Title: Interface to 'D3' Visualizations
Description: Suite of tools for using 'D3', a library for producing dynamic, interactive data
visualizations. Supports translating objects into 'D3' friendly data structures, rendering
'D3' scripts, publishing 'D3' visualizations, incorporating 'D3' in R Markdown, creating
interactive 'D3' applications with Shiny, and distributing 'D3' based 'htmlwidgets' in R
packages.
Author: Javier Luraschi [aut, cre],
JJ Allaire [aut],
Mike Bostock [ctb, cph] (d3.js library, http://d3js.org),
RStudio [cph]
Maintainer: Javier Luraschi <javier@rstudio.com>
Diff between r2d3 versions 0.2.2 dated 2018-05-30 and 0.2.3 dated 2018-12-18
DESCRIPTION | 6 MD5 | 22 - NEWS.md | 4 R/render.R | 5 build/vignette.rds |binary inst/doc/advanced_rendering.html | 350 ++++++++++++++++---------- inst/doc/data_conversion.html | 303 ++++++++++++++++------ inst/doc/dependencies.html | 367 +++++++++++++++++++-------- inst/doc/learning_d3.html | 316 +++++++++++++++-------- inst/doc/package_development.html | 428 +++++++++++++++++++++----------- inst/doc/visualization_options.html | 481 +++++++++++++++++++++++------------- tests/testthat/test-knit.R | 2 12 files changed, 1521 insertions(+), 763 deletions(-)
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Title: Discrete Bayesian Additive Regression Trees Sampler
Description: Fits Bayesian additive regression trees (BART; Chipman, George, and McCulloch (2010) <doi:10.1214/09-AOAS285>) while allowing the updating of predictors or response so that BART can be incorporated as a conditional model in a Gibbs/MH sampler. Also serves as a drop-in replacement for package 'BayesTree'.
Author: Vincent Dorie [aut, cre],
Hugh Chipman [aut],
Robert McCulloch [aut]
Maintainer: Vincent Dorie <vdorie@gmail.com>
Diff between dbarts versions 0.9-7 dated 2018-12-18 and 0.9-8 dated 2018-12-18
DESCRIPTION | 6 +- MD5 | 21 +++---- configure | 94 ++++++++++++++++++++++++++++++---- configure.ac | 5 + inst/NEWS.Rd | 3 - man/xbart.Rd | 8 +- src/R_interface_crossvalidate.cpp | 24 ++++++-- src/config.hpp.in | 6 ++ src/config.hpp.win | 5 + src/dbarts/config.hpp.win | 4 - src/external/config.h.win | 4 - tools/m4/ax_log1p_in_namespace_std.m4 |only 12 files changed, 139 insertions(+), 41 deletions(-)
Title: Integrated Taxonomic Information System Client
Description: An interface to the Integrated Taxonomic Information System ('ITIS')
(<https://www.itis.gov>). Includes functions to work with the 'ITIS' REST
API methods (<https://www.itis.gov/ws_description.html>), as well as the
'Solr' web service (<https://www.itis.gov/solr_documentation.html>).
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between ritis versions 0.7.2 dated 2018-05-20 and 0.7.6 dated 2018-12-18
DESCRIPTION | 19 +++--- MD5 | 52 +++++++++-------- NEWS.md | 15 +++++ R/itis_facet.R | 3 - R/itis_group.R | 3 - R/itis_highlight.R | 3 - R/itis_search.R | 4 + R/ritis-package.R | 25 +++++++- R/search_anymatch.R | 3 + R/solr.R | 3 + README.md | 113 ++++++++++++++++++++++++++++---------- build/vignette.rds |binary data |only inst/doc/ritis_vignette.Rmd | 78 ++++++++++++++------------ inst/doc/ritis_vignette.html | 78 ++++++++++++++------------ inst/vign/ritis_vignette.Rmd | 3 + inst/vign/ritis_vignette.md | 78 ++++++++++++++------------ man/itis_facet.Rd | 3 - man/itis_group.Rd | 3 - man/itis_highlight.Rd | 3 - man/itis_search.Rd | 6 +- man/ritis-package.Rd | 3 + man/search_any_match_paged.Rd | 4 - man/search_anymatch.Rd | 2 man/solr.Rd | 4 + man/solr_fields.Rd |only tests/testthat/test-itis_search.R | 6 -- vignettes/ritis_vignette.Rmd | 78 ++++++++++++++------------ 28 files changed, 370 insertions(+), 222 deletions(-)
Title: Doubly-Robust Nonparametric Estimation and Inference
Description: Targeted minimum loss-based estimators of counterfactual means and
causal effects that are doubly-robust with respect both to consistency and
asymptotic normality (Benkeser et al (2017), <doi:10.1093/biomet/asx053>; MJ
van der Laan (2014), <doi:10.1515/ijb-2012-0038>).
Author: David Benkeser [aut, cre, cph]
(<https://orcid.org/0000-0002-1019-8343>),
Nima Hejazi [ctb] (<https://orcid.org/0000-0002-7127-2789>)
Maintainer: David Benkeser <benkeser@emory.edu>
Diff between drtmle versions 1.0.3 dated 2018-07-02 and 1.0.4 dated 2018-12-18
drtmle-1.0.3/drtmle/R/method_fixes.R |only drtmle-1.0.3/drtmle/man/method.CC_LS_mod.Rd |only drtmle-1.0.3/drtmle/man/method.CC_nloglik_mod.Rd |only drtmle-1.0.4/drtmle/DESCRIPTION | 10 drtmle-1.0.4/drtmle/MD5 | 108 - drtmle-1.0.4/drtmle/NAMESPACE | 3 drtmle-1.0.4/drtmle/NEWS.md | 6 drtmle-1.0.4/drtmle/R/drtmle.R | 236 +- drtmle-1.0.4/drtmle/R/estimate.R | 20 drtmle-1.0.4/drtmle/R/fluctuate.R | 55 drtmle-1.0.4/drtmle/build/vignette.rds |binary drtmle-1.0.4/drtmle/inst/doc/using_drtmle.R | 119 + drtmle-1.0.4/drtmle/inst/doc/using_drtmle.Rmd | 157 + drtmle-1.0.4/drtmle/inst/doc/using_drtmle.html | 2085 ++++++++------------- drtmle-1.0.4/drtmle/man/SL.npreg.Rd | 4 drtmle-1.0.4/drtmle/man/adaptive_iptw.Rd | 12 drtmle-1.0.4/drtmle/man/drtmle.Rd | 20 drtmle-1.0.4/drtmle/man/fluctuateG.Rd | 2 drtmle-1.0.4/drtmle/man/fluctuateQ.Rd | 2 drtmle-1.0.4/drtmle/man/fluctuateQ1.Rd | 5 drtmle-1.0.4/drtmle/man/fluctuateQ2.Rd | 2 drtmle-1.0.4/drtmle/man/plot.drtmle.Rd | 3 drtmle-1.0.4/drtmle/man/wald_test.adaptive_iptw.Rd | 4 drtmle-1.0.4/drtmle/tests/testthat/test-drtmle.R | 105 + drtmle-1.0.4/drtmle/vignettes/refs.bib | 8 drtmle-1.0.4/drtmle/vignettes/using_drtmle.Rmd | 157 + drtmle-1.0.4/drtmle/vignettes/using_drtmle_cache |only 27 files changed, 1760 insertions(+), 1363 deletions(-)
Title: Data Analysis of Liquid-Liquid Systems
Description: Analyses experimental data from liquid-liquid phase diagrams and
provide a simple way to obtain its parameters, producing a simplified report. Designed
initially to analyse Aqueous Two-Phases Systems, the package will include (every
other update) new functions in order to comprise useful tools in liquid-liquid
analysis.
