Title: Psychometric Mixture Models
Description: Psychometric mixture models based on 'flexmix' infrastructure. At the moment Rasch mixture models
with different parameterizations of the score distribution (saturated vs. mean/variance specification),
Bradley-Terry mixture models, and MPT mixture models are implemented. These mixture models can be estimated
with or without concomitant variables. See vignette('raschmix', package = 'psychomix') for details on the
Rasch mixture models.
Author: Hannah Frick [aut, cre] (<https://orcid.org/0000-0002-6049-5258>),
Friedrich Leisch [aut],
Carolin Strobl [aut],
Florian Wickelmaier [aut],
Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>)
Maintainer: Hannah Frick <hannah.frick@gmail.com>
Diff between psychomix versions 1.1-4 dated 2017-04-07 and 1.1-5 dated 2018-12-19
DESCRIPTION | 16 ++--- MD5 | 29 +++++----- NAMESPACE | 9 +++ NEWS | 6 ++ R/zzz.R |only build/partial.rdb |binary build/vignette.rds |binary inst/doc/raschmix.Rnw | 10 +-- inst/doc/raschmix.pdf |binary inst/doc/scores.pdf |binary man/btmix.Rd | 8 +- man/effectsplot.Rd | 8 +- tests/Examples/psychomix-Ex.Rout.save | 29 +--------- tests/test.Rout.save | 6 +- vignettes/raschmix.Rnw | 10 +-- vignettes/raschmix.Rout.save | 94 +++++++++++++++++----------------- 16 files changed, 113 insertions(+), 112 deletions(-)
Title: Read Excel Files
Description: Import excel files into R. Supports '.xls' via the
embedded 'libxls' C library <https://github.com/evanmiller/libxls> and
'.xlsx' via the embedded 'RapidXML' C++ library
<http://rapidxml.sourceforge.net>. Works on Windows, Mac and Linux
without external dependencies.
Author: Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>),
Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>),
RStudio [cph, fnd] (Copyright holder of all R code and all C/C++ code
without explicit copyright attribution),
Marcin Kalicinski [ctb, cph] (Author of included RapidXML code),
Komarov Valery [ctb, cph] (Author of included libxls code),
Christophe Leitienne [ctb, cph] (Author of included libxls code),
Bob Colbert [ctb, cph] (Author of included libxls code),
David Hoerl [ctb, cph] (Author of included libxls code),
Evan Miller [ctb, cph] (Author of included libxls code)
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between readxl versions 1.1.0 dated 2018-04-19 and 1.2.0 dated 2018-12-19
readxl-1.1.0/readxl/tools |only readxl-1.1.0/readxl/vignettes/geometry.png |only readxl-1.1.0/readxl/vignettes/type-me-date.png |only readxl-1.1.0/readxl/vignettes/type-me-logical.png |only readxl-1.1.0/readxl/vignettes/type-me-numeric.png |only readxl-1.1.0/readxl/vignettes/type-me-text.png |only readxl-1.2.0/readxl/DESCRIPTION | 76 +- readxl-1.2.0/readxl/LICENSE.note | 45 - readxl-1.2.0/readxl/MD5 | 123 +-- readxl-1.2.0/readxl/NAMESPACE | 1 readxl-1.2.0/readxl/NEWS.md | 33 readxl-1.2.0/readxl/R/RcppExports.R | 8 readxl-1.2.0/readxl/R/progress.R |only readxl-1.2.0/readxl/R/read_excel.R | 127 +++ readxl-1.2.0/readxl/README.md | 106 +- readxl-1.2.0/readxl/build/vignette.rds |binary readxl-1.2.0/readxl/inst/doc/cell-and-column-types.R | 8 readxl-1.2.0/readxl/inst/doc/cell-and-column-types.Rmd | 8 readxl-1.2.0/readxl/inst/doc/cell-and-column-types.html | 362 +++++----- readxl-1.2.0/readxl/inst/doc/sheet-geometry.R | 4 readxl-1.2.0/readxl/inst/doc/sheet-geometry.Rmd | 4 readxl-1.2.0/readxl/inst/doc/sheet-geometry.html | 213 +++-- readxl-1.2.0/readxl/inst/extdata/clippy.xls |binary readxl-1.2.0/readxl/inst/extdata/clippy.xlsx |binary readxl-1.2.0/readxl/man/figures |only readxl-1.2.0/readxl/man/read_excel.Rd | 54 + readxl-1.2.0/readxl/man/readxl-package.Rd | 14 readxl-1.2.0/readxl/man/readxl_progress.Rd |only readxl-1.2.0/readxl/src/ColSpec.h | 3 readxl-1.2.0/readxl/src/Makevars | 4 readxl-1.2.0/readxl/src/Makevars.win | 5 readxl-1.2.0/readxl/src/RcppExports.cpp | 18 readxl-1.2.0/readxl/src/Spinner.h |only readxl-1.2.0/readxl/src/XlsCell.h | 5 readxl-1.2.0/readxl/src/XlsWorkBook.cpp | 3 readxl-1.2.0/readxl/src/XlsWorkBook.h | 19 readxl-1.2.0/readxl/src/XlsWorkSheet.cpp | 6 readxl-1.2.0/readxl/src/XlsWorkSheet.h | 50 + readxl-1.2.0/readxl/src/XlsxWorkBook.h | 9 readxl-1.2.0/readxl/src/XlsxWorkSheet.cpp | 5 readxl-1.2.0/readxl/src/XlsxWorkSheet.h | 38 - readxl-1.2.0/readxl/src/cran.c |only readxl-1.2.0/readxl/src/cran.h | 22 readxl-1.2.0/readxl/src/endian.c | 59 - readxl-1.2.0/readxl/src/libxls/brdb.c.h | 52 - readxl-1.2.0/readxl/src/libxls/brdb.h | 52 - readxl-1.2.0/readxl/src/libxls/endian.h | 44 - readxl-1.2.0/readxl/src/libxls/ole.h | 49 - readxl-1.2.0/readxl/src/libxls/xls.h | 48 - readxl-1.2.0/readxl/src/libxls/xlsstruct.h | 80 +- readxl-1.2.0/readxl/src/libxls/xlstool.h | 49 - readxl-1.2.0/readxl/src/libxls/xlstypes.h | 57 - readxl-1.2.0/readxl/src/ole.c | 282 ++++--- readxl-1.2.0/readxl/src/xls.c | 279 +++---- readxl-1.2.0/readxl/src/xlstool.c | 141 ++- readxl-1.2.0/readxl/tests/testthat/helper.R | 4 readxl-1.2.0/readxl/tests/testthat/sheets/names-need-repair-xls.xls |only readxl-1.2.0/readxl/tests/testthat/sheets/names-need-repair-xlsx.xlsx |only readxl-1.2.0/readxl/tests/testthat/sheets/no-styles-or-sharedStrings-parts.xlsx |only readxl-1.2.0/readxl/tests/testthat/test-col-names.R | 117 ++- readxl-1.2.0/readxl/tests/testthat/test-compatibility.R | 10 readxl-1.2.0/readxl/tests/testthat/test-geometry.R | 6 readxl-1.2.0/readxl/tests/testthat/test-missing-values.R | 8 readxl-1.2.0/readxl/tests/testthat/test-read-excel.R | 37 - readxl-1.2.0/readxl/tests/testthat/test-trim-ws.R | 6 readxl-1.2.0/readxl/vignettes/cell-and-column-types.Rmd | 8 readxl-1.2.0/readxl/vignettes/img |only readxl-1.2.0/readxl/vignettes/sheet-geometry.Rmd | 4 68 files changed, 1623 insertions(+), 1142 deletions(-)
Title: Psychometric Modeling Infrastructure
Description: Infrastructure for psychometric modeling such as data classes (for
item response data and paired comparisons), basic model fitting functions (for
Bradley-Terry, Rasch, parametric logistic IRT, generalized partial credit,
rating scale, multinomial processing tree models), extractor functions for
different types of parameters (item, person, threshold, discrimination,
guessing, upper asymptotes), unified inference and visualizations, and various
datasets for illustration. Intended as a common lightweight and efficient
toolbox for psychometric modeling and a common building block for fitting
psychometric mixture models in package "psychomix" and trees based on
psychometric models in package "psychotree".
Author: Achim Zeileis [aut, cre] (<https://orcid.org/0000-0003-0918-3766>),
Carolin Strobl [aut],
Florian Wickelmaier [aut],
Basil Komboz [aut],
Julia Kopf [aut],
Lennart Schneider [aut],
Rudolf Debelak [aut]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between psychotools versions 0.4-3 dated 2018-05-17 and 0.5-0 dated 2018-12-19
DESCRIPTION | 37 - MD5 | 92 ++- NAMESPACE | 80 +++ NEWS | 37 + R/gpcmodel.R |only R/graphics.R | 345 ++++++++++---- R/guesspar.R |only R/mptmodel.R | 6 R/pcmodel.R | 138 ++++- R/plmodel.R |only R/raschmodel.R | 126 ++++- R/rsmodel.R | 134 ++++- R/upperpar.R |only R/zzz.R | 22 build/partial.rdb |binary data/ConspiracistBeliefs2016.rda |only data/FirstNames.rda |binary data/GermanParties2009.rda |binary data/MathExam14W.rda |binary data/MemoryDeficits.rda |binary data/PairClustering.rda |binary data/Sim3PL.rda |only data/SoundQuality.rda |binary data/SourceMonitoring.rda |binary data/StereotypeThreat.rda |binary data/VerbalAggression.rda |binary data/YouthGratitude.rda |binary man/ConspiracistBeliefs2016.Rd |only man/Sim3PL.Rd |only man/StereotypeThreat.Rd | 2 man/VerbalAggression.Rd | 4 man/btmodel.Rd | 4 man/curveplot.Rd | 71 +-- man/discrpar.Rd | 106 ++-- man/gpcmodel.Rd |only man/guesspar.Rd |only man/infoplot.Rd | 106 ++-- man/itempar.Rd | 108 ++-- man/mptmodel.Rd | 5 man/pcmodel.Rd | 17 man/personpar.Rd | 175 +++++-- man/piplot.Rd | 82 ++- man/plmodel.Rd |only man/plot.raschmodel.Rd | 18 man/predict.pcmodel.Rd | 95 ++-- man/profileplot.Rd | 103 ++-- man/raschmodel.Rd | 6 man/regionplot.Rd | 109 ++-- man/rsmodel.Rd | 11 man/threshpar.Rd | 174 ++++--- man/upperpar.Rd |only man/worth.Rd | 7 tests/Examples/psychotools-Ex.Rout.save | 739 +++++++++++++++++++++++--------- 53 files changed, 2007 insertions(+), 952 deletions(-)
Title: Interactive Viewing of Spatial Data in R
Description: Quickly and conveniently create interactive
visualisations of spatial data with or without background maps.
Attributes of displayed features are fully queryable via pop-up
windows. Additional functionality includes methods to visualise true-
and false-color raster images, bounding boxes, small multiples and 3D
raster data cubes.
Author: Tim Appelhans [cre, aut],
Florian Detsch [aut],
Christoph Reudenbach [aut],
Stefan Woellauer [aut],
Spaska Forteva [ctb],
Thomas Nauss [ctb],
Edzer Pebesma [ctb],
Kenton Russell [ctb],
Michael Sumner [ctb],
Jochen Darley [ctb],
Pierre Roudier [ctb],
Patrick Schratz [ctb],
Environmental Informatics Marburg [ctb]
Maintainer: Tim Appelhans <tim.appelhans@gmail.com>
Diff between mapview versions 2.6.0 dated 2018-09-16 and 2.6.3 dated 2018-12-19
DESCRIPTION | 14 +++++----- MD5 | 30 ++++++++++----------- NAMESPACE | 9 +++++- NEWS | 10 +++++++ NEWS.md | 10 +++++++ R/AAAmapviewClasses.R | 1 R/cubeView.R | 12 +++++--- R/legend.R | 16 +++++++---- R/mapView.R | 2 - R/mapview-package.R | 1 R/plainView.R | 22 +++++++++++----- R/print.R | 7 ++++- R/sf.R | 5 ++- R/slideView.R | 48 +++++++++++++++++++++++------------ inst/htmlwidgets/lib/popup/popup.css | 2 - man/plainView.Rd | 3 +- 16 files changed, 131 insertions(+), 61 deletions(-)
Title: Convenient Functions for Ensemble Time Series Forecasts
Description: Convenient functions for ensemble forecasts in R combining
approaches from the 'forecast' package. Forecasts generated from auto.arima(), ets(),
thetam(), nnetar(), stlm(), and tbats() can be combined with equal weights, weights
based on in-sample errors (introduced by Bates & Granger (1969) <doi:10.1057/jors.1969.103>), or cross-validated weights. Cross
validation for time series data with user-supplied models and forecasting
functions is also supported to evaluate model accuracy.
