Title: Functions for the STARTS Model
Description: Contains functions for estimating the STARTS model of
Kenny and Zautra (1995, 2001) <DOI:10.1037/0022-006X.63.1.52>,
<DOI:10.1037/10409-008>. Penalized maximum likelihood
estimation and Markov Chain Monte Carlo estimation are
also provided, see Luedtke, Robitzsch and Wagner (2018)
<DOI:10.1037/met0000155>.
Author: Alexander Robitzsch [aut,cre], Oliver Luedtke [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between STARTS versions 1.0-6 dated 2018-12-12 and 1.1-6 dated 2018-12-13
DESCRIPTION | 12 ++++++------ MD5 | 20 ++++++++++---------- NAMESPACE | 2 +- R/RcppExports.R | 2 +- R/starts_uni_estimate.R | 2 +- R/starts_uni_estimate_variance_proportions_pml.R | 14 +++----------- build/partial.rdb |binary inst/NEWS | 8 ++++++++ man/data.starts.Rd | 8 ++++---- man/starts_uni.Rd | 6 +++--- src/RcppExports.cpp | 2 +- 11 files changed, 38 insertions(+), 38 deletions(-)
Title: Statistical Inference for Partially Observed Markov Processes
Description: Tools for working with partially observed Markov process (POMP) models (also known as stochastic dynamical systems, hidden Markov models, and nonlinear, non-Gaussian, state-space models). The package provides facilities for implementing POMP models, simulating them, and fitting them to time series data by a variety of frequentist and Bayesian methods. It is also a versatile platform for implementation of inference methods for general POMP models.
Author: Aaron A. King [aut, cre],
Edward L. Ionides [aut],
Carles Breto [aut],
Stephen P. Ellner [ctb],
Matthew J. Ferrari [ctb],
Bruce E. Kendall [ctb],
Michael Lavine [ctb],
Dao Nguyen [ctb],
Daniel C. Reuman [ctb],
Helen Wearing [ctb],
Simon N. Wood [ctb],
Sebastian Funk [ctb],
Steven G. Johnson [ctb],
Eamon O'Dea [ctb]
Maintainer: Aaron A. King <kingaa@umich.edu>
Diff between pomp versions 1.18 dated 2018-07-09 and 1.19 dated 2018-12-13
pomp-1.18/pomp/src/blowfly.c |only pomp-1.18/pomp/src/ricker.c |only pomp-1.18/pomp/src/sir.c |only pomp-1.19/pomp/DESCRIPTION | 34 - pomp-1.19/pomp/MD5 | 125 ++-- pomp-1.19/pomp/NAMESPACE | 7 pomp-1.19/pomp/R/aaa.R | 8 pomp-1.19/pomp/R/abc.R | 533 +++++++++---------- pomp-1.19/pomp/R/bsmc.R | 2 pomp-1.19/pomp/R/builder.R | 477 ++++++++--------- pomp-1.19/pomp/R/dprocess_pomp.R | 6 pomp-1.19/pomp/R/generics.R | 3 pomp-1.19/pomp/R/load.R | 4 pomp-1.19/pomp/R/mif.R | 3 pomp-1.19/pomp/R/mif2.R | 563 ++++++++++---------- pomp-1.19/pomp/R/nlf_objfun.R | 114 ++-- pomp-1.19/pomp/R/pfilter.R | 145 ++--- pomp-1.19/pomp/R/plugins.R | 340 ++---------- pomp-1.19/pomp/R/pmcmc.R | 580 ++++++++++----------- pomp-1.19/pomp/R/pomp.R | 742 +++++++++++---------------- pomp-1.19/pomp/R/pomp_class.R | 204 +++---- pomp-1.19/pomp/R/pomp_fun.R | 265 ++++----- pomp-1.19/pomp/R/pomp_methods.R | 159 +++-- pomp-1.19/pomp/R/probe.R | 3 pomp-1.19/pomp/R/probe_match.R | 3 pomp-1.19/pomp/R/rprocess_pomp.R | 4 pomp-1.19/pomp/R/sannbox.R | 212 ++++--- pomp-1.19/pomp/R/show.R |only pomp-1.19/pomp/R/simulate_pomp.R | 42 - pomp-1.19/pomp/R/spect.R | 4 pomp-1.19/pomp/R/templates.R |only pomp-1.19/pomp/R/trajectory_pomp.R | 45 - pomp-1.19/pomp/build/partial.rdb |binary pomp-1.19/pomp/demo/logistic.R | 55 -- pomp-1.19/pomp/demo/rw2.R | 67 +- pomp-1.19/pomp/inst/NEWS | 76 ++ pomp-1.19/pomp/inst/NEWS.Rd | 33 + pomp-1.19/pomp/inst/doc/index.html | 27 pomp-1.19/pomp/inst/doc/index.md |only pomp-1.19/pomp/inst/examples/bbs.R | 124 ++-- pomp-1.19/pomp/inst/examples/blowflies.R | 149 +++-- pomp-1.19/pomp/inst/examples/euler.sir.R | 188 +++++- pomp-1.19/pomp/inst/examples/gillespie.sir.R | 136 +++- pomp-1.19/pomp/inst/examples/ou2.R | 46 - pomp-1.19/pomp/inst/examples/ricker.R | 58 +- pomp-1.19/pomp/inst/examples/rw2.R | 56 -- pomp-1.19/pomp/inst/include/pomp.h | 21 pomp-1.19/pomp/inst/include/pomp_defines.h |only pomp-1.19/pomp/man/hitch.Rd |only pomp-1.19/pomp/man/lowlevel.Rd | 16 pomp-1.19/pomp/man/pomp.Rd | 26 pomp-1.19/pomp/man/pomp_methods.Rd | 27 pomp-1.19/pomp/man/simulate_pomp.Rd | 10 pomp-1.19/pomp/man/traj_match.Rd | 2 pomp-1.19/pomp/src/dprocess.c | 254 +++++++-- pomp-1.19/pomp/src/euler.c | 215 ------- pomp-1.19/pomp/src/init.c | 16 pomp-1.19/pomp/src/lookup_table.c | 9 pomp-1.19/pomp/src/pfilter.c | 79 +- pomp-1.19/pomp/src/pomp.h | 21 pomp-1.19/pomp/src/pomp_defines.h |only pomp-1.19/pomp/src/pomp_fun.c | 17 pomp-1.19/pomp/src/pomp_internal.h | 270 --------- pomp-1.19/pomp/src/probe.c | 9 pomp-1.19/pomp/src/rprocess.c | 92 +-- pomp-1.19/pomp/src/skeleton.c | 26 pomp-1.19/pomp/src/trajectory.c | 24 pomp-1.19/pomp/src/userdata.c | 4 68 files changed, 3286 insertions(+), 3494 deletions(-)
Title: Regression with a Large Number of Potential Explanatory
Variables
Description: Software for performing the reduction, exploratory and model selection phases of the procedure proposed by Cox, D.R. and Battey, H.S. (2017) <doi:10.1073/pnas.1703764114> for sparse regression when the number of potential explanatory variables far exceeds the sample size. The software supports linear regression, likelihood-based fitting of generalized linear regression models and the proportional hazards model fitted by partial likelihood.
Author: H. H. Hoeltgebaum
Maintainer: H. H. Hoeltgebaum <hh3015@ic.ac.uk>
Diff between HCmodelSets versions 1.0.0 dated 2018-12-11 and 1.0.1 dated 2018-12-13
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/Exploratory.Phase.R | 2 +- man/DGP.Rd | 4 ++-- man/Reduction.Phase.Rd | 2 +- 5 files changed, 11 insertions(+), 11 deletions(-)
Title: Hierarchical Bayesian Modeling of Decision-Making Tasks
Description: Fit an array of decision-making tasks with computational models in
a hierarchical Bayesian framework. Can perform hierarchical Bayesian analysis of
various computational models with a single line of coding.
