Title: Machine Learning Models and Tools
Description: Meta-package for statistical and machine learning with a common interface for model fitting, prediction, performance assessment, and presentation of results. Supports predictive modeling of numerical, categorical, and censored time-to-event outcomes and resample (bootstrap and cross-validation) estimation of model performance.
Author: Brian J Smith [aut, cre]
Maintainer: Brian J Smith <brian-j-smith@uiowa.edu>
Diff between MachineShop versions 0.3.0 dated 2018-11-23 and 0.4.0 dated 2018-12-12
MachineShop-0.3.0/MachineShop/man/MLControl-class.Rd |only MachineShop-0.3.0/MachineShop/man/Resamples.Rd |only MachineShop-0.3.0/MachineShop/man/plot-method.Rd |only MachineShop-0.4.0/MachineShop/DESCRIPTION | 24 MachineShop-0.4.0/MachineShop/MD5 | 265 +- MachineShop-0.4.0/MachineShop/NAMESPACE | 84 MachineShop-0.4.0/MachineShop/NEWS.md | 30 MachineShop-0.4.0/MachineShop/R/AllClasses.R | 400 +-- MachineShop-0.4.0/MachineShop/R/ML_AdaBagModel.R |only MachineShop-0.4.0/MachineShop/R/ML_AdaBoostModel.R |only MachineShop-0.4.0/MachineShop/R/ML_BlackBoostModel.R |only MachineShop-0.4.0/MachineShop/R/ML_C50Model.R | 26 MachineShop-0.4.0/MachineShop/R/ML_CForestModel.R | 21 MachineShop-0.4.0/MachineShop/R/ML_CoxModel.R | 51 MachineShop-0.4.0/MachineShop/R/ML_EarthModel.R |only MachineShop-0.4.0/MachineShop/R/ML_FDAModel.R |only MachineShop-0.4.0/MachineShop/R/ML_GAMBoostModel.R |only MachineShop-0.4.0/MachineShop/R/ML_GBMModel.R | 27 MachineShop-0.4.0/MachineShop/R/ML_GLMBoostModel.R |only MachineShop-0.4.0/MachineShop/R/ML_GLMModel.R | 44 MachineShop-0.4.0/MachineShop/R/ML_GLMNetModel.R | 24 MachineShop-0.4.0/MachineShop/R/ML_KNNModel.R | 18 MachineShop-0.4.0/MachineShop/R/ML_LDAModel.R | 8 MachineShop-0.4.0/MachineShop/R/ML_LMModel.R | 36 MachineShop-0.4.0/MachineShop/R/ML_MDAModel.R |only MachineShop-0.4.0/MachineShop/R/ML_NNetModel.R | 6 MachineShop-0.4.0/MachineShop/R/ML_NaiveBayesModel.R |only MachineShop-0.4.0/MachineShop/R/ML_PLSModel.R | 6 MachineShop-0.4.0/MachineShop/R/ML_POLRModel.R | 9 MachineShop-0.4.0/MachineShop/R/ML_QDAModel.R | 8 MachineShop-0.4.0/MachineShop/R/ML_RPartModel.R |only MachineShop-0.4.0/MachineShop/R/ML_RandomForestModel.R | 12 MachineShop-0.4.0/MachineShop/R/ML_RangerModel.R |only MachineShop-0.4.0/MachineShop/R/ML_SVMModel.R | 33 MachineShop-0.4.0/MachineShop/R/ML_StackedModel.R | 43 MachineShop-0.4.0/MachineShop/R/ML_SuperModel.R | 25 MachineShop-0.4.0/MachineShop/R/ML_SurvRegModel.R | 43 MachineShop-0.4.0/MachineShop/R/ML_TreeModel.R |only MachineShop-0.4.0/MachineShop/R/ML_XGBModel.R | 59 MachineShop-0.4.0/MachineShop/R/MachineShop-package.R | 28 MachineShop-0.4.0/MachineShop/R/ModelFrame.R | 6 MachineShop-0.4.0/MachineShop/R/calibration.R | 79 MachineShop-0.4.0/MachineShop/R/confusion.R | 82 MachineShop-0.4.0/MachineShop/R/convert.R | 16 MachineShop-0.4.0/MachineShop/R/dependence.R | 36 MachineShop-0.4.0/MachineShop/R/diff.R | 74 MachineShop-0.4.0/MachineShop/R/fit.R | 21 MachineShop-0.4.0/MachineShop/R/lift.R | 57 MachineShop-0.4.0/MachineShop/R/metricinfo.R |only MachineShop-0.4.0/MachineShop/R/metrics.R |only MachineShop-0.4.0/MachineShop/R/modelinfo.R |only MachineShop-0.4.0/MachineShop/R/modelmetrics.R | 239 - MachineShop-0.4.0/MachineShop/R/plots.R | 250 +- MachineShop-0.4.0/MachineShop/R/predict.R | 13 MachineShop-0.4.0/MachineShop/R/resample.R | 129 - MachineShop-0.4.0/MachineShop/R/response.R | 30 MachineShop-0.4.0/MachineShop/R/setAs.R | 19 MachineShop-0.4.0/MachineShop/R/show.R | 42 MachineShop-0.4.0/MachineShop/R/summary.R | 135 - MachineShop-0.4.0/MachineShop/R/tune.R | 80 MachineShop-0.4.0/MachineShop/R/utils.R | 135 - MachineShop-0.4.0/MachineShop/R/varimp.R | 15 MachineShop-0.4.0/MachineShop/README.md | 1242 ++++++++-- MachineShop-0.4.0/MachineShop/inst/doc/Introduction.R | 101 MachineShop-0.4.0/MachineShop/inst/doc/Introduction.Rmd | 107 MachineShop-0.4.0/MachineShop/inst/doc/Introduction.html | 827 ++++-- MachineShop-0.4.0/MachineShop/inst/doc/MLModels.Rmd | 2 MachineShop-0.4.0/MachineShop/inst/doc/MLModels.html | 5 MachineShop-0.4.0/MachineShop/man/AdaBagModel.Rd |only MachineShop-0.4.0/MachineShop/man/AdaBoostModel.Rd |only MachineShop-0.4.0/MachineShop/man/BlackBoostModel.Rd |only MachineShop-0.4.0/MachineShop/man/C50Model.Rd | 13 MachineShop-0.4.0/MachineShop/man/CForestModel.Rd | 2 MachineShop-0.4.0/MachineShop/man/CoxModel.Rd | 16 MachineShop-0.4.0/MachineShop/man/EarthModel.Rd |only MachineShop-0.4.0/MachineShop/man/FDAModel.Rd |only MachineShop-0.4.0/MachineShop/man/GAMBoostModel.Rd |only MachineShop-0.4.0/MachineShop/man/GBMModel.Rd | 3 MachineShop-0.4.0/MachineShop/man/GLMBoostModel.Rd |only MachineShop-0.4.0/MachineShop/man/GLMModel.Rd | 16 MachineShop-0.4.0/MachineShop/man/GLMNetModel.Rd | 2 MachineShop-0.4.0/MachineShop/man/KNNModel.Rd | 2 MachineShop-0.4.0/MachineShop/man/LDAModel.Rd | 2 MachineShop-0.4.0/MachineShop/man/LMModel.Rd | 2 MachineShop-0.4.0/MachineShop/man/MDAModel.Rd |only MachineShop-0.4.0/MachineShop/man/MLControl.Rd |only MachineShop-0.4.0/MachineShop/man/MLModel.Rd | 2 MachineShop-0.4.0/MachineShop/man/MachineShop-package.Rd | 28 MachineShop-0.4.0/MachineShop/man/ModelFrame-methods.Rd | 7 MachineShop-0.4.0/MachineShop/man/NNetModel.Rd | 2 MachineShop-0.4.0/MachineShop/man/NaiveBayesModel.Rd |only MachineShop-0.4.0/MachineShop/man/PLSModel.Rd | 2 MachineShop-0.4.0/MachineShop/man/POLRModel.Rd | 2 MachineShop-0.4.0/MachineShop/man/QDAModel.Rd | 2 MachineShop-0.4.0/MachineShop/man/RPartModel.Rd |only MachineShop-0.4.0/MachineShop/man/RandomForestModel.Rd | 2 MachineShop-0.4.0/MachineShop/man/RangerModel.Rd |only MachineShop-0.4.0/MachineShop/man/SVMModel.Rd | 2 MachineShop-0.4.0/MachineShop/man/StackedModel.Rd | 10 MachineShop-0.4.0/MachineShop/man/SuperModel.Rd | 12 MachineShop-0.4.0/MachineShop/man/SurvRegModel.Rd | 16 MachineShop-0.4.0/MachineShop/man/TreeModel.Rd |only MachineShop-0.4.0/MachineShop/man/XGBModel.Rd | 25 MachineShop-0.4.0/MachineShop/man/calibration.Rd | 32 MachineShop-0.4.0/MachineShop/man/confusion.Rd | 35 MachineShop-0.4.0/MachineShop/man/dependence.Rd | 20 MachineShop-0.4.0/MachineShop/man/diff-methods.Rd | 25 MachineShop-0.4.0/MachineShop/man/figures/README-unnamed-chunk-10-1.png |binary MachineShop-0.4.0/MachineShop/man/figures/README-unnamed-chunk-11-1.png |binary MachineShop-0.4.0/MachineShop/man/figures/README-unnamed-chunk-12-1.png |binary MachineShop-0.4.0/MachineShop/man/figures/README-unnamed-chunk-13-1.png |binary MachineShop-0.4.0/MachineShop/man/figures/README-unnamed-chunk-13-2.png |binary MachineShop-0.4.0/MachineShop/man/figures/README-unnamed-chunk-13-3.png |binary MachineShop-0.4.0/MachineShop/man/figures/README-unnamed-chunk-14-1.png |binary MachineShop-0.4.0/MachineShop/man/figures/README-unnamed-chunk-14-2.png |binary MachineShop-0.4.0/MachineShop/man/figures/README-unnamed-chunk-14-3.png |binary MachineShop-0.4.0/MachineShop/man/figures/README-unnamed-chunk-15-1.png |binary MachineShop-0.4.0/MachineShop/man/figures/README-unnamed-chunk-15-2.png |only MachineShop-0.4.0/MachineShop/man/figures/README-unnamed-chunk-15-3.png |only MachineShop-0.4.0/MachineShop/man/figures/README-unnamed-chunk-16-1.png |binary MachineShop-0.4.0/MachineShop/man/figures/README-unnamed-chunk-16-2.png |only MachineShop-0.4.0/MachineShop/man/figures/README-unnamed-chunk-16-3.png |only MachineShop-0.4.0/MachineShop/man/figures/README-unnamed-chunk-17-1.png |only MachineShop-0.4.0/MachineShop/man/figures/README-unnamed-chunk-17-2.png |only MachineShop-0.4.0/MachineShop/man/figures/README-unnamed-chunk-17-3.png |only MachineShop-0.4.0/MachineShop/man/figures/README-unnamed-chunk-18-1.png |only MachineShop-0.4.0/MachineShop/man/figures/README-unnamed-chunk-18-2.png |only MachineShop-0.4.0/MachineShop/man/figures/README-unnamed-chunk-19-1.png |only MachineShop-0.4.0/MachineShop/man/figures/README-unnamed-chunk-5-1.png |binary MachineShop-0.4.0/MachineShop/man/figures/README-unnamed-chunk-7-1.png |binary MachineShop-0.4.0/MachineShop/man/figures/README-unnamed-chunk-8-1.png |binary MachineShop-0.4.0/MachineShop/man/figures/README-unnamed-chunk-9-1.png |binary MachineShop-0.4.0/MachineShop/man/fit-methods.Rd | 17 MachineShop-0.4.0/MachineShop/man/lift.Rd | 25 MachineShop-0.4.0/MachineShop/man/metricinfo.Rd |only MachineShop-0.4.0/MachineShop/man/metrics.Rd |only MachineShop-0.4.0/MachineShop/man/modelinfo.Rd |only MachineShop-0.4.0/MachineShop/man/modelmetrics.Rd | 65 MachineShop-0.4.0/MachineShop/man/plot-methods.Rd |only MachineShop-0.4.0/MachineShop/man/predict.Rd | 9 MachineShop-0.4.0/MachineShop/man/resample-methods.Rd | 62 MachineShop-0.4.0/MachineShop/man/response-methods.Rd | 11 MachineShop-0.4.0/MachineShop/man/summary-methods.Rd | 43 MachineShop-0.4.0/MachineShop/man/t.test.Rd | 22 MachineShop-0.4.0/MachineShop/man/tune-methods.Rd | 55 MachineShop-0.4.0/MachineShop/man/varimp.Rd | 4 MachineShop-0.4.0/MachineShop/tests/testthat/Rplots.pdf |binary MachineShop-0.4.0/MachineShop/tests/testthat/test-ML_AdaBagModel.R |only MachineShop-0.4.0/MachineShop/tests/testthat/test-ML_AdaBoostModel.R |only MachineShop-0.4.0/MachineShop/tests/testthat/test-ML_BlackBoostModel.R |only MachineShop-0.4.0/MachineShop/tests/testthat/test-ML_EarthModel.R |only MachineShop-0.4.0/MachineShop/tests/testthat/test-ML_FDAModel.R |only MachineShop-0.4.0/MachineShop/tests/testthat/test-ML_GAMBoostModel.R |only MachineShop-0.4.0/MachineShop/tests/testthat/test-ML_GLMBoostModel.R |only MachineShop-0.4.0/MachineShop/tests/testthat/test-ML_MDAModel.R |only MachineShop-0.4.0/MachineShop/tests/testthat/test-ML_NaiveBayesModel.R |only MachineShop-0.4.0/MachineShop/tests/testthat/test-ML_RPartModel.R |only MachineShop-0.4.0/MachineShop/tests/testthat/test-ML_RangerModel.R |only MachineShop-0.4.0/MachineShop/tests/testthat/test-ML_TreeModel.R |only MachineShop-0.4.0/MachineShop/tests/testthat/test-model-comparisons.R | 4 MachineShop-0.4.0/MachineShop/vignettes/Introduction.Rmd | 107 MachineShop-0.4.0/MachineShop/vignettes/MLModels.Rmd | 2 162 files changed, 3755 insertions(+), 2025 deletions(-)
Title: Read Data from JSTOR/DfR
Description: Functions and helpers to import metadata, ngrams and full-texts
delivered by Data for Research by JSTOR.