Author: David Shaub [aut, cre],
Peter Ellis [aut]
Maintainer: David Shaub <davidshaub@gmx.com>
Diff between forecastHybrid versions 3.0.14 dated 2018-07-22 and 4.1.16 dated 2018-12-19
DESCRIPTION | 12 +- MD5 | 50 ++++++------ R/cvts.R | 120 +++++++++++++++++------------ R/forecast.hybridModel.R | 27 +++--- R/generics.R | 16 +-- R/helper.R | 10 +- R/hybridModel.R | 26 +++--- R/theta.R | 2 inst/NEWS.md | 15 +++ inst/doc/forecastHybrid.R | 6 - inst/doc/forecastHybrid.Rmd | 22 ++--- inst/doc/forecastHybrid.html | 78 +++++++++--------- man/checkParallelArguments.Rd | 2 man/cvts.Rd | 24 +++-- man/forecast.hybridModel.Rd | 9 +- man/forecast.thetam.Rd | 4 man/hybridModel.Rd | 14 +-- man/plot.hybridModel.Rd | 4 man/prepareTimeseries.Rd | 6 - man/removeModels.Rd | 2 man/thetam.Rd | 2 man/tsSubsetWithIndices.Rd | 2 tests/testthat/test-cvts.R | 24 +++++ tests/testthat/test-forecast.hybridModel.R | 89 ++++++++++++++++++++- tests/testthat/test-hybridModel.R | 42 ++++++++-- vignettes/forecastHybrid.Rmd | 22 ++--- 26 files changed, 401 insertions(+), 229 deletions(-)
More information about forecastHybrid at CRAN
Permanent link
Title: EXIF Image Data in R
Description: Reads EXIF data using ExifTool <http://www.sno.phy.queensu.ca/~phil/exiftool/>
and returns results as a data frame.
ExifTool is a platform-independent Perl library plus a command-line
application for reading, writing and editing meta information in a wide variety
of files. ExifTool supports many different metadata formats including EXIF,
GPS, IPTC, XMP, JFIF, GeoTIFF, ICC Profile, Photoshop IRB, FlashPix, AFCP and
ID3, as well as the maker notes of many digital cameras by Canon, Casio, FLIR,
FujiFilm, GE, HP, JVC/Victor, Kodak, Leaf, Minolta/Konica-Minolta, Motorola, Nikon,
Nintendo, Olympus/Epson, Panasonic/Leica, Pentax/Asahi, Phase One, Reconyx, Ricoh,
Samsung, Sanyo, Sigma/Foveon and Sony.
Author: Dewey Dunnington [aut, cre] (<https://orcid.org/0000-0002-9415-4582>),
Phil Harvey [aut]
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between exifr versions 0.2.2 dated 2018-08-19 and 0.3.0 dated 2018-12-19
exifr-0.2.2/exifr/R/read_exif_old.R |only exifr-0.2.2/exifr/man/exifr.Rd |only exifr-0.2.2/exifr/man/exiftool.call.Rd |only exifr-0.2.2/exifr/tests/testthat/test_read_exif_old.R |only exifr-0.3.0/exifr/DESCRIPTION | 21 - exifr-0.3.0/exifr/MD5 | 22 - exifr-0.3.0/exifr/NAMESPACE | 4 exifr-0.3.0/exifr/R/load_hook.R | 8 exifr-0.3.0/exifr/R/read_exif.R | 63 ---- exifr-0.3.0/exifr/R/utils.R | 250 ++++++++++++++---- exifr-0.3.0/exifr/man/configure_exiftool.Rd | 3 exifr-0.3.0/exifr/man/exiftool_call.Rd | 7 exifr-0.3.0/exifr/tests/testthat/test_read_exif.R | 25 + exifr-0.3.0/exifr/tests/testthat/test_utils.R | 36 ++ 14 files changed, 294 insertions(+), 145 deletions(-)
Title: Exploratory Chemometrics for Spectroscopy
Description: A collection of functions for top-down exploratory data analysis
of spectral data including nuclear magnetic resonance (NMR), infrared (IR),
Raman, X-ray fluorescence (XRF) and other similar types of spectroscopy.
Includes functions for plotting and inspecting spectra, peak alignment,
hierarchical cluster analysis (HCA), principal components analysis (PCA) and
model-based clustering. Robust methods appropriate for this type of
high-dimensional data are available. ChemoSpec is designed for structured
experiments, such as metabolomics investigations, where the samples fall into
treatment and control groups. Graphical output is formatted consistently for
publication quality plots. ChemoSpec is intended to be very user friendly and
to help you get usable results quickly. A vignette covering typical operations
is available.
Author: Bryan A. Hanson [aut, cre] (ORCID 0000-0003-3536-8246),
Mike Bostock [cph, ctb] (author of the d3.js library used by
plotSpectraJS, http://d3js.org),
Matt Keinsley [ctb] (author of initial AOV-PCA code)
Maintainer: Bryan A. Hanson <hanson@depauw.edu>
Diff between ChemoSpec versions 5.0.207 dated 2018-11-28 and 5.0.225 dated 2018-12-19
DESCRIPTION | 10 ++++----- MD5 | 25 +++++++++++++---------- NAMESPACE | 1 NEWS.md | 11 ++++++++++ R/cleanArgs.R |only R/files2SpectraObject.R | 48 +++++++++++++-------------------------------- R/r_pcaSpectra.R | 3 +- build/vignette.rds |binary inst/doc/ChemoSpec.Rmd | 2 - inst/doc/ChemoSpec.pdf |binary man/files2SpectraObject.Rd | 13 +++++++----- man/r_pcaSpectra.Rd | 1 tests |only vignettes/ChemoSpec.Rmd | 2 - 14 files changed, 58 insertions(+), 58 deletions(-)
Title: Using KEEL in R Code
Description: 'KEEL' is a popular Java software for a large number of different knowledge data discovery tasks.
This package takes the advantages of 'KEEL' and R, allowing to use 'KEEL' algorithms in simple R code.
The implemented R code layer between R and 'KEEL' makes easy both using 'KEEL' algorithms in R as implementing new algorithms for 'RKEEL' in a very simple way.
It includes more than 100 algorithms for classification, regression, preprocess, association rules and imbalance learning, which allows a more complete experimentation process.
For more information about KEEL, see <http://www.keel.es/>.
Author: Jose M. Moyano [aut, cre],
Luciano Sanchez Ramos [aut],
Oliver Sanchez Marin [ctb]
Maintainer: Jose M. Moyano <jmoyano@uco.es>
Diff between RKEEL versions 1.2.3 dated 2018-09-25 and 1.2.5 dated 2018-12-19
DESCRIPTION | 10 MD5 | 30 R/AssociationRulesAlgorithm.R | 1064 +++++++++++++++--------------- R/AssociativeClassificationAlgorithm.R | 165 ++-- R/CBA-C.R |only R/CMAR-C.R |only R/CPAR-C.R |only R/ClassificationAlgorithm.R | 53 + R/KeelAlgorithm.R | 213 ++---- R/PreprocessAlgorithm.R | 49 + R/RegressionAlgorithm.R | 46 + man/AssociationRulesAlgorithm.Rd | 5 man/AssociativeClassificationAlgorithm.Rd | 23 man/CBA-C.Rd |only man/CMAR-C.Rd |only man/CPAR-C.Rd |only man/ClassificationAlgorithm.Rd | 25 man/PreprocessAlgorithm.Rd | 25 man/RegressionAlgorithm.Rd | 25 19 files changed, 938 insertions(+), 795 deletions(-)
Title: Downloads Box Office Information for Given Dates
Description: Download daily box office information (how much each movie earned
in theaters) using data from either Box Office Mojo (<http://www.boxofficemojo.com/>) or
The Numbers (<http://www.the-numbers.com/>).
Author: Jacob Kaplan [aut, cre]
Maintainer: Jacob Kaplan <jkkaplan6@gmail.com>
Diff between boxoffice versions 1.1.0 dated 2018-03-23 and 1.2.0 dated 2018-12-19
boxoffice-1.1.0/boxoffice/README.md |only boxoffice-1.1.0/boxoffice/inst/doc/Using-boxoffice.R |only boxoffice-1.1.0/boxoffice/inst/doc/Using-boxoffice.Rmd |only boxoffice-1.1.0/boxoffice/inst/doc/Using-boxoffice.html |only boxoffice-1.1.0/boxoffice/vignettes/Using-boxoffice.Rmd |only boxoffice-1.2.0/boxoffice/DESCRIPTION | 8 boxoffice-1.2.0/boxoffice/MD5 | 41 +- boxoffice-1.2.0/boxoffice/NAMESPACE | 1 boxoffice-1.2.0/boxoffice/NEWS.md | 5 boxoffice-1.2.0/boxoffice/R/main_function.R | 13 boxoffice-1.2.0/boxoffice/R/top_grossing.R |only boxoffice-1.2.0/boxoffice/R/utils.R | 1 boxoffice-1.2.0/boxoffice/build/vignette.rds |binary boxoffice-1.2.0/boxoffice/inst/doc/get_daily_box_office_info.R |only boxoffice-1.2.0/boxoffice/inst/doc/get_daily_box_office_info.Rmd |only boxoffice-1.2.0/boxoffice/inst/doc/get_daily_box_office_info.html |only boxoffice-1.2.0/boxoffice/inst/doc/top_grossing.R |only boxoffice-1.2.0/boxoffice/inst/doc/top_grossing.Rmd |only boxoffice-1.2.0/boxoffice/inst/doc/top_grossing.html |only boxoffice-1.2.0/boxoffice/man/boxoffice.Rd | 4 boxoffice-1.2.0/boxoffice/man/top_grossing.Rd |only boxoffice-1.2.0/boxoffice/tests/testthat/setup.R |only boxoffice-1.2.0/boxoffice/tests/testthat/test-column-names.R | 8 boxoffice-1.2.0/boxoffice/tests/testthat/test-column-types.R | 7 boxoffice-1.2.0/boxoffice/tests/testthat/test-column-values.R | 149 +++++----- boxoffice-1.2.0/boxoffice/tests/testthat/test-dimmensions.R | 10 boxoffice-1.2.0/boxoffice/tests/testthat/test-errors-silent.R | 1 boxoffice-1.2.0/boxoffice/tests/testthat/test-top_grossing.R |only boxoffice-1.2.0/boxoffice/vignettes/get_daily_box_office_info.Rmd |only boxoffice-1.2.0/boxoffice/vignettes/top_grossing.Rmd |only 30 files changed, 132 insertions(+), 116 deletions(-)
Title: Canadian Forest Fire Danger Rating System
Description: This project provides a group of new functions to calculate the
outputs of the two main components of the Canadian Forest Fire Danger Rating
System (CFFDRS) at various time scales: the Fire Weather Index (FWI) System and
the Fire Behaviour Prediction (FBP) System. Some functions have two versions,
table and raster based.
Author: Xianli Wang, Alan Cantin, Marc-André Parisien, Mike Wotton, Kerry
Anderson, Brett Moore, Tom Schiks, and Mike Flannigan
Maintainer: Alan Cantin <Alan.Cantin@Canada.ca>
Diff between cffdrs versions 1.8.1 dated 2018-10-09 and 1.8.4 dated 2018-12-19
DESCRIPTION | 15 +++++++-------- MD5 | 10 +++++----- R/FBPcalc.r | 2 +- R/fireSeason.r | 28 ++++++++++++++++------------ man/cffdrs-package.Rd | 4 ++-- man/fireSeason.Rd | 9 +++++++-- 6 files changed, 38 insertions(+), 30 deletions(-)
Title: Visually Assessing the Specificity and Informativeness of Primer
Pairs
Description: Identifies potential target sequences for a given set of primers
and generates phylogenetic trees annotated with the taxonomies of the predicted
amplification products.
Author: Jim Hester
Maintainer: Jim Hester <james.f.hester@gmail.com>
Diff between primerTree versions 1.0.3 dated 2016-01-12 and 1.0.4 dated 2018-12-19
DESCRIPTION | 13 ++- MD5 | 61 +++++++++--------- NAMESPACE | 6 + R/filterResults.R | 14 ++-- R/plot.R | 7 ++ R/primerTree.R | 134 ++++++++++++++++++++++++++++++++++++++-- R/search.R | 15 ++-- R/sequence.R | 2 R/taxonomy.R | 10 +- man/accession2gi.Rd | 1 man/bryophytes_trnL.Rd | 1 man/calc_rank_dist_ave.Rd |only man/clustalo.Rd | 1 man/filter_seqs.Rd | 2 man/get_sequence.Rd | 1 man/get_sequences.Rd | 1 man/get_taxonomy.Rd | 1 man/gi2taxid.Rd | 1 man/identify.primerTree_plot.Rd | 1 man/layout_tree_ape.Rd | 1 man/mammals_16S.Rd | 1 man/parse_primer_hits.Rd |only man/plot.primerTree.Rd | 1 man/plot_tree.Rd | 1 man/plot_tree_ranks.Rd | 1 man/primerTree.Rd | 1 man/primer_search.Rd | 3 man/search_primer_pair.Rd | 5 - man/seq_lengths.Rd | 1 man/seq_lengths.primerTree.Rd | 1 man/summary.primerTree.Rd | 1 man/tree_from_alignment.Rd | 1 src/init.c |only 33 files changed, 208 insertions(+), 82 deletions(-)
Title: Load Data from 'MyTarget API'
Description: Allows work with 'MyTarget API v2' <https://target.my.com/doc/apiv2/ru/detailed.html> and
load data by ads, campaigns, agency clients and statistic from
your ads account.
