Title: Structured Products Valuation for
ExpressCertificates/Autocallables
Description: Provides pricing by duplication and Monte Carlo methods for Express Certificates products (also known as Autocallables).
Author: Stefan Wilhelm
Maintainer: Stefan Wilhelm <stefan.wilhelm@financial.com>
Diff between fExpressCertificates versions 1.2 dated 2013-08-30 and 1.3 dated 2019-01-09
.Rinstignore | 12 ++++++------ DESCRIPTION | 18 ++++++++++-------- MD5 | 8 ++++---- NAMESPACE | 8 ++++++-- NEWS | 4 ++++ R/BrownianBridge.R | 4 ++-- 6 files changed, 32 insertions(+), 22 deletions(-)
More information about fExpressCertificates at CRAN
Permanent link
Title: Joint Quantile and Expected Shortfall Regression
Description: Simultaneous modeling of the quantile and the expected shortfall of a response variable given
a set of covariates, see Dimitriadis and Bayer (2017) <arXiv:1704.02213>.
Author: Sebastian Bayer [aut, cre],
Timo Dimitriadis [aut]
Maintainer: Sebastian Bayer <sebastian.bayer@uni-konstanz.de>
Diff between esreg versions 0.3.1 dated 2017-08-22 and 0.4.0 dated 2019-01-09
esreg-0.3.1/esreg/R/esreg_twostep.R |only esreg-0.3.1/esreg/man/esr_psi_lp.Rd |only esreg-0.3.1/esreg/man/esreg_twostep.Rd |only esreg-0.3.1/esreg/man/gpl.Rd |only esreg-0.3.1/esreg/man/summary.esreg.Rd |only esreg-0.3.1/esreg/man/summary.esreg_twostep.Rd |only esreg-0.3.1/esreg/man/vcov.esreg_twostep.Rd |only esreg-0.3.1/esreg/src/helper_functions.cpp |only esreg-0.4.0/esreg/DESCRIPTION | 15 esreg-0.4.0/esreg/MD5 | 42 - esreg-0.4.0/esreg/NAMESPACE | 14 esreg-0.4.0/esreg/NEWS.md | 8 esreg-0.4.0/esreg/R/RcppExports.R | 41 - esreg-0.4.0/esreg/R/esreg.R | 671 +++++++++++++------------ esreg-0.4.0/esreg/R/helper_functions.R | 11 esreg-0.4.0/esreg/R/loss_functions.R | 21 esreg-0.4.0/esreg/R/nuisance_quantities.R | 31 - esreg-0.4.0/esreg/README.md | 21 esreg-0.4.0/esreg/man/esr_loss.Rd | 2 esreg-0.4.0/esreg/man/esr_rho_lp.Rd | 8 esreg-0.4.0/esreg/man/esreg.Rd | 73 +- esreg-0.4.0/esreg/man/vcov.esreg.Rd | 39 - esreg-0.4.0/esreg/man/vcovA.Rd |only esreg-0.4.0/esreg/man/vcovB.Rd |only esreg-0.4.0/esreg/src/RcppExports.cpp | 74 -- esreg-0.4.0/esreg/src/covariance_functions.cpp | 115 +--- esreg-0.4.0/esreg/src/target_functions.cpp | 101 --- 27 files changed, 555 insertions(+), 732 deletions(-)
Title: Summary Measures for Clinical Trials with Survival Outcomes
Description: Provides estimates of several summary measures for clinical trials including
the average hazard ratio, the weighted average hazard ratio, the restricted
superiority probability ratio, the restricted mean survival difference and
the ratio of restricted mean times lost, based on the short-term and
long-term hazard ratio model (Yang, 2005 <doi:10.1093/biomet/92.1.1>)
which accommodates various non-proportional hazards scenarios. The inference
procedures and the asymptotic results for the summary measures are discussed
in Yang (2018, <doi:10.1002/sim.7676>).