Author: Diego F Coelho <diegofcoelho@gmail.com> [aut, cre], Pedro V O Menezes <pedrod841@hotmail.com> [dtc], Carla Corina <carlacorina@hotmail.com.br> [dtc], Jon G Huddleston <Jonathan.Huddleston@brunel.ac.uk> [rev]
Maintainer: Diego F Coelho <diegofcoelho@gmail.com>
Diff between LLSR versions 0.0.2.4 dated 2018-12-05 and 0.0.2.5 dated 2018-12-18
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- R/AQSys.mrgsn.R | 41 +++++++++++++++++++++++------------------ R/AQSysDB.R | 11 ++++++++++- R/AQSysEval.R | 12 ++++++------ R/AQSysUtils.R | 15 ++++++++++++--- R/LLSRUtils.R | 4 ++-- data/llsr_data.rda |binary man/AQSysBancroft.Rd | 2 +- man/AQSysOthmer.Rd | 4 ++-- 10 files changed, 70 insertions(+), 47 deletions(-)
Title: Statistical Methods for Phenology Analysis in Temperate Fruit
Trees
Description: The phenology of plants (i.e. the timing of their annual life
phases) depends on climatic cues. For temperate trees and many other plants,
spring phases, such as leaf emergence and flowering, have been found to result
from the effects of both cool (chilling) conditions and heat. Fruit tree
scientists (pomologists) have developed some metrics to quantify chilling
and heat (e.g. see Luedeling (2012) <doi.org/10.1016/j.scienta.2012.07.011>).
'chillR' contains functions for processing temperature records into
chilling (Chilling Hours, Utah Chill Units and Chill Portions) and heat units
(Growing Degree Hours). Regarding chilling metrics, Chill Portions are often
considered the most promising, but they are difficult to calculate. This package
makes it easy. 'chillR' also contains procedures for conducting a PLS analysis
relating phenological dates (e.g. bloom dates) to either mean temperatures or
mean chill and heat accumulation rates, based on long-term weather and phenology
records (Luedeling and Gassner (2012) <doi.org/10.1016/j.agrformet.2011.10.020>).
As of version 0.65, it also includes functions for generating weather
scenarios with a weather generator, for conducting climate change analyses
for temperature-based climatic metrics and for plotting results from such
analyses. Since version 0.70, 'chillR' contains a function for interpolating
hourly temperature records.
Author: Eike Luedeling
Maintainer: Eike Luedeling <eike@eikeluedeling.com>
Diff between chillR versions 0.70.6 dated 2018-06-29 and 0.70.12 dated 2018-12-18
DESCRIPTION | 10 +-- MD5 | 84 ++++++++++++++------------- NAMESPACE | 2 R/daylength.R | 47 ++++++++------- R/handle_ucipm.R | 6 + R/make_hourly_temps.R | 66 ++++++++++++--------- R/runn_mean.R | 77 ++++++++++++++++++++++++- R/save_temperature_scenarios.R | 59 +++++++++++++++++++ R/tempResponse.R | 14 ++-- R/temperature_scenario_from_records.R | 32 ++++++++-- R/weather2chillR.R | 8 +- build/vignette.rds |binary inst/doc/hourly_temperatures.html | 94 +++++++++++++++---------------- man/PLS_chill_force.Rd | 9 +- man/PLS_pheno.Rd | 3 man/bloom_prediction.Rd | 3 man/bloom_prediction2.Rd | 6 - man/bloom_prediction3.Rd | 8 +- man/check_temperature_record.Rd | 4 - man/daylength.Rd | 11 ++- man/extract_temperatures_from_grids.Rd | 6 - man/filter_temperatures.Rd | 7 +- man/handle_chile_agromet.Rd | 4 - man/handle_cimis.Rd | 4 - man/handle_gsod.Rd | 4 - man/handle_ucipm.Rd | 6 + man/handle_wunderground.Rd | 4 - man/load_ClimateWizard_scenarios.Rd |only man/make_climate_scenario_from_files.Rd | 5 - man/make_daily_chill_figures.Rd | 5 - man/make_daily_chill_plot.Rd | 7 +- man/make_hourly_temps.Rd | 5 + man/make_multi_pheno_trend_plot.Rd | 5 - man/make_pheno_trend_plot.Rd | 6 - man/patch_daily_temperatures.Rd | 4 - man/plot_climate_scenarios.Rd | 6 - man/runn_mean.Rd | 4 - man/runn_mean_pred.Rd |only man/step_model.Rd | 6 - man/tempResponse.Rd | 4 - man/tempResponse_daily_list.Rd | 4 - man/temperature_generation.Rd | 4 - man/temperature_scenario_from_records.Rd | 14 +++- man/weather2chillR.Rd | 8 +- 44 files changed, 439 insertions(+), 226 deletions(-)
Title: HTTP and WebSocket Server Library
Description: Provides low-level socket and protocol support for handling
HTTP and WebSocket requests directly from within R. It is primarily
intended as a building block for other packages, rather than making it
particularly easy to create complete web applications using httpuv alone.
httpuv is built on top of the libuv and http-parser C libraries, both of
which were developed by Joyent, Inc. (See LICENSE file for libuv and
http-parser license information.)
Author: Joe Cheng, Hector Corrada Bravo [ctb], Jeroen Ooms [ctb],
Winston Chang [ctb]
Maintainer: Joe Cheng <joe@rstudio.com>
Diff between httpuv versions 1.4.5 dated 2018-07-19 and 1.4.5.1 dated 2018-12-18
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 5 +++++ src/Makevars | 4 +++- src/Makevars.win | 2 ++ 5 files changed, 17 insertions(+), 8 deletions(-)
Title: 'RStudio' Add-in to Insert Markdown Citations
Description: Functions and an 'RStudio' add-in that search a 'Bib(La)TeX'-file to create and
insert formatted Markdown citations into the current document.
Author: Frederik Aust [aut, cre] (<https://orcid.org/0000-0003-4900-788X>),
Yihui Xie [ctb],
Robin Lovelace [ctb],
Garrick Aden-Buie [ctb]
Maintainer: Frederik Aust <frederik.aust@uni-koeln.de>
Diff between citr versions 0.2.0 dated 2016-09-20 and 0.3.0 dated 2018-12-18
DESCRIPTION | 32 + LICENSE | 4 MD5 | 38 +- NAMESPACE | 2 NEWS.md | 11 R/insert_citation.R | 760 +++++++++++++++++++++++++++++++++-------- R/md_cite.R | 11 R/md_cite_zotero.R | 6 R/merge_authors.R |only R/onload.R | 9 R/query_bib.R | 161 +++++++- R/tidy_bib_file.R |only README.md | 122 ++++-- inst/rstudio/addins.dcf | 2 man/insert_citation.Rd | 11 man/load_betterbiblatex_bib.Rd |only man/md_cite.Rd | 13 man/md_cite_zotero.Rd | 8 man/query_bib.Rd | 17 man/tidy_bib_file.Rd |only tools |only 21 files changed, 947 insertions(+), 260 deletions(-)
Title: Hierarchical Multinomial Processing Tree Modeling
Description: User-friendly analysis of hierarchical multinomial processing tree (MPT)
models that are often used in cognitive psychology. Implements the latent-trait
MPT approach (Klauer, 2010) <DOI:10.1007/s11336-009-9141-0> and the beta-MPT
approach (Smith & Batchelder, 2010) <DOI:10.1016/j.jmp.2009.06.007> to model
heterogeneity of participants. MPT models are conveniently specified by an
.eqn-file as used by other MPT software and data are provided by a .csv-file
or directly in R. Models are either fitted by calling JAGS or by an MPT-tailored
Gibbs sampler in C++ (only for nonhierarchical and beta MPT models). Provides
tests of heterogeneity and MPT-tailored summaries and plotting functions.