Author: Woo-Young Ahn [aut, cre],
Nate Haines [aut],
Lei Zhang [aut],
Harhim Park [ctb],
Jaeyeong Yang [ctb],
Jethro Lee [ctb]
Maintainer: Woo-Young Ahn <wooyoung.ahn@gmail.com>
Diff between hBayesDM versions 0.6.0 dated 2018-09-11 and 0.7.0 dated 2018-12-13
hBayesDM-0.6.0/hBayesDM/R/ra_prospect.r |only hBayesDM-0.6.0/hBayesDM/inst/NEWS |only hBayesDM-0.6.0/hBayesDM/inst/stan |only hBayesDM-0.7.0/hBayesDM/DESCRIPTION | 63 hBayesDM-0.7.0/hBayesDM/MD5 | 412 hBayesDM-0.7.0/hBayesDM/NAMESPACE | 9 hBayesDM-0.7.0/hBayesDM/NEWS.md |only hBayesDM-0.7.0/hBayesDM/R/HDIofMCMC.R | 36 hBayesDM-0.7.0/hBayesDM/R/bandit2arm_delta.R | 408 hBayesDM-0.7.0/hBayesDM/R/bandit4arm2_kalman_filter.R |only hBayesDM-0.7.0/hBayesDM/R/bandit4arm_4par.R | 427 - hBayesDM-0.7.0/hBayesDM/R/bandit4arm_lapse.R | 434 - hBayesDM-0.7.0/hBayesDM/R/bart_par4.R | 393 hBayesDM-0.7.0/hBayesDM/R/choiceRT_ddm.R | 439 - hBayesDM-0.7.0/hBayesDM/R/choiceRT_ddm_single.R | 395 hBayesDM-0.7.0/hBayesDM/R/choiceRT_lba.R | 292 hBayesDM-0.7.0/hBayesDM/R/choiceRT_lba_single.R | 293 hBayesDM-0.7.0/hBayesDM/R/cra_exp.R | 438 - hBayesDM-0.7.0/hBayesDM/R/cra_linear.R | 443 - hBayesDM-0.7.0/hBayesDM/R/dbdm_prob_weight.R |only hBayesDM-0.7.0/hBayesDM/R/dd_cs.R | 430 - hBayesDM-0.7.0/hBayesDM/R/dd_cs_single.R | 375 hBayesDM-0.7.0/hBayesDM/R/dd_exp.R | 424 - hBayesDM-0.7.0/hBayesDM/R/dd_hyperbolic.R | 421 - hBayesDM-0.7.0/hBayesDM/R/dd_hyperbolic_single.R | 364 hBayesDM-0.7.0/hBayesDM/R/extract_ic.R | 66 hBayesDM-0.7.0/hBayesDM/R/gng_m1.R | 452 - hBayesDM-0.7.0/hBayesDM/R/gng_m2.R | 460 - hBayesDM-0.7.0/hBayesDM/R/gng_m3.R | 471 - hBayesDM-0.7.0/hBayesDM/R/gng_m4.R | 474 - hBayesDM-0.7.0/hBayesDM/R/hBayesDM.R | 11 hBayesDM-0.7.0/hBayesDM/R/hBayesDM_model.R |only hBayesDM-0.7.0/hBayesDM/R/igt_orl.R | 430 - hBayesDM-0.7.0/hBayesDM/R/igt_pvl_decay.R | 427 - hBayesDM-0.7.0/hBayesDM/R/igt_pvl_delta.R | 425 - hBayesDM-0.7.0/hBayesDM/R/igt_vpp.R | 454 - hBayesDM-0.7.0/hBayesDM/R/multiplot.R | 24 hBayesDM-0.7.0/hBayesDM/R/peer_ocu.R | 456 - hBayesDM-0.7.0/hBayesDM/R/plot.hBayesDM.R | 55 hBayesDM-0.7.0/hBayesDM/R/plotDist.R | 44 hBayesDM-0.7.0/hBayesDM/R/plotHDI.R | 50 hBayesDM-0.7.0/hBayesDM/R/plotInd.R | 32 hBayesDM-0.7.0/hBayesDM/R/printFit.R | 65 hBayesDM-0.7.0/hBayesDM/R/prl_ewa.R | 407 hBayesDM-0.7.0/hBayesDM/R/prl_fictitious.R | 405 hBayesDM-0.7.0/hBayesDM/R/prl_fictitious_multipleB.R | 421 - hBayesDM-0.7.0/hBayesDM/R/prl_fictitious_rp.R | 418 hBayesDM-0.7.0/hBayesDM/R/prl_fictitious_rp_woa.R | 428 - hBayesDM-0.7.0/hBayesDM/R/prl_fictitious_woa.R | 416 hBayesDM-0.7.0/hBayesDM/R/prl_rp.R | 404 hBayesDM-0.7.0/hBayesDM/R/prl_rp_multipleB.R | 434 - hBayesDM-0.7.0/hBayesDM/R/pst_gainloss_Q.R | 440 - hBayesDM-0.7.0/hBayesDM/R/ra_noLA.R | 416 hBayesDM-0.7.0/hBayesDM/R/ra_noRA.R | 420 - hBayesDM-0.7.0/hBayesDM/R/ra_prospect.R |only hBayesDM-0.7.0/hBayesDM/R/rdt_happiness.R | 468 - hBayesDM-0.7.0/hBayesDM/R/rhat.R | 30 hBayesDM-0.7.0/hBayesDM/R/settings.R |only hBayesDM-0.7.0/hBayesDM/R/stanmodels.R |only hBayesDM-0.7.0/hBayesDM/R/ts_par4.R | 431 - hBayesDM-0.7.0/hBayesDM/R/ts_par6.R | 439 - hBayesDM-0.7.0/hBayesDM/R/ts_par7.R | 446 - hBayesDM-0.7.0/hBayesDM/R/ug_bayes.R | 407 hBayesDM-0.7.0/hBayesDM/R/ug_delta.R | 408 hBayesDM-0.7.0/hBayesDM/R/wcs_sql.R | 449 - hBayesDM-0.7.0/hBayesDM/R/zzz.R | 20 hBayesDM-0.7.0/hBayesDM/inst/CITATION |only hBayesDM-0.7.0/hBayesDM/inst/extdata/bandit2arm_exampleData.txt | 4002 ++++----- hBayesDM-0.7.0/hBayesDM/inst/extdata/bandit4arm2_exampleData.txt |only hBayesDM-0.7.0/hBayesDM/inst/extdata/bandit4arm_exampleData.txt | 2002 ++++ hBayesDM-0.7.0/hBayesDM/inst/extdata/bart_exampleData.txt | 2 hBayesDM-0.7.0/hBayesDM/inst/extdata/choiceRT_exampleData.txt | 2 hBayesDM-0.7.0/hBayesDM/inst/extdata/choiceRT_single_exampleData.txt | 2 hBayesDM-0.7.0/hBayesDM/inst/extdata/cra_exampleData.txt | 1080 +- hBayesDM-0.7.0/hBayesDM/inst/extdata/dbdm_exampleData.txt |only hBayesDM-0.7.0/hBayesDM/inst/extdata/dd_exampleData.txt | 2162 +++++ hBayesDM-0.7.0/hBayesDM/inst/extdata/dd_single_exampleData.txt | 110 hBayesDM-0.7.0/hBayesDM/inst/extdata/gng_exampleData.txt | 2 hBayesDM-0.7.0/hBayesDM/inst/extdata/igt_exampleData.txt | 402 hBayesDM-0.7.0/hBayesDM/inst/extdata/peer_exampleData.txt | 722 - hBayesDM-0.7.0/hBayesDM/inst/extdata/prl_exampleData.txt | 4002 ++++----- hBayesDM-0.7.0/hBayesDM/inst/extdata/prl_multipleB_exampleData.txt | 1802 ++++ hBayesDM-0.7.0/hBayesDM/inst/extdata/pst_exampleData.txt | 2 hBayesDM-0.7.0/hBayesDM/inst/extdata/ra_data_attend.txt | 4193 +++++++++- hBayesDM-0.7.0/hBayesDM/inst/extdata/ra_data_reappraisal.txt | 4191 +++++++++ hBayesDM-0.7.0/hBayesDM/inst/extdata/ra_exampleData.txt | 702 + hBayesDM-0.7.0/hBayesDM/inst/extdata/rdt_exampleData.txt | 1802 ++-- hBayesDM-0.7.0/hBayesDM/inst/extdata/ts_exampleData.txt | 2192 +++++ hBayesDM-0.7.0/hBayesDM/inst/extdata/ug_exampleData.txt | 3602 ++++---- hBayesDM-0.7.0/hBayesDM/inst/extdata/wcs_exampleData.txt | 2 hBayesDM-0.7.0/hBayesDM/inst/include |only hBayesDM-0.7.0/hBayesDM/inst/plotting/plot_functions.R | 141 hBayesDM-0.7.0/hBayesDM/inst/stan_files |only hBayesDM-0.7.0/hBayesDM/man/bandit2arm_delta.Rd | 185 hBayesDM-0.7.0/hBayesDM/man/bandit4arm2_kalman_filter.Rd |only hBayesDM-0.7.0/hBayesDM/man/bandit4arm_4par.Rd | 175 hBayesDM-0.7.0/hBayesDM/man/bandit4arm_lapse.Rd | 175 hBayesDM-0.7.0/hBayesDM/man/bart_par4.Rd | 174 hBayesDM-0.7.0/hBayesDM/man/choiceRT_ddm.Rd | 190 hBayesDM-0.7.0/hBayesDM/man/choiceRT_ddm_single.Rd | 190 hBayesDM-0.7.0/hBayesDM/man/choiceRT_lba.Rd | 56 hBayesDM-0.7.0/hBayesDM/man/choiceRT_lba_single.Rd | 52 hBayesDM-0.7.0/hBayesDM/man/cra_exp.Rd | 179 hBayesDM-0.7.0/hBayesDM/man/cra_linear.Rd | 180 hBayesDM-0.7.0/hBayesDM/man/dbdm_prob_weight.Rd |only hBayesDM-0.7.0/hBayesDM/man/dd_cs.Rd | 182 hBayesDM-0.7.0/hBayesDM/man/dd_cs_single.Rd | 175 hBayesDM-0.7.0/hBayesDM/man/dd_exp.Rd | 179 hBayesDM-0.7.0/hBayesDM/man/dd_hyperbolic.Rd | 177 hBayesDM-0.7.0/hBayesDM/man/dd_hyperbolic_single.Rd | 172 hBayesDM-0.7.0/hBayesDM/man/extract_ic.Rd | 8 hBayesDM-0.7.0/hBayesDM/man/gng_m1.Rd | 176 hBayesDM-0.7.0/hBayesDM/man/gng_m2.Rd | 176 hBayesDM-0.7.0/hBayesDM/man/gng_m3.Rd | 178 hBayesDM-0.7.0/hBayesDM/man/gng_m4.Rd | 