Author: Thomas Klebel [aut, cre] (<https://orcid.org/0000-0002-7331-4751>)
Maintainer: Thomas Klebel <t.klebel@hotmail.com>
Diff between jstor versions 0.3.5 dated 2018-11-25 and 0.3.6 dated 2018-12-12
DESCRIPTION | 10 ++++---- MD5 | 32 ++++++++++++++-------------- NEWS.md | 5 ++++ R/augmentations.R | 5 +++- R/authors.R | 22 ++++++++++++++----- R/books.R | 10 ++++++-- R/footnotes.R | 11 ++++++--- R/full_text.R | 10 +++++--- R/helpers.R | 24 ++++++++++++++++++--- R/import_spec.R | 4 +-- R/references.R | 10 ++++++-- inst/doc/Introduction.html | 28 ++++++++++++++++++++++--- inst/doc/automating-file-import.html | 38 ++++++++++++++++++++++++++-------- inst/doc/known-quirks.html | 28 ++++++++++++++++++++++--- tests/testthat/test-helpers.R | 5 ++++ tests/testthat/test-re-import.R | 4 +-- tests/testthat/test-writing-to-file.R | 11 ++++++--- 17 files changed, 190 insertions(+), 67 deletions(-)
Title: A 'Java' Platform Integration for 'R' with Programming Languages
'Groovy', 'JavaScript', 'JRuby' ('Ruby'), 'Jython' ('Python'),
and 'Kotlin'
Description: Provides a high-level integration for the 'Java' platform that makes 'Java' objects easy to use from within 'R'; provides a unified interface to integrate 'R' with several programming languages; and features extensive data exchange between 'R' and 'Java'. The 'jsr223'-supported programming languages include 'Groovy', 'JavaScript', 'JRuby' ('Ruby'), 'Jython' ('Python'), and 'Kotlin'. Any of these languages can use and extend 'Java' classes in natural syntax. Furthermore, solutions developed in any of the 'jsr223'-supported languages are also accessible to 'R' developers. The 'jsr223' package also features callbacks, script compiling, and string interpolation. In all, 'jsr223' significantly extends the computing capabilities of the 'R' software environment.
Author: Floid R. Gilbert [aut, cre],
David B. Dahl [aut]
Maintainer: Floid R. Gilbert <floid.r.gilbert@gmail.com>
Diff between jsr223 versions 0.3.2 dated 2018-04-30 and 0.3.3 dated 2018-12-12
jsr223-0.3.2/jsr223/tests/test-00-class-interfaces.R |only jsr223-0.3.2/jsr223/tests/test-01-data-exchange.R |only jsr223-0.3.2/jsr223/tests/test-02-evaluation.R |only jsr223-0.3.2/jsr223/tests/utility.R |only jsr223-0.3.3/jsr223/DESCRIPTION | 8 jsr223-0.3.3/jsr223/MD5 | 19 - jsr223-0.3.3/jsr223/NEWS | 9 jsr223-0.3.3/jsr223/inst/doc/jsr223.Rnw | 349 +++++++++++++++---- jsr223-0.3.3/jsr223/inst/doc/jsr223.pdf |binary jsr223-0.3.3/jsr223/tests/test-00.R |only jsr223-0.3.3/jsr223/vignettes/jsr223.Rnw | 349 +++++++++++++++---- jsr223-0.3.3/jsr223/vignettes/jsr223.bib | 121 ++---- jsr223-0.3.3/jsr223/vignettes/scheme-jsr223.pdf |only jsr223-0.3.3/jsr223/vignettes/scheme-rjava.pdf |only 14 files changed, 627 insertions(+), 228 deletions(-)
Title: Tools for Healthcare Machine Learning
Description: A machine learning toolbox tailored to healthcare data.
