/rmarkdown/inst/rmd/h/bootstrap-3.3.5 |only rmarkdown-1.10/rmarkdown/inst/rmd/h/fontawesome/css/fa-svg-with-js.css |only rmarkdown-1.10/rmarkdown/inst/rmd/h/fontawesome/fonts |only rmarkdown-1.10/rmarkdown/inst/rmd/h/fontawesome/js |only rmarkdown-1.10/rmarkdown/inst/rmd/h/ionicons-2.0.1 |only rmarkdown-1.10/rmarkdown/inst/rmd/h/jquery-1.11.3 |only rmarkdown-1.10/rmarkdown/inst/rmd/h/jqueryui-1.11.4 |only rmarkdown-1.10/rmarkdown/inst/rmd/h/tocify-1.9.1 |only rmarkdown-1.11/rmarkdown/DESCRIPTION | 27 rmarkdown-1.11/rmarkdown/MD5 | 323 +++++----- rmarkdown-1.11/rmarkdown/NAMESPACE | 13 rmarkdown-1.11/rmarkdown/NEWS.md |only rmarkdown-1.11/rmarkdown/R/base64.R | 2 rmarkdown-1.11/rmarkdown/R/beamer_presentation.R | 8 rmarkdown-1.11/rmarkdown/R/draft.R | 2 rmarkdown-1.11/rmarkdown/R/html_dependencies.R | 134 ++-- rmarkdown-1.11/rmarkdown/R/html_document.R | 69 +- rmarkdown-1.11/rmarkdown/R/html_document_base.R | 18 rmarkdown-1.11/rmarkdown/R/html_notebook.R | 2 rmarkdown-1.11/rmarkdown/R/html_notebook_output.R | 8 rmarkdown-1.11/rmarkdown/R/html_paged.R | 4 rmarkdown-1.11/rmarkdown/R/html_resource_copy.R | 8 rmarkdown-1.11/rmarkdown/R/html_resources.R | 272 +++----- rmarkdown-1.11/rmarkdown/R/ioslides_presentation.R | 29 rmarkdown-1.11/rmarkdown/R/knit_print.R | 3 rmarkdown-1.11/rmarkdown/R/latex_dependencies.R | 2 rmarkdown-1.11/rmarkdown/R/md_document.R | 19 rmarkdown-1.11/rmarkdown/R/odt_document.R | 18 rmarkdown-1.11/rmarkdown/R/output_format.R | 20 rmarkdown-1.11/rmarkdown/R/pandoc.R | 89 +- rmarkdown-1.11/rmarkdown/R/params.R | 50 - rmarkdown-1.11/rmarkdown/R/pdf_document.R | 16 rmarkdown-1.11/rmarkdown/R/performance.R | 5 rmarkdown-1.11/rmarkdown/R/powerpoint_presentation.R | 33 - rmarkdown-1.11/rmarkdown/R/render.R | 198 +++++- rmarkdown-1.11/rmarkdown/R/render_site.R | 225 ++++++ rmarkdown-1.11/rmarkdown/R/rtf_document.R | 5 rmarkdown-1.11/rmarkdown/R/shiny.R | 82 -- rmarkdown-1.11/rmarkdown/R/shiny_prerendered.R | 201 ++++-- rmarkdown-1.11/rmarkdown/R/util.R | 125 ++- rmarkdown-1.11/rmarkdown/R/word_document.R | 27 rmarkdown-1.11/rmarkdown/inst/CITATION |only rmarkdown-1.11/rmarkdown/inst/rmd/h/bootstrap |only rmarkdown-1.11/rmarkdown/inst/rmd/h/default.html | 138 ++++ rmarkdown-1.11/rmarkdown/inst/rmd/h/fontawesome/css/all.css |only rmarkdown-1.11/rmarkdown/inst/rmd/h/fontawesome/css/v4-shims.css |only rmarkdown-1.11/rmarkdown/inst/rmd/h/fontawesome/webfonts |only rmarkdown-1.11/rmarkdown/inst/rmd/h/ionicons |only rmarkdown-1.11/rmarkdown/inst/rmd/h/jquery |only rmarkdown-1.11/rmarkdown/inst/rmd/h/jqueryui |only rmarkdown-1.11/rmarkdown/inst/rmd/h/pagedtable-1.1/css/pagedtable.css | 2 rmarkdown-1.11/rmarkdown/inst/rmd/h/tocify |only rmarkdown-1.11/rmarkdown/inst/rmd/ioslides/default.html | 4 rmarkdown-1.11/rmarkdown/inst/rmd/latex/default-1.17.0.2.tex | 3 rmarkdown-1.11/rmarkdown/inst/rmd/site |only rmarkdown-1.11/rmarkdown/inst/rstudio |only rmarkdown-1.11/rmarkdown/man/beamer_presentation.Rd | 18 rmarkdown-1.11/rmarkdown/man/draft.Rd | 3 rmarkdown-1.11/rmarkdown/man/github_document.Rd | 8 rmarkdown-1.11/rmarkdown/man/html-dependencies.Rd | 12 rmarkdown-1.11/rmarkdown/man/html_document.Rd | 8 rmarkdown-1.11/rmarkdown/man/html_document_base.Rd | 6 rmarkdown-1.11/rmarkdown/man/html_fragment.Rd | 11 rmarkdown-1.11/rmarkdown/man/html_notebook.Rd | 8 rmarkdown-1.11/rmarkdown/man/html_notebook_output.Rd | 15 rmarkdown-1.11/rmarkdown/man/html_vignette.Rd | 6 rmarkdown-1.11/rmarkdown/man/knitr_options_html.Rd | 5 rmarkdown-1.11/rmarkdown/man/knitr_options_pdf.Rd | 2 rmarkdown-1.11/rmarkdown/man/md_document.Rd | 11 rmarkdown-1.11/rmarkdown/man/navbar_html.Rd | 1 rmarkdown-1.11/rmarkdown/man/odt_document.Rd | 2 rmarkdown-1.11/rmarkdown/man/pandoc_args.Rd | 2 rmarkdown-1.11/rmarkdown/man/pandoc_exec.Rd |only rmarkdown-1.11/rmarkdown/man/pandoc_options.Rd | 4 rmarkdown-1.11/rmarkdown/man/pdf_document.Rd | 6 rmarkdown-1.11/rmarkdown/man/powerpoint_presentation.Rd | 2 rmarkdown-1.11/rmarkdown/man/render.Rd | 201 +++--- rmarkdown-1.11/rmarkdown/man/render_site.Rd | 172 +++-- rmarkdown-1.11/rmarkdown/man/render_supporting_files.Rd | 11 rmarkdown-1.11/rmarkdown/man/resolve_output_format.Rd | 4 rmarkdown-1.11/rmarkdown/man/rmd_metadata.Rd | 2 rmarkdown-1.11/rmarkdown/man/rtf_document.Rd | 7 rmarkdown-1.11/rmarkdown/man/run.Rd | 5 rmarkdown-1.11/rmarkdown/man/site_resources.Rd | 4 rmarkdown-1.11/rmarkdown/man/slidy_presentation.Rd | 15 rmarkdown-1.11/rmarkdown/man/tufte_handout.Rd | 2 rmarkdown-1.11/rmarkdown/man/word_document.Rd | 10 rmarkdown-1.11/rmarkdown/tests/rmd |only rmarkdown-1.11/rmarkdown/tests/shiny/04-prerendered-envir.html |only rmarkdown-1.11/rmarkdown/tests/testrmd.R |only rmarkdown-1.11/rmarkdown/tests/testthat/site/PageA.Rmd | 3 rmarkdown-1.11/rmarkdown/tests/testthat/site/PageB.rmd | 6 rmarkdown-1.11/rmarkdown/tests/testthat/test-notebook.R | 2 rmarkdown-1.11/rmarkdown/tests/testthat/test-params.R | 20 rmarkdown-1.11/rmarkdown/tests/testthat/test-site.R | 32 96 files changed, 1728 insertions(+), 1082 deletions(-)