A detailed documentation is available in Heck, Arnold, & Arnold (2018)
<DOI:10.3758/s13428-017-0869-7>.
Author: Daniel W. Heck [aut, cre],
Nina R. Arnold [aut, dtc],
Denis Arnold [aut],
Alexander Ly [ctb]
Maintainer: Daniel W. Heck <heck@uni-mannheim.de>
Diff between TreeBUGS versions 1.4.0 dated 2018-05-15 and 1.4.1 dated 2018-12-18
DESCRIPTION | 14 - MD5 | 67 ++--- NAMESPACE | 3 NEWS | 7 R/CollectionOfInputProcessingFunctions.R | 2 R/PPP.R | 15 - R/WAIC.R |only R/arnold2013.R | 6 R/callingSampler.R | 4 R/correlationBayesMCMC.R | 9 R/covariateHandling.R | 12 R/extendMPT.R | 2 R/plotParameters.R | 1 R/posteriorPredictive.R | 10 R/summarizeMCMC.R | 109 ++++---- R/transformedParPosthoc.R | 10 R/within_subject_EQN.R | 32 +- build/vignette.rds |binary inst/doc/Heck_2018_BRM.pdf |only inst/doc/Heck_2018_BRM.pdf.asis |only inst/doc/TreeBUGS_1_intro.html | 408 ++++++++++++++++++++++++------- inst/doc/TreeBUGS_2_extended.html | 382 +++++++++++++++++++++++------ man/PPP.Rd | 4 man/WAIC.Rd |only man/arnold2013.Rd | 5 man/betaMPTcpp.Rd | 5 man/betweenSubjectMPT.Rd | 4 man/correlationPosterior.Rd | 10 man/extendMPT.Rd | 3 man/marginalMPT.Rd | 7 man/plotFreq.Rd | 3 man/plotPriorPost.Rd | 4 man/simpleMPT.Rd | 4 man/summarizeMCMC.Rd | 7 man/traitMPT.Rd | 8 man/transformedParameters.Rd | 4 vignettes/Heck_2018_BRM.pdf.asis |only 37 files changed, 849 insertions(+), 312 deletions(-)
Title: Data Visualization for Statistics in Social Science
Description: Collection of plotting and table output functions for data
visualization. Results of various statistical analyses (that are commonly used
in social sciences) can be visualized using this package, including simple and
cross tabulated frequencies, histograms, box plots, (generalized) linear models,
mixed effects models, principal component analysis and correlation matrices,
cluster analyses, scatter plots, stacked scales, effects plots of regression
models (including interaction terms) and much more. This package supports
labelled data.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Carsten Schwemmer [ctb]
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjPlot versions 2.6.1 dated 2018-10-14 and 2.6.2 dated 2018-12-18
sjPlot-2.6.1/sjPlot/R/sjTabLinReg.R |only sjPlot-2.6.1/sjPlot/R/sjTabOdds.R |only sjPlot-2.6.1/sjPlot/R/table_functions.R |only sjPlot-2.6.1/sjPlot/man/sjt.glm.Rd |only sjPlot-2.6.1/sjPlot/man/sjt.glmer.Rd |only sjPlot-2.6.1/sjPlot/man/sjt.lm.Rd |only sjPlot-2.6.1/sjPlot/man/sjt.lmer.Rd |only sjPlot-2.6.2/sjPlot/DESCRIPTION | 24 sjPlot-2.6.2/sjPlot/MD5 | 103 - sjPlot-2.6.2/sjPlot/NAMESPACE | 16 sjPlot-2.6.2/sjPlot/NEWS.md | 26 sjPlot-2.6.2/sjPlot/R/S3-methods.R | 69 sjPlot-2.6.2/sjPlot/R/helpfunctions.R | 211 -- sjPlot-2.6.2/sjPlot/R/html_print.R | 45 sjPlot-2.6.2/sjPlot/R/html_print_utils.R | 6 sjPlot-2.6.2/sjPlot/R/plot_model.R | 63 sjPlot-2.6.2/sjPlot/R/plot_models.R | 2 sjPlot-2.6.2/sjPlot/R/plot_residuals.R | 8 sjPlot-2.6.2/sjPlot/R/plot_type_eff.R | 34 sjPlot-2.6.2/sjPlot/R/plot_type_est.R | 1 sjPlot-2.6.2/sjPlot/R/plot_type_int.R | 3 sjPlot-2.6.2/sjPlot/R/select_helpers.R | 24 sjPlot-2.6.2/sjPlot/R/sjPlotAnova.R | 6 sjPlot-2.6.2/sjPlot/R/sjPlotFrequencies.R | 4 sjPlot-2.6.2/sjPlot/R/sjPlotPCA.R | 6 sjPlot-2.6.2/sjPlot/R/sjPlotSetTheme.R | 1328 ++++++++-------- sjPlot-2.6.2/sjPlot/R/sjTabPCA.R | 8 sjPlot-2.6.2/sjPlot/R/sjTabSPSS.R | 10 sjPlot-2.6.2/sjPlot/R/sjTabStackFrq.R | 4 sjPlot-2.6.2/sjPlot/R/sjplot_themes.R | 13 sjPlot-2.6.2/sjPlot/R/tab_model.R | 82 sjPlot-2.6.2/sjPlot/R/tidiers.R | 128 - sjPlot-2.6.2/sjPlot/R/utils.R | 10 sjPlot-2.6.2/sjPlot/README.md | 4 sjPlot-2.6.2/sjPlot/build/partial.rdb |binary sjPlot-2.6.2/sjPlot/inst/doc/blackwhitefigures.html | 386 +++- sjPlot-2.6.2/sjPlot/inst/doc/custplot.html | 556 ++++-- sjPlot-2.6.2/sjPlot/inst/doc/plot_interactions.html | 378 +++- sjPlot-2.6.2/sjPlot/inst/doc/plot_marginal_effects.html | 408 +++- sjPlot-2.6.2/sjPlot/inst/doc/plot_model_estimates.html | 530 ++++-- sjPlot-2.6.2/sjPlot/inst/doc/sjtitemanalysis.html | 326 +++ sjPlot-2.6.2/sjPlot/inst/doc/tab_bayes.html | 627 +++++-- sjPlot-2.6.2/sjPlot/inst/doc/tab_mixed.html | 426 +++-- sjPlot-2.6.2/sjPlot/inst/doc/tab_model_estimates.R | 3 sjPlot-2.6.2/sjPlot/inst/doc/tab_model_estimates.Rmd | 9 sjPlot-2.6.2/sjPlot/inst/doc/tab_model_estimates.html | 705 ++++++-- sjPlot-2.6.2/sjPlot/inst/doc/table_css.html | 523 ++++-- sjPlot-2.6.2/sjPlot/man/plot_model.Rd | 49 sjPlot-2.6.2/sjPlot/man/sjPlot-themes.Rd | 6 sjPlot-2.6.2/sjPlot/man/sjp.pca.Rd | 3 sjPlot-2.6.2/sjPlot/man/sjt.pca.Rd | 3 sjPlot-2.6.2/sjPlot/man/sjt.stackfrq.Rd | 4 sjPlot-2.6.2/sjPlot/man/sjt.xtab.Rd | 4 sjPlot-2.6.2/sjPlot/man/tab_model.Rd | 16 sjPlot-2.6.2/sjPlot/man/view_df.Rd | 7 sjPlot-2.6.2/sjPlot/vignettes/tab_model_estimates.Rmd | 9 56 files changed, 4874 insertions(+), 2342 deletions(-)
Title: Back-Calculation of Fish Length
Description: Helps fisheries scientists collect measurements from calcified
structures and back-calculate estimated lengths at previous ages using
standard procedures and models. This is intended to replace much of the
functionality provided by the now out-dated 'fishBC' software.