Author: Alexey Seleznev
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rmytarget versions 2.0.1 dated 2018-11-21 and 2.1.0 dated 2018-12-19
DESCRIPTION | 8 ++--- MD5 | 17 ++++++----- R/myTarGetAdList.R | 16 +++++++++- R/myTarGetCampaignList.R | 15 ++++++++-- R/myTarGetStats.R | 7 ++-- README |only build/partial.rdb |binary man/myTarGetAdList.Rd | 7 +++- man/myTarGetCampaignList.Rd | 6 +++- man/myTarGetStats.Rd | 66 +++++++++++++++++++++++--------------------- 10 files changed, 89 insertions(+), 53 deletions(-)
Title: Functions Supporting Packages ChemoSpec and ChemoSpec2D
Description: Functions supporting the common needs of packages 'ChemoSpec' and 'ChemoSpec2D'.
Author: Bryan A. Hanson [aut, cre] (ORCID 0000-0003-3536-8246)
Maintainer: Bryan A. Hanson <hanson@depauw.edu>
Diff between ChemoSpecUtils versions 0.2.163 dated 2018-11-28 and 0.2.204 dated 2018-12-19
ChemoSpecUtils-0.2.163/ChemoSpecUtils/R/plotScree.prcomp.R |only ChemoSpecUtils-0.2.204/ChemoSpecUtils/DESCRIPTION | 8 ChemoSpecUtils-0.2.204/ChemoSpecUtils/MD5 | 24 +- ChemoSpecUtils-0.2.204/ChemoSpecUtils/NAMESPACE | 2 ChemoSpecUtils-0.2.204/ChemoSpecUtils/NEWS.md | 15 + ChemoSpecUtils-0.2.204/ChemoSpecUtils/R/chkArgs.R | 20 + ChemoSpecUtils-0.2.204/ChemoSpecUtils/R/hcaScores.R | 2 ChemoSpecUtils-0.2.204/ChemoSpecUtils/R/plotScores.R | 2 ChemoSpecUtils-0.2.204/ChemoSpecUtils/R/plotScree.default.R |only ChemoSpecUtils-0.2.204/ChemoSpecUtils/R/updateGroups.R | 8 ChemoSpecUtils-0.2.204/ChemoSpecUtils/man/hcaScores.Rd | 2 ChemoSpecUtils-0.2.204/ChemoSpecUtils/man/plotScores.Rd | 2 ChemoSpecUtils-0.2.204/ChemoSpecUtils/man/updateGroups.Rd | 1 ChemoSpecUtils-0.2.204/ChemoSpecUtils/tests/testthat/test-all.R | 119 +++++++++- 14 files changed, 165 insertions(+), 40 deletions(-)
More information about ChemoSpecUtils at CRAN
Permanent link
Title: Nonparametric Bounds for the Average Causal Effect Due to Balke
and Pearl and Extensions
Description: Implementation of the nonparametric bounds for the average causal
effect under an instrumental variable model by Balke and Pearl (Bounds on
Treatment Effects from Studies with Imperfect Compliance, JASA, 1997, 92,
439, 1171-1176). The package can calculate bounds for a binary outcome, a
binary treatment/phenotype, and an instrument with either 2 or 3
categories. The package implements bounds for situations where these 3
variables are measured in the same dataset (trivariate data) or where the
outcome and instrument are measured in one study and the
treatment/phenotype and instrument are measured in another study
(bivariate data).
Author: Tom Palmer [aut, cre] (<https://orcid.org/0000-0003-4655-4511>),
Roland Ramsahai [aut],
Vanessa Didelez [aut] (<https://orcid.org/0000-0001-8587-7706>),
Nuala Sheehan [aut]
Maintainer: Tom Palmer <tom.palmer@lancaster.ac.uk>
Diff between bpbounds versions 0.1.0 dated 2018-11-18 and 0.1.1 dated 2018-12-19
DESCRIPTION | 10 MD5 | 46 - NAMESPACE | 13 NEWS.md |only R/bpbounds.R | 651 +++++++++++----------- R/bpbounds_biv_x2y2z2.R | 133 ++-- R/bpbounds_biv_x2y2z3.R | 135 ++-- R/bpbounds_calc_biv_z2.R | 77 +- R/bpbounds_calc_biv_z3.R | 151 +++-- R/bpbounds_calc_tri_z2.R | 52 + R/bpbounds_calc_tri_z3.R | 147 +++-- R/bpbounds_tri_x2y2z2.R | 120 ++-- R/bpbounds_tri_x2y2z3.R | 507 ++++++++++++----- R/runExample.R |only README.md | 54 + build/vignette.rds |binary inst/CITATION | 34 - inst/doc/bpbounds.R | 202 +++---- inst/doc/bpbounds.Rmd | 368 ++++++------ inst/doc/bpbounds.html | 1166 ++++++++++++++++++++--------------------- inst/shiny-examples |only man/bpbounds-package.Rd | 42 - man/bpbounds.Rd | 238 ++++---- man/runExample.Rd |only tests/testthat/test-bpbounds.R | 591 ++++++++++---------- vignettes/bpbounds.Rmd | 368 ++++++------ 26 files changed, 2841 insertions(+), 2264 deletions(-)
Title: Optimal Bayesian Experimental Design using the ACE Algorithm
Description: Optimal Bayesian experimental design using the approximate coordinate exchange (ACE) algorithm.
Author: Antony M. Overstall, David C. Woods & Maria Adamou
Maintainer: Antony M. Overstall <A.M.Overstall@soton.ac.uk>
Diff between acebayes versions 1.5.2 dated 2018-11-21 and 1.6.0 dated 2018-12-19
DESCRIPTION | 14 +++++++------- MD5 | 18 +++++++++--------- R/acebayes.R | 48 ++++++++++++++++++++++++++++++------------------ inst/doc/acebayes.pdf |binary man/ace.Rd | 4 ++-- man/acebayes-package.Rd | 6 +++--- man/aceglm.Rd | 8 ++++---- man/acenlm.Rd | 20 ++++++++++---------- man/aceobjects.Rd | 2 -- man/assess.Rd | 2 +- 10 files changed, 66 insertions(+), 56 deletions(-)
Title: Oceanographic Data Sets for 'oce' Package
Description: Several important and Oceanographic data sets are provided. These
are particularly useful to the 'oce' package, but can also be helpful in a
general context.
Author: Dan Kelley [aut, cre] (<https://orcid.org/0000-0001-7808-5911>)
Maintainer: Dan Kelley <Dan.Kelley@Dal.Ca>
Diff between ocedata versions 0.1.3 dated 2015-05-17 and 0.1.5 dated 2018-12-19
ocedata-0.1.3/ocedata/data/airHalifax.rda |only ocedata-0.1.3/ocedata/man/airHalifax.Rd |only ocedata-0.1.5/ocedata/DESCRIPTION | 28 +++-- ocedata-0.1.5/ocedata/MD5 | 103 ++++++++++---------- ocedata-0.1.5/ocedata/NAMESPACE | 3 ocedata-0.1.5/ocedata/NEWS | 10 + ocedata-0.1.5/ocedata/README.md |only ocedata-0.1.5/ocedata/data/RRprofile.rda |binary ocedata-0.1.5/ocedata/data/beaufort.rda |binary ocedata-0.1.5/ocedata/data/buoy.rda |binary ocedata-0.1.5/ocedata/data/coastlineWorldFine.rda |binary ocedata-0.1.5/ocedata/data/coastlineWorldMedium.rda |binary ocedata-0.1.5/ocedata/data/conveyor.rda |binary ocedata-0.1.5/ocedata/data/datalist | 3 ocedata-0.1.5/ocedata/data/drag.rda |binary ocedata-0.1.5/ocedata/data/endeavour.rda |binary ocedata-0.1.5/ocedata/data/geosecs235.rda |binary ocedata-0.1.5/ocedata/data/giss.rda |binary ocedata-0.1.5/ocedata/data/gs.rda |binary ocedata-0.1.5/ocedata/data/levitus.rda |binary ocedata-0.1.5/ocedata/data/munk.rda |binary ocedata-0.1.5/ocedata/data/nao.rda |binary ocedata-0.1.5/ocedata/data/oceans.rda |binary ocedata-0.1.5/ocedata/data/papa.rda |binary ocedata-0.1.5/ocedata/data/redfieldNC.rda |binary ocedata-0.1.5/ocedata/data/redfieldNP.rda |binary ocedata-0.1.5/ocedata/data/redfieldPlankton.rda |binary ocedata-0.1.5/ocedata/data/riley.rda |binary ocedata-0.1.5/ocedata/data/schmitt.rda |binary ocedata-0.1.5/ocedata/data/secchi.rda |binary ocedata-0.1.5/ocedata/data/soi.rda |binary ocedata-0.1.5/ocedata/data/topo2.rda |binary ocedata-0.1.5/ocedata/data/turbulence.rda |binary ocedata-0.1.5/ocedata/data/wilson.rda |binary ocedata-0.1.5/ocedata/man/RRprofile.Rd | 2 ocedata-0.1.5/ocedata/man/beaufort.Rd | 2 ocedata-0.1.5/ocedata/man/buoy.Rd | 30 +++-- ocedata-0.1.5/ocedata/man/conveyor.Rd | 2 ocedata-0.1.5/ocedata/man/endeavour.Rd | 2 ocedata-0.1.5/ocedata/man/geosecs235.Rd | 10 + ocedata-0.1.5/ocedata/man/giss.Rd | 71 +++++++++---- ocedata-0.1.5/ocedata/man/gs.Rd | 5 ocedata-0.1.5/ocedata/man/levitus.Rd | 69 +++++-------- ocedata-0.1.5/ocedata/man/nao.Rd | 9 + ocedata-0.1.5/ocedata/man/oceans.Rd | 2 ocedata-0.1.5/ocedata/man/papa.Rd | 38 ++++--- ocedata-0.1.5/ocedata/man/redfieldNP.Rd | 2 ocedata-0.1.5/ocedata/man/redfieldPlankton.Rd | 8 - ocedata-0.1.5/ocedata/man/riley.Rd | 6 - ocedata-0.1.5/ocedata/man/secchi.Rd | 4 ocedata-0.1.5/ocedata/man/soi.Rd | 37 +++---- ocedata-0.1.5/ocedata/man/topo2.Rd | 31 +++--- ocedata-0.1.5/ocedata/man/wilson.Rd | 3 ocedata-0.1.5/ocedata/tests |only 54 files changed, 262 insertions(+), 218 deletions(-)
Title: Inference of Linear Mixed Models Through MM Algorithm
Description: The main function MMEst() performs (Restricted) Maximum Likelihood in a variance component mixed models using a Min-Max (MM) algorithm (Hunter, D. R., & Lange, K. (2004) <doi:10.1198/0003130042836>).
Author: Fabien Laporte, Tristan Mary-Huard
Maintainer: Fabien Laporte <fabien.laporte@inra.fr>
Diff between MM4LMM versions 1.0.5 dated 2018-05-31 and 1.1.4 dated 2018-12-19
DESCRIPTION | 8 MD5 | 39 +- R/AnovaTest.R | 59 ++-- R/MM4LMM-internal.R | 509 ++++++++++++++++++++++++++++++++------ R/MMEst.R | 98 +++---- R/RcppExports.R | 27 +- data/QTLDetectionExample.rda |binary data/VarianceComponentExample.rda |binary man/AnovaTest.Rd | 164 ++++++------ man/MM4LMM-package.Rd | 82 +++--- man/MMEst.Rd | 359 +++++++++++++------------- man/VarianceComponentExample.Rd | 100 +++---- src/All.cpp | 30 +- src/MLMM.h | 9 src/MLMM2Mat.h | 10 src/RcppExports.cpp | 81 +++--- src/RemlMM.h | 10 src/RemlMM1Mat.h |only src/RemlMM2Mat.h | 23 + src/RemlMMHen.h | 10 src/RemlMMHenDiag.h | 12 21 files changed, 1031 insertions(+), 599 deletions(-)
Title: Data Science Labs
Description: Datasets and functions that can be used for data analysis practice, homework and projects in data science courses and workshops.
Author: Rafael A. Irizarry
Maintainer: Rafael A. Irizarry <rafa@jimmy.harvard.edu>
Diff between dslabs versions 0.5.1 dated 2018-10-15 and 0.5.2 dated 2018-12-19
DESCRIPTION | 6 +++--- MD5 | 6 +++--- data/polls_us_election_2016.rda |binary inst/script/make-polls_us_election_2016.R | 4 +++- 4 files changed, 9 insertions(+), 7 deletions(-)
Title: A Tidy Tool for Phylogenetic Tree Data Manipulation
Description: Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.