Author: Levi Thatcher [aut],
Michael Levy [aut],
Mike Mastanduno [aut, cre],
Taylor Larsen [aut],
Taylor Miller [aut],
Rex Sumsion [aut]
Maintainer: Mike Mastanduno <michael.mastanduno@healthcatalyst.com>
Diff between healthcareai versions 2.2.0 dated 2018-09-01 and 2.3.0 dated 2018-12-12
DESCRIPTION | 35 ++++--- MD5 | 134 +++++++++++++++--------------- NAMESPACE | 21 ++++ NEWS.md | 47 ++++++++++ R/explore.R | 7 + R/globals.R | 2 R/hcai-impute.R | 131 +++++++++++++++++++++-------- R/impute.R | 22 ++-- R/interpret.R | 52 ++++++++++- R/machine_learn.R | 5 + R/missingness.R | 5 - R/model_list_generics.R | 3 R/plot_explore.R | 7 - R/plot_predictions.R | 31 ++++++ R/predict.R | 13 ++ R/predict_utils.R | 7 + R/prep_data.R | 116 +++++++++++++++++++++---- R/reexports.R |only R/save_load.R | 23 ++++- R/step_add_levels.R | 27 +++--- R/step_date_hcai.R | 43 +++++---- R/step_dummy_hcai.R |only R/step_hcai_missing.R | 41 +++++---- R/step_locfimpute.R |only R/train_models.R | 2 R/utilities.R | 16 +++ R/variable_importance.R | 5 - README.md | 25 ++--- man/add_best_levels.Rd | 4 man/as.model_list.Rd | 6 - man/control_chart.Rd | 5 - man/explore.Rd | 4 man/figures/README-plot_predictions-1.png |binary man/hcai_impute.Rd | 31 ++++-- man/impute.Rd | 20 ++-- man/machine_learn.Rd | 6 - man/missingness.Rd | 4 man/plot.explore_df.Rd | 13 +- man/plot.interpret.Rd | 4 man/plot.model_list.Rd | 4 man/plot.predicted_df.Rd | 17 ++- man/plot.variable_importance.Rd | 3 man/prep_data.Rd | 71 ++++++++++++--- man/reexports.Rd | 5 - man/save_models.Rd | 7 + man/step_add_levels.Rd | 5 - man/step_date_hcai.Rd | 11 +- man/step_dummy_hcai.Rd |only man/step_locfimpute.Rd |only man/step_missing.Rd | 11 ++ man/tune_models.Rd | 4 tests/testthat/Rplots.pdf |binary tests/testthat/test-PCA.R |only tests/testthat/test-explore.R | 9 +- tests/testthat/test-find_unique_columns.R | 2 tests/testthat/test-flash_models.R | 3 tests/testthat/test-hcai-impute.R | 117 ++++++++++++++++++++++---- tests/testthat/test-impute.r | 15 +-- tests/testthat/test-interpret.R | 103 ++++++++++++++++------- tests/testthat/test-machine_learn.R | 9 ++ tests/testthat/test-model_list.R | 24 +++++ tests/testthat/test-plot_predictions.R | 10 +- tests/testthat/test-predict.R | 55 ++++++++++++ tests/testthat/test-prep_data.R | 58 +++++++++++- tests/testthat/test-save_load.R | 42 ++++++++- tests/testthat/test-step-hcai-missing.R | 10 +- tests/testthat/test-step_add_levels.R | 8 - tests/testthat/test-step_date_hcai.R | 46 ++++++++-- tests/testthat/test-step_dummy_hcai.R |only tests/testthat/test-step_locfimpute.R |only tests/testthat/test-utilities.R | 15 +++ tests/testthat/test-variable_importance.R | 3 72 files changed, 1193 insertions(+), 391 deletions(-)
Title: Filtering Algorithms for the State Space Models on the Stiefel
Manifold
Description: Provides the filtering algorithms for the state space models on the Stiefel manifold as well as the corresponding sampling algorithms for uniform, vector Langevin-Bingham and matrix Langevin-Bingham distributions on the Stiefel manifold.
Author: Yukai Yang [aut, cre]
Maintainer: Yukai Yang <yukai.yang@statistik.uu.se>
Diff between SMFilter versions 1.0.2 dated 2018-12-03 and 1.0.3 dated 2018-12-12
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 6 ++++++ R/SMFilter.R | 2 +- R/utils.R | 2 +- inst/doc/readme.Rmd | 4 ++-- inst/doc/readme.html | 36 +++++++++++++++++++++++++++++------- man/SMFilter.Rd | 2 +- vignettes/readme.Rmd | 4 ++-- 9 files changed, 53 insertions(+), 25 deletions(-)
Title: Parallel Distance Matrix Computation using Multiple Threads
Description: A fast parallelized alternative to R's native 'dist' function to
calculate distance matrices for continuous, binary, and multi-dimensional
input matrices, which supports a broad variety of 41 predefined distance
functions from the 'stats', 'proxy' and 'dtw' R packages, as well as user-
defined functions written in C++. For ease of use, the 'parDist' function
extends the signature of the 'dist' function and uses the same parameter
naming conventions as distance methods of existing R packages. The package
is mainly implemented in C++ and leverages the 'RcppParallel' package to
parallelize the distance computations with the help of the 'TinyThread'
library. Furthermore, the 'Armadillo' linear algebra library is used for
optimized matrix operations during distance calculations. The curiously
recurring template pattern (CRTP) technique is applied to avoid virtual
functions, which improves the Dynamic Time Warping calculations while
the implementation stays flexible enough to support different DTW step
patterns and normalization methods.
Author: Alexander Eckert [aut, cre],
Lucas Godoy [ctb],
Srikanth KS [ctb]
Maintainer: Alexander Eckert <info@alexandereckert.com>
Diff between parallelDist versions 0.2.3 dated 2018-12-11 and 0.2.4 dated 2018-12-12
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- inst/NEWS.Rd | 5 +++++ inst/doc/parallelDist.pdf |binary src/DistanceBinary.h | 33 ++++++++++++++++++++------------- src/DistanceDTWGeneric.h | 2 +- src/DistanceDist.h | 17 +++++++++-------- src/StepPattern.h | 2 +- src/parallelDist.cpp | 2 +- 9 files changed, 48 insertions(+), 35 deletions(-)
Title: Tools for Distance Metrics
Description: Provides tools for constructing, manipulating and using distance metrics.
Author: Fredrik Savje [aut, cre]
Maintainer: Fredrik Savje <fredrik.savje@yale.edu>
Diff between distances versions 0.1.5 dated 2018-12-12 and 0.1.6 dated 2018-12-12
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 5 +++++ src/libann/Makefile | 2 +- 4 files changed, 13 insertions(+), 8 deletions(-)
Title: Read, Manipulate and Visualise Magnetic Resonance Images
Description: Functions for working with magnetic resonance images. Reading and
writing of popular file formats (DICOM, Analyze, NIfTI-1, NIfTI-2, MGH);
interactive and non-interactive visualisation; flexible image manipulation;
metadata and sparse image handling.