178 hBayesDM-0.7.0/hBayesDM/man/hBayesDM-package.Rd | 10 hBayesDM-0.7.0/hBayesDM/man/hBayesDM_model.Rd |only hBayesDM-0.7.0/hBayesDM/man/igt_orl.Rd | 179 hBayesDM-0.7.0/hBayesDM/man/igt_pvl_decay.Rd | 184 hBayesDM-0.7.0/hBayesDM/man/igt_pvl_delta.Rd | 182 hBayesDM-0.7.0/hBayesDM/man/igt_vpp.Rd | 181 hBayesDM-0.7.0/hBayesDM/man/peer_ocu.Rd | 186 hBayesDM-0.7.0/hBayesDM/man/plotDist.Rd | 5 hBayesDM-0.7.0/hBayesDM/man/plotHDI.Rd | 5 hBayesDM-0.7.0/hBayesDM/man/plotInd.Rd | 2 hBayesDM-0.7.0/hBayesDM/man/printFit.Rd | 18 hBayesDM-0.7.0/hBayesDM/man/prl_ewa.Rd | 177 hBayesDM-0.7.0/hBayesDM/man/prl_fictitious.Rd | 178 hBayesDM-0.7.0/hBayesDM/man/prl_fictitious_multipleB.Rd | 175 hBayesDM-0.7.0/hBayesDM/man/prl_fictitious_rp.Rd | 185 hBayesDM-0.7.0/hBayesDM/man/prl_fictitious_rp_woa.Rd | 185 hBayesDM-0.7.0/hBayesDM/man/prl_fictitious_woa.Rd | 178 hBayesDM-0.7.0/hBayesDM/man/prl_rp.Rd | 177 hBayesDM-0.7.0/hBayesDM/man/prl_rp_multipleB.Rd | 181 hBayesDM-0.7.0/hBayesDM/man/pst_gainloss_Q.Rd | 197 hBayesDM-0.7.0/hBayesDM/man/ra_noLA.Rd | 183 hBayesDM-0.7.0/hBayesDM/man/ra_noRA.Rd | 183 hBayesDM-0.7.0/hBayesDM/man/ra_prospect.Rd | 192 hBayesDM-0.7.0/hBayesDM/man/rdt_happiness.Rd | 182 hBayesDM-0.7.0/hBayesDM/man/rhat.Rd | 8 hBayesDM-0.7.0/hBayesDM/man/ts_par4.Rd | 185 hBayesDM-0.7.0/hBayesDM/man/ts_par6.Rd | 183 hBayesDM-0.7.0/hBayesDM/man/ts_par7.Rd | 183 hBayesDM-0.7.0/hBayesDM/man/ug_bayes.Rd | 177 hBayesDM-0.7.0/hBayesDM/man/ug_delta.Rd | 179 hBayesDM-0.7.0/hBayesDM/man/wcs_sql.Rd | 176 hBayesDM-0.7.0/hBayesDM/src |only hBayesDM-0.7.0/hBayesDM/tools |only 148 files changed, 33326 insertions(+), 25965 deletions(-)
Title: Lightning Fast Serialization of Data Frames for R
Description: Multithreaded serialization of compressed data frames using the
'fst' format. The 'fst' format allows for random access of stored data and
compression with the LZ4 and ZSTD compressors created by Yann Collet. The ZSTD
compression library is owned by Facebook Inc.
Author: Mark Klik [aut, cre, cph],
Yann Collet [ctb, cph] (Yann Collet is author of the bundled LZ4 and
ZSTD code and copyright holder of LZ4),
Facebook, Inc. [cph] (Bundled ZSTD code)
Maintainer: Mark Klik <markklik@gmail.com>
Diff between fst versions 0.8.8 dated 2018-06-07 and 0.8.10 dated 2018-12-13
fst-0.8.10/fst/DESCRIPTION | 10 fst-0.8.10/fst/MD5 | 120 fst-0.8.10/fst/R/RcppExports.R | 4 fst-0.8.10/fst/R/fst.R | 32 fst-0.8.10/fst/man/write_fst.Rd | 7 fst-0.8.10/fst/src/Makevars | 7 fst-0.8.10/fst/src/RcppExports.cpp | 10 fst-0.8.10/fst/src/flex_store.cpp | 6 fst-0.8.10/fst/src/flex_store.h | 3 fst-0.8.10/fst/src/fstcore/LZ4/CMakeLists.txt |only fst-0.8.10/fst/src/fstcore/LZ4/lz4.c | 178 - fst-0.8.10/fst/src/fstcore/LZ4/lz4.h | 128 fst-0.8.10/fst/src/fstcore/ZSTD/common/bitstream.h | 44 fst-0.8.10/fst/src/fstcore/ZSTD/common/compiler.h | 42 fst-0.8.10/fst/src/fstcore/ZSTD/common/cpu.h | 5 fst-0.8.10/fst/src/fstcore/ZSTD/common/debug.c |only fst-0.8.10/fst/src/fstcore/ZSTD/common/debug.h |only fst-0.8.10/fst/src/fstcore/ZSTD/common/entropy_common.c | 17 fst-0.8.10/fst/src/fstcore/ZSTD/common/fse.h | 86 fst-0.8.10/fst/src/fstcore/ZSTD/common/fse_decompress.c | 2 fst-0.8.10/fst/src/fstcore/ZSTD/common/huf.h | 61 fst-0.8.10/fst/src/fstcore/ZSTD/common/mem.h | 22 fst-0.8.10/fst/src/fstcore/ZSTD/common/pool.c | 121 fst-0.8.10/fst/src/fstcore/ZSTD/common/pool.h | 48 fst-0.8.10/fst/src/fstcore/ZSTD/common/xxhash.h |only fst-0.8.10/fst/src/fstcore/ZSTD/common/zstd_common.c | 5 fst-0.8.10/fst/src/fstcore/ZSTD/common/zstd_internal.h | 45 fst-0.8.10/fst/src/fstcore/ZSTD/compress/fse_compress.c | 292 -- fst-0.8.10/fst/src/fstcore/ZSTD/compress/hist.c |only fst-0.8.10/fst/src/fstcore/ZSTD/compress/hist.h |only fst-0.8.10/fst/src/fstcore/ZSTD/compress/huf_compress.c | 22 fst-0.8.10/fst/src/fstcore/ZSTD/compress/zstd_compress.c | 1409 +++++++--- fst-0.8.10/fst/src/fstcore/ZSTD/compress/zstd_compress_internal.h | 161 - fst-0.8.10/fst/src/fstcore/ZSTD/compress/zstd_double_fast.c | 360 +- fst-0.8.10/fst/src/fstcore/ZSTD/compress/zstd_double_fast.h | 10 fst-0.8.10/fst/src/fstcore/ZSTD/compress/zstd_fast.c | 270 + fst-0.8.10/fst/src/fstcore/ZSTD/compress/zstd_fast.h | 10 fst-0.8.10/fst/src/fstcore/ZSTD/compress/zstd_lazy.c | 527 ++- fst-0.8.10/fst/src/fstcore/ZSTD/compress/zstd_lazy.h | 33 fst-0.8.10/fst/src/fstcore/ZSTD/compress/zstd_ldm.c | 45 fst-0.8.10/fst/src/fstcore/ZSTD/compress/zstd_ldm.h | 4 fst-0.8.10/fst/src/fstcore/ZSTD/compress/zstd_opt.c | 823 +++-- fst-0.8.10/fst/src/fstcore/ZSTD/compress/zstd_opt.h | 20 fst-0.8.10/fst/src/fstcore/ZSTD/compress/zstdmt_compress.c | 302 +- fst-0.8.10/fst/src/fstcore/ZSTD/compress/zstdmt_compress.h | 32 fst-0.8.10/fst/src/fstcore/ZSTD/decompress/huf_decompress.c | 654 ++-- fst-0.8.10/fst/src/fstcore/ZSTD/decompress/zstd_decompress.c | 385 +- fst-0.8.10/fst/src/fstcore/ZSTD/dictBuilder/cover.c | 209 - fst-0.8.10/fst/src/fstcore/ZSTD/dictBuilder/cover.h |only fst-0.8.10/fst/src/fstcore/ZSTD/dictBuilder/divsufsort.c | 22 fst-0.8.10/fst/src/fstcore/ZSTD/dictBuilder/fastcover.c |only fst-0.8.10/fst/src/fstcore/ZSTD/dictBuilder/zdict.c | 75 fst-0.8.10/fst/src/fstcore/ZSTD/dictBuilder/zdict.h | 65 fst-0.8.10/fst/src/fstcore/ZSTD/zstd.h | 357 +- fst-0.8.10/fst/src/fstcore/interface/fst_db.h |only fst-0.8.10/fst/src/fstcore/interface/fstcompressor.h | 269 + fst-0.8.10/fst/src/fstcore/interface/fstdefines.h | 46 fst-0.8.10/fst/src/fstcore/interface/fsthash.h | 3 fst-0.8.10/fst/src/fstcore/interface/fststore.cpp | 2 fst-0.8.10/fst/src/init.c | 2 fst-0.8.10/fst/tests/testthat/FactorStore/data1.fst |binary fst-0.8.10/fst/tests/testthat/test_fst_table.R | 8 fst-0.8.8/fst/src/fstcore/ZSTD/compress/zstd_compress.h |only fst-0.8.8/fst/tests/testthat/1.fst |only fst-0.8.8/fst/tests/testthat/datasets/enc.fst |only fst-0.8.8/fst/tests/testthat/encoding.fst |only fst-0.8.8/fst/tests/testthat/some_fst_file.fst |only fst-0.8.8/fst/tests/testthat/testdata |only 68 files changed, 4726 insertions(+), 2694 deletions(-)
Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized
linear, and mixed models. Compute contrasts or linear functions of EMMs,
trends, and comparisons of slopes. Plots and compact letter displays.