Author: Derek Ogle [aut, cre] (<https://orcid.org/0000-0002-0370-9299>)
Maintainer: Derek Ogle <derek@derekogle.com>
Diff between RFishBC versions 0.1.1 dated 2018-11-18 and 0.2.0 dated 2018-12-18
RFishBC-0.1.1/RFishBC/tests/testthat/Rplots.pdf |only RFishBC-0.1.1/RFishBC/tests/testthat/Rplots1.pdf |only RFishBC-0.1.1/RFishBC/tests/testthat/Rplots10.pdf |only RFishBC-0.1.1/RFishBC/tests/testthat/Rplots11.pdf |only RFishBC-0.1.1/RFishBC/tests/testthat/Rplots2.pdf |only RFishBC-0.1.1/RFishBC/tests/testthat/Rplots3.pdf |only RFishBC-0.1.1/RFishBC/tests/testthat/Rplots4.pdf |only RFishBC-0.1.1/RFishBC/tests/testthat/Rplots5.pdf |only RFishBC-0.1.1/RFishBC/tests/testthat/Rplots6.pdf |only RFishBC-0.1.1/RFishBC/tests/testthat/Rplots7.pdf |only RFishBC-0.1.1/RFishBC/tests/testthat/Rplots8.pdf |only RFishBC-0.1.1/RFishBC/tests/testthat/Rplots9.pdf |only RFishBC-0.2.0/RFishBC/.Rinstignore |only RFishBC-0.2.0/RFishBC/DESCRIPTION | 14 +- RFishBC-0.2.0/RFishBC/MD5 | 55 +++------ RFishBC-0.2.0/RFishBC/NEWS.md | 22 +++ RFishBC-0.2.0/RFishBC/R/RFBCoptions.R | 26 ++-- RFishBC-0.2.0/RFishBC/R/RFishBC-internals.R | 17 +- RFishBC-0.2.0/RFishBC/R/combineData.R | 28 +++- RFishBC-0.2.0/RFishBC/R/digitizeRadii.R | 75 ++++++------- RFishBC-0.2.0/RFishBC/R/findScalingFactor.R | 3 RFishBC-0.2.0/RFishBC/R/showDigitizedImage.R | 63 ++++++---- RFishBC-0.2.0/RFishBC/man/RFBCoptions.Rd | 19 +-- RFishBC-0.2.0/RFishBC/man/combineData.Rd | 8 - RFishBC-0.2.0/RFishBC/man/digitizeRadii.Rd | 4 RFishBC-0.2.0/RFishBC/man/showDigitizedImage.Rd | 12 +- RFishBC-0.2.0/RFishBC/tests/testthat/DWS_Oto_89765_DHO.rds |only RFishBC-0.2.0/RFishBC/tests/testthat/Oto140306_DHO.rds |binary RFishBC-0.2.0/RFishBC/tests/testthat/Oto140306_OHD.rds |binary RFishBC-0.2.0/RFishBC/tests/testthat/Scale_1_DHO.rds |binary RFishBC-0.2.0/RFishBC/tests/testthat/Scale_1_ODH.rds |binary RFishBC-0.2.0/RFishBC/tests/testthat/Scale_1_OHD.rds |binary RFishBC-0.2.0/RFishBC/tests/testthat/Scale_2_DHO.rds |binary RFishBC-0.2.0/RFishBC/tests/testthat/Scale_3_DHO.rds |binary RFishBC-0.2.0/RFishBC/tests/testthat/test_MESSAGES.R | 12 +- RFishBC-0.2.0/RFishBC/tests/testthat/test_OUTPUTS.R | 72 +++++++++++- 36 files changed, 274 insertions(+), 156 deletions(-)
Title: Nested and Crossed Block Designs for Factorial, Fractional
Factorial and Unstructured Treatment Sets
Description: Constructs D-optimal or near D-optimal nested and crossed
block designs for unstructured or general factorial treatment designs.
The treatment design, if required, is found from a defined model
matrix design formula. The block design is found from a defined
set of block factors and is conditional on the defined treatment design.
The block factors are added in sequence and each added block factor
is optimized conditional on all previously added block factors.
The block design can have repeated nesting down to any required
depth of nesting with either simple nested blocks or a
crossed blocks design at each level of nesting. Outputs include a table
showing the allocation of treatments to blocks and tables showing
the achieved D-efficiency factors for each block and treatment design.
Author: R. N. Edmondson.
Maintainer: Rodney Edmondson <rodney.edmondson@gmail.com>
Diff between blocksdesign versions 3.1 dated 2018-10-18 and 3.2 dated 2018-12-18
blocksdesign-3.1/blocksdesign/inst |only blocksdesign-3.2/blocksdesign/DESCRIPTION | 19 blocksdesign-3.2/blocksdesign/MD5 | 25 blocksdesign-3.2/blocksdesign/NAMESPACE | 1 blocksdesign-3.2/blocksdesign/R/blocks.r | 287 +++--- blocksdesign-3.2/blocksdesign/R/blocksdesign-package.r | 94 +- blocksdesign-3.2/blocksdesign/R/design.r | 627 +++++++------- blocksdesign-3.2/blocksdesign/R/efficiencies.R | 120 +- blocksdesign-3.2/blocksdesign/R/upper_bounds.r | 168 +-- blocksdesign-3.2/blocksdesign/man/blockEfficiencies.Rd | 9 blocksdesign-3.2/blocksdesign/man/blocks.Rd | 64 - blocksdesign-3.2/blocksdesign/man/blocksdesign-package.Rd | 94 +- blocksdesign-3.2/blocksdesign/man/design.Rd | 324 +++---- 13 files changed, 992 insertions(+), 840 deletions(-)
Title: Mathematical Modeling of Infectious Disease Dynamics
Description: Tools for simulating mathematical models of infectious disease dynamics.
Epidemic model classes include deterministic compartmental models, stochastic
individual-contact models, and stochastic network models. Network models use the
robust statistical methods of exponential-family random graph models (ERGMs)
from the Statnet suite of software packages in R. Standard templates for epidemic
modeling include SI, SIR, and SIS disease types. EpiModel features
an API for extending these templates to address novel scientific research aims.
Author: Samuel Jenness [cre, aut],
Steven M. Goodreau [aut],
Martina Morris [aut],
Emily Beylerian [ctb],
Skye Bender-deMoll [ctb],
Kevin Weiss [ctb],
Shawnee Anderson [ctb]
Maintainer: Samuel Jenness <samuel.m.jenness@emory.edu>
Diff between EpiModel versions 1.7.0 dated 2018-11-21 and 1.7.2 dated 2018-12-18
DESCRIPTION | 18 +++-- MD5 | 53 +++++++++------ NAMESPACE | 5 + NEWS.md | 27 ++++++++ R/EpiModel-package.r | 6 + R/ErgmTerms.R |only R/as.data.frame.R | 2 R/control.R | 27 +++++++- R/get.R | 33 ++++++++- R/merge.R | 4 - R/net.mod.status.R | 12 +-- R/netsim.R | 4 + R/param.R | 41 ++++++++---- R/utils.R | 52 +++++++++++++++ R/verbose.R | 118 +++-------------------------------- build/vignette.rds |binary inst/EpiModelJSS.R | 2 inst/doc/Intro.html | 69 +++++++++++++++++++- inst/shiny/epidcm/server.R | 2 inst/shiny/epiicm/server.R | 2 inst/shiny/epinet/server.R | 4 - man/EpiModel-package.Rd | 4 - man/InitErgmTerm.absdiffby.Rd |only man/InitErgmTerm.absdiffnodemix.Rd |only man/apportion_lr.Rd |only man/get_args.Rd |only src |only tests/testthat/test-transmat-dendo.R | 117 ++++++++++++++++++++++++++++++++-- tests/testthat/test-utils.R | 19 ++++- 29 files changed, 434 insertions(+), 187 deletions(-)
Title: Discrete Bayesian Additive Regression Trees Sampler
Description: Fits Bayesian additive regression trees (BART; Chipman, George, and McCulloch (2010) <doi:10.1214/09-AOAS285>) while allowing the updating of predictors or response so that BART can be incorporated as a conditional model in a Gibbs/MH sampler. Also serves as a drop-in replacement for package 'BayesTree'.