Author: Jon Clayden
Maintainer: Jon Clayden <code@clayden.org>
Diff between tractor.base versions 3.2.2 dated 2018-03-16 and 3.3.0 dated 2018-12-12
tractor.base-3.2.2/tractor.base/R/analyze.R |only tractor.base-3.2.2/tractor.base/R/xform.R |only tractor.base-3.3.0/tractor.base/DESCRIPTION | 21 tractor.base-3.3.0/tractor.base/MD5 | 80 - tractor.base-3.3.0/tractor.base/NAMESPACE | 9 tractor.base-3.3.0/tractor.base/R/00_constants.R | 12 tractor.base-3.3.0/tractor.base/R/08_sparse.R | 2 tractor.base-3.3.0/tractor.base/R/10_mri_image.R | 393 +++--- tractor.base-3.3.0/tractor.base/R/12_coerce.R | 62 tractor.base-3.3.0/tractor.base/R/15_dicom.R | 5 tractor.base-3.3.0/tractor.base/R/deprecated.R | 2 tractor.base-3.3.0/tractor.base/R/dicom_dir.R | 637 +++++----- tractor.base-3.3.0/tractor.base/R/files.R | 376 ++--- tractor.base-3.3.0/tractor.base/R/json.R |only tractor.base-3.3.0/tractor.base/R/mgh.R | 50 tractor.base-3.3.0/tractor.base/R/misc.R | 205 ++- tractor.base-3.3.0/tractor.base/R/nifti.R | 271 +--- tractor.base-3.3.0/tractor.base/R/vector.R | 2 tractor.base-3.3.0/tractor.base/R/viewer.R | 8 tractor.base-3.3.0/tractor.base/R/viz.R | 26 tractor.base-3.3.0/tractor.base/R/zzz.R | 8 tractor.base-3.3.0/tractor.base/inst/extdata |only tractor.base-3.3.0/tractor.base/man/MriImage-class.Rd | 10 tractor.base-3.3.0/tractor.base/man/allEqual.Rd | 12 tractor.base-3.3.0/tractor.base/man/embrace.Rd |only tractor.base-3.3.0/tractor.base/man/execute.Rd | 4 tractor.base-3.3.0/tractor.base/man/files.Rd | 32 tractor.base-3.3.0/tractor.base/man/infix.Rd |only tractor.base-3.3.0/tractor.base/man/mergeMriImages.Rd | 19 tractor.base-3.3.0/tractor.base/man/paths.Rd | 41 tractor.base-3.3.0/tractor.base/man/readDicomDirectory.Rd | 14 tractor.base-3.3.0/tractor.base/man/sortDicomDirectories.Rd | 9 tractor.base-3.3.0/tractor.base/man/tractor.base-deprecated.Rd | 8 tractor.base-3.3.0/tractor.base/man/viewer.Rd | 7 tractor.base-3.3.0/tractor.base/man/visualisation.Rd | 6 tractor.base-3.3.0/tractor.base/tests |only 36 files changed, 1223 insertions(+), 1108 deletions(-)
Title: Trace Plots, Density Plots and Chain Comparisons for MCMC
Samples
Description: Provides a function for examining posterior MCMC samples
from a single chain using trace plots and density plots, and from
multiple chains by comparing posterior medians and credible intervals
from each chain. These plotting functions have a variety of options,
such as figure sizes, legends, parameters to plot, and saving plots to file.
Functions interface with the NIMBLE software package, see
de Valpine, Turek, Paciorek, Anderson-Bergman, Temple Lang and Bodik (2017)
<doi:10.1080/10618600.2016.1172487>.
Author: Daniel Turek [aut, cre]
Maintainer: Daniel Turek <danielturek@gmail.com>
Diff between basicMCMCplots versions 0.1.1 dated 2018-11-29 and 0.1.2 dated 2018-12-12
DESCRIPTION | 6 +- MD5 | 11 ++--- NAMESPACE | 3 - R/plots.R | 112 +++++++++++++++++++++++++++++++++++++++++---------- man/chainsPlot.Rd | 27 +++--------- man/chainsSummary.Rd |only man/samplesPlot.Rd | 2 7 files changed, 112 insertions(+), 49 deletions(-)
More information about basicMCMCplots at CRAN
Permanent link
Title: Functions for the STARTS Model
Description: Contains functions for estimating the STARTS model of
Kenny and Zautra (1995, 2001) <DOI:10.1037/0022-006X.63.1.52>,
<DOI:10.1037/10409-008>. Penalized maximum likelihood
estimation and Markov Chain Monte Carlo estimation are
also provided, see Luedtke, Robitzsch and Wagner (2018)
<DOI:10.1037/met0000155>.
Author: Alexander Robitzsch [aut,cre], Oliver Luedtke [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between STARTS versions 0.5-28 dated 2018-11-12 and 1.0-6 dated 2018-12-12
DESCRIPTION | 8 +++---- MD5 | 18 ++++++++--------- R/RcppExports.R | 2 - R/starts_uni_estimate.R | 2 - R/starts_uni_estimate_variance_proportions_pml.R | 24 ++++++++++++----------- R/starts_uni_sim.R | 4 +-- build/partial.rdb |binary inst/NEWS | 11 +++++++++- man/starts_uni.Rd | 15 ++++++++------ src/RcppExports.cpp | 2 - 10 files changed, 50 insertions(+), 36 deletions(-)
Title: Bayesian Age-Period-Cohort Modeling and Prediction
Description: Bayesian Age-Period-Cohort Modeling and Prediction using efficient Markov Chain Monte Carlo Methods. This is the R version of the previous BAMP software as described in Volker Schmid and Leonhard Held (2007) <DOI:10.18637/jss.v021.i08> Bayesian Age-Period-Cohort Modeling and Prediction - BAMP, Journal of Statistical Software 21:8. This package includes checks of convergence using Gelman's R.
Author: Volker Schmid [aut, cre],
Florian Geressen [ctb],
Leonhard Held [ctb],
Evi Rainer [ctb]
Maintainer: Volker Schmid <volker.schmid@lmu.de>
Diff between bamp versions 2.0.4 dated 2018-11-30 and 2.0.5 dated 2018-12-12
DESCRIPTION | 8 - MD5 | 22 ++-- NEWS.md | 3 R/bamp.R | 1 README.md | 6 - inst/doc/bamp.html | 44 ++++++-- man/bamp.Rd | 1 src/bamp.cc | 10 - src/block.cc | 2 src/update_my.cc | 2 src/zufall.cc | 290 +---------------------------------------------------- src/zufall.h | 23 ++-- 12 files changed, 79 insertions(+), 333 deletions(-)
Title: Workspace Organization, Code and Documentation Editing, Package
Prep and Editing, Etc
Description: Hierarchical workspace tree, code editing and backup, easy package prep, editing of packages while loaded, per-object lazy-loading, easy documentation, macro functions, and miscellaneous utilities. Needed by debug package.
Author: Mark V. Bravington <mark.bravington@csiro.au>
Maintainer: Mark V. Bravington <mark.bravington@csiro.au>
Diff between mvbutils versions 2.7.4.1 dated 2013-04-17 and 2.8.232 dated 2018-12-12
DESCRIPTION | 23 INDEX | 115 MD5 | 75 NAMESPACE | 38 R/mvbutils.R | 4517 ++++++++++++++++++++++++++++++++------- R/sysdata.rda |only inst/changes.txt | 10 man/00mvbutils-package.Rd | 2 man/NEG.Rd |only man/cdfind.Rd | 6 man/check.patch.versions.Rd |only man/do.on.Rd |only man/doc2Rd.Rd | 17 man/fast.read.fwf.Rd | 6 man/fixr.Rd | 17 man/flatdoc.Rd | 21 man/foodweb.Rd | 30 man/generic.dll.loader.Rd |only man/help2flatdoc.Rd | 15 man/install.pkg.Rd | 56 man/library.dynam.reg.Rd |only man/local.on.exit.Rd | 3 man/maintain.packages.Rd | 3 man/make_dull.Rd |only man/max_pkg_ver.Rd |only man/mcut.Rd | 11 man/mlocal.Rd | 2 man/move.Rd | 8 man/multirep.Rd | 9 man/mvb.sys.parent.Rd | 3 man/mvbutils.operators.Rd | 30 man/mvbutils.packaging.tools.Rd | 34 man/mvbutils.utils.Rd | 38 man/my.index.Rd | 22 man/noice.Rd |only man/pre.install.Rd | 42 man/print.Rd | 34 man/rbdf.Rd | 179 - man/search.for.regexpr.Rd | 24 man/set.finalizer.Rd |only man/sleuth.Rd |only man/source.mvb.Rd | 3 man/unpackage.Rd | 6 man/write.sourceable.function.Rd | 4 44 files changed, 4313 insertions(+), 1090 deletions(-)
Title: Gene Set Enrichment Analysis via Integration of Metabolic
Networks and RNA-Seq Data
Description: Integrates metabolic networks and RNA-seq data to construct condition-specific series of metabolic sub-networks and applies to gene set enrichment analysis (Tran et al. (2018) <doi:10.1093/bioinformatics/bty929>).