Least-squares means are discussed, and the term "estimated marginal means"
is suggested, in Searle, Speed, and Milliken (1980) Population marginal means
in the linear model: An alternative to least squares means, The American
Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell Lenth [aut, cre, cph],
Henrik Singmann [ctb],
Jonathon Love [ctb],
Paul Buerkner [ctb],
Maxime Herve [ctb]
Maintainer: Russell Lenth <russell-lenth@uiowa.edu>
Diff between emmeans versions 1.3.0 dated 2018-10-26 and 1.3.1 dated 2018-12-13
DESCRIPTION | 11 +- MD5 | 138 +++++++++++++++++----------------- NEWS.md | 22 +++++ R/MCMC-support.R | 2 R/aovlist-support.R | 12 ++ R/cld-emm.R | 4 R/contrast.R | 24 ++++- R/emm-contr.R | 9 ++ R/emmGrid-methods.R | 18 +++- R/emmeans.R | 17 ++-- R/nested.R | 6 + R/plot.emm.R | 6 - R/ref-grid.R | 86 +++++++++++++-------- R/summary.R | 69 +++++++++++------ R/wrappers.R | 5 - inst/doc/FAQs.R | 5 + inst/doc/FAQs.Rmd | 79 ++++++++++++------- inst/doc/FAQs.html | 62 ++++++++++----- inst/doc/basics.Rmd | 3 inst/doc/basics.html | 18 +--- inst/doc/clean-simple.css | 1 inst/doc/comparisons.Rmd | 3 inst/doc/comparisons.html | 28 +++--- inst/doc/confidence-intervals.Rmd | 3 inst/doc/confidence-intervals.html | 30 +++---- inst/doc/interactions.R | 9 ++ inst/doc/interactions.Rmd | 55 ++++++++++--- inst/doc/interactions.html | 118 +++++++++++++++++------------ inst/doc/messy-data.Rmd | 3 inst/doc/messy-data.html | 38 ++++----- inst/doc/models.Rmd | 32 ++++--- inst/doc/models.html | 81 ++++++++++--------- inst/doc/sophisticated.Rmd | 3 inst/doc/sophisticated.html | 62 +++++++-------- inst/doc/transformations.Rmd | 3 inst/doc/transformations.html | 24 ++--- inst/doc/transition-from-lsmeans.Rmd | 3 inst/doc/transition-from-lsmeans.html | 6 - inst/doc/utilities.R | 10 ++ inst/doc/utilities.Rmd | 51 ++++++++++-- inst/doc/utilities.html | 84 ++++++++++++-------- inst/doc/vignette-topics.Rmd | 25 +++--- inst/doc/vignette-topics.html | 30 ++++--- inst/doc/xtending.Rmd | 3 inst/doc/xtending.html | 70 ++++++++--------- man/CLD.emmGrid.Rd | 1 man/contrast.Rd | 7 - man/emm_options.Rd | 7 + man/emmc-functions.Rd | 14 ++- man/emmeans.Rd | 8 - man/emmip.Rd | 4 man/plot.Rd | 8 + man/qdrg.Rd | 4 man/ref_grid.Rd | 17 +++- man/summary.emmGrid.Rd | 16 +-- man/wrappers.Rd | 7 + man/xtable.emmGrid.Rd | 7 - vignettes/FAQs.Rmd | 79 ++++++++++++------- vignettes/basics.Rmd | 3 vignettes/comparisons.Rmd | 3 vignettes/confidence-intervals.Rmd | 3 vignettes/interactions.Rmd | 55 ++++++++++--- vignettes/messy-data.Rmd | 3 vignettes/models.Rmd | 32 ++++--- vignettes/sophisticated.Rmd | 3 vignettes/transformations.Rmd | 3 vignettes/transition-from-lsmeans.Rmd | 3 vignettes/utilities.Rmd | 51 ++++++++++-- vignettes/vignette-topics.Rmd | 25 +++--- vignettes/xtending.Rmd | 3 70 files changed, 1083 insertions(+), 654 deletions(-)
Title: Dynamic Simulation and Testing for Single-Equation ARDL Models
Description: While autoregressive distributed lag (ARDL) models allow for extremely flexible dynamics, interpreting substantive significance of complex lag structures remains difficult. This package is designed to assist users in dynamically simulating and plotting the results of various ARDL models. It also contains post-estimation diagnostics, including a test for cointegration when estimating the error-correction variant of the autoregressive distributed lag model (Pesaran, Shin, and Smith 2001 <doi:10.1002/jae.616>).
Author: Soren Jordan [aut, cre, cph],
Andrew Q. Philips [aut]
Maintainer: Soren Jordan <sorenjordanpols@gmail.com>
Diff between dynamac versions 0.1.5 dated 2018-12-08 and 0.1.6 dated 2018-12-13
DESCRIPTION | 6 - MD5 | 13 +- NAMESPACE | 1 R/dynamac.R | 227 +++++++++++++++++++++++++++++++++++------ inst/doc/dynamac-vignette.html | 191 ++++++++++++++++++++-------------- inst/dynamac-manual.pdf |binary man/summary.dynardl.Rd |only vignettes/timeseriesrj.bib | 8 - 8 files changed, 326 insertions(+), 120 deletions(-)
Title: Multiscale Bernstein Polynomials for Densities
Description: Performs Bayesian nonparametric multiscale density estimation and multiscale testing of group differences with multiscale Bernstein polynomials (msBP) mixtures as in Canale and Dunson (2016).
Author: Antonio Canale
Maintainer: Antonio Canale <canale@stat.unipd.it>
Diff between msBP versions 1.3-1 dated 2017-09-04 and 1.4 dated 2018-12-13
ChangeLog | 3 ++- DESCRIPTION | 10 ++++++---- MD5 | 23 +++++++++++++++++++---- build |only inst/doc |only src/auxGibbs.cpp | 3 --- src/gibbs.cpp | 3 --- vignettes |only 8 files changed, 27 insertions(+), 15 deletions(-)
Title: Hierarchical Multiple Imputation
Description: Runs single level and multilevel imputation models. The user just has to pass the data to the main function and, optionally, his analysis model. Basically the package then translates this analysis model into commands to impute the data according to it with functions from 'mice', 'MCMCglmm' or routines build for this package.