Author: Vincent Dorie [aut, cre],
Hugh Chipman [aut],
Robert McCulloch [aut]
Maintainer: Vincent Dorie <vdorie@gmail.com>
Diff between dbarts versions 0.9-5 dated 2018-07-07 and 0.9-7 dated 2018-12-18
DESCRIPTION | 8 +-- MD5 | 64 +++++++++++++------------- NAMESPACE | 3 - R/A_class.R | 2 R/bart.R | 4 - R/dbarts.R | 23 +++++++-- R/plot.R | 76 ++++++++++++++++++++++++++++--- R/rbart.R | 55 ++++++++++++++-------- R/sliceSample.R | 34 ++++++++++--- TODO | 1 configure | 18 +++---- configure.ac | 2 inst/NEWS.Rd | 22 ++++++++ man/bart.Rd | 12 ++-- man/rbart.Rd | 20 ++++++-- src/Makevars.in | 76 +++++++++++-------------------- src/Makevars.win | 66 ++++++++++++-------------- src/R_interface_common.cpp | 30 ++++++------ src/R_interface_crossvalidate.cpp | 2 src/config.hpp.win | 4 - src/crossvalidate.cpp | 3 - src/dbarts/Makefile | 23 ++++----- src/dbarts/bartFit.cpp | 9 ++- src/dbarts/config.hpp.win | 4 - src/external/Makefile | 10 ++-- src/external/blockingThreadManager.c | 2 src/external/config.h.win | 4 - src/external/hierarchicalThreadManager.c | 11 +++- src/include/rc/util.h | 11 ++++ src/makeModelMatrixFromDataFrame.c | 6 -- src/rc/Makefile | 7 +- tests/testthat/test-09-predict.R | 14 +++++ tests/testthat/test-14-rbart.R | 3 - 33 files changed, 385 insertions(+), 244 deletions(-)
Title: Collection for 'CornerstoneR' Interface
Description: Collection of scripts for interface between 'Cornerstone' and 'R'.
'Cornerstone' (<https://www.camline.com/>) is a software for engineering analytics which
supports an interface to 'R'. The scripts are designed to support an easy usage of this
interface.
Author: Dirk Surmann [aut, cre] (<https://orcid.org/0000-0003-0873-137X>)
Maintainer: Dirk Surmann <dirk.surmann@versuchsplanung.de>
Diff between CornerstoneR versions 1.0.0 dated 2018-12-16 and 1.0.1 dated 2018-12-18
DESCRIPTION | 11 ++++---- MD5 | 17 +++++++------ NEWS.md | 6 +++- R/helper.R | 6 +--- R/randomForest.R | 4 +++ man/randomForest.Rd | 7 ++++- tests/testthat/Rplots.pdf |binary tests/testthat/test_aaa.R | 32 ++++++++++++++------------ tests/testthat/test_localInterface.R |only tests/testthat/test_randomForest.R | 43 ++++++++++++++++++++--------------- 10 files changed, 74 insertions(+), 52 deletions(-)
Title: Wrapper for MUMPS Library
Description: Some basic features of MUMPS (Multifrontal Massively Parallel
sparse direct Solver) are wrapped in a class whose methods can be used
for sequentially solving a sparse linear system (symmetric or not)
with one or many right hand sides (dense or sparse).
There is a possibility to do separately symbolic analysis,
LU (or LDL^t) factorization and system solving.
Third part ordering libraries are included and can be used: PORD, METIS, SCOTCH.
MUMPS method was first described in Amestoy et al. (2001) <doi:10.1137/S0895479899358194>
and Amestoy et al. (2006) <doi:10.1016/j.parco.2005.07.004>.
Author: Serguei Sokol [aut, cre],
Emmanuel Agullo [ctb],
Patrick Amestoy [ctb],
Maurice Bremond [ctb],
Alfredo Buttari [ctb],
Philippe Combes [ctb],
Marie Durand [ctb],
Aurelia Fevre [ctb],
Abdou Guermouche [ctb],
Guillaume Joslin [ctb],
Jacko Koster [ctb],
Jean-Yves L'Excellent [ctb],
Stephane Pralet [ctb],
Chiara Puglisi [ctb],
Francois-Henry Rouet [ctb],
Wissam Sid-Lakhdar [ctb],
Tzvetomila Slavova [ctb],
Bora Ucar [ctb],
Clement Weisbecker [ctb],
Juergen Schulze [ctb],
George Karypis [ctb],
Douglas C. Schmidt [ctb],
Isamu Hasegawa [ctb],
Alexander Chemeris [ctb],
Makoto Matsumoto [ctb],
Takuji Nishimura [ctb],
Francois Pellegrini [ctb],
David Goudin [ctb],
Pascal Henon [ctb],
Pierre Ramet [ctb],
Sebastien Fourestier [ctb],
Jun-Ho Her [ctb],
Cedric Chevalier [ctb],
Timothy A. Davis [ctb],
Iain S. Duff [ctb],
John K. Reid [ctb],
Richard Stallman [ctb],
Samuel Thibault [ctb]
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>
Diff between rmumps versions 5.1.2-4 dated 2018-01-05 and 5.1.2-5 dated 2018-12-18
rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/ana_AMDMF.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/ana_omp_m.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/ana_orderings.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/ana_orderings_wrappers_m.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/ana_set_ordering.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/bcast_errors.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/dana_LDLT_preprocess.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/dana_aux.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/dana_aux_ELT.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/dana_aux_par.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/dana_dist_m.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/dana_driver.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/dana_lr.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/dana_mtrans.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/dana_reordertree.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/darrowheads.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/dbcast_int.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/dend_driver.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/dfac_asm.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/dfac_asm_ELT.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/dfac_asm_master_ELT_m.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/dfac_asm_master_m.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/dfac_b.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/dfac_determinant.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/dfac_distrib_ELT.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/dfac_distrib_distentry.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/dfac_driver.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/dfac_front_LDLT_type1.F |only 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rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/mumps_static_mapping.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/mumps_type2_blocking.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/mumps_type_size.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/mumps_version.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/omp_tps_common_m.F |only rmumps-5.1.2-4/rmumps/src/lib/MUMPS_5.1.2/src/tools_common.F |only rmumps-5.1.2-5/rmumps/DESCRIPTION | 10 rmumps-5.1.2-5/rmumps/MD5 | 247 +++++----- rmumps-5.1.2-5/rmumps/NEWS | 7 rmumps-5.1.2-5/rmumps/man/rmumps-package.Rd | 6 rmumps-5.1.2-5/rmumps/src/Makevars | 2 rmumps-5.1.2-5/rmumps/src/Makevars.seq |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/libseq/mpi.f | 198 ++++---- rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/Makefile | 76 +-- rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/ana_AMDMF.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/ana_omp_m.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/ana_orderings.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/ana_orderings_wrappers_m.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/ana_set_ordering.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/bcast_errors.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dana_LDLT_preprocess.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dana_aux.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dana_aux_ELT.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dana_aux_par.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dana_dist_m.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dana_driver.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dana_lr.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dana_mtrans.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dana_reordertree.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/darrowheads.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dbcast_int.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dend_driver.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_asm.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_asm_ELT.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_asm_master_ELT_m.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_asm_master_m.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_b.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_determinant.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_distrib_ELT.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_distrib_distentry.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_driver.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_front_LDLT_type1.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_front_LDLT_type2.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_front_LU_type1.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_front_LU_type2.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_front_aux.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_front_type2_aux.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_lastrtnelind.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_lr.