Author: Van Du T. Tran [aut, cre], Marco Pagni [aut]
Maintainer: Van Du T. Tran <thuong.tran@sib.swiss>
Diff between metaboGSE versions 1.2.0 dated 2018-11-22 and 1.2.1 dated 2018-12-12
metaboGSE-1.2.0/metaboGSE/man/maxDist.Rd |only metaboGSE-1.2.1/metaboGSE/DESCRIPTION | 6 - metaboGSE-1.2.1/metaboGSE/MD5 | 19 +--- metaboGSE-1.2.1/metaboGSE/R/metaboGSE.R | 102 ++-------------------- metaboGSE-1.2.1/metaboGSE/R/rescue.R | 17 ++- metaboGSE-1.2.1/metaboGSE/R/submnet.R | 19 +++- metaboGSE-1.2.1/metaboGSE/inst/NEWS.Rd | 10 ++ metaboGSE-1.2.1/metaboGSE/inst/doc/metaboGSE.Rmd | 2 metaboGSE-1.2.1/metaboGSE/inst/doc/metaboGSE.pdf |binary metaboGSE-1.2.1/metaboGSE/man/scoreGeneDel.Rd | 5 - metaboGSE-1.2.1/metaboGSE/vignettes/metaboGSE.Rmd | 2 11 files changed, 67 insertions(+), 115 deletions(-)
Title: Fitting Generalized Linear Models Subject to Constraints
Description: Fits generalized linear models where the parameters are subject to linear constraints. The model is specified by giving a symbolic description of the linear predictor, a description of the error distribution, and a matrix of constraints on the parameters.
Author: Sanjay Chaudhuri [aut, cre],
Mark S. Handcock [aut],
Michael S. Rendall [ctb]
Maintainer: Sanjay Chaudhuri <sanjay@stat.nus.edu.sg>
Diff between glmc versions 0.2-4 dated 2012-12-04 and 0.3-1 dated 2018-12-12
DESCRIPTION | 35 +++++++++++++++-------------------- MD5 | 10 +++++----- NAMESPACE | 19 ++++++++++++++++++- R/glmc.stuff.r | 11 +++++------ data/flo.RData |binary man/glmc-package.Rd | 14 ++++++-------- 6 files changed, 49 insertions(+), 40 deletions(-)
Title: Spectral Processing for High Resolution Flow Infusion Mass
Spectrometry
Description: A spectral binning approach for high resolution flow infusion mass spectrometry data.
Author: Jasen Finch [aut, cre]
Maintainer: Jasen Finch <jsf9@aber.ac.uk>
Diff between binneR versions 1.1.1 dated 2018-03-01 and 2.0.5 dated 2018-12-12
DESCRIPTION | 33 +++++++++++++------ MD5 | 51 +++++++++++++++++++++++++++++- NAMESPACE | 65 +++++++++++++++++++++++++++++++++++++++ R/accurateData-method.R |only R/allClasses.R |only R/allGenerics.R |only R/binCentrality.R |only R/binParameters.R |only R/binPurity.R |only R/binneR.R |only R/binneRlyse.R |only R/binnedData-method.R |only R/calcBinList.R |only R/calcBinMeasures.R |only R/detectInfusionScans.R |only R/getHeaders.R |only R/getPeaks.R |only R/info-method.R |only R/plotBin.R |only R/plotChromatogram.R |only R/plotTIC.R |only R/show-method.R |only R/spectralBinning-method.R |only build |only inst/doc |only inst/sticker |only man/BinParameters-class.Rd |only man/Binalysis-class.Rd |only man/accurateData.Rd |only man/binParameters.Rd |only man/binneRlyse.Rd |only man/binnedData.Rd |only man/detectInfusionScans.Rd |only man/info.Rd |only man/plotBin.Rd |only man/plotChromFromFile.Rd |only man/plotChromatogram.Rd |only man/plotTIC.Rd |only man/show-BinParameters-method.Rd |only man/show-Binalysis-method.Rd |only tests |only vignettes |only 42 files changed, 137 insertions(+), 12 deletions(-)
Title: Generates Networks from BTS Data
Description: A flexible tool that allows generating bespoke
air transport statistics for urban studies based on publicly available
data from the Bureau of Transport Statistics (BTS) in the United States
<https://www.transtats.bts.gov/databases.asp?Mode_ID=1&Mode_Desc=Aviation&Subject_ID2=0>.
Author: Filipe Teixeira [aut, cre]
Maintainer: Filipe Teixeira <Filipe.MarquesTeixeira@Ugent.be>
Diff between skynet versions 1.2.2 dated 2018-06-28 and 1.3.0 dated 2018-12-12
DESCRIPTION | 12 +++++++----- MD5 | 22 +++++++++++++--------- NAMESPACE | 6 ++++++ NEWS.md | 12 ++++++++++++ R/PowerLaw.R | 8 ++++++-- R/download_db1b.R |only R/download_t100.R |only R/plotMap.R | 2 +- R/skynet.R | 5 +++-- README.md | 30 +++++++++++++++++++++++++++--- build/vignette.rds |binary inst/doc/skynet.html | 29 ++++++++++++++++------------- man/download_db1b.Rd |only man/download_t100.Rd |only 14 files changed, 91 insertions(+), 35 deletions(-)
Title: Headers for the 'xtensor' Library
Description: The 'xtensor' C++ library for numerical analysis with
multi-dimensional array expressions is provided as a header-only
C++14 library. It offers an extensible expression system enabling
lazy broadcasting; an API following the idioms of the C++ standard
library; and tools to manipulate array expressions and build upon 'xtensor'.