Author: Matthias Speidel [aut, cre] (Institute for Employment Research,
Nuremberg, Germany),
Joerg Drechsler [aut] (Institute for Employment Research, Nuremberg,
Germany),
Shahab Jolani [aut] (Maastricht University, Maastricht, The
Netherlands)
Maintainer: Matthias Speidel <matthias.speidel@googlemail.com>
Diff between hmi versions 0.9.13 dated 2018-06-01 and 0.9.15 dated 2018-12-13
hmi-0.9.13/hmi/R/hmi_cycle_2018-05-31.R |only hmi-0.9.13/hmi/R/hmi_imp_binary_multi_2018-04-17.R |only hmi-0.9.13/hmi/R/hmi_imp_binary_single_2018-04-17.R |only hmi-0.9.13/hmi/R/hmi_imp_cat_multi_2018-04-17.R |only hmi-0.9.13/hmi/R/hmi_imp_cat_single_2018-04-17.R |only hmi-0.9.13/hmi/R/hmi_imp_catordered_multi_2018-04-17.R |only hmi-0.9.13/hmi/R/hmi_imp_catordered_single_2018-04-17.R |only hmi-0.9.13/hmi/R/hmi_imp_cont_multi_2018-04-17.R |only hmi-0.9.13/hmi/R/hmi_imp_cont_single_2018-04-17.R |only hmi-0.9.13/hmi/R/hmi_imp_count_multi_2018-04-17.R |only hmi-0.9.13/hmi/R/hmi_imp_count_single_2018-04-17.R |only hmi-0.9.13/hmi/R/hmi_imp_interval_2018-05-03.R |only hmi-0.9.13/hmi/R/hmi_imp_roundedcont_2018-05-11.R |only hmi-0.9.13/hmi/R/hmi_imp_semicont_multi_2018_04-17.R |only hmi-0.9.13/hmi/R/hmi_imp_semicont_single_2018-04-17.R |only hmi-0.9.13/hmi/R/hmi_smallfunctions_2018-05-31.R |only hmi-0.9.13/hmi/R/hmi_wrapper_2018-05-28.R |only hmi-0.9.13/hmi/inst/doc/my-vignette.R |only hmi-0.9.13/hmi/inst/doc/my-vignette.Rmd |only hmi-0.9.13/hmi/inst/doc/my-vignette.html |only hmi-0.9.13/hmi/man/center.interval.Rd |only hmi-0.9.13/hmi/man/head.Rd |only hmi-0.9.13/hmi/man/resetPar.Rd |only hmi-0.9.13/hmi/man/tail.Rd |only hmi-0.9.13/hmi/vignettes/my-vignette.Rmd |only hmi-0.9.15/hmi/DESCRIPTION | 16 - hmi-0.9.15/hmi/MD5 | 221 +++++++++------- hmi-0.9.15/hmi/NAMESPACE | 4 hmi-0.9.15/hmi/R/hmi_cycle.R |only hmi-0.9.15/hmi/R/hmi_imp_binary_multi.R |only hmi-0.9.15/hmi/R/hmi_imp_binary_single.R |only hmi-0.9.15/hmi/R/hmi_imp_cat_multi.R |only hmi-0.9.15/hmi/R/hmi_imp_cat_single.R |only hmi-0.9.15/hmi/R/hmi_imp_catordered_multi.R |only hmi-0.9.15/hmi/R/hmi_imp_catordered_single.R |only hmi-0.9.15/hmi/R/hmi_imp_cont_multi.R |only hmi-0.9.15/hmi/R/hmi_imp_cont_single.R |only hmi-0.9.15/hmi/R/hmi_imp_count_multi.R |only hmi-0.9.15/hmi/R/hmi_imp_count_single.R |only hmi-0.9.15/hmi/R/hmi_imp_interval.R |only hmi-0.9.15/hmi/R/hmi_imp_roundedcont.R |only hmi-0.9.15/hmi/R/hmi_imp_semicont_multi.R |only hmi-0.9.15/hmi/R/hmi_imp_semicont_single.R |only hmi-0.9.15/hmi/R/hmi_smallfunctions.R |only hmi-0.9.15/hmi/R/hmi_wrapper.R |only hmi-0.9.15/hmi/build/vignette.rds |binary hmi-0.9.15/hmi/inst/doc/myvignette.R |only hmi-0.9.15/hmi/inst/doc/myvignette.Rmd |only hmi-0.9.15/hmi/inst/doc/myvignette.html |only hmi-0.9.15/hmi/man/Mode.Rd | 2 hmi-0.9.15/hmi/man/as.data.frame.interval.Rd | 2 hmi-0.9.15/hmi/man/as.interval.Rd | 10 hmi-0.9.15/hmi/man/ceiling.Rd | 2 hmi-0.9.15/hmi/man/center_interval.Rd |only hmi-0.9.15/hmi/man/chaincheck.Rd | 8 hmi-0.9.15/hmi/man/cleanup.Rd | 2 hmi-0.9.15/hmi/man/contributions4intervals.Rd | 2 hmi-0.9.15/hmi/man/decompose_interval.Rd | 2 hmi-0.9.15/hmi/man/doubleintegral.Rd | 5 hmi-0.9.15/hmi/man/exp.Rd | 2 hmi-0.9.15/hmi/man/extract_varnames.Rd | 4 hmi-0.9.15/hmi/man/factors.Rd | 2 hmi-0.9.15/hmi/man/fixed_intercept_check.Rd | 2 hmi-0.9.15/hmi/man/floor.Rd | 2 hmi-0.9.15/hmi/man/generate_interval.Rd | 7 hmi-0.9.15/hmi/man/get_type.Rd | 9 hmi-0.9.15/hmi/man/head.interval.Rd |only hmi-0.9.15/hmi/man/hmi.Rd | 19 - hmi-0.9.15/hmi/man/hmi_pool.Rd | 4 hmi-0.9.15/hmi/man/idf2interval.Rd | 2 hmi-0.9.15/hmi/man/imp_binary_multi.Rd | 6 hmi-0.9.15/hmi/man/imp_binary_single.Rd | 2 hmi-0.9.15/hmi/man/imp_cat_multi.Rd | 2 hmi-0.9.15/hmi/man/imp_cat_single.Rd | 4 hmi-0.9.15/hmi/man/imp_cont_multi.Rd | 2 hmi-0.9.15/hmi/man/imp_cont_single.Rd | 2 hmi-0.9.15/hmi/man/imp_count_multi.Rd | 2 hmi-0.9.15/hmi/man/imp_count_single.Rd | 6 hmi-0.9.15/hmi/man/imp_interval.Rd | 2 hmi-0.9.15/hmi/man/imp_orderedcat_multi.Rd | 6 hmi-0.9.15/hmi/man/imp_orderedcat_single.Rd | 2 hmi-0.9.15/hmi/man/imp_roundedcont.Rd | 2 hmi-0.9.15/hmi/man/imp_semicont_multi.Rd | 6 hmi-0.9.15/hmi/man/imp_semicont_single.Rd | 5 hmi-0.9.15/hmi/man/imputationcycle.Rd | 12 hmi-0.9.15/hmi/man/interval-add.Rd | 2 hmi-0.9.15/hmi/man/interval-divide.Rd | 2 hmi-0.9.15/hmi/man/interval-modulo.Rd | 2 hmi-0.9.15/hmi/man/interval-multiply.Rd | 2 hmi-0.9.15/hmi/man/interval-power.Rd | 2 hmi-0.9.15/hmi/man/interval-subtract.Rd | 2 hmi-0.9.15/hmi/man/interval2idf.Rd | 2 hmi-0.9.15/hmi/man/is.na.interval.Rd | 2 hmi-0.9.15/hmi/man/is_interval.Rd | 2 hmi-0.9.15/hmi/man/list_of_rounding_degrees_maker.Rd | 2 hmi-0.9.15/hmi/man/list_of_rounding_formulas_maker.Rd | 2 hmi-0.9.15/hmi/man/list_of_spikes_maker.Rd | 4 hmi-0.9.15/hmi/man/list_of_types_maker.Rd | 2 hmi-0.9.15/hmi/man/log.Rd | 2 hmi-0.9.15/hmi/man/negloglik.Rd | 6 hmi-0.9.15/hmi/man/negloglik2_intervalsonly.Rd | 2 hmi-0.9.15/hmi/man/pbivnormX.Rd | 2 hmi-0.9.15/hmi/man/plot.interval.Rd | 8 hmi-0.9.15/hmi/man/random_intercept_check.Rd | 2 hmi-0.9.15/hmi/man/round.Rd | 2 hmi-0.9.15/hmi/man/sample_imp.Rd | 5 hmi-0.9.15/hmi/man/sampler.Rd | 2 hmi-0.9.15/hmi/man/sna_interval.Rd | 2 hmi-0.9.15/hmi/man/split_interval.Rd | 2 hmi-0.9.15/hmi/man/sqrt.Rd | 2 hmi-0.9.15/hmi/man/stand.Rd | 2 hmi-0.9.15/hmi/man/sub-.interval.Rd |only hmi-0.9.15/hmi/man/subset-.interval.Rd |only hmi-0.9.15/hmi/man/suggest_rounding_degrees.Rd | 4 hmi-0.9.15/hmi/man/table.Rd | 2 hmi-0.9.15/hmi/man/tail.interval.Rd |only hmi-0.9.15/hmi/tests |only hmi-0.9.15/hmi/vignettes/myvignette.Rmd |only 118 files changed, 256 insertions(+), 207 deletions(-)
Title: Nominal Dates, Times, and Durations
Description: Provides methods for working with nominal dates, times, and
durations. Base R has sophisticated facilities for handling time, but these
can give unexpected results if, for example, timezone is not handled properly.
This package provides a more casual approach to support cases which
do not require rigorous treatment. It systematically deconstructs the
concepts origin and timezone, and de-emphasizes the display of seconds. It
also converts among nominal durations such as seconds, hours, days, and weeks.
See '?datetime' and '?duration' for examples. Adapted from 'metrumrg'
<http://r-forge.r-project.org/R/?group_id=1215>.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between datetime versions 0.1.3 dated 2018-03-17 and 0.1.4 dated 2018-12-13
DESCRIPTION | 6 +++--- MD5 | 4 ++-- NAMESPACE | 3 +++ 3 files changed, 8 insertions(+), 5 deletions(-)
Title: Read Spectral and Logged Data from Foreign Files
Description: Functions for reading, and in some cases writing, foreign files
containing spectral data from spectrometers and their associated software,
output from daylight simulation models in common use, and some spectral
data repositories. As well as functions for exchange of spectral data with
other R packages. Part of the 'r4photobiology' suite,
Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] (<https://orcid.org/0000-0003-3385-972X>),
Titta K. Kotilainen [ctb] (<https://orcid.org/0000-0002-2822-9734>),
Glenn Davis [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyInOut versions 0.4.18 dated 2018-11-24 and 0.4.19 dated 2018-12-13
DESCRIPTION | 10 ++-- MD5 | 10 ++-- NEWS | 7 ++- R/read-tuv-file.r | 5 -- inst/doc/user-guide.html | 68 +++++++++++++++++++++----------- inst/extdata/tuv-azimuth-00-O3-300.html | 2 6 files changed, 64 insertions(+), 38 deletions(-)
More information about photobiologyInOut at CRAN
Permanent link
Title: Supports Developing, Building and Deploying R Solution
Description: Supports safe and reproducible solutions development in R.