Author: Daewoo Pak and Song Yang
Maintainer: Daewoo Pak <heavyrain.pak@gmail.com>
Diff between ClinicalTrialSummary versions 1.0.0 dated 2019-01-02 and 1.0.1 dated 2019-01-09
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 3 ++- README.md | 2 +- man/ClinicalTrialSummary-package.Rd | 12 ++++++------ man/ypsummary.Rd | 12 ++++++------ 6 files changed, 24 insertions(+), 23 deletions(-)
More information about ClinicalTrialSummary at CRAN
Permanent link
Title: Nearest Neighbor Observation Imputation and Evaluation Tools
Description: Performs nearest neighbor-based imputation using one or more alternative
approaches to processing multivariate data. These include methods based on canonical
correlation analysis, canonical correspondence analysis, and a multivariate adaptation
of the random forest classification and regression techniques of Leo Breiman and Adele
Cutler. Additional methods are also offered. The package includes functions for
comparing the results from running alternative techniques, detecting imputation targets
that are notably distant from reference observations, detecting and correcting
for bias, bootstrapping and building ensemble imputations, and mapping results.
Author: Nicholas L. Crookston, Andrew O. Finley, John Coulston (Sunil Arya and David Mount for ANN)
Maintainer: Nicholas L. Crookston <ncrookston.fs@gmail.com>
Diff between yaImpute versions 1.0-30 dated 2018-07-24 and 1.0-31 dated 2019-01-09
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ NEWS | 5 +++++ data/MoscowMtStJoe.RData |binary data/TallyLake.RData |binary src/kd_dump.cpp | 2 +- src/kd_split.cpp | 6 +++--- 7 files changed, 21 insertions(+), 16 deletions(-)
Title: Phonetic Spelling Algorithms
Description: Provides a collection of phonetic algorithms including
Soundex, Metaphone, NYSIIS, Caverphone, and others.
Author: James P. Howard, II [aut, cre],
Oliver Keyes [ctb]
Maintainer: "James P. Howard, II" <jh@jameshoward.us>
Diff between phonics versions 1.1.0 dated 2018-08-16 and 1.2.3 dated 2019-01-09
DESCRIPTION | 12 - MD5 | 58 ++--- R/caverphone.R | 220 +++++++++++----------- R/cologne.R | 46 ++-- R/lein.R | 20 +- R/mra.R | 6 R/nysiis.R | 122 ++++++------ R/phonex.R | 56 ++--- R/rogerroot.R | 14 - R/statcan.R | 20 +- build/vignette.rds |binary inst/CITATION | 14 + inst/doc/phonics.html | 28 ++ src/RcppExports.cpp | 12 - src/metaphone.cpp | 388 +++++++++++++++++++-------------------- src/soundex.cpp | 187 +++++++++--------- tests/test-all.R | 1 tests/testthat/nysiis.csv | 35 ++- tests/testthat/soundex.csv | 4 tests/testthat/test-caverphone.R | 32 ++- tests/testthat/test-cologne.R | 14 - tests/testthat/test-lein.R | 16 + tests/testthat/test-metaphone.R | 16 + tests/testthat/test-mra.R | 32 ++- tests/testthat/test-nysiis.R | 32 ++- tests/testthat/test-onca.R | 16 + tests/testthat/test-phonex.R | 16 + tests/testthat/test-rogerroot.R | 16 + tests/testthat/test-soundex.R | 32 ++- tests/testthat/test-statcan.R | 16 + 30 files changed, 794 insertions(+), 687 deletions(-)
Title: Search Tools for PDF Files
Description: Includes functions for keyword search of pdf files. There is
also a wrapper that includes searching of all files within a single
directory.
Author: Brandon LeBeau [aut, cre]
Maintainer: Brandon LeBeau <lebebr01+pdfsearch@gmail.com>
Diff between pdfsearch versions 0.2.3 dated 2018-07-10 and 0.3.0 dated 2019-01-09
DESCRIPTION | 11 +- MD5 | 33 +++--- NAMESPACE | 4 NEWS.md | 10 + R/convert_tokens.r | 2 R/directory_search.r | 32 ++++- R/heading_search.r | 7 - R/keyword_search.r | 32 ++++- R/split_pdf.r | 72 +++++++++---- R/util.r | 5 build/vignette.rds |binary inst/CITATION |only inst/doc/intro_to_pdfsearch.html | 209 ++++++++++++++++++++------------------- man/convert_tokens.Rd | 4 man/heading_search.Rd | 7 + man/keyword_directory.Rd | 19 +++ man/keyword_search.Rd | 13 ++ tests/testthat/test_split.r | 2 18 files changed, 293 insertions(+), 169 deletions(-)
Title: Stubbing and Setting Expectations on 'HTTP' Requests
Description: Stubbing and setting expectations on 'HTTP' requests.