Author: Guangchuang Yu [aut, cre, cph]
(<https://orcid.org/0000-0002-6485-8781>),
Bradley Jones [ctb],
Zebulun Arendsee [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between tidytree versions 0.2.0 dated 2018-11-29 and 0.2.1 dated 2018-12-19
tidytree-0.2.0/tidytree/R/as-data-frame.R |only tidytree-0.2.1/tidytree/DESCRIPTION | 10 tidytree-0.2.1/tidytree/MD5 | 87 - tidytree-0.2.1/tidytree/NAMESPACE | 165 +- tidytree-0.2.1/tidytree/NEWS | 96 - tidytree-0.2.1/tidytree/NEWS.md | 39 tidytree-0.2.1/tidytree/R/AllClasses.R | 128 - tidytree-0.2.1/tidytree/R/AllGenerics.R | 326 ++-- tidytree-0.2.1/tidytree/R/ancestor.R | 240 +-- tidytree-0.2.1/tidytree/R/as-tibble.R |only tidytree-0.2.1/tidytree/R/converter.R | 128 - tidytree-0.2.1/tidytree/R/get-data.R | 46 tidytree-0.2.1/tidytree/R/get-fields.R | 58 tidytree-0.2.1/tidytree/R/groupClade.R | 84 - tidytree-0.2.1/tidytree/R/groupOTU.R | 196 +- tidytree-0.2.1/tidytree/R/mutate.R |only tidytree-0.2.1/tidytree/R/offspring.R | 123 - tidytree-0.2.1/tidytree/R/reexports.R | 114 - tidytree-0.2.1/tidytree/R/show.R | 142 +- tidytree-0.2.1/tidytree/R/sibling.R | 20 tidytree-0.2.1/tidytree/README.md | 80 - tidytree-0.2.1/tidytree/build/vignette.rds |binary tidytree-0.2.1/tidytree/inst/doc/tidytree.R | 114 - tidytree-0.2.1/tidytree/inst/doc/tidytree.Rmd | 367 ++--- tidytree-0.2.1/tidytree/inst/doc/tidytree.html | 654 +++++----- tidytree-0.2.1/tidytree/man/MRCA.Rd | 44 tidytree-0.2.1/tidytree/man/ancestor.Rd | 66 - tidytree-0.2.1/tidytree/man/as.treedata.Rd | 62 tidytree-0.2.1/tidytree/man/child.Rd | 66 - tidytree-0.2.1/tidytree/man/get.data-methods.Rd | 50 tidytree-0.2.1/tidytree/man/get.fields-methods.Rd | 50 tidytree-0.2.1/tidytree/man/get_tree_data.Rd | 40 tidytree-0.2.1/tidytree/man/groupClade.Rd | 48 tidytree-0.2.1/tidytree/man/groupOTU.Rd | 48 tidytree-0.2.1/tidytree/man/offspring.Rd | 66 - tidytree-0.2.1/tidytree/man/parent.Rd | 66 - tidytree-0.2.1/tidytree/man/reexports.Rd | 72 - tidytree-0.2.1/tidytree/man/rootnode.Rd | 44 tidytree-0.2.1/tidytree/man/show-methods.Rd | 42 tidytree-0.2.1/tidytree/man/sibling.Rd | 44 tidytree-0.2.1/tidytree/man/treedata-class.Rd | 84 - tidytree-0.2.1/tidytree/man/treedata.Rd | 40 tidytree-0.2.1/tidytree/tests/testthat.R | 8 tidytree-0.2.1/tidytree/tests/testthat/test-access-related-nodes.R | 228 +-- tidytree-0.2.1/tidytree/tests/testthat/test-grouping.R | 62 tidytree-0.2.1/tidytree/vignettes/tidytree.Rmd | 367 ++--- 46 files changed, 2411 insertions(+), 2403 deletions(-)
Title: Structural Equation and Twin Modeling in R
Description: Quickly create, run, and report structural equation and twin models.
See '?umx' for help, and file.show(system.file("NEWS", package="umx")) for NEWS.
Author: Timothy C Bates [aut, cre] (<https://orcid.org/0000-0002-1153-9007>)
Maintainer: Timothy C Bates <timothy.c.bates@gmail.com>
Diff between umx versions 2.8.5 dated 2018-10-06 and 2.9.0 dated 2018-12-19
umx-2.8.5/umx/R/build_run_modify.r |only umx-2.8.5/umx/R/deprecated.r |only umx-2.8.5/umx/R/fit_and_reporting.r |only umx-2.8.5/umx/R/misc_and_utility.r |only umx-2.8.5/umx/R/tmx.r |only umx-2.8.5/umx/R/umx_build_high_level_models.r |only umx-2.8.5/umx/R/umx_fit_umxFitIndices.r |only umx-2.8.5/umx/R/xmu.r |only umx-2.8.5/umx/R/xmu_make_top.R |only umx-2.8.5/umx/man/figures/ACE.png |only umx-2.8.5/umx/man/figures/ACE_full_univariate.pdf |only umx-2.8.5/umx/man/figures/ACE_full_univariate.png |only umx-2.8.5/umx/man/figures/umxLatent.graffle |only umx-2.8.5/umx/man/figures/umx_help_figures |only umx-2.8.5/umx/man/xmuMakeThresholdsMatrices.Rd |only umx-2.8.5/umx/man/xmu_make_top.Rd |only umx-2.9.0/umx/DESCRIPTION | 16 umx-2.9.0/umx/MD5 | 519 +++++++-------- umx-2.9.0/umx/NAMESPACE | 8 umx-2.9.0/umx/NEWS.md | 38 + umx-2.9.0/umx/R/build_run_modify.R |only umx-2.9.0/umx/R/datasets.R | 7 umx-2.9.0/umx/R/deprecated.R |only umx-2.9.0/umx/R/fit_and_reporting.R |only umx-2.9.0/umx/R/misc_and_utility.R |only umx-2.9.0/umx/R/tmx.R |only umx-2.9.0/umx/R/umxACEnew.R |only umx-2.9.0/umx/R/umx_build_high_level_models.R |only umx-2.9.0/umx/R/umx_build_polychoricMatrix3.R | 208 ++---- umx-2.9.0/umx/R/umx_build_umxACEcov_fixed.R | 59 - umx-2.9.0/umx/R/umx_build_umxACEv.R | 513 +++----------- umx-2.9.0/umx/R/umx_build_umxGxEbiv.R | 22 umx-2.9.0/umx/R/umx_build_umxSexLim.R | 64 - umx-2.9.0/umx/R/umx_build_umxSimplex.R | 179 ++--- umx-2.9.0/umx/R/umx_fit_umxFitIndices.R |only umx-2.9.0/umx/R/umx_fit_umxPlotCPnew.R | 89 +- umx-2.9.0/umx/R/xmu.R |only umx-2.9.0/umx/R/xmu_make_top_twin_models.R |only umx-2.9.0/umx/R/xmu_mean_var_starts.R |only umx-2.9.0/umx/README.md | 6 umx-2.9.0/umx/inst/WORDLIST | 87 ++ umx-2.9.0/umx/man/RMSEA.MxModel.Rd | 2 umx-2.9.0/umx/man/RMSEA.Rd | 2 umx-2.9.0/umx/man/RMSEA.summary.mxmodel.Rd | 2 umx-2.9.0/umx/man/dl_from_dropbox.Rd | 2 umx-2.9.0/umx/man/extractAIC.MxModel.Rd | 2 umx-2.9.0/umx/man/figures/ACEcovOnMeans.pdf |only umx-2.9.0/umx/man/figures/ACEmatrix.pdf |only umx-2.9.0/umx/man/figures/ACEmatrix.png |only umx-2.9.0/umx/man/figures/ACEunivariate.pdf |only umx-2.9.0/umx/man/figures/ACEunivariate.png |only umx-2.9.0/umx/man/figures/GxE.pdf |only umx-2.9.0/umx/man/figures/GxEbiv.pdf |only umx-2.9.0/umx/man/figures/formative.pdf |only umx-2.9.0/umx/man/figures/measurement_invariance.graffle |only umx-2.9.0/umx/man/figures/reflective.pdf |only umx-2.9.0/umx/man/figures/simplex.pdf |only umx-2.9.0/umx/man/figures/simplex.png |binary umx-2.9.0/umx/man/figures/sketch.pdf |only umx-2.9.0/umx/man/figures/sketch.png |only umx-2.9.0/umx/man/figures/umxEFA.pdf |only umx-2.9.0/umx/man/figures/umx_help_figures.graffle |binary umx-2.9.0/umx/man/install.OpenMx.Rd | 5 umx-2.9.0/umx/man/iqdat.Rd | 5 umx-2.9.0/umx/man/loadings.MxModel.Rd | 2 umx-2.9.0/umx/man/loadings.Rd | 2 umx-2.9.0/umx/man/plot.MxModel.Rd | 23 umx-2.9.0/umx/man/qm.Rd | 5 umx-2.9.0/umx/man/reliability.Rd | 2 umx-2.9.0/umx/man/residuals.MxModel.Rd | 2 umx-2.9.0/umx/man/tmx_genotypic_effect.Rd | 2 umx-2.9.0/umx/man/tmx_is.identified.Rd | 2 umx-2.9.0/umx/man/umx-deprecated.Rd | 6 umx-2.9.0/umx/man/umx.Rd | 38 - umx-2.9.0/umx/man/umxACE.Rd | 122 ++- umx-2.9.0/umx/man/umxACE_cov_fixed.Rd | 42 - umx-2.9.0/umx/man/umxACEcov.Rd | 50 - umx-2.9.0/umx/man/umxACEnew.Rd |only umx-2.9.0/umx/man/umxACEv.Rd | 129 +-- umx-2.9.0/umx/man/umxAPA.Rd | 10 umx-2.9.0/umx/man/umxAdd1.Rd | 2 umx-2.9.0/umx/man/umxAlgebra.Rd | 13 umx-2.9.0/umx/man/umxBrownie.Rd | 5 umx-2.9.0/umx/man/umxCI.Rd | 2 umx-2.9.0/umx/man/umxCI_boot.Rd | 2 umx-2.9.0/umx/man/umxCP.Rd | 64 - umx-2.9.0/umx/man/umxCPold.Rd | 27 umx-2.9.0/umx/man/umxCompare.Rd | 2 umx-2.9.0/umx/man/umxConfint.Rd | 16 umx-2.9.0/umx/man/umxCov2cor.Rd | 2 umx-2.9.0/umx/man/umxCovData.Rd | 3 umx-2.9.0/umx/man/umxDiagnose.Rd | 4 umx-2.9.0/umx/man/umxDrop1.Rd | 2 umx-2.9.0/umx/man/umxEFA.Rd | 5 umx-2.9.0/umx/man/umxEquate.Rd | 10 umx-2.9.0/umx/man/umxEval.Rd | 4 umx-2.9.0/umx/man/umxExpCov.Rd | 2 umx-2.9.0/umx/man/umxExpMeans.Rd | 2 umx-2.9.0/umx/man/umxFactor.Rd | 5 umx-2.9.0/umx/man/umxFactorScores.Rd | 2 umx-2.9.0/umx/man/umxFitIndices.Rd | 2 umx-2.9.0/umx/man/umxFixAll.Rd | 2 umx-2.9.0/umx/man/umxGetParameters.Rd | 2 umx-2.9.0/umx/man/umxGxE.Rd | 52 - umx-2.9.0/umx/man/umxGxE_window.Rd | 35 - umx-2.9.0/umx/man/umxGxEbiv.Rd | 20 umx-2.9.0/umx/man/umxHetCor.Rd | 3 umx-2.9.0/umx/man/umxIP.Rd | 30 umx-2.9.0/umx/man/umxIPnew.Rd | 57 + umx-2.9.0/umx/man/umxJiggle.Rd | 2 umx-2.9.0/umx/man/umxLabel.Rd | 2 umx-2.9.0/umx/man/umxLatent.Rd | 10 umx-2.9.0/umx/man/umxMI.Rd | 2 umx-2.9.0/umx/man/umxMatrix.Rd | 13 umx-2.9.0/umx/man/umxModel.Rd | 10 umx-2.9.0/umx/man/umxModify.Rd | 16 umx-2.9.0/umx/man/umxPadAndPruneForDefVars.Rd | 3 umx-2.9.0/umx/man/umxPath.Rd | 11 umx-2.9.0/umx/man/umxPlotACE.Rd | 6 umx-2.9.0/umx/man/umxPlotACEcov.Rd | 6 umx-2.9.0/umx/man/umxPlotACEv.Rd | 4 umx-2.9.0/umx/man/umxPlotCP.Rd | 6 umx-2.9.0/umx/man/umxPlotCPnew.Rd | 7 umx-2.9.0/umx/man/umxPlotGxE.Rd | 2 umx-2.9.0/umx/man/umxPlotIP.Rd | 6 umx-2.9.0/umx/man/umxPlotSimplex.Rd | 17 umx-2.9.0/umx/man/umxRAM.Rd | 88 +- umx-2.9.0/umx/man/umxRAM2Ordinal.Rd | 37 - umx-2.9.0/umx/man/umxReduce.Rd | 4 umx-2.9.0/umx/man/umxReduceACE.Rd | 2 umx-2.9.0/umx/man/umxReduceGxE.Rd | 2 umx-2.9.0/umx/man/umxRun.Rd | 11 umx-2.9.0/umx/man/umxSetParameters.Rd | 2 umx-2.9.0/umx/man/umxSexLim.Rd | 28 umx-2.9.0/umx/man/umxSimplex.Rd | 57 + umx-2.9.0/umx/man/umxSummary.MxModel.Rd | 2 umx-2.9.0/umx/man/umxSummary.Rd | 14 umx-2.9.0/umx/man/umxSummaryACE.Rd | 26 umx-2.9.0/umx/man/umxSummaryACEcov.Rd | 16 umx-2.9.0/umx/man/umxSummaryACEv.Rd | 32 umx-2.9.0/umx/man/umxSummaryCP.Rd | 16 umx-2.9.0/umx/man/umxSummaryGxE.Rd | 16 umx-2.9.0/umx/man/umxSummaryGxEbiv.Rd | 16 umx-2.9.0/umx/man/umxSummaryIP.Rd | 16 umx-2.9.0/umx/man/umxSummarySexLim.Rd | 24 umx-2.9.0/umx/man/umxSummarySimplex.Rd | 39 - umx-2.9.0/umx/man/umxSuperModel.Rd | 21 umx-2.9.0/umx/man/umxThresholdMatrix.Rd | 48 - umx-2.9.0/umx/man/umxTwoStage.Rd | 2 umx-2.9.0/umx/man/umxUnexplainedCausalNexus.Rd | 2 umx-2.9.0/umx/man/umxValues.Rd | 2 umx-2.9.0/umx/man/umxVersion.Rd | 5 umx-2.9.0/umx/man/umxWeightedAIC.Rd | 4 umx-2.9.0/umx/man/umx_APA_model_CI.Rd | 2 umx-2.9.0/umx/man/umx_APA_pval.Rd | 2 umx-2.9.0/umx/man/umx_add_variances.Rd | 2 umx-2.9.0/umx/man/umx_aggregate.Rd | 4 umx-2.9.0/umx/man/umx_apply.Rd | 2 umx-2.9.0/umx/man/umx_array_shift.Rd | 5 umx-2.9.0/umx/man/umx_as_numeric.Rd | 7 umx-2.9.0/umx/man/umx_cell_is_on.Rd | 5 umx-2.9.0/umx/man/umx_check.Rd | 2 umx-2.9.0/umx/man/umx_check_OS.Rd | 2 umx-2.9.0/umx/man/umx_check_model.Rd | 4 umx-2.9.0/umx/man/umx_check_names.Rd | 2 umx-2.9.0/umx/man/umx_check_parallel.Rd | 33 umx-2.9.0/umx/man/umx_cont_2_quantiles.Rd | 5 umx-2.9.0/umx/man/umx_cor.Rd | 2 umx-2.9.0/umx/man/umx_cov2raw.Rd | 3 umx-2.9.0/umx/man/umx_default_option.Rd | 2 umx-2.9.0/umx/man/umx_drop_ok.Rd | 2 umx-2.9.0/umx/man/umx_explode.Rd | 2 umx-2.9.0/umx/man/umx_explode_twin_names.Rd | 2 umx-2.9.0/umx/man/umx_find_object.Rd | 5 umx-2.9.0/umx/man/umx_fix_first_loadings.Rd | 2 umx-2.9.0/umx/man/umx_fix_latents.Rd | 2 umx-2.9.0/umx/man/umx_fun_mean_sd.Rd | 2 umx-2.9.0/umx/man/umx_get_bracket_addresses.Rd | 2 umx-2.9.0/umx/man/umx_get_checkpoint.Rd | 2 umx-2.9.0/umx/man/umx_get_options.Rd | 2 umx-2.9.0/umx/man/umx_graphviz_rank.Rd | 5 umx-2.9.0/umx/man/umx_grep.Rd | 2 umx-2.9.0/umx/man/umx_has_CIs.Rd | 2 umx-2.9.0/umx/man/umx_has_been_run.Rd | 2 umx-2.9.0/umx/man/umx_has_means.Rd | 2 umx-2.9.0/umx/man/umx_has_square_brackets.Rd | 2 umx-2.9.0/umx/man/umx_is_MxData.Rd | 2 umx-2.9.0/umx/man/umx_is_MxMatrix.Rd | 2 umx-2.9.0/umx/man/umx_is_MxModel.Rd | 2 umx-2.9.0/umx/man/umx_is_RAM.Rd | 2 umx-2.9.0/umx/man/umx_is_class.Rd | 2 umx-2.9.0/umx/man/umx_is_cov.Rd | 2 umx-2.9.0/umx/man/umx_is_endogenous.Rd | 2 umx-2.9.0/umx/man/umx_is_exogenous.Rd | 2 umx-2.9.0/umx/man/umx_is_numeric.Rd | 2 umx-2.9.0/umx/man/umx_is_ordered.Rd | 2 umx-2.9.0/umx/man/umx_long2wide.Rd | 8 umx-2.9.0/umx/man/umx_lower2full.Rd | 6 umx-2.9.0/umx/man/umx_make.Rd | 19 umx-2.9.0/umx/man/umx_make_MR_data.Rd | 3 umx-2.9.0/umx/man/umx_make_TwinData.Rd | 18 umx-2.9.0/umx/man/umx_make_bin_cont_pair_data.Rd | 3 umx-2.9.0/umx/man/umx_make_fake_data.Rd | 3 umx-2.9.0/umx/man/umx_make_sql_from_excel.Rd | 2 umx-2.9.0/umx/man/umx_mat2dot.Rd | 6 umx-2.9.0/umx/man/umx_means.Rd | 2 umx-2.9.0/umx/man/umx_merge_CIs.Rd | 2 umx-2.9.0/umx/man/umx_move_file.Rd | 2 umx-2.9.0/umx/man/umx_msg.Rd | 11 umx-2.9.0/umx/man/umx_names.Rd | 6 umx-2.9.0/umx/man/umx_object_as_str.Rd | 2 umx-2.9.0/umx/man/umx_open.Rd | 2 umx-2.9.0/umx/man/umx_open_CRAN_page.Rd | 4 umx-2.9.0/umx/man/umx_pad.Rd | 5 umx-2.9.0/umx/man/umx_parameters.Rd | 2 umx-2.9.0/umx/man/umx_paste_names.Rd | 8 umx-2.9.0/umx/man/umx_pb_note.Rd | 4 umx-2.9.0/umx/man/umx_polychoric.Rd | 7 umx-2.9.0/umx/man/umx_polypairwise.Rd | 9 umx-2.9.0/umx/man/umx_polytriowise.Rd | 9 umx-2.9.0/umx/man/umx_print.Rd | 4 umx-2.9.0/umx/man/umx_r_test.Rd | 2 umx-2.9.0/umx/man/umx_read_lower.Rd | 3 umx-2.9.0/umx/man/umx_rename.Rd | 7 umx-2.9.0/umx/man/umx_rename_file.Rd | 2 umx-2.9.0/umx/man/umx_reorder.Rd | 3 umx-2.9.0/umx/man/umx_residualize.Rd | 2 umx-2.9.0/umx/man/umx_rot.Rd | 2 umx-2.9.0/umx/man/umx_round.Rd | 2 umx-2.9.0/umx/man/umx_scale.Rd | 28 umx-2.9.0/umx/man/umx_scale_wide_twin_data.Rd | 2 umx-2.9.0/umx/man/umx_score_scale.Rd |only umx-2.9.0/umx/man/umx_set_auto_plot.Rd | 2 umx-2.9.0/umx/man/umx_set_auto_run.Rd | 2 umx-2.9.0/umx/man/umx_set_checkpoint.Rd | 2 umx-2.9.0/umx/man/umx_set_condensed_slots.Rd | 2 umx-2.9.0/umx/man/umx_set_cores.Rd | 2 umx-2.9.0/umx/man/umx_set_optimization_options.Rd | 2 umx-2.9.0/umx/man/umx_set_optimizer.Rd | 2 umx-2.9.0/umx/man/umx_set_plot_file_suffix.Rd | 2 umx-2.9.0/umx/man/umx_set_plot_format.Rd | 2 umx-2.9.0/umx/man/umx_set_table_format.Rd | 2 umx-2.9.0/umx/man/umx_show.Rd | 2 umx-2.9.0/umx/man/umx_show_fit_or_comparison.Rd | 2 umx-2.9.0/umx/man/umx_stack.Rd | 3 umx-2.9.0/umx/man/umx_standardize.Rd | 2 umx-2.9.0/umx/man/umx_standardize_ACE.Rd | 6 umx-2.9.0/umx/man/umx_standardize_ACEcov.Rd | 2 umx-2.9.0/umx/man/umx_standardize_ACEv.Rd | 8 umx-2.9.0/umx/man/umx_standardize_CP.Rd | 2 umx-2.9.0/umx/man/umx_standardize_IP.Rd | 2 umx-2.9.0/umx/man/umx_standardize_RAM.Rd | 4 umx-2.9.0/umx/man/umx_standardize_Simplex.Rd | 6 umx-2.9.0/umx/man/umx_string_to_algebra.Rd | 2 umx-2.9.0/umx/man/umx_swap_a_block.Rd | 11 umx-2.9.0/umx/man/umx_time.Rd | 2 umx-2.9.0/umx/man/umx_trim.Rd | 2 umx-2.9.0/umx/man/umx_var.Rd | 2 umx-2.9.0/umx/man/umx_wide2long.Rd | 2 umx-2.9.0/umx/man/umx_write_to_clipboard.Rd | 2 umx-2.9.0/umx/man/xmuHasSquareBrackets.Rd | 10 umx-2.9.0/umx/man/xmuLabel_MATRIX_Model.Rd | 10 umx-2.9.0/umx/man/xmuLabel_Matrix.Rd | 10 umx-2.9.0/umx/man/xmuLabel_RAM_Model.Rd | 10 umx-2.9.0/umx/man/xmuMI.Rd | 10 umx-2.9.0/umx/man/xmuMakeDeviationThresholdsMatrices.Rd | 10 umx-2.9.0/umx/man/xmuMakeOneHeadedPathsFromPathList.Rd | 10 umx-2.9.0/umx/man/xmuMakeTwoHeadedPathsFromPathList.Rd | 10 umx-2.9.0/umx/man/xmuMaxLevels.Rd | 10 umx-2.9.0/umx/man/xmuMinLevels.Rd | 10 umx-2.9.0/umx/man/xmuPropagateLabels.Rd | 10 umx-2.9.0/umx/man/xmu_assemble_twin_supermodel.Rd |only umx-2.9.0/umx/man/xmu_check_levels_identical.Rd | 10 umx-2.9.0/umx/man/xmu_dot_make_paths.Rd | 10 umx-2.9.0/umx/man/xmu_dot_make_residuals.Rd | 10 umx-2.9.0/umx/man/xmu_dot_maker.Rd | 12 umx-2.9.0/umx/man/xmu_make_mxData.Rd | 28 umx-2.9.0/umx/man/xmu_make_top_twin_models.Rd |only umx-2.9.0/umx/man/xmu_safe_run_summary.Rd |only umx-2.9.0/umx/man/xmu_set_sep_from_suffix.Rd |only umx-2.9.0/umx/man/xmu_simplex_corner.Rd | 10 umx-2.9.0/umx/man/xmu_start_value_list.Rd | 10 umx-2.9.0/umx/man/xmu_starts.Rd |only umx-2.9.0/umx/man/xmu_twin_check.Rd | 24 284 files changed, 2062 insertions(+), 1890 deletions(-)
Title: Ensemble Empirical Mode Decomposition (EEMD) and Its Complete
Variant (CEEMDAN)
Description: An R interface for libeemd (Luukko, Helske, Räsänen, 2016) <doi:10.1007/s00180-015-0603-9>,
a C library of highly efficient parallelizable functions for performing the ensemble empirical mode decomposition (EEMD),
its complete variant (CEEMDAN), the regular empirical mode decomposition (EMD), and bivariate EMD (BEMD).
Due to the possible portability issues CRAN version no longer supports OpenMP, you can install OpenMP-supported version
from GitHub: <https://github.com/helske/Rlibeemd/>.
Author: Jouni Helske [aut, cre] (R interface,
<https://orcid.org/0000-0001-7130-793X>),
Perttu Luukko [aut] (Original libeemd C library,
<https://orcid.org/0000-0003-3786-9685>)
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between Rlibeemd versions 1.4.0 dated 2017-10-24 and 1.4.1 dated 2018-12-19
.aspell |only ChangeLog | 11 +++ DESCRIPTION | 30 ++++++---- MD5 | 37 ++++++------- R/zzz.R |only inst/CITATION | 51 ++++++++++-------- man/ceemdan.Rd | 5 + src/Makevars.in | 9 ++- src/Makevars.win | 12 ++-- src/ceemdan.c | 13 ++++ src/ceemdanR.cpp | 17 +----- src/eemd.h | 15 ++--- src/eemdR.cpp | 16 ----- src/eemd_routine.c | 14 ++++ src/emd.c | 32 ++++------- src/extras.h | 3 - src/extrema.c | 40 ++++---------- src/extremaR.cpp | 3 - src/printError.cpp | 2 tests/testthat/test-ceemdan.R | 118 +++++++++++++++++++++--------------------- tests/testthat/test-eemd.R | 96 +++++++++++++++++----------------- 21 files changed, 267 insertions(+), 257 deletions(-)
Title: Bespoke Images of 'OpenStreetMap' Data
Description: Bespoke images of 'OpenStreetMap' ('OSM') data and data
visualisation using 'OSM' objects.