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_mem_alloc_cb.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_mem_compress_cb.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_mem_free_block_cb.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_mem_stack.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_mem_stack_aux.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_omp_m.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_par_m.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_process_band.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_process_bf.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_process_blfac_slave.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_process_blocfacto.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_process_blocfacto_LDLT.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_process_contrib_type1.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_process_contrib_type2.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_process_contrib_type3.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_process_end_facto_slave.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_process_maprow.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_process_master2.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_process_message.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_process_root2slave.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_process_root2son.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_process_rtnelind.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_root_parallel.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_scalings.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_scalings_simScaleAbs.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_scalings_simScale_util.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_sol_pool.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dfac_type3_symmetrize.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dini_defaults.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dini_driver.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dlr_core.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dlr_stats.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dlr_type.F95 |only 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rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/double_linked_list.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/drank_revealing.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dsol_aux.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dsol_bwd.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dsol_bwd_aux.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dsol_c.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dsol_driver.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dsol_fwd.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dsol_fwd_aux.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dsol_matvec.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dsol_root_parallel.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dstatic_ptr_m.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dtools.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/dtype3_root.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/estim_flops.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/fac_asm_build_sort_index_ELT_m.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/fac_asm_build_sort_index_m.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/fac_descband_data_m.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/fac_future_niv2_mod.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/fac_ibct_data_m.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/fac_maprow_data_m.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/front_data_mgt_m.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/lr_common.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/mumps_comm_ibcast.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/mumps_l0_omp_m.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/mumps_memory_mod.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/mumps_ooc_common.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/mumps_print_defined.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/mumps_sol_es.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/mumps_static_mapping.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/mumps_type2_blocking.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/mumps_type_size.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/mumps_version.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/omp_tps_common_m.F95 |only rmumps-5.1.2-5/rmumps/src/lib/MUMPS_5.1.2/src/tools_common.F95 |only rmumps-5.1.2-5/rmumps/src/lib/Makefile | 2 241 files changed, 278 insertions(+), 270 deletions(-)
Title: Quickly Create Elegant Regression Results Tables and Plots when
Modelling
Description: Generate regression results tables and plots in final
format for publication. Explore models and export directly to PDF
and 'Word' using 'RMarkdown'.
Author: Ewen Harrison [aut, cre],
Tom Drake [aut],
Riinu Ots [aut]
Maintainer: Ewen Harrison <ewen.harrison@ed.ac.uk>
Diff between finalfit versions 0.8.8 dated 2018-11-09 and 0.8.9 dated 2018-12-18
DESCRIPTION | 10 MD5 | 62 +- NAMESPACE | 12 NEWS.md | 9 R/coefficient_plot.R |only R/ff_interaction.R | 17 R/ff_label.R |only R/ff_plot.R |only R/finalfit.R | 3 R/finalfit_internal_functions.R | 85 +++ R/finalfit_package.R | 10 R/fit2df.R | 2 R/hr_plot.R | 4 R/missing_glimpse.R | 5 R/or_plot.R | 216 +++++----- R/summaryfactorlist.R | 5 inst/doc/bootstrap.html | 22 - inst/doc/export.html | 47 +- inst/doc/missing.html | 36 - man/coefficient_plot.Rd |only man/compoundpipe.Rd |only man/error_colon_fct_levels.Rd |only man/extract_variable_label.Rd | 12 man/ff_interaction.Rd | 4 man/ff_label.Rd | 9 man/ff_plot.Rd |only man/ff_relabel.Rd |only man/fit2df.Rd | 2 man/hr_plot.Rd | 5 man/is.survival.Rd |only man/or_plot.Rd | 28 - man/surv_plot.Rd | 3 man/variable_type.Rd |only tests/testthat/Rplots.pdf |binary tests/testthat/test_internals.R | 30 + tests/testthat/test_plots.R | 19 vignettes/export_cache/html/unnamed-chunk-8_7b1d29257e73baaeb9bec379b79b6c81.RData |binary 37 files changed, 421 insertions(+), 236 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-03 1.0
Title: An Integrated Framework for Textual Sentiment Time Series
Aggregation and Prediction
Description: Optimized prediction based on textual sentiment, accounting for the intrinsic challenge that sentiment can be computed and pooled across texts and time in various ways. See Ardia et al. (2018) <doi:10.2139/ssrn.3067734>.
Author: David Ardia [aut],
Keven Bluteau [aut],
Samuel Borms [aut, cre],
Kris Boudt [aut]
Maintainer: Samuel Borms <samuel.borms@unine.ch>
Diff between sentometrics versions 0.5.5 dated 2018-11-15 and 0.5.6 dated 2018-12-18
DESCRIPTION | 8 +-- MD5 | 53 +++++++++++----------- NAMESPACE | 2 NEWS.md | 6 ++ R/attribution.R | 2 R/deprecated.R | 20 -------- R/sentiment_engines.R | 90 ++++++++++++++++++++++++++++++++------ R/sentocorpus.R | 16 +++--- R/sentolexicons.R | 6 +- R/sentomeasures_main.R | 31 +++++-------- R/sentometrics.R | 26 +++++----- R/sentomodel.R | 10 ++-- README.md | 2 man/add_features.Rd | 6 +- man/attributions.Rd | 2 man/compute_sentiment.Rd | 16 +++--- man/ctr_model.Rd | 6 +- man/epu.Rd | 4 - man/peakdates.Rd |only man/peakdocs.Rd | 42 ++++++++--------- man/sento_corpus.Rd | 10 ++-- man/sento_lexicons.Rd | 6 +- man/sento_measures.Rd | 4 - man/sento_model.Rd | 4 - man/sentometrics-deprecated.Rd | 18 ------- man/sentometrics-package.Rd | 22 ++++----- man/to_sentiment.Rd | 3 + tests/testthat/test_aggregation.R | 18 +++++-- 28 files changed, 235 insertions(+), 198 deletions(-)
Title: A Collection of Oversampling Techniques for Class Imbalance
Problem Based on SMOTE
Description: A collection of various oversampling techniques developed from SMOTE is provided. SMOTE is a oversampling technique which synthesizes a new minority instance between a pair of one minority instance and one of its K nearest neighbor. (see <https://www.jair.org/media/953/live-953-2037-jair.pdf> for more information) Other techniques adopt this concept with other criteria in order to generate balanced dataset for class imbalance problem.
Author: Wacharasak Siriseriwan [aut, cre]
Maintainer: Wacharasak Siriseriwan <wacharasak.s@gmail.com>
Diff between smotefamily versions 1.2 dated 2018-01-30 and 1.3 dated 2018-12-18
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- R/knearest.R | 12 +++++++----- 3 files changed, 14 insertions(+), 12 deletions(-)
More information about sensitivityCalibration at CRAN
Permanent link
Title: Publication-Quality Graphics
Description: Simple and crisp publication-quality graphics for the ExPosition family of packages.
See An ExPosition of the Singular Value Decomposition in R (Beaton et al 2014) <doi:10.1016/j.csda.2013.11.006>.