Author: Johan Mabille, Sylvain Corlay and Wolf Vollprecht
Maintainer: Sylvain Corlay <sylvain.corlay@gmail.com>
Diff between xtensor versions 0.8.1-0 dated 2018-10-19 and 0.9.0-0 dated 2018-12-12
DESCRIPTION | 6 MD5 | 132 - inst/include/xtensor-r/rarray.hpp | 90 - inst/include/xtensor-r/rcontainer.hpp | 151 + inst/include/xtensor-r/rcpp_extensions.hpp |only inst/include/xtensor-r/rtensor.hpp | 70 inst/include/xtensor-r/xtensor_r_config.hpp | 8 inst/include/xtensor/xadapt.hpp | 31 inst/include/xtensor/xarray.hpp | 21 inst/include/xtensor/xbroadcast.hpp | 58 inst/include/xtensor/xbuilder.hpp | 22 inst/include/xtensor/xcontainer.hpp | 32 inst/include/xtensor/xdynamic_view.hpp | 86 - inst/include/xtensor/xeval.hpp | 1 inst/include/xtensor/xexpression.hpp | 115 + inst/include/xtensor/xfixed.hpp | 3 inst/include/xtensor/xfunction.hpp | 300 +-- inst/include/xtensor/xfunctor_view.hpp | 66 inst/include/xtensor/xgenerator.hpp | 55 inst/include/xtensor/xhistogram.hpp | 140 + inst/include/xtensor/xindex_view.hpp | 73 inst/include/xtensor/xio.hpp | 511 +----- inst/include/xtensor/xiterator.hpp | 121 - inst/include/xtensor/xjson.hpp | 2 inst/include/xtensor/xlayout.hpp | 19 inst/include/xtensor/xmanipulation.hpp | 12 inst/include/xtensor/xmath.hpp | 175 ++ inst/include/xtensor/xmime.hpp |only inst/include/xtensor/xnorm.hpp | 38 inst/include/xtensor/xoperation.hpp | 52 inst/include/xtensor/xoptional.hpp | 1121 +++++++++++--- inst/include/xtensor/xoptional_assembly.hpp | 70 inst/include/xtensor/xoptional_assembly_base.hpp | 72 inst/include/xtensor/xoptional_assembly_storage.hpp | 46 inst/include/xtensor/xreducer.hpp | 77 inst/include/xtensor/xscalar.hpp | 55 inst/include/xtensor/xshape.hpp | 17 inst/include/xtensor/xslice.hpp | 14 inst/include/xtensor/xsort.hpp | 3 inst/include/xtensor/xstorage.hpp | 3 inst/include/xtensor/xstrided_view.hpp | 92 - inst/include/xtensor/xstrided_view_base.hpp | 10 inst/include/xtensor/xstrides.hpp | 35 inst/include/xtensor/xtensor.hpp | 57 inst/include/xtensor/xtensor_config.hpp | 6 inst/include/xtensor/xtensor_forward.hpp | 53 inst/include/xtensor/xtensor_simd.hpp | 1 inst/include/xtensor/xview.hpp | 194 +- inst/include/xtl/xbase64.hpp | 3 inst/include/xtl/xbasic_fixed_string.hpp | 1394 +++++++++--------- inst/include/xtl/xclosure.hpp | 51 inst/include/xtl/xdynamic_bitset.hpp | 812 ++++++---- inst/include/xtl/xhash.hpp | 8 inst/include/xtl/xiterator_base.hpp | 38 inst/include/xtl/xjson.hpp | 46 inst/include/xtl/xmeta_utils.hpp | 51 inst/include/xtl/xoptional.hpp | 11 inst/include/xtl/xsequence.hpp | 65 inst/include/xtl/xspan.hpp |only inst/include/xtl/xspan_impl.hpp |only inst/include/xtl/xtl_config.hpp | 4 inst/include/xtl/xvariant.hpp | 81 - inst/lib/cmake/xtensor-r/xtensor-rConfigVersion.cmake | 2 inst/lib/cmake/xtensor/xtensorConfig.cmake | 10 inst/lib/cmake/xtensor/xtensorConfigVersion.cmake | 2 inst/lib/cmake/xtl/xtlConfigVersion.cmake | 2 inst/lib/pkgconfig/xtensor.pc | 2 inst/lib/pkgconfig/xtl.pc | 2 src/xtensor_r_example.cpp | 1 69 files changed, 4275 insertions(+), 2626 deletions(-)
Title: Tidy Temporal Data Frames and Tools
Description: Provides a 'tbl_ts' class (the 'tsibble') to store
and manage temporal data in a data-centric format, which is built on
top of the 'tibble'. The 'tsibble' aims at easily manipulating and
analysing temporal data, including counting and filling time gaps,
aggregate over calendar periods, performing rolling window
calculations, and etc.
Author: Earo Wang [aut, cre] (<https://orcid.org/0000-0001-6448-5260>),
Di Cook [aut, ths] (<https://orcid.org/0000-0002-3813-7155>),
Rob Hyndman [aut, ths] (<https://orcid.org/0000-0002-2140-5352>),
Mitchell O'Hara-Wild [ctb]
Maintainer: Earo Wang <earo.wang@gmail.com>
Diff between tsibble versions 0.6.1 dated 2018-12-05 and 0.6.2 dated 2018-12-12
tsibble-0.6.1/tsibble/tests/testthat/test-split.R |only tsibble-0.6.2/tsibble/DESCRIPTION | 24 +-- tsibble-0.6.2/tsibble/MD5 | 81 ++++++------ tsibble-0.6.2/tsibble/NAMESPACE | 8 - tsibble-0.6.2/tsibble/NEWS.md | 18 ++ tsibble-0.6.2/tsibble/R/RcppExports.R | 4 tsibble-0.6.2/tsibble/R/as-tsibble.R | 7 - tsibble-0.6.2/tsibble/R/deprecated.R | 56 -------- tsibble-0.6.2/tsibble/R/error.R | 10 - tsibble-0.6.2/tsibble/R/filter-index.R | 19 ++ tsibble-0.6.2/tsibble/R/gaps.R | 98 +++++++-------- tsibble-0.6.2/tsibble/R/slide.R | 83 +++++++++++- tsibble-0.6.2/tsibble/R/stretch.R | 45 ++++++ tsibble-0.6.2/tsibble/R/subset.R | 6 tsibble-0.6.2/tsibble/R/tile.R | 45 ++++++ tsibble-0.6.2/tsibble/README.md | 3 tsibble-0.6.2/tsibble/inst/WORDLIST | 3 tsibble-0.6.2/tsibble/inst/doc/faq.html | 24 +++ tsibble-0.6.2/tsibble/inst/doc/implicit-na.Rmd | 4 tsibble-0.6.2/tsibble/inst/doc/implicit-na.html | 28 +++- tsibble-0.6.2/tsibble/inst/doc/intro-tsibble.html | 24 +++ tsibble-0.6.2/tsibble/inst/doc/window.R | 8 + tsibble-0.6.2/tsibble/inst/doc/window.Rmd | 12 + tsibble-0.6.2/tsibble/inst/doc/window.html | 32 ++++ tsibble-0.6.2/tsibble/man/count-gaps.Rd | 2 tsibble-0.6.2/tsibble/man/deprecated.Rd | 28 ---- tsibble-0.6.2/tsibble/man/fill-gaps.Rd | 2 tsibble-0.6.2/tsibble/man/filter_index.Rd | 15 +- tsibble-0.6.2/tsibble/man/future-slide.Rd |only tsibble-0.6.2/tsibble/man/future-stretch.Rd |only tsibble-0.6.2/tsibble/man/future-tile.Rd |only tsibble-0.6.2/tsibble/man/has-gaps.Rd | 2 tsibble-0.6.2/tsibble/man/scan-gaps.Rd |only tsibble-0.6.2/tsibble/man/slide.Rd | 3 tsibble-0.6.2/tsibble/man/stretch.Rd | 1 tsibble-0.6.2/tsibble/man/tile.Rd | 1 tsibble-0.6.2/tsibble/man/time_in.Rd | 11 + tsibble-0.6.2/tsibble/src/RcppExports.cpp | 12 - tsibble-0.6.2/tsibble/src/utils.cpp | 32 ---- tsibble-0.6.2/tsibble/tests/testthat/test-filter-index.R | 6 tsibble-0.6.2/tsibble/tests/testthat/test-gaps.R | 2 tsibble-0.6.2/tsibble/tests/testthat/test-subset.R | 2 tsibble-0.6.2/tsibble/vignettes/implicit-na.Rmd | 4 tsibble-0.6.2/tsibble/vignettes/window.Rmd | 12 + 44 files changed, 489 insertions(+), 288 deletions(-)
Title: Distance Measures for Networks
Description: Network is a prevalent form of data structure in many fields. As an object of analysis, many distance or metric measures have been proposed to define the concept of similarity between two networks. We provide a number of distance measures for networks. See Jurman et al (2011) <doi:10.3233/978-1-60750-692-8-227> for an overview on spectral class of inter-graph distance measures.