It will help you with environment separation per project,
dependency management, local packages creation and preparing
deployment packs for your solutions.
Author: Walerian Sokolowski [aut, cre],
Wit Jakuczun [aut],
Yulia Yakimechko [aut],
Mateusz Kalinowski [aut],
Ryszard Szymanski [aut],
WLOG Solutions [cph],
R Consortium [ctb] (Definitions of system requirements are taken from
sysreqsdb project.)
Maintainer: Walerian Sokolowski <rsuite@wlogsolutions.com>
Diff between RSuite versions 0.33-246 dated 2018-09-25 and 0.34-248 dated 2018-12-13
DESCRIPTION | 11 MD5 | 72 +-- NAMESPACE | 7 NEWS.md | 11 R/00_init.R | 2 R/01_api_rsuite.R | 78 +++ R/08_api_tmpl.R | 29 - R/10_internal_env.R | 41 + R/12_build_install_prj_packages.R | 25 - R/14_setup_structure.R | 28 + R/15_zip_project.R | 121 +++-- R/16_srcrepo_build.R | 16 R/24_repo_adapter_mran.R | 25 - R/40_ci_adapter.R |only R/41_ci_adapter_jenkins.R |only R/50_pkg_deployment.R | 134 ++++-- R/52_dependencies.R | 15 R/54_pkg_document.R | 13 R/58_templates.R | 750 +++++++++++++++++----------------- R/60_versions.R | 4 R/98_shell.R | 59 +- R/packages_import.R | 1 inst/doc/RSuite-vignette.html | 128 ++--- inst/extdata/builtin_templates.zip |binary man/ci_adapter_create_base.Rd |only man/ci_adapter_get_version.Rd |only man/ci_adapter_is_building.Rd |only man/rsuite_check_version.Rd | 3 man/rsuite_getLogger.Rd | 3 man/rsuite_get_ci_adapter_names.Rd |only man/rsuite_get_os_info.Rd | 3 man/rsuite_get_rc_adapter_names.Rd | 3 man/rsuite_get_repo_adapter_names.Rd | 3 man/rsuite_register_ci_adapter.Rd |only man/rsuite_register_rc_adapter.Rd | 3 man/rsuite_register_repo_adapter.Rd | 8 man/rsuite_unregister_ci_adapter.Rd |only man/rsuite_unregister_rc_adapter.Rd | 3 man/rsuite_unregister_repo_adapter.Rd | 7 man/rsuite_update.Rd | 3 man/tmpl_register.Rd | 26 - 41 files changed, 1023 insertions(+), 612 deletions(-)
Title: Size-Constrained Clustering
Description: Provides wrappers for 'scclust', a C library for computationally efficient
size-constrained clustering with near-optimal performance.
See <https://github.com/fsavje/scclust> for more information.
Author: Fredrik Savje [aut, cre],
Michael Higgins [aut],
Jasjeet Sekhon [aut]
Maintainer: Fredrik Savje <fredrik.savje@yale.edu>
Diff between scclust versions 0.2.1 dated 2018-12-12 and 0.2.2 dated 2018-12-13
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 5 +++++ src/libscclust/Makefile | 4 ++-- 4 files changed, 14 insertions(+), 9 deletions(-)
Title: Bayesian LDA for Mixed-Membership Clustering Analysis
Description: Estimates the Bayesian LDA model for mixed-membership clustering based on different types of data
(i.e., Multinomial, Bernoulli, and Binomial entries). Albuquerque, Valle and Li (2019) <doi:10.1016/j.knosys.2018.10.024>.
Author: Pedro Albuquerque and Denis Valle and Daijiang Li
Maintainer: Pedro Albuquerque <pedroa@unb.br>
Diff between Rlda versions 0.2.5 dated 2018-07-13 and 0.2.6 dated 2018-12-13
DESCRIPTION | 11 ++++++----- MD5 | 10 +++++----- NAMESPACE | 1 + NEWS | 4 ++-- R/RcppExports.R | 20 ++++++++++---------- src/Makevars | 3 +-- 6 files changed, 25 insertions(+), 24 deletions(-)
Title: Partially Overlapping Samples Tests
Description: Tests for a comparison of two partially overlapping samples.
A comparison of means using the partially overlapping samples t-test:
See Derrick, Russ, Toher and White (2017), Test
statistics for the comparison of means for two samples which include
both paired observations and independent observations, Journal of
Modern Applied Statistical Methods, 16(1).
A comparison of proportions using the partially overlapping samples z-test:
See Derrick, Dobson-Mckittrick, Toher and White (2015), Test statistics
for comparing two proportions with partially overlapping samples.
Journal of Applied Quantitative Methods, 10(3).
Author: Ben Derrick
Maintainer: Ben Derrick <ben.derrick@uwe.ac.uk>
Diff between Partiallyoverlapping versions 1.1 dated 2018-12-10 and 2.0 dated 2018-12-13
DESCRIPTION | 26 ++++--- MD5 | 9 +- NAMESPACE | 1 R/Partiallyoverlapping.R | 157 ++++++++++++++++++++++++++++++++++++++++++++++- man/Partover.test.Rd | 11 ++- man/Prop.test.Rd |only 6 files changed, 184 insertions(+), 20 deletions(-)
More information about Partiallyoverlapping at CRAN
Permanent link
Title: Cognitive Diagnosis Modeling
Description: Functions for cognitive diagnosis modeling and multidimensional item response modeling
for dichotomous and polytomous item responses. This package enables the estimation of
the DINA and DINO model (Junker & Sijtsma, 2001, <doi:10.1177/01466210122032064>),
the multiple group (polytomous) GDINA model (de la Torre, 2011,
<doi:10.1007/s11336-011-9207-7>), the multiple choice DINA model (de la Torre, 2009,
<doi:10.1177/0146621608320523>), the general diagnostic model (GDM; von Davier, 2008,
<doi:10.1348/000711007X193957>), the structured latent class model (SLCA; Formann, 1992,
<doi:10.1080/01621459.1992.10475229>) and regularized latent class analysis
(Chen, Li, Liu, & Ying, 2017, <doi:10.1007/s11336-016-9545-6>).
See George, Robitzsch, Kiefer, Gross, and Uenlue (2017) <doi:10.18637/jss.v074.i02>
for further details on estimation and the package structure.
For tutorials on how to use the CDM package see
George and Robitzsch (2015) as well as
Ravand and Robitzsch (2015).
Author: Alexander Robitzsch [aut, cre], Thomas Kiefer [aut],
Ann Cathrice George [aut], Ali Uenlue [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between CDM versions 7.0-12 dated 2018-11-06 and 7.1-20 dated 2018-12-13
DESCRIPTION | 10 +-- MD5 | 64 ++++++++++----------- NAMESPACE | 3 R/RcppExports.R | 2 R/cdm_timecat.R |only R/check.input.R | 56 +++++++++--------- R/gdina_mstep_item_uls.R | 4 - R/gdm.R | 8 ++ R/gdm_calc_post.R | 2 R/gdm_progress_em_algorithm.R | 12 +-- R/numerical_Hessian.R | 11 ++- R/numerical_Hessian_partial.R | 8 +- R/numerical_gradient.R |only R/plot.gdina.R | 17 ++--- R/rrum.param.R | 4 - R/sim.gdina.R | 12 +-- R/skill.cor.R | 6 - R/zzz.R | 4 - build/partial.rdb |binary inst/NEWS | 12 +++ man/CDM-package.Rd | 13 ++-- man/cdm.est.class.accuracy.Rd | 12 ++- man/gdina.Rd | 8 +- man/gdm.Rd | 4 - man/numerical_Hessian.Rd | 11 ++- src/RcppExports.cpp | 2 src/cdm_rcpp_din_deterministic_devcrit.cpp | 10 +-- src/cdm_rcpp_gdd.cpp | 6 - src/cdm_rcpp_irt_predict.cpp | 4 - src/cdm_rcpp_kli.cpp | 6 - src/cdm_rcpp_mcdina_probs_multcat_items_counts.cpp | 2 src/cdm_rcpp_modelfit_cor.cpp | 4 - src/cdm_rcpp_slca.cpp | 4 - src/init.c | 2 34 files changed, 182 insertions(+), 141 deletions(-)
Title: Simultaneous Confidence Intervals for Ranks
Description: Algorithms to construct simultaneous confidence intervals for the ranks of means mu_1,...,mu_n based on an independent Gaussian sample using multiple testing techniques.