Includes tools for stubbing 'HTTP' requests, including expected
request conditions and response conditions. Match on
'HTTP' method, query parameters, request body, headers and
more. Can be used for unit tests or outside of a testing
context.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
rOpenSci [fnd] (https://ropensci.org)
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>
Diff between webmockr versions 0.2.9 dated 2018-11-05 and 0.3.0 dated 2019-01-09
DESCRIPTION | 12 +-- LICENSE | 2 MD5 | 43 +++++++------ NEWS.md | 11 +++ R/RequestPattern.R | 3 R/adapter-crul.R | 56 +++++++++-------- R/adapter-httr.R | 3 R/onload.R | 4 - R/stub_request.R | 4 - R/to_return.R | 5 + R/zzz.R | 29 +++++++- README.md | 15 ++-- man/stub_request.Rd | 4 - man/to_return.Rd | 5 + tests/testthat/test-CrulAdapter.R | 83 +++++++++++++++++++++++++ tests/testthat/test-RequestPattern.R | 97 +++++++++++++++++++++++++++++- tests/testthat/test-Response.R | 3 tests/testthat/test-flipswitch.R | 36 +++++++++++ tests/testthat/test-no-cassette-in-use.R | 24 +++---- tests/testthat/test-onload.R |only tests/testthat/test-remove_request_stub.R |only tests/testthat/test-request_registry.R |only tests/testthat/test-to_return.R | 95 ++++++++++++++++++++++++++++- tests/testthat/test-zutils.R | 9 ++ 24 files changed, 456 insertions(+), 87 deletions(-)
Title: Discrete-Event Simulation for R
Description: A process-oriented and trajectory-based Discrete-Event Simulation
(DES) package for R. It is designed as a generic yet powerful framework. The
architecture encloses a robust and fast simulation core written in 'C++' with
automatic monitoring capabilities. It provides a rich and flexible R API that
revolves around the concept of trajectory, a common path in the simulation
model for entities of the same type. Documentation about 'simmer' is provided
by several vignettes included in this package, via the paper by Ucar, Smeets
& Azcorra (2018, <arXiv:1705.09746>), and the paper by Ucar, Hernández,
Serrano & Azcorra (2018, <doi:10.1109/MCOM.2018.1700960>);
see 'citation("simmer")' for details.
Author: Iñaki Ucar [aut, cph, cre] (<https://orcid.org/0000-0001-6403-5550>),
Bart Smeets [aut, cph]
Maintainer: Iñaki Ucar <iucar@fedoraproject.org>
Diff between simmer versions 4.2.0 dated 2019-01-09 and 4.2.1 dated 2019-01-09
simmer-4.2.0/simmer/inst/doc/simmer-02-jss.html |only simmer-4.2.1/simmer/DESCRIPTION | 6 simmer-4.2.1/simmer/MD5 | 28 simmer-4.2.1/simmer/NEWS.md | 6 simmer-4.2.1/simmer/build/vignette.rds |binary simmer-4.2.1/simmer/inst/doc/simmer-01-introduction.html | 528 ++- simmer-4.2.1/simmer/inst/doc/simmer-02-jss.pdf |only simmer-4.2.1/simmer/inst/doc/simmer-03-trajectories.html | 2626 ++++++++------- simmer-4.2.1/simmer/inst/doc/simmer-04-bank-1.html | 1366 ++++--- simmer-4.2.1/simmer/inst/doc/simmer-04-bank-2.html | 1678 +++++---- simmer-4.2.1/simmer/inst/doc/simmer-05-simpy.html | 890 +++-- simmer-4.2.1/simmer/inst/doc/simmer-06-queueing.html | 558 ++- simmer-4.2.1/simmer/inst/doc/simmer-07-ctmc.html | 692 ++- simmer-4.2.1/simmer/inst/doc/simmer-08-philosophers.html | 432 +- simmer-4.2.1/simmer/inst/doc/simmer-aa-5G.html | 1087 +++--- simmer-4.2.1/simmer/inst/include/simmer/simulator_impl.h | 10 16 files changed, 5885 insertions(+), 4022 deletions(-)
Title: 'Rcpp' Bindings for the 'Corpus Workbench' ('CWB')
Description: 'Rcpp' Bindings for the C code of the 'Corpus Workbench' ('CWB'), an indexing and query
engine to efficiently analyze large corpora (<http://cwb.sourceforge.net>). 'RcppCWB' is licensed
under the GNU GPL-3, in line with the GPL-3 license of the 'CWB' (<https://www.r-project.org/
Licenses/GPL-3>). The 'CWB' relies on 'pcre' (BSD license, see <https://www.pcre.org/
licence.txt>) and 'GLib' (LGPL license, see <https://www.gnu.org/licenses/lgpl-3.0.en.
html>). See the file LICENSE.note for further information. The package includes modified code of the
'rcqp' package (GPL-2, see <https://cran.r-project.org/package=rcqp>). The original work of the authors
of the 'rcqp' package is acknowledged with great respect, and they are listed as authors of this
package. To achieve cross-platform portability (including Windows), using 'Rcpp' for wrapper code
is the approach used by 'RcppCWB'.