Author: Mark Padgham [aut, cre],
Richard Beare [aut],
Finkelstein Noam [ctb, cph] (Author of included stub.R code),
Bartnik Lukasz [ctb, cph] (Author of included stub.R code)
Maintainer: Mark Padgham <mark.padgham@email.com>
Diff between osmplotr versions 0.3.0 dated 2017-06-30 and 0.3.2 dated 2018-12-19
DESCRIPTION | 17 MD5 | 85 - NAMESPACE | 22 NEWS | 28 R/add-axes.R | 1 R/add-colourbar.R | 1 R/add-osm-groups.R | 117 +- R/add-osm-objects.R | 51 R/add-osm-surface.R | 2 R/adjust-colours.R | 6 R/check-fns.R | 15 R/extract-highways.R | 4 R/extract-osm-objects.R | 12 R/line2poly.R |only R/osm-basemap.R | 12 R/osm-structures.R | 6 R/osmplotr.R | 2 R/print-osm-map.R | 2 build/vignette.rds |binary data/london.rda |binary inst/doc/basic-maps.R | 10 inst/doc/basic-maps.Rmd | 36 inst/doc/basic-maps.html | 1582 +++++++++++++++++++++++++--- inst/doc/data-maps.R | 874 ++++++++++----- inst/doc/data-maps.Rmd | 885 +++++++++++---- inst/doc/data-maps.html | 1911 +++++++++++++++++++++++++++++----- inst/doc/maps-with-ocean.R |only inst/doc/maps-with-ocean.Rmd |only inst/doc/maps-with-ocean.html |only man/add_osm_groups.Rd | 6 man/add_osm_objects.Rd | 7 man/adjust_colours.Rd | 6 man/extract_osm_objects.Rd | 6 man/osm_basemap.Rd | 4 man/osm_line2poly.Rd |only man/osm_structures.Rd | 4 tests/testthat/test-extract-objects.R | 4 vignettes/README.md |only vignettes/basic-maps.Rmd | 36 vignettes/data-maps.Rmd | 885 +++++++++++---- vignettes/maps-with-ocean.Rmd |only vignettes/melb_a1.png |only vignettes/testEE.png |only vignettes/testEN.png |only vignettes/testEW.png |only vignettes/testEWWS.png |only vignettes/testNN.png |only vignettes/testNS.png |only vignettes/testSN.png |only vignettes/testSS.png |only vignettes/testWE.png |only vignettes/testWS.png |only vignettes/testWW.png |only 53 files changed, 5339 insertions(+), 1300 deletions(-)
Title: Estimation of Extreme Conditional Quantiles and Probabilities
Description: Extreme value theory, nonparametric kernel estimation, tail
conditional probabilities, extreme conditional quantile, adaptive estimation,
quantile regression, survival probabilities.
Author: Gilles Durrieu, Ion Grama, Kevin Jaunatre, Quang-Khoai Pham, Jean-Marie
Tricot
Maintainer: Kevin Jaunatre <kevin.jaunatre@univ-ubs.fr>
Diff between extremefit versions 0.2.5 dated 2018-12-11 and 1.0.0 dated 2018-12-19
DESCRIPTION | 11 +++++----- MD5 | 49 ++++++++++++++++++++++++++++++++++++++++------ R/PackageOxygen.R | 20 ++++++++++++++++-- build |only inst |only man/hill.adapt.Rd | 4 ++- man/hill.ts.Rd | 2 + man/predict.hill.adapt.Rd | 3 ++ man/predict.hill.ts.Rd | 3 ++ vignettes |only 10 files changed, 78 insertions(+), 14 deletions(-)
Title: Age-Depth Modelling using Bayesian Statistics
Description: Bacon is an approach to age-depth modelling that uses Bayesian statistics to reconstruct accumulation histories for deposits, through combining radiocarbon and other dates with prior information. See Blaauw & Christen (2011) <doi:10.1214/11-BA618>.
Author: Maarten Blaauw [aut, cre],
J. Andres Christen [aut],
Judith Esquivel Vazquez [ctb],
Ted Belding [cph],
James Theiler [cph],
Brian Gough [cph],
Charles Karney [cph]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Diff between rbacon versions 2.3.4 dated 2018-04-15 and 2.3.5 dated 2018-12-19
DESCRIPTION | 11 MD5 | 85 - NAMESPACE | 3 NEWS.md | 17 R/Bacon.R | 2348 --------------------------------- R/MCMC.R |only R/accrate.R |only R/agedepth.R |only R/calc.R |only R/calibrate.R |only R/internal_plots.R |only R/plots.R |only R/read_write.R |only inst/extdata/Curves/3Col_intcal13.14C | 1 inst/extdata/Curves/3Col_shcal13.14C | 1 inst/extdata/Curves/postbomb_NH1.14C | 1 inst/extdata/Curves/postbomb_NH2.14C | 1 inst/extdata/Curves/postbomb_NH3.14C | 1 inst/extdata/Curves/postbomb_SH1-2.14C | 1 inst/extdata/Curves/postbomb_SH3.14C | 2 man/AgesOfEvents.Rd | 2 man/Bacon.Age.d.Rd | 7 man/Bacon.Rd | 41 man/Bacon.cleanup.Rd | 2 man/Bacon.hist.Rd | 2 man/Bacon_runs.Rd | 2 man/Baconvergence.Rd | 2 man/accrate.age.Rd | 2 man/accrate.age.ghost.Rd | 2 man/accrate.depth.Rd | 2 man/accrate.depth.ghost.Rd | 2 man/add.dates.Rd | 2 man/age.pMC.Rd | 2 man/agedepth.Rd | 21 man/agemodel.it.Rd |only man/bacon2clam.Rd |only man/calib.plot.Rd | 8 man/clam2bacon.Rd |only man/copyCalibrationCurve.Rd | 2 man/flux.age.ghost.Rd | 2 man/mix.curves.Rd | 8 man/pMC.age.Rd | 2 man/proxy.ghost.Rd | 2 man/scissors.Rd | 11 man/thinner.Rd | 6 src/bacon.cpp | 2 src/bacon.h | 18 src/cal.h | 76 - src/twalk.h | 52 49 files changed, 250 insertions(+), 2502 deletions(-)
Title: Global Surface Summary of the Day ('GSOD') Weather Data Client
Description: Provides automated downloading, parsing, cleaning, unit conversion
and formatting of Global Surface Summary of the Day ('GSOD') weather data
from the from the USA National Centers for Environmental Information
('NCEI') for use in R. Units are converted from from United States
Customary System ('USCS') units to International System of Units ('SI').
Stations may be individually checked for number of missing days defined by
the user, where stations with too many missing observations are omitted.
Only stations with valid reported latitude and longitude values are
permitted in the final data. Additional useful elements, saturation vapour
pressure ('es'), actual vapour pressure ('ea') and relative humidity are
calculated from the original data and included in the final data set. The
resulting data include station identification information, state, country,
latitude, longitude, elevation, weather observations and associated flags.
Additional data are included with this R package: a list of elevation values
for stations between -60 and 60 degrees latitude derived from the Shuttle
Radar Topography Measuring Mission ('SRTM'). For information on the 'GSOD'
data from 'NCEI', please see the 'GSOD' 'readme.txt' file available from,
<http://www1.ncdc.noaa.gov/pub/data/gsod/readme.txt>.
Author: Adam Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>),
Tomislav Hengl [aut] (<https://orcid.org/0000-0002-9921-5129>),
Andrew Nelson [aut] (<https://orcid.org/0000-0002-7249-3778>),
Hugh Parsonage [cph, ctb] (<https://orcid.org/0000-0003-4055-0835>),
Bob Rudis [cph, ctb] (<https://orcid.org/0000-0001-5670-2640>),
Gwenael Giboire [ctb] (Several bug reports in early versions and
testing feedback),
Łukasz Pawlik [ctb] (Reported bug in windspeed conversion calculation),
Ross Darnell [ctb] (Reported bug in 'Windows OS' versions causing
'GSOD' data untarring to fail)
Maintainer: Adam Sparks <adamhsparks@gmail.com>
Diff between GSODR versions 1.3.0 dated 2018-11-19 and 1.3.1 dated 2018-12-19
DESCRIPTION | 6 MD5 | 30 NEWS.md | 10 R/get_GSOD.R | 19 R/internal_functions.R | 8 R/reformat_GSOD.R | 2 inst/doc/GSODR.R | 2 inst/doc/GSODR.Rmd | 2 inst/doc/GSODR.html | 1377 ++++++++++---------- inst/doc/Working_with_spatial_and_climate_data.html | 610 +++----- inst/doc/use_case_1.html | 633 +++------ inst/extdata/country_list.rda |binary inst/extdata/isd_history.rda |binary man/get_GSOD.Rd | 6 man/reformat_GSOD.Rd | 2 vignettes/GSODR.Rmd | 2 16 files changed, 1294 insertions(+), 1415 deletions(-)
Title: Implementation of Core Data Structures
Description: Implementation of advanced data structures such as hashmaps,
heaps, or queues. Advanced data structures are essential
in many computer science and statistics problems, for example graph
algorithms or string analysis. The package uses 'Boost' and 'STL' data
types and extends these to R with 'Rcpp' modules.
Author: Simon Dirmeier [aut, cre]
Maintainer: Simon Dirmeier <simon.dirmeier@web.de>
Diff between datastructures versions 0.2.7 dated 2018-08-16 and 0.2.8 dated 2018-12-19
datastructures-0.2.7/datastructures/R/methods_get.R |only datastructures-0.2.7/datastructures/R/methods_head.R |only datastructures-0.2.7/datastructures/R/methods_remove.R |only datastructures-0.2.7/datastructures/man/get-methods.Rd |only datastructures-0.2.7/datastructures/man/head-methods.Rd |only datastructures-0.2.7/datastructures/man/remove-methods.Rd |only datastructures-0.2.8/datastructures/DESCRIPTION | 10 datastructures-0.2.8/datastructures/MD5 | 114 +++--- datastructures-0.2.8/datastructures/NAMESPACE | 5 datastructures-0.2.8/datastructures/R/ds_deque_queue.R | 6 datastructures-0.2.8/datastructures/R/ds_deque_stack.R | 15 datastructures-0.2.8/datastructures/R/ds_heap.R | 4 datastructures-0.2.8/datastructures/R/ds_heap_binomial.R | 12 datastructures-0.2.8/datastructures/R/ds_heap_fibonacci.R | 12 datastructures-0.2.8/datastructures/R/ds_map.R | 22 - datastructures-0.2.8/datastructures/R/ds_map_bimap.R | 34 +- datastructures-0.2.8/datastructures/R/ds_map_hashmap.R | 12 datastructures-0.2.8/datastructures/R/ds_map_multimap.R | 35 +- datastructures-0.2.8/datastructures/R/ds_map_unordered.R | 10 datastructures-0.2.8/datastructures/R/methods_at.R |only datastructures-0.2.8/datastructures/R/methods_clear.R | 20 + datastructures-0.2.8/datastructures/R/methods_decrease.R | 16 datastructures-0.2.8/datastructures/R/methods_erase.R |only datastructures-0.2.8/datastructures/R/methods_handle.R | 9 datastructures-0.2.8/datastructures/R/methods_insert.R | 23 + datastructures-0.2.8/datastructures/R/methods_keys.R | 12 datastructures-0.2.8/datastructures/R/methods_peek.R | 25 + datastructures-0.2.8/datastructures/R/methods_pop.R | 20 + datastructures-0.2.8/datastructures/R/methods_size.R | 18 + datastructures-0.2.8/datastructures/R/methods_values.R | 24 + datastructures-0.2.8/datastructures/inst/doc/datastructures.R | 20 - datastructures-0.2.8/datastructures/inst/doc/datastructures.Rmd | 20 - datastructures-0.2.8/datastructures/inst/doc/datastructures.html | 163 +++++----- datastructures-0.2.8/datastructures/man/at-methods.Rd |only datastructures-0.2.8/datastructures/man/bimap-class.Rd | 3 datastructures-0.2.8/datastructures/man/bimap.Rd | 11 datastructures-0.2.8/datastructures/man/binomial_heap-class.Rd | 3 datastructures-0.2.8/datastructures/man/binomial_heap.Rd | 11 datastructures-0.2.8/datastructures/man/clear-methods.Rd | 21 + datastructures-0.2.8/datastructures/man/decrease_key-methods.Rd | 17 - datastructures-0.2.8/datastructures/man/erase-methods.Rd |only datastructures-0.2.8/datastructures/man/fibonacci_heap-class.Rd | 3 datastructures-0.2.8/datastructures/man/fibonacci_heap.Rd | 11 datastructures-0.2.8/datastructures/man/handle-methods.Rd | 10 datastructures-0.2.8/datastructures/man/hashmap-class.Rd | 3 datastructures-0.2.8/datastructures/man/hashmap.Rd | 11 datastructures-0.2.8/datastructures/man/insert-methods.Rd | 24 + datastructures-0.2.8/datastructures/man/keys-methods.Rd | 13 datastructures-0.2.8/datastructures/man/multimap-class.Rd | 3 datastructures-0.2.8/datastructures/man/multimap.Rd | 11 datastructures-0.2.8/datastructures/man/peek-methods.Rd | 32 + datastructures-0.2.8/datastructures/man/pop-methods.Rd | 21 + datastructures-0.2.8/datastructures/man/queue-class.Rd | 3 datastructures-0.2.8/datastructures/man/queue.Rd | 5 datastructures-0.2.8/datastructures/man/size-methods.Rd | 18 + datastructures-0.2.8/datastructures/man/stack-class.Rd | 3 datastructures-0.2.8/datastructures/man/stack.Rd | 11 datastructures-0.2.8/datastructures/man/values-methods.Rd | 25 + datastructures-0.2.8/datastructures/tests/testthat/tests_map.R | 2 datastructures-0.2.8/datastructures/tests/testthat/tests_map_bimap.R | 26 - datastructures-0.2.8/datastructures/tests/testthat/tests_map_multimap.R | 12 datastructures-0.2.8/datastructures/tests/testthat/tests_map_unordered_map.R | 24 - datastructures-0.2.8/datastructures/vignettes/datastructures.Rmd | 20 - 63 files changed, 766 insertions(+), 252 deletions(-)
More information about datastructures at CRAN
Permanent link
Title: Bayesian Group Sparse Multi-Task Regression
Description: Fits a Bayesian group-sparse multi-task regression model using Gibbs
sampling. The hierarchical prior encourages shrinkage of the estimated regression
coefficients at both the gene and SNP level. The model has been extended to a
spatial model that allows for two type correlation in neuroimaging genetics data and
been applied successfully to imaging phenotypes of dimension up to 100; it can be used
more generally for multivariate (non-imaging) phenotypes.