Author: Diaa Al Mohamad and Erik W. van Zwet and Jelle J. Goeman
Maintainer: Diaa Al Mohamad <diaa.almohamad@gmail.com>
Diff between ICRanks versions 1.3 dated 2017-11-21 and 2.0 dated 2018-12-13
DESCRIPTION | 12 MD5 | 14 NAMESPACE | 2 R/RcppExports.R | 8 R/ic.ranks.R | 585 ++++++++++++++++++++++++++++++++++------ man/ic.ranks.Rd | 40 +- src/PartitionByBlock.cpp | 686 ++++++++++++++++++++++++++++++++++++++--------- src/RcppExports.cpp | 26 - 8 files changed, 1118 insertions(+), 255 deletions(-)
Title: Produce Charts that you See on the Fingertips Website
Description: Use Fingertips charts to recreate the visualisations
that are displayed on the Fingertips website (<http://fingertips.phe.org.uk/>).
Author: Sebastian Fox [aut, cre]
Maintainer: Sebastian Fox <sebastian.fox@phe.gov.uk>
Diff between fingertipscharts versions 0.0.2 dated 2018-09-14 and 0.0.3 dated 2018-12-13
DESCRIPTION | 12 MD5 | 48 - NAMESPACE | 1 NEWS.md | 6 R/quick_charts.R | 40 - R/spine_chart_utils.R | 21 inst/doc/quick_charts.R | 14 inst/doc/quick_charts.Rmd | 16 inst/doc/quick_charts.html | 379 ++++++------- man/area_profiles.Rd | 30 - man/box_plots.Rd | 5 man/compare_areas.Rd | 1 man/compare_indicators.Rd | 1 man/map.Rd | 7 man/overview.Rd | 19 man/population.Rd | 5 man/spine_preprocess.Rd | 2 man/spine_rescaler.Rd | 4 man/trends.Rd | 1 tests/figs/area-profiles-example/area-profiles-example.svg | 68 +- tests/figs/deps.txt | 2 tests/figs/map-example/map-example.svg | 4 tests/figs/map/map.svg | 4 tests/testthat/test-examples.R | 14 vignettes/quick_charts.Rmd | 16 25 files changed, 337 insertions(+), 383 deletions(-)
More information about fingertipscharts at CRAN
Permanent link
Title: Crypto Currency Market Data
Description: Retrieves crypto currency current and historical information as well as information on the exchanges they are listed on. For current and historical it will retrieve the daily open, high, low and close values for all crypto currencies. This retrieves the historical market data by web scraping tables provided by 'Cryptocurrency Market Capitalizations' <https://coinmarketcap.com>.
Author: Jesse Vent [aut, cre]
Maintainer: Jesse Vent <cryptopackage@icloud.com>
Diff between crypto versions 1.0.3 dated 2018-09-20 and 1.1.0 dated 2018-12-13
crypto-1.0.3/crypto/R/crypto2xts.R |only crypto-1.0.3/crypto/R/crypto_markets.R |only crypto-1.0.3/crypto/R/encoding.R |only crypto-1.0.3/crypto/R/getCoins.R |only crypto-1.0.3/crypto/R/getExchanges.R |only crypto-1.0.3/crypto/R/getPrices.R |only crypto-1.0.3/crypto/R/global_markets.R |only crypto-1.0.3/crypto/R/listCoins.R |only crypto-1.0.3/crypto/inst |only crypto-1.0.3/crypto/man/crypto2xts.Rd |only crypto-1.0.3/crypto/man/daily_market.Rd |only crypto-1.0.3/crypto/man/getCoins.Rd |only crypto-1.0.3/crypto/man/getExchanges.Rd |only crypto-1.0.3/crypto/man/getPrices.Rd |only crypto-1.0.3/crypto/man/global_market.Rd |only crypto-1.0.3/crypto/man/listCoins.Rd |only crypto-1.0.3/crypto/man/repair_dependencies.Rd |only crypto-1.1.0/crypto/DESCRIPTION | 21 ++++---- crypto-1.1.0/crypto/MD5 | 53 +++++++++++---------- crypto-1.1.0/crypto/NAMESPACE | 47 ++++++++++++------- crypto-1.1.0/crypto/NEWS.md | 17 ++++++- crypto-1.1.0/crypto/R/crypto_exchanges.R |only crypto-1.1.0/crypto/R/crypto_global_markets.R |only crypto-1.1.0/crypto/R/crypto_helpers.R |only crypto-1.1.0/crypto/R/crypto_history.R |only crypto-1.1.0/crypto/R/crypto_list.R |only crypto-1.1.0/crypto/R/crypto_prices.R |only crypto-1.1.0/crypto/R/crypto_timeseries.R |only crypto-1.1.0/crypto/R/crypto_xts.R |only crypto-1.1.0/crypto/R/scraper.R | 58 ++++++++++++------------ crypto-1.1.0/crypto/R/sysdata.rda |only crypto-1.1.0/crypto/README.md | 26 +++++++--- crypto-1.1.0/crypto/man/cmc_api.Rd |only crypto-1.1.0/crypto/man/crypto_exchanges.Rd |only crypto-1.1.0/crypto/man/crypto_global_market.Rd |only crypto-1.1.0/crypto/man/crypto_history.Rd |only crypto-1.1.0/crypto/man/crypto_list.Rd |only crypto-1.1.0/crypto/man/crypto_prices.Rd |only crypto-1.1.0/crypto/man/crypto_timeseries.Rd |only crypto-1.1.0/crypto/man/crypto_xts.Rd |only crypto-1.1.0/crypto/man/get_coinlist_api.Rd |only crypto-1.1.0/crypto/man/get_coinlist_static.Rd |only crypto-1.1.0/crypto/man/install_keyring.Rd |only crypto-1.1.0/crypto/man/replace_encoding.Rd | 5 +- crypto-1.1.0/crypto/man/reset_encoding.Rd | 5 +- crypto-1.1.0/crypto/man/scraper.Rd | 14 +---- 46 files changed, 143 insertions(+), 103 deletions(-)
Title: Miscellaneous Esoteric Statistical Scripts
Description: A mixed collection of useful and semi-useful diverse
statistical functions, some of which may even be referenced in
The R Primer book.
Author: Claus Thorn Ekstrøm [aut, cre]
Maintainer: Claus Thorn Ekstrøm <claus@rprimer.dk>
Diff between MESS versions 0.5.3 dated 2018-11-23 and 0.5.4 dated 2018-12-13
DESCRIPTION | 10 +++++----- MD5 | 14 ++++++++------ NAMESPACE | 1 + R/RcppExports.R | 19 +++++++++++++++++++ R/power.t.test.R | 32 ++++++++++++++++++++++---------- man/add_torows.Rd |only man/power_t_test.Rd | 13 +++++++++++-- src/RcppExports.cpp | 13 +++++++++++++ src/addtorows.cpp |only 9 files changed, 79 insertions(+), 23 deletions(-)
Title: Linear Test Statistics for Permutation Inference
Description: Basic infrastructure for linear test statistics and permutation
inference in the framework of Strasser and Weber (1999) <http://epub.wu.ac.at/102/>.
This package must not be used by end-users. CRAN package 'coin' implements all
user interfaces and is ready to be used by anyone.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between libcoin versions 1.0-1 dated 2017-12-13 and 1.0-2 dated 2018-12-13
DESCRIPTION | 8 MD5 | 18 build/vignette.rds |binary inst/NEWS.Rd | 9 inst/doc/libcoin.Rnw | 2585 ++++++++++++++++++++++++----------------------- inst/doc/libcoin.pdf |binary src/libcoin.c | 135 +- tests/bugfixes.R | 9 tests/bugfixes.Rout.save | 17 vignettes/libcoin.Rnw | 2585 ++++++++++++++++++++++++----------------------- 10 files changed, 2801 insertions(+), 2565 deletions(-)
Title: C++ Header Files for Stan
Description: The C++ header files of the Stan project are provided by this package, but it contains no R code or function documentation. There is a shared object containing part of the 'CVODES' library, but it is not accessible from R. 'StanHeaders' is only useful for developers who want to utilize the 'LinkingTo' directive of their package's DESCRIPTION file to build on the Stan library without incurring unnecessary dependencies. The Stan project develops a probabilistic programming language that implements full or approximate Bayesian statistical inference via Markov Chain Monte Carlo or 'variational' methods and implements (optionally penalized) maximum likelihood estimation via optimization. The Stan library includes an advanced automatic differentiation scheme, 'templated' statistical and linear algebra functions that can handle the automatically 'differentiable' scalar types (and doubles, 'ints', etc.), and a parser for the Stan language. The 'rstan' package provides user-facing R functions to parse, compile, test, estimate, and analyze Stan models.