Author: Derek Beaton
Maintainer: Derek Beaton <exposition.software@gmail.com>
Diff between prettyGraphs versions 2.1.5 dated 2013-12-10 and 2.1.6 dated 2018-12-18
DESCRIPTION | 15 ++--- MD5 | 20 ++++--- NAMESPACE | 7 ++ R/add.alpha.R |only R/correlationPlotter.R | 22 +++++--- R/makeAxes.R | 2 R/plotCircle.R | 18 +++--- R/prettyScree.R | 2 inst/CITATION | 8 +- man/add.alpha.Rd |only man/correlationPlotter.Rd | 119 ++++++++++++++++++++++++-------------------- man/prettyGraphs-package.Rd | 83 +++++++++++++++--------------- 12 files changed, 163 insertions(+), 133 deletions(-)
Title: Probabilistic Sex Estimate using Logistic Regression, Based on
VISual Traits of the Human Os Coxae
Description: An R-Shiny application implementing two methods for sexing the human os coxae based on eleven trichotomic traits, following Bruzek (2002) <doi:10.1002/ajpa.10012>.
Author: Frédéric Santos [aut, cre] (<https://orcid.org/0000-0003-1445-3871>)
Maintainer: Frédéric Santos <frederic.santos@u-bordeaux.fr>
Diff between PELVIS versions 1.0.4 dated 2018-08-05 and 1.0.5 dated 2018-12-18
DESCRIPTION | 15 ++++++++------- MD5 | 18 +++++++++--------- NAMESPACE | 1 + R/sexingFromFile.R | 16 ++++++++-------- inst/CITATION | 7 +++---- inst/PELVISShinyApp/server.R | 10 ++++++---- inst/PELVISShinyApp/ui.R | 8 ++++---- man/PELVIS-package.Rd | 4 ++-- man/StartPELVIS.Rd | 2 +- man/sexingFromFile.Rd | 2 +- 10 files changed, 43 insertions(+), 40 deletions(-)
Title: Dynamic Range Boxes
Description: Improves the concept of multivariate range boxes, which is highly susceptible for outliers and does not consider the distribution of the data. The package uses dynamic range boxes to overcome these problems.
Author: Manuela Schreyer <manuelalarissa.schreyer@sbg.ac.at>,
Wolfgang Trutschnig <Wolfgang.Trutschnig@sbg.ac.at>,
Robert R. Junker <Robert.Junker@sbg.ac.at>,
Jonas Kuppler <Jonas.Kuppler@uni-duesseldorf.de>,
Arne Bathke <Arne.Bathke@sbg.ac.at>,
Judith H. Parkinson <judith.parkinson@sbg.ac.at>,
Raoul Kutil <Raoul_Hugo.Kutil@stud.sbg.ac.at>
Maintainer: Florian Griessenberger <florian.griessenberger@sbg.ac.at>
Diff between dynRB versions 0.13 dated 2018-07-13 and 0.15 dated 2018-12-18
DESCRIPTION | 17 ++++++++++------- MD5 | 10 ++++++---- NAMESPACE | 4 ++-- R/dynRB-internal.R | 51 ++++++++++++++++++++++++++++++++++++++++++++++++++- R/ranks_OV.R |only man/dynRB-package.Rd | 11 +++++++---- man/ranks_OV.Rd |only 7 files changed, 75 insertions(+), 18 deletions(-)
Title: Adaptive Multivariate Integration over Hypercubes
Description: R wrappers around the cubature C library of Steven
G. Johnson for adaptive multivariate integration over hypercubes
and the Cuba C library of Thomas Hahn for deterministic and
Monte Carlo integration. Scalar and vector interfaces for
cubature and Cuba routines are provided; the vector interfaces
are highly recommended as demonstrated in the package
vignette.
Author: Balasubramanian Narasimhan [aut, cre],
Manuel Koller [ctb],
Steven G. Johnson [aut],
Thomas Hahn [aut],
Annie Bouvier [aut],
Kiên Kiêu [aut],
Simen Gaure [ctb]
Maintainer: Balasubramanian Narasimhan <naras@stat.stanford.edu>
Diff between cubature versions 2.0.2 dated 2018-12-11 and 2.0.3 dated 2018-12-18
DESCRIPTION | 6 MD5 | 21 - NEWS.md | 9 inst/doc/cubature.html | 673 ++++++++++++++++++++++++--------------- inst/doc/version2.html | 209 +++++++++++- inst/include/cuba.h |only src/Cuba-4.2/config.log | 93 ++--- src/Cuba-4.2/config.status | 10 src/Cuba-4.2/makefile | 2 src/Cuba-4.2/src/divonne/Split.c | 4 src/Makevars | 8 src/Makevars.win | 9 12 files changed, 711 insertions(+), 333 deletions(-)
Title: Conditional Random Fields
Description: Implements modeling and computational tools for conditional
random fields (CRF) model as well as other probabilistic undirected
graphical models of discrete data with pairwise and unary potentials.
Author: Ling-Yun Wu [aut, cre]
Maintainer: Ling-Yun Wu <wulingyun@gmail.com>
Diff between CRF versions 0.3-16 dated 2018-05-07 and 0.4-0 dated 2018-12-18
DESCRIPTION | 13 +++++---- MD5 | 69 +++++++++++++++++++++++++++----------------------- NAMESPACE | 2 + R/decode.R | 26 ++++++++++++++++++ R/infer.R | 28 ++++++++++++++++++++ build/vignette.rds |binary data/Chain.RData |binary data/Clique.RData |binary data/Loop.RData |binary data/Rain.RData |binary data/Small.RData |binary data/Tree.RData |binary inst/doc/Tutorial.pdf |binary man/decode.cutset.Rd | 4 +- man/decode.greedy.Rd | 3 +- man/decode.rbp.Rd |only man/infer.rbp.Rd |only man/train.mrf.Rd | 4 +- src/BP.cpp | 40 +++++++++++++++++++++++----- src/CRF.cpp | 2 + src/CRF.h | 16 +++++++++-- src/Decode_Cutset.cpp | 10 ++++--- src/Decode_Greedy.cpp | 9 ++++-- src/Decode_ICM.cpp | 9 ++++-- src/Decode_RBP.cpp |only src/FibHeap.cpp |only src/FibHeap.h |only src/Infer_RBP.cpp |only src/LoopyBP.cpp | 26 ++---------------- src/Potential.cpp | 6 +--- src/ResidualBP.cpp |only src/Sample_Gibbs.cpp | 16 +++++------ src/TRBP.cpp | 4 +- src/Train.cpp | 53 ++++++++++++++++++++++++++++---------- src/TreeBP.cpp | 4 +- src/misc.cpp | 6 ++-- src/misc.h | 34 ++++++++++++------------ tests/test.decode.R | 5 +++ tests/test.infer.R | 6 ++++ 39 files changed, 258 insertions(+), 137 deletions(-)
Title: Choose Univariate Class Intervals
Description: Selected commonly used methods for choosing univariate class intervals for mapping or other graphics purposes.
Author: Roger Bivand [aut, cre] (<https://orcid.org/0000-0003-2392-6140>),
Hisaji Ono [ctb],
Richard Dunlap [ctb],
Matthieu Stigler [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between classInt versions 0.2-3 dated 2018-04-16 and 0.3-1 dated 2018-12-18
DESCRIPTION | 12 +++-- MD5 | 16 +++---- NAMESPACE | 1 man/classIntervals.Rd | 89 +++++++++++++++++++++++++++++++---------- man/findColours.Rd | 18 +++++++- man/findCols.Rd | 14 +++++- man/getBclustClassIntervals.Rd | 12 +++++ man/jenks.tests.Rd | 42 +++++++++++++++---- tests/test_Unique.Rout.save | 8 --- 9 files changed, 159 insertions(+), 53 deletions(-)
Title: Chaos Game
Description: The main objective of the package is to enter a word of at least two letters based on which an Iterated Function System with Probabilities is constructed, and a two-dimensional fractal containing the chosen word infinitely often is generated via the Chaos Game. Additionally, the package allows to project the two-dimensional fractal on several three-dimensional surfaces and to transform the fractal into another fractal with uniform marginals.