Author: Yin Song, Shufei Ge, Liangliang Wang, Farouk S. Nathoo, Keelin Greenlaw, Mary Lesperance
Maintainer: Yin Song <yinsong@uvic.ca>
Diff between bgsmtr versions 0.2 dated 2018-08-26 and 0.3 dated 2018-12-19
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 2 +- R/all_functions.R | 50 ++++++++++++++++++++++++++++++-------------------- man/sp_bgsmtr.Rd | 10 +++++----- 5 files changed, 44 insertions(+), 34 deletions(-)
Title: Statistical Methods for Visual Fields
Description: A collection of tools for analyzing the field of vision. It provides a framework for development and use of innovative methods for visualization, statistical analysis, and clinical interpretation of visual-field loss and its change over time. It is intended to be a tool for collaborative research.
Author: Ivan Marin-Franch <imarinfr@optocom.es>
Maintainer: Ivan Marin-Franch <imarinfr@optocom.es>
Diff between visualFields versions 0.5.5 dated 2018-11-12 and 0.6 dated 2018-12-19
visualFields-0.5.5/visualFields/R/vfplot_poplr.R |only visualFields-0.5.5/visualFields/man/vfplot_poplr.Rd |only visualFields-0.6/visualFields/DESCRIPTION | 10 visualFields-0.6/visualFields/MD5 | 70 +-- visualFields-0.6/visualFields/NAMESPACE | 8 visualFields-0.6/visualFields/R/colormapgraph.R | 33 - visualFields-0.6/visualFields/R/ghpostd.R | 34 - visualFields-0.6/visualFields/R/ghranktd.R | 3 visualFields-0.6/visualFields/R/hist_poplr.R | 62 +-- visualFields-0.6/visualFields/R/loadvfEyesuite.R | 8 visualFields-0.6/visualFields/R/pdvalghr.R | 2 visualFields-0.6/visualFields/R/poplr.R | 48 -- visualFields-0.6/visualFields/R/poplr_cstat.R | 94 +--- visualFields-0.6/visualFields/R/poplr_pstat.R | 101 +---- visualFields-0.6/visualFields/R/progols.R | 62 +-- visualFields-0.6/visualFields/R/vflayout.R | 13 visualFields-0.6/visualFields/R/vflayout_poplr.R | 343 +++++++++++------ visualFields-0.6/visualFields/R/vflayout_progress.R | 24 - visualFields-0.6/visualFields/R/vflayoutghr.R | 39 - visualFields-0.6/visualFields/R/vfplot.R | 102 +---- visualFields-0.6/visualFields/R/vfplot_legoplot.R |only visualFields-0.6/visualFields/R/vfplot_plr.R |only visualFields-0.6/visualFields/R/vfplot_sparklines.R |only visualFields-0.6/visualFields/R/vfplotloc.R | 19 visualFields-0.6/visualFields/man/colormapgraph.Rd | 8 visualFields-0.6/visualFields/man/ghpostd.Rd | 3 visualFields-0.6/visualFields/man/hist_poplr.Rd | 19 visualFields-0.6/visualFields/man/poplr.Rd | 14 visualFields-0.6/visualFields/man/poplr_cstat.Rd | 10 visualFields-0.6/visualFields/man/poplr_pstat.Rd | 8 visualFields-0.6/visualFields/man/progols.Rd | 9 visualFields-0.6/visualFields/man/vflayout.Rd | 5 visualFields-0.6/visualFields/man/vflayout_poplr.Rd | 22 - visualFields-0.6/visualFields/man/vflayout_progress.Rd | 5 visualFields-0.6/visualFields/man/vflayoutghr.Rd | 5 visualFields-0.6/visualFields/man/vfplot.Rd | 8 visualFields-0.6/visualFields/man/vfplot_legoplot.Rd |only visualFields-0.6/visualFields/man/vfplot_plr.Rd |only visualFields-0.6/visualFields/man/vfplot_sparklines.Rd |only visualFields-0.6/visualFields/man/vfplotloc.Rd | 8 40 files changed, 631 insertions(+), 568 deletions(-)
Title: Java Executable .jar Files for 'RKEEL'
Description: 'KEEL' is a popular Java software for a large number of different knowledge data discovery tasks. Furthermore, 'RKEEL' is a package with a R code layer between R and 'KEEL', for using 'KEEL' in R code. This package downloads and install the .jar files necessary for 'RKEEL' algorithms execution. For more information about 'KEEL', see <http://www.keel.es/>.
Author: Jose M. Moyano [aut, cre],
Luciano Sanchez Ramos [aut]
Maintainer: Jose M. Moyano <jmoyano@uco.es>
Diff between RKEELjars versions 1.0.18 dated 2018-06-27 and 1.0.19 dated 2018-12-19
DESCRIPTION | 8 - MD5 | 4 R/getJarList.R | 297 ++++++++++++++++++++++++++++----------------------------- 3 files changed, 156 insertions(+), 153 deletions(-)
Title: An Extension to 'ggplot2', for the Creation of Ternary Diagrams
Description: Extends the functionality of 'ggplot2', providing the capability
to plot ternary diagrams for (subset of) the 'ggplot2' geometries. Additionally,
'ggtern' has implemented several NEW geometries which are unavailable to the
standard 'ggplot2' release. For further examples and documentation, please
proceed to the 'ggtern' website.
Author: Nicholas Hamilton [aut, cre]
Maintainer: Nicholas Hamilton <nick@ggtern.com>
Diff between ggtern versions 3.0.0.1 dated 2018-11-06 and 3.1.0 dated 2018-12-19
DESCRIPTION | 13 - MD5 | 96 +++++----- R/geom-label-viewport.R | 6 R/ggtern-package.R | 11 + R/onLoad.R | 3 README.md | 14 + build/partial.rdb |binary inst/CITATION |only man/annotate.Rd | 9 man/annotation_raster_tern.Rd | 4 man/arrangeGrob.Rd | 5 man/breaks_tern.Rd | 1 man/coord_tern.Rd | 1 man/dot-getFunctions.Rd |only man/geom_Xisoprop.Rd | 4 man/geom_Xline.Rd | 25 -- man/geom_confidence_tern.Rd | 26 +- man/geom_crosshair_tern.Rd | 17 - man/geom_density_tern.Rd | 10 - man/geom_errorbarX.Rd | 12 - man/geom_hex_tern.Rd | 9 man/geom_interpolate_tern.Rd | 36 ++- man/geom_label_viewport.Rd | 12 - man/geom_mean_ellipse.Rd | 13 - man/geom_point_swap.Rd | 4 man/geom_polygon_closed.Rd | 4 man/geom_smooth_tern.Rd | 34 +-- man/geom_text_viewport.Rd | 10 - man/geom_tri_tern.Rd | 9 man/ggplot.Rd | 5 man/ggplot_gtable.Rd | 2 man/ggtern.Rd | 3 man/ggtern_labels.Rd | 8 man/ggtern_package.Rd | 10 + man/labels_tern.Rd | 1 man/overloaded.Rd | 14 - man/position_jitter_tern.Rd | 1 man/position_nudge_tern.Rd | 1 man/scale_X_continuous.Rd | 2 man/tern_limits.Rd | 1 man/theme.Rd | 394 +++++++++++++++++++++++++++--------------- man/theme_arrowlength.Rd | 1 man/theme_clockwise.Rd | 1 man/theme_showarrows.Rd | 4 man/theme_showgrid.Rd | 7 man/theme_showlabels.Rd | 1 man/theme_showprimary.Rd | 1 man/theme_showtitles.Rd | 6 man/undocumented.Rd | 30 --- man/zzz-depreciated.Rd | 7 50 files changed, 488 insertions(+), 400 deletions(-)
Title: Criterion-Referenced Test Analysis
Description: Contains methods for criterion-referenced test analyses as
described in Brown & Hudson (2002). This includes cut-score item discrimination
analyses and measures of dependability.
Author: Geoffrey T. LaFlair
Maintainer: Geoffrey T. LaFlair <gtlaflair@gmail.com>
Diff between rcrtan versions 0.1.0 dated 2018-08-17 and 0.1.1 dated 2018-12-19
DESCRIPTION | 12 ++-- MD5 | 14 ++--- NAMESPACE | 3 + NEWS.md | 20 ++------ R/dependability.R | 12 ++-- R/item_desc.R | 101 ++++++++++++++++++++++++------------------ build/vignette.rds |binary inst/doc/rcrtan-vignette.html | 4 - 8 files changed, 89 insertions(+), 77 deletions(-)
Title: Import 'OpenStreetMap' Data as Simple Features or Spatial
Objects
Description: Download and import of 'OpenStreetMap' ('OSM') data as 'sf' or 'sp'
objects. 'OSM' data are extracted from the 'Overpass' web server and
processed with very fast 'C++' routines for return to 'R'.
Author: Mark Padgham [aut, cre],
Bob Rudis [aut],
Robin Lovelace [aut],
Maëlle Salmon [aut],
Andrew Smith [ctb],
James Smith [ctb],
Marcin Kalicinski [ctb, cph] (Author of included RapidXML code),
Finkelstein Noam [ctb, cph] (Author of included stub.R code),
Bartnik Lukasz [ctb, cph] (Author of included stub.R code)
Maintainer: Mark Padgham <mark.padgham@email.com>
Diff between osmdata versions 0.0.8 dated 2018-10-22 and 0.0.9 dated 2018-12-19
osmdata-0.0.8/osmdata/tests/cfm_output_bb.rda |only osmdata-0.0.9/osmdata/DESCRIPTION | 12 osmdata-0.0.9/osmdata/MD5 | 127 ++-- osmdata-0.0.9/osmdata/NAMESPACE | 3 osmdata-0.0.9/osmdata/NEWS.md | 22 osmdata-0.0.9/osmdata/R/RcppExports.R | 12 osmdata-0.0.9/osmdata/R/features.R | 4 osmdata-0.0.9/osmdata/R/get-osmdata.R | 307 +++++++----- osmdata-0.0.9/osmdata/R/getbb.R | 59 +- osmdata-0.0.9/osmdata/R/opq.R | 63 +- osmdata-0.0.9/osmdata/R/osm-extract.R | 56 +- osmdata-0.0.9/osmdata/R/osmdata-class.R | 30 - osmdata-0.0.9/osmdata/R/osmdata-methods.R | 7 osmdata-0.0.9/osmdata/R/osmdata-package.R | 35 - osmdata-0.0.9/osmdata/R/overpass-query.R | 43 - osmdata-0.0.9/osmdata/R/poly2line.R | 16 osmdata-0.0.9/osmdata/R/trim-osmdata.R | 95 +++ osmdata-0.0.9/osmdata/R/unique-osmdata.R | 26 - osmdata-0.0.9/osmdata/R/zzz.R | 21 osmdata-0.0.9/osmdata/inst/doc/osm-sf-translation.Rmd | 4 osmdata-0.0.9/osmdata/inst/doc/osm-sf-translation.html | 73 ++ osmdata-0.0.9/osmdata/inst/doc/osmdata.R | 41 - osmdata-0.0.9/osmdata/inst/doc/osmdata.Rmd | 154 +++--- osmdata-0.0.9/osmdata/inst/doc/osmdata.html | 135 ++++- osmdata-0.0.9/osmdata/man/add_osm_feature.Rd | 9 osmdata-0.0.9/osmdata/man/bbox_to_string.Rd | 2 osmdata-0.0.9/osmdata/man/get_overpass_url.Rd | 2 osmdata-0.0.9/osmdata/man/getbb.Rd | 2 osmdata-0.0.9/osmdata/man/opq_osm_id.Rd | 11 osmdata-0.0.9/osmdata/man/osm_lines.Rd | 4 osmdata-0.0.9/osmdata/man/osm_multilines.Rd | 8 osmdata-0.0.9/osmdata/man/osm_multipolygons.Rd | 8 osmdata-0.0.9/osmdata/man/osm_points.Rd | 4 osmdata-0.0.9/osmdata/man/osm_polygons.Rd | 4 osmdata-0.0.9/osmdata/man/osmdata.Rd | 63 +- osmdata-0.0.9/osmdata/man/osmdata_pbf.Rd | 6 osmdata-0.0.9/osmdata/man/osmdata_sc.Rd |only osmdata-0.0.9/osmdata/man/osmdata_sf.Rd | 27 - osmdata-0.0.9/osmdata/man/osmdata_sp.Rd | 26 - osmdata-0.0.9/osmdata/man/osmdata_xml.Rd | 14 osmdata-0.0.9/osmdata/man/overpass_status.Rd | 8 osmdata-0.0.9/osmdata/man/set_overpass_url.Rd | 3 osmdata-0.0.9/osmdata/man/trim_osmdata.Rd | 22 osmdata-0.0.9/osmdata/man/unique_osmdata.Rd | 8 osmdata-0.0.9/osmdata/src/RcppExports.cpp | 11 osmdata-0.0.9/osmdata/src/common.h | 13 osmdata-0.0.9/osmdata/src/convert-osm-rcpp.cpp | 131 +++-- osmdata-0.0.9/osmdata/src/convert-osm-rcpp.h | 6 osmdata-0.0.9/osmdata/src/get-bbox.cpp | 4 osmdata-0.0.9/osmdata/src/get-bbox.h | 4 osmdata-0.0.9/osmdata/src/osmdata-sc.cpp |only osmdata-0.0.9/osmdata/src/osmdata-sc.h |only osmdata-0.0.9/osmdata/src/osmdata-sf.cpp | 34 - osmdata-0.0.9/osmdata/src/osmdata-sp.cpp | 82 +-- osmdata-0.0.9/osmdata/src/osmdata.h | 38 + osmdata-0.0.9/osmdata/src/osmdata_init.c | 6 osmdata-0.0.9/osmdata/src/trace-osm.cpp | 29 - osmdata-0.0.9/osmdata/src/trace-osm.h | 6 osmdata-0.0.9/osmdata/tests/cfm_output_bb1.rda |only osmdata-0.0.9/osmdata/tests/cfm_output_bb2.rda |only osmdata-0.0.9/osmdata/tests/testthat/test-c.R | 3 osmdata-0.0.9/osmdata/tests/testthat/test-getbb.R | 59 +- osmdata-0.0.9/osmdata/tests/testthat/test-osmdata.R | 34 + osmdata-0.0.9/osmdata/tests/testthat/test-sc-osm.R |only osmdata-0.0.9/osmdata/tests/testthat/test-sf-construction.R | 115 +++- osmdata-0.0.9/osmdata/tests/testthat/test-trim.R |only osmdata-0.0.9/osmdata/tests/testthat/test-unique.R |only osmdata-0.0.9/osmdata/vignettes/osm-sf-translation.Rmd | 4 osmdata-0.0.9/osmdata/vignettes/osmdata.Rmd | 154 +++--- 69 files changed, 1543 insertions(+), 766 deletions(-)
Title: Assigns Colours to Values
Description: Maps one of the viridis colour palettes, or a user-specified palette to values.