Author: Ben Goodrich [cre, aut],
Joshua Pritikin [ctb],
Andrew Gelman [aut],
Bob Carpenter [aut],
Matt Hoffman [aut],
Daniel Lee [aut],
Michael Betancourt [aut],
Marcus Brubaker [aut],
Jiqiang Guo [aut],
Peter Li [aut],
Allen Riddell [aut],
Marco Inacio [aut],
Mitzi Morris [aut],
Jeffrey Arnold [aut],
Rob Goedman [aut],
Brian Lau [aut],
Rob Trangucci [aut],
Jonah Gabry [aut],
Alp Kucukelbir [aut],
Robert Grant [aut],
Dustin Tran [aut],
Michael Malecki [aut],
Yuanjun Gao [aut],
Trustees of Columbia University [cph],
Lawrence Livermore National Security [cph] (CVODES),
The Regents of the University of California [cph] (CVODES),
Southern Methodist University [cph] (CVODES)
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Diff between StanHeaders versions 2.18.0 dated 2018-10-07 and 2.18.0-1 dated 2018-12-13
DESCRIPTION | 8 MD5 | 8 inst/doc/stanmath.html | 330 ++------------- inst/include/stan/math/prim/arr/functor/integrate_1d.hpp | 4 inst/include/stan/math/rev/arr/functor/integrate_1d.hpp | 4 5 files changed, 74 insertions(+), 280 deletions(-)
Title: Palettes Generated from All "Harry Potter" Movies
Description: Implementation of the characteristic palette of the houses of Hogwarts School of magic, present in all Harry Potter movies.
Author: Alejandro Jimenez Rico [aut, cre]
Maintainer: Alejandro Jimenez Rico <aljrico@gmail.com>
Diff between harrypotter versions 0.1.0 dated 2018-09-03 and 2.0.0 dated 2018-12-13
DESCRIPTION | 14 ++-- MD5 | 17 ++--- NAMESPACE | 21 +++--- R/hp_palette.R | 131 +++++++++++++++++----------------------- R/sysdata.rda |binary data/hp.map.rda |binary man/figures/hogwarts-scales.png |only man/hp.Rd | 18 ++--- man/hp.map.Rd | 4 - man/scale_hp.Rd | 23 ++++--- 10 files changed, 110 insertions(+), 118 deletions(-)
Title: General Purpose R Interface to 'Solr'
Description: Provides a set of functions for querying and parsing data
from 'Solr' (<http://lucene.apache.org/solr>) 'endpoints' (local and
remote), including search, 'faceting', 'highlighting', 'stats', and
'more like this'. In addition, some functionality is included for
creating, deleting, and updating documents in a 'Solr' 'database'.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between solrium versions 1.0.0 dated 2017-11-02 and 1.0.2 dated 2018-12-13
solrium-1.0.0/solrium/R/parsers.R |only solrium-1.0.2/solrium/DESCRIPTION | 16 solrium-1.0.2/solrium/LICENSE | 2 solrium-1.0.2/solrium/MD5 | 124 - solrium-1.0.2/solrium/NAMESPACE | 1 solrium-1.0.2/solrium/NEWS.md | 14 solrium-1.0.2/solrium/R/SolrClient.R | 84 - solrium-1.0.2/solrium/R/parsers.r |only solrium-1.0.2/solrium/R/solr_all.r | 11 solrium-1.0.2/solrium/R/solr_facet.r | 5 solrium-1.0.2/solrium/R/solr_group.r | 7 solrium-1.0.2/solrium/R/solr_highlight.r | 7 solrium-1.0.2/solrium/R/solr_json_request.R |only solrium-1.0.2/solrium/R/solr_mlt.r | 5 solrium-1.0.2/solrium/R/solr_search.r | 23 solrium-1.0.2/solrium/R/solr_stats.r | 4 solrium-1.0.2/solrium/R/zzz.r | 14 solrium-1.0.2/solrium/README.md | 295 ++-- solrium-1.0.2/solrium/build/vignette.rds |binary solrium-1.0.2/solrium/inst/doc/cores_collections.Rmd | 64 solrium-1.0.2/solrium/inst/doc/cores_collections.html | 62 solrium-1.0.2/solrium/inst/doc/document_management.Rmd | 102 - solrium-1.0.2/solrium/inst/doc/document_management.html | 102 - solrium-1.0.2/solrium/inst/doc/local_setup.Rmd | 36 solrium-1.0.2/solrium/inst/doc/local_setup.html | 33 solrium-1.0.2/solrium/inst/doc/search.Rmd | 663 ++++----- solrium-1.0.2/solrium/inst/doc/search.html | 667 ++++------ solrium-1.0.2/solrium/inst/examples/add_delete.xml | 1 solrium-1.0.2/solrium/inst/examples/books.xml | 4 solrium-1.0.2/solrium/man/SolrClient.Rd | 15 solrium-1.0.2/solrium/man/add.Rd | 4 solrium-1.0.2/solrium/man/collapse_pivot_names.Rd | 2 solrium-1.0.2/solrium/man/collection_addreplica.Rd | 6 solrium-1.0.2/solrium/man/collection_addreplicaprop.Rd | 5 solrium-1.0.2/solrium/man/collection_balanceshardunique.Rd | 4 solrium-1.0.2/solrium/man/collection_clusterstatus.Rd | 4 solrium-1.0.2/solrium/man/collection_create.Rd | 4 solrium-1.0.2/solrium/man/collection_createshard.Rd | 4 solrium-1.0.2/solrium/man/collection_migrate.Rd | 3 solrium-1.0.2/solrium/man/collection_splitshard.Rd | 4 solrium-1.0.2/solrium/man/core_create.Rd | 7 solrium-1.0.2/solrium/man/core_swap.Rd | 3 solrium-1.0.2/solrium/man/delete.Rd | 1 solrium-1.0.2/solrium/man/pivot_flatten_tabular.Rd | 2 solrium-1.0.2/solrium/man/solr_all.Rd | 62 solrium-1.0.2/solrium/man/solr_facet.Rd | 189 +- solrium-1.0.2/solrium/man/solr_group.Rd | 45 solrium-1.0.2/solrium/man/solr_highlight.Rd | 87 - solrium-1.0.2/solrium/man/solr_json_request.Rd |only solrium-1.0.2/solrium/man/solr_mlt.Rd | 43 solrium-1.0.2/solrium/man/solr_parse.Rd | 2 solrium-1.0.2/solrium/man/solr_search.Rd | 80 - solrium-1.0.2/solrium/man/solr_stats.Rd | 32 solrium-1.0.2/solrium/man/update_csv.Rd | 78 - solrium-1.0.2/solrium/man/update_json.Rd | 25 solrium-1.0.2/solrium/man/update_xml.Rd | 25 solrium-1.0.2/solrium/tests/testthat/helper-solrium.R | 3 solrium-1.0.2/solrium/tests/testthat/test-cursorMark.R |only solrium-1.0.2/solrium/tests/testthat/test-solr_all.R | 9 solrium-1.0.2/solrium/tests/testthat/test-solr_json_request.R |only solrium-1.0.2/solrium/tests/testthat/test-solr_search.r | 52 solrium-1.0.2/solrium/tests/testthat/test-update_csv.R | 3 solrium-1.0.2/solrium/vignettes/cores_collections.Rmd | 64 solrium-1.0.2/solrium/vignettes/document_management.Rmd | 102 - solrium-1.0.2/solrium/vignettes/local_setup.Rmd | 36 solrium-1.0.2/solrium/vignettes/search.Rmd | 663 ++++----- 66 files changed, 2059 insertions(+), 1955 deletions(-)
Title: API to Melbourne Pedestrian Data
Description: Provides API to Melbourne pedestrian data in tidy data form.
Author: Earo Wang [aut, cre] (<https://orcid.org/0000-0001-6448-5260>)
Maintainer: Earo Wang <earo.wang@gmail.com>
Diff between rwalkr versions 0.3.4 dated 2018-07-19 and 0.4.0 dated 2018-12-13
rwalkr-0.3.4/rwalkr/man/run_melb.Rd |only rwalkr-0.3.4/rwalkr/man/shine_melb.Rd |only rwalkr-0.3.4/rwalkr/man/walk_melb.Rd |only rwalkr-0.4.0/rwalkr/DESCRIPTION | 10 ++--- rwalkr-0.4.0/rwalkr/MD5 | 28 +++++++------- rwalkr-0.4.0/rwalkr/NAMESPACE | 3 + rwalkr-0.4.0/rwalkr/NEWS.md | 5 ++ rwalkr-0.4.0/rwalkr/R/deprecated.R |only rwalkr-0.4.0/rwalkr/R/scrape.R | 58 ++++++++++-------------------- rwalkr-0.4.0/rwalkr/R/shiny.R | 12 ++---- rwalkr-0.4.0/rwalkr/R/soda.R | 47 ++++++++++++------------ rwalkr-0.4.0/rwalkr/README.md | 48 +++++++++++------------- rwalkr-0.4.0/rwalkr/man/deprecated.Rd |only rwalkr-0.4.0/rwalkr/man/figure/plot-1.png |binary rwalkr-0.4.0/rwalkr/man/lookup_sensor.Rd | 10 ++--- rwalkr-0.4.0/rwalkr/man/melb_shine.Rd |only rwalkr-0.4.0/rwalkr/man/melb_walk.Rd |only rwalkr-0.4.0/rwalkr/man/melb_walk_fast.Rd |only rwalkr-0.4.0/rwalkr/man/pull_sensor.Rd | 4 +- 19 files changed, 105 insertions(+), 120 deletions(-)