Author: Manuela Schreyer <manuelalarissa.schreyer@sbg.ac.at>,
Wolfgang Trutschnig <Wolfgang.Trutschnig@sbg.ac.at>
Maintainer: Florian Griessenberger <florian.griessenberger@sbg.ac.at>
Diff between ChaosGame versions 0.3 dated 2017-07-20 and 0.4 dated 2018-12-18
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- man/ChaosGame-package.Rd | 4 ++-- 3 files changed, 9 insertions(+), 9 deletions(-)
Title: Quantile Regression
Description: Estimation and inference methods for models of conditional quantiles:
Linear and nonlinear parametric and non-parametric (total variation penalized) models
for conditional quantiles of a univariate response and several methods for handling
censored survival data. Portfolio selection methods based on expected shortfall
risk are also included.
Author: Roger Koenker [cre, aut],
Stephen Portnoy [ctb] (Contributions to Censored QR code),
Pin Tian Ng [ctb] (Contributions to Sparse QR code),
Achim Zeileis [ctb] (Contributions to dynrq code essentially identical
to his dynlm code),
Philip Grosjean [ctb] (Contributions to nlrq code),
Brian D Ripley [trl, ctb] (Initial (2001) R port from S (to my
everlasting shame -- how could I have been so slow to adopt R!) and
for numerous other suggestions and useful advice)
Maintainer: Roger Koenker <rkoenker@illinois.edu>
Diff between quantreg versions 5.36 dated 2018-05-29 and 5.38 dated 2018-12-18
quantreg-5.36/quantreg/inst/doc/engelcoef.pdf |only quantreg-5.36/quantreg/inst/doc/rq-Frankplot.pdf |only quantreg-5.36/quantreg/inst/doc/rq-cobar.pdf |only quantreg-5.36/quantreg/inst/doc/rq-engellogplot.pdf |only quantreg-5.36/quantreg/inst/doc/rq-engelplot.pdf |only quantreg-5.36/quantreg/inst/doc/rq-eqfs.pdf |only quantreg-5.36/quantreg/inst/doc/rq-mammals.pdf |only quantreg-5.36/quantreg/inst/doc/rq-mcycle1.pdf |only quantreg-5.36/quantreg/inst/doc/rq-regspline.pdf |only quantreg-5.36/quantreg/src/init.c |only quantreg-5.36/quantreg/src/mcmb.c |only quantreg-5.36/quantreg/vignettes/gasprice.R |only quantreg-5.38/quantreg/DESCRIPTION | 6 +-- quantreg-5.38/quantreg/MD5 | 38 ++++++-------------- quantreg-5.38/quantreg/R/anova.R | 2 - quantreg-5.38/quantreg/R/quantreg.R | 7 ++- quantreg-5.38/quantreg/R/rqss.R | 2 - quantreg-5.38/quantreg/build/vignette.rds |binary quantreg-5.38/quantreg/inst/ChangeLog | 18 +++++++++ quantreg-5.38/quantreg/inst/TODO | 10 ----- quantreg-5.38/quantreg/inst/doc/book.bib | 16 ++++---- quantreg-5.38/quantreg/inst/doc/rq.R | 2 - quantreg-5.38/quantreg/inst/doc/rq.Rnw | 2 - quantreg-5.38/quantreg/inst/doc/rq.pdf |binary quantreg-5.38/quantreg/man/rq.Rd | 2 + quantreg-5.38/quantreg/vignettes/rq.Rnw | 2 - 26 files changed, 55 insertions(+), 52 deletions(-)
Title: Collection of Rudimentary Bioinformatics Tools
Description: Provides a bundle of basic and fundamental bioinformatics tools,
such as network querying and alignment, subnetwork extraction and search,
network biomarker identification.
Author: Ling-Yun Wu [aut, cre],
Qiang Huang [aut],
Duanchen Sun [aut]
Maintainer: Ling-Yun Wu <wulingyun@gmail.com>
Diff between Corbi versions 0.4-2 dated 2017-05-03 and 0.4-3 dated 2018-12-18
Corbi-0.4-2/Corbi/vignettes/MarkRank.html |only Corbi-0.4-2/Corbi/vignettes/MarkRank.md |only Corbi-0.4-3/Corbi/DESCRIPTION | 15 ++++++++------- Corbi-0.4-3/Corbi/MD5 | 14 ++++++-------- Corbi-0.4-3/Corbi/build/vignette.rds |binary Corbi-0.4-3/Corbi/inst/doc/MarkRank.pdf |binary Corbi-0.4-3/Corbi/man/net_align.Rd | 5 +++-- Corbi-0.4-3/Corbi/man/net_query.Rd | 6 +++--- Corbi-0.4-3/Corbi/src/misc.cpp | 8 ++++---- 9 files changed, 24 insertions(+), 24 deletions(-)
Title: Core Functions to Read and Fit 13c Time Series from Breath Tests
Description: Reads several formats of 13C data (IRIS/Wagner, BreathID) and CSV.
Creates artificial sample data for testing.
Fits Maes/Ghoos, Bluck-Coward self-correcting formula using 'nls', 'nlme'.
Methods to fit breath test curves with Bayesian Stan methods are refactored to
package 'breathteststan'. For a Shiny GUI, see package
'dmenne/breathtestshiny' on github.
Author: Dieter Menne [aut, cre],
Menne Biomed Consulting Tuebingen [cph],
Benjamin Misselwitz [fnd],
Mark Fox [fnd],
Andreas Steingoetter [dtc],
University Hospital of Zurich, Dep. Gastroenterology [fnd, dtc]
Maintainer: Dieter Menne <dieter.menne@menne-biomed.de>
Diff between breathtestcore versions 0.4.5 dated 2018-10-17 and 0.4.6 dated 2018-12-18
DESCRIPTION | 14 ++-- MD5 | 17 ++--- R/nls_fit.R | 8 +- inst/doc/data_formats.html | 105 +++++++++++++++++++------------- inst/doc/methods_and_concepts.html | 24 ++++++- inst/extdata/invalidnls.xml |only tests/testthat/test_cleanup_data.R | 6 + tests/testthat/test_coef_by_group.R | 2 tests/testthat/test_nls_fit.R | 5 + tests/testthat/test_read_breathid_xml.R | 9 ++ 10 files changed, 125 insertions(+), 65 deletions(-)
More information about breathtestcore at CRAN
Permanent link
Title: An S4 Lattice-Based Package for the Representation of
Multivariate Data
Description: Graphical functionalities for the representation of multivariate data. It is a complete re-implementation of the functions available in the 'ade4' package.
Author: Stéphane Dray <stephane.dray@univ-lyon1.fr> and Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>, with contributions from Jean Thioulouse. Based on earlier work by Alice Julien-Laferrière.
Maintainer: Aurélie Siberchicot <aurelie.siberchicot@univ-lyon1.fr>
Diff between adegraphics versions 1.0-12 dated 2018-08-31 and 1.0-15 dated 2018-12-18
DESCRIPTION | 8 +-- MD5 | 20 +++---- NAMESPACE | 4 - R/ADEg.S1.R | 8 +-- R/C1.density.R | 2 R/C1.gauss.R | 2 R/panelfunctions.R | 2 build/vignette.rds |binary inst/doc/adegraphics.html | 114 ++++++++++++++++++++++++++------------------- man/adegraphics-package.Rd | 6 +- tests/s1d.density.R | 5 - 11 files changed, 96 insertions(+), 75 deletions(-)