Viridis colour maps are created by Stéfan van der Walt and Nathaniel Smith.
They were set as the default palette for the 'Python' 'Matplotlib' library,
introduced at SciPy 2015 conference <http://scipy2015.scipy.org/ehome/index.php?eventid=115969&>.
Other palettes available in this library have been derived from
'RColorBrewer' <https://CRAN.R-project.org/package=RColorBrewer> and
'colorspace' <https://CRAN.R-project.org/package=colorspace> packages.
Author: David Cooley [aut, cre]
Maintainer: David Cooley <dcooley@symbolix.com.au>
Diff between colourvalues versions 0.2.0 dated 2018-11-07 and 0.2.1 dated 2018-12-19
colourvalues-0.2.0/colourvalues/inst/include/colourvalues/palettes/cvidis.hpp |only colourvalues-0.2.1/colourvalues/DESCRIPTION | 15 colourvalues-0.2.1/colourvalues/MD5 | 161 ++- colourvalues-0.2.1/colourvalues/NAMESPACE | 11 colourvalues-0.2.1/colourvalues/NEWS.md | 9 colourvalues-0.2.1/colourvalues/R/RcppExports.R | 188 +++ colourvalues-0.2.1/colourvalues/R/colour_values_hex.R | 11 colourvalues-0.2.1/colourvalues/R/colour_values_rgb.R | 6 colourvalues-0.2.1/colourvalues/R/colourvalues-package.R | 20 colourvalues-0.2.1/colourvalues/R/palettes.R | 429 ++++++++ colourvalues-0.2.1/colourvalues/README.md | 73 - colourvalues-0.2.1/colourvalues/inst/include/colourvalues/alpha/alpha.hpp | 18 colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palette_utils/palette_utils.hpp | 192 +++ colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes.hpp | 49 colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/blue2green.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/blue2red.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/blue2yellow.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/blues.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/brbg.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/bugn.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/bupu.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/cividis.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/cm.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/cyan2yellow.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/diverge_hcl.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/diverge_hsv.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/gnbu.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/green2red.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/greens.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/greys.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/heat.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/heat_hcl.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/inferno.hpp | 6 colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/magenta2green.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/magma.hpp | 6 colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/matlab_like.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/matlab_like2.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/oranges.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/orrd.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/piyg.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/plasma.hpp | 6 colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/prgn.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/pubu.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/pubugn.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/puor.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/purd.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/purples.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/rainbow.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/rainbow_hcl.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/rdbu.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/rdgy.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/rdpu.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/rdylbu.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/rdylgn.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/reds.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/sequential_hcl.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/spectral.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/terrain.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/terrain_hcl.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/topo.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/viridis.hpp | 6 colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/ygobb.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/ylgn.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/ylgnbu.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/ylorbr.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/palettes/ylorrd.hpp |only colourvalues-0.2.1/colourvalues/inst/include/colourvalues/summary/summary.hpp | 9 colourvalues-0.2.1/colourvalues/man/blue2green.Rd |only colourvalues-0.2.1/colourvalues/man/blue2red.Rd |only colourvalues-0.2.1/colourvalues/man/blue2yellow.Rd |only colourvalues-0.2.1/colourvalues/man/blues.Rd |only colourvalues-0.2.1/colourvalues/man/brbg.Rd |only colourvalues-0.2.1/colourvalues/man/bugn.Rd |only colourvalues-0.2.1/colourvalues/man/bupu.Rd |only colourvalues-0.2.1/colourvalues/man/cm.Rd |only colourvalues-0.2.1/colourvalues/man/colour_palettes.Rd |only colourvalues-0.2.1/colourvalues/man/colour_values.Rd | 5 colourvalues-0.2.1/colourvalues/man/cyan2yellow.Rd |only colourvalues-0.2.1/colourvalues/man/diverge_hcl.Rd |only colourvalues-0.2.1/colourvalues/man/diverge_hsv.Rd |only colourvalues-0.2.1/colourvalues/man/figures/README-unnamed-chunk-10-1.png |binary colourvalues-0.2.1/colourvalues/man/figures/README-unnamed-chunk-16-1.png |binary colourvalues-0.2.1/colourvalues/man/figures/README-unnamed-chunk-17-1.png |binary colourvalues-0.2.1/colourvalues/man/figures/README-unnamed-chunk-3-1.png |binary colourvalues-0.2.1/colourvalues/man/figures/README-unnamed-chunk-4-1.png |binary colourvalues-0.2.1/colourvalues/man/figures/README-unnamed-chunk-5-1.png |binary colourvalues-0.2.1/colourvalues/man/figures/README-unnamed-chunk-6-1.png |binary colourvalues-0.2.1/colourvalues/man/figures/README-unnamed-chunk-7-1.png |binary colourvalues-0.2.1/colourvalues/man/figures/README-unnamed-chunk-8-1.png |binary colourvalues-0.2.1/colourvalues/man/figures/README-unnamed-chunk-9-1.png |binary colourvalues-0.2.1/colourvalues/man/gnbu.Rd |only colourvalues-0.2.1/colourvalues/man/green2red.Rd |only colourvalues-0.2.1/colourvalues/man/greens.Rd |only colourvalues-0.2.1/colourvalues/man/greys.Rd |only colourvalues-0.2.1/colourvalues/man/heat.Rd |only colourvalues-0.2.1/colourvalues/man/heat_hcl.Rd |only colourvalues-0.2.1/colourvalues/man/magenta2green.Rd |only colourvalues-0.2.1/colourvalues/man/matlab_like.Rd |only colourvalues-0.2.1/colourvalues/man/matlab_like2.Rd |only colourvalues-0.2.1/colourvalues/man/oranges.Rd |only colourvalues-0.2.1/colourvalues/man/orrd.Rd |only colourvalues-0.2.1/colourvalues/man/piyg.Rd |only colourvalues-0.2.1/colourvalues/man/prgn.Rd |only colourvalues-0.2.1/colourvalues/man/pubu.Rd |only colourvalues-0.2.1/colourvalues/man/pubugn.Rd |only colourvalues-0.2.1/colourvalues/man/puor.Rd |only colourvalues-0.2.1/colourvalues/man/purd.Rd |only colourvalues-0.2.1/colourvalues/man/purples.Rd |only colourvalues-0.2.1/colourvalues/man/rainbow.Rd |only colourvalues-0.2.1/colourvalues/man/rainbow_hcl.Rd |only colourvalues-0.2.1/colourvalues/man/rdbu.Rd |only colourvalues-0.2.1/colourvalues/man/rdgy.Rd |only colourvalues-0.2.1/colourvalues/man/rdpu.Rd |only colourvalues-0.2.1/colourvalues/man/rdylbu.Rd |only colourvalues-0.2.1/colourvalues/man/rdylgn.Rd |only colourvalues-0.2.1/colourvalues/man/reds.Rd |only colourvalues-0.2.1/colourvalues/man/sequential_hcl.Rd |only colourvalues-0.2.1/colourvalues/man/show_colours.Rd |only colourvalues-0.2.1/colourvalues/man/spectral.Rd |only colourvalues-0.2.1/colourvalues/man/terrain.Rd |only colourvalues-0.2.1/colourvalues/man/terrain_hcl.Rd |only colourvalues-0.2.1/colourvalues/man/topo.Rd |only colourvalues-0.2.1/colourvalues/man/ygobb.Rd |only colourvalues-0.2.1/colourvalues/man/ylgn.Rd |only colourvalues-0.2.1/colourvalues/man/ylgnbu.Rd |only colourvalues-0.2.1/colourvalues/man/ylorbr.Rd |only colourvalues-0.2.1/colourvalues/man/ylorrd.Rd |only colourvalues-0.2.1/colourvalues/src/RcppExports.cpp | 517 ++++++++++ colourvalues-0.2.1/colourvalues/src/palettes.cpp | 401 +++++++ colourvalues-0.2.1/colourvalues/tests/testthat/test-colour_values_hex.R | 5 colourvalues-0.2.1/colourvalues/tests/testthat/test-summaries.R |only 131 files changed, 2019 insertions(+), 124 deletions(-)
Title: Generalized Mortality Estimator
Description: Command-line and 'shiny' GUI implementation of the GenEst models for estimating bird and bat mortality at wind and solar power facilities, following Dalthorp, et al. (2018) <doi:10.3133/tm7A2>.
Author: Daniel Dalthorp [aut, cre],
Juniper Simonis [aut],
Lisa Madsen [aut],
Manuela Huso [aut],
Paul Rabie [aut],
Jeffrey Mintz [aut],
Robert Wolpert [aut],
Jared Studyvin [aut],
Franzi Korner-Nievergelt [aut]
Maintainer: Daniel Dalthorp <ddalthorp@usgs.gov>
Diff between GenEst versions 1.2.0 dated 2018-12-06 and 1.2.1 dated 2018-12-19
DESCRIPTION | 10 MD5 | 88 ++-- R/GenEst.R | 3 R/app_download_functions.R | 38 -- R/app_functions.R | 4 R/app_msg_functions.R | 2 R/app_output_utilities.R | 5 R/app_panels.R | 24 - R/app_server.R | 16 R/app_ui.R | 4 R/app_ui_utilities.R | 2 R/app_update_input.R | 100 ++--- R/app_update_output.R | 26 - R/app_update_rv.R | 546 +++++++++++++---------------- R/app_utilities.R | 18 R/app_widgets.R | 35 - R/carcass_persistence_functions.R | 2 R/detection_probability_figure_functions.R | 1 R/detection_probability_functions.R | 19 - R/model_utility_functions.R | 6 R/mortality_functions.R | 6 R/searcher_efficiency_functions.R | 15 R/splits_functions.R | 17 R/utility_functions.R | 31 + inst/doc/GenEstGUI.Rmd | 2 inst/doc/GenEstGUI.html | 4 inst/doc/command-line-example.Rmd | 2 inst/doc/command-line-example.html | 116 +++--- inst/doc/solar-examples.Rmd | 2 inst/doc/solar-examples.html | 26 - inst/doc/wind-examples.Rmd | 2 inst/doc/wind-examples.html | 212 +++++------ man/GenEstServer.Rd | 2 man/downloadData.Rd | 2 man/downloadMFig.Rd | 4 man/modelInputWidget.Rd | 4 man/update_input.Rd | 2 man/update_output.Rd | 2 man/update_rv.Rd | 5 tests/testthat/test-01-data-load.R | 3 tests/testthat/test-02-GUI-UI.R | 2 vignettes/GenEstGUI.Rmd | 2 vignettes/command-line-example.Rmd | 2 vignettes/solar-examples.Rmd | 2 vignettes/wind-examples.Rmd | 2 45 files changed, 706 insertions(+), 712 deletions(-)