Author: Kisung You [aut, cre] (<https://orcid.org/0000-0002-8584-459X>)
Maintainer: Kisung You <kyou@nd.edu>
Diff between NetworkDistance versions 0.3.0 dated 2018-10-05 and 0.3.1 dated 2018-12-12
DESCRIPTION | 13 +++++++----- MD5 | 33 ++++++++++++++++++++------------ NAMESPACE | 3 ++ NEWS.md |only R/NetworkDistance.R | 4 ++- R/graph20.R |only R/nd_csd.R | 53 +++++++++++++++++++++++++++++++++++----------------- R/nd_dsd.R | 1 R/nd_gdd.R | 4 +-- R/nd_him.R | 4 ++- R/zzz.R |only README.md |only build/partial.rdb |binary data |only inst/REFERENCES.bib | 2 + man/figures |only man/graph20.Rd |only man/nd_csd.Rd | 6 +++++ man/nd_gdd.Rd | 2 - man/nd_him.Rd | 2 + 20 files changed, 88 insertions(+), 39 deletions(-)
More information about NetworkDistance at CRAN
Permanent link
Title: Tools for Distance Metrics
Description: Provides tools for constructing, manipulating and using distance metrics.
Author: Fredrik Savje [aut, cre]
Maintainer: Fredrik Savje <fredrik.savje@yale.edu>
Diff between distances versions 0.1.4 dated 2018-08-15 and 0.1.5 dated 2018-12-12
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS.md | 5 +++++ R/methods.R | 6 ++---- man/max_distance_search.Rd | 3 ++- src/Makevars | 18 ++++++++---------- src/get_dists.c | 3 ++- src/libann/Makefile | 21 +++++++-------------- 8 files changed, 38 insertions(+), 42 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-19 1.0.0
Title: Rapid Deployment of Machine Learning Algorithms
Description: Supervised machine learning has an increasingly important role in data
analysis. This package introduces a framework for rapidly building and deploying
supervised machine learning in a high-throughput manner. This package provides a
user-friendly interface that empowers investigators to execute state-of-the-art
binary and multi-class classification, as well as regression, with minimal
programming experience necessary.
Author: Thomas Quinn [aut, cre],
Daniel Tylee [ctb],
Samuel Lee [ctb]
Maintainer: Thomas Quinn <contacttomquinn@gmail.com>
Diff between exprso versions 0.4.0 dated 2018-07-25 and 0.4.7 dated 2018-12-12
DESCRIPTION | 18 +++--- MD5 | 60 ++++++++++---------- NAMESPACE | 5 + NEWS.md | 45 +++++++++++++++ R/1.2-methods.R | 100 ++++++++++++++++++++++++++++++++-- R/1.3-exprso.R | 6 +- R/2-mod.R | 36 ++++++++++-- R/5.1-fs.R | 47 +++++++++++++++ R/5.2-build.R | 85 ++++++++++++++++++++++------ R/6.1-predict.R | 10 +++ R/6.2-calc.R | 4 + build/vignette.rds |binary inst/doc/a_introduction-vignette.html | 22 +++---- inst/doc/b_advanced-vignette.html | 96 ++++++++++++++++---------------- inst/doc/c_readme.Rmd | 8 -- inst/doc/c_readme.html | 12 +--- man/ExprsArray-class.Rd | 4 - man/ExprsEnsemble-class.Rd | 12 +++- man/ExprsModel-class.Rd | 8 ++ man/ExprsPipeline-class.Rd | 16 ++++- man/build.Rd | 2 man/buildLASSO.Rd |only man/compare.Rd | 3 - man/fsBalance.Rd |only man/getWeights.Rd |only man/mod.Rd | 2 man/modPermute.Rd |only man/modRatios.Rd | 10 ++- man/plMonteCarlo.Rd | 4 - man/splitStratify.Rd | 5 + tests/testthat/test-build.R | 28 +++++++++ tests/testthat/test-mod.R | 6 -- vignettes/c_readme.Rmd | 8 -- 33 files changed, 496 insertions(+), 166 deletions(-)
Title: Size-Constrained Clustering
Description: Provides wrappers for 'scclust', a C library for computationally efficient
size-constrained clustering with near-optimal performance.
See <https://github.com/fsavje/scclust> for more information.
Author: Fredrik Savje [aut, cre],
Michael Higgins [aut],
Jasjeet Sekhon [aut]
Maintainer: Fredrik Savje <fredrik.savje@yale.edu>
Diff between scclust versions 0.2.0 dated 2018-08-24 and 0.2.1 dated 2018-12-12
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 7 ++++++- src/Makevars | 17 +++++++---------- src/libscclust/Makefile | 23 ++++++++--------------- 5 files changed, 30 insertions(+), 35 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-04-02 1.1
2012-04-01 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-07-10 1.1
2017-07-08 1.0