Author: Andreas Blaette [aut, cre],
Bernard Desgraupes [aut],
Sylvain Loiseau [aut],
Oliver Christ [ctb],
Bruno Maximilian Schulze [ctb],
Stefan Evert [ctb],
Arne Fitschen [ctb]
Maintainer: Andreas Blaette <andreas.blaette@uni-due.de>
Diff between RcppCWB versions 0.2.6 dated 2018-10-22 and 0.2.7 dated 2019-01-09
DESCRIPTION | 11 ++++--- MD5 | 43 +++++++++++++++-------------- NEWS.md | 55 +++++++++++++++++++++++++++++--------- R/RcppCWB_package.R | 7 +++- R/RcppExports.R | 4 ++ R/checks.R | 6 ++-- README.md | 7 ++-- configure | 31 +++++++++++++++++---- inst/extdata/cwb/registry/reuters | 4 +- inst/extdata/cwb/registry/unga | 4 +- man/RcppCWB-packge.Rd | 4 ++ man/checks.Rd | 3 +- man/cl_lexicon_size.Rd | 3 +- man/cwb_utils.Rd | 6 ++-- man/get_cbow_matrix.Rd | 4 +- man/p_attributes.Rd | 16 ++++++----- man/s_attributes.Rd | 4 +- src/RcppExports.cpp | 12 ++++++++ src/cqp.cpp | 46 +++++++++++++++++++++++++------ src/cwb/config/platform/darwin | 4 +- src/cwb/cqp/parser.tab.c | 4 ++ tests/testthat/test_cpos2id.R | 3 +- tools/maclibs.R |only 23 files changed, 196 insertions(+), 85 deletions(-)
Title: Visualization of Spatial and Spatio-Temporal Objects in Google
Earth
Description: Writes sp-class, spacetime-class, raster-class and similar spatial and spatio-temporal objects to KML following some basic cartographic rules.
Author: Tomislav Hengl [cre, aut],
Pierre Roudier [ctb],
Dylan Beaudette [ctb],
Edzer Pebesma [ctb],
Michael Blaschek [ctb]
Maintainer: Tomislav Hengl <tom.hengl@opengeohub.org>
Diff between plotKML versions 0.5-8 dated 2017-05-14 and 0.5-9 dated 2019-01-09
DESCRIPTION | 14 MD5 | 150 ++-- R/AAA-classes.R | 387 +++++------ R/AAA-md.R | 722 +++++++++++----------- R/AAAA.R | 68 -- R/ZZZ.R | 52 - R/aesthetics.R | 829 ++++++++++++------------- R/altitude.R | 6 R/attributes.R | 59 - R/check_projection.R | 6 R/col2kml.R | 111 +-- R/color_palettes.R | 75 +- R/count.R | 53 - R/export_metadata.R | 136 +--- R/geopath.R | 84 +- R/getWikiMedia.ImageInfo.R | 155 ++-- R/grid2poly.R | 128 +-- R/kml.R | 57 - R/kml.tiles.R | 213 +++--- R/kml_compress.R | 58 - R/kml_description.R | 81 +- R/kml_metadata.R | 128 +-- R/kml_open.R | 163 ++--- R/kml_screen.R | 95 +- R/layer.Raster.R | 463 +++++++------- R/layer.RasterBrick.R | 294 ++++----- R/layer.STIDF.R | 110 +-- R/layer.STTDF.R | 324 ++++----- R/layer.SoilProfileCollection.R | 590 ++++++++---------- R/layer.SpatialLines.R | 233 +++---- R/layer.SpatialPhotoOverlay.R | 357 +++++----- R/layer.SpatialPixels.R | 422 ++++++------ R/layer.SpatialPoints.R | 226 +++--- R/layer.SpatialPolygons.R | 381 +++++------ R/legend.bar.R | 144 ++-- R/legend.whitening.R | 93 +- R/normalizeFilename.R | 52 - R/plot.SpatialPredictions.R | 95 +- R/plotKML.GDALobj.R | 309 ++++----- R/plotKML.RasterBrickSimulations.R | 146 ++-- R/plotKML.RasterBrickTimeSeries.R | 141 ++-- R/plotKML.SpatialMaxEntOutput.R | 5 R/plotKML.SpatialPredictions.R | 200 ++---- R/plotKML.SpatialSamplingPattern.R | 104 +-- R/plotKML.SpatialVectorsSimulations.R | 174 ++--- R/plotKML.sp.R | 824 ++++++++++++------------- R/readGPX.R | 264 +++----- R/readKML.GBIFdensity.R | 191 ++--- R/reproject.R | 411 ++++++------ R/spMetadata.R | 1108 ++++++++++++++++------------------ R/spPhoto.R | 245 +++---- R/vect2rast.R | 539 ++++++++-------- R/whitening.R | 81 +- build/vignette.rds |binary demo/plotKML.R | 661 +++++++++----------- inst/doc/jss1079.R | 32 inst/doc/jss1079.Rnw | 13 man/HRprec08.Rd | 87 +- man/LST.Rd | 61 - man/SAGA_pal.Rd | 4 man/eberg.Rd | 18 man/getCRS.Rd | 2 man/gpxbtour.Rd | 4 man/layer.Raster.Rd | 2 man/layer.RasterBrick.Rd | 2 man/layer.STIDF.Rd | 4 man/layer.STTDF.Rd | 2 man/layer.SpatialPixels.Rd | 98 +-- man/plotKML-package.Rd | 4 man/plotKML.Rd | 4 man/plotKML.env.Rd | 2 man/readKML.GBIFdensity.Rd | 94 +- man/spMetadata.Rd | 2 man/worldgrids_pal.Rd | 4 vignettes/jss1079.Rnw | 13 vignettes/jss1079.bib | 860 +++++++++++++------------- 76 files changed, 7005 insertions(+), 7324 deletions(-)
More information about longitudinalcascade at CRAN
Permanent link
Title: Global and Individual Tests for Direct Effects
Description: Functions evaluate global and individual tests for direct effects in Mendelian randomization studies.
Author: James Dai [aut, cre],
Xiaoyu Wang [aut]
Maintainer: James Dai <jdai@fredhutch.org>
Diff between GLIDE versions 1.0.1 dated 2017-04-11 and 1.0.2 dated 2019-01-09
GLIDE-1.0.1/GLIDE/src/Makevars.in |only GLIDE-1.0.1/GLIDE/src/registerDynamicSymbol.c |only GLIDE-1.0.2/GLIDE/DESCRIPTION | 10 GLIDE-1.0.2/GLIDE/MD5 | 17 - GLIDE-1.0.2/GLIDE/R/glide.R | 4 GLIDE-1.0.2/GLIDE/build/vignette.rds |binary GLIDE-1.0.2/GLIDE/man/glide.Rd | 6 GLIDE-1.0.2/GLIDE/src/Makevars |only GLIDE-1.0.2/GLIDE/src/glide.c | 15 + GLIDE-1.0.2/GLIDE/vignettes/GLIDE.Rnw | 280 ++++++++++++-------------- GLIDE-1.0.2/GLIDE/vignettes/GLIDE.bib | 4 11 files changed, 171 insertions(+), 165 deletions(-)
Title: Compute Directly Standardized Rates, Ratios and Differences
Description: A set of functions to compute and compare directly standardized rates, rate differences and ratios. A variety of user defined options for analysis (e.g confidence intervals) and formatting are included.
Author: Matthew Kumar <mattkumar@gmail.com>
Maintainer: Matthew Kumar <mattkumar@gmail.com>
Diff between dsr versions 0.2.0 dated 2019-01-06 and 0.2.1 dated 2019-01-09
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- build/vignette.rds |binary inst/doc/dsr.Rmd | 17 +++++++++++++---- inst/doc/dsr.html | 29 ++++++++++++++++++++++++----- inst/doc/dsrre.R | 1 + inst/doc/dsrre.Rmd | 24 ++++++++++++++++++------ inst/doc/dsrre.html | 33 ++++++++++++++++++++++++++------- vignettes/dsr.Rmd | 17 +++++++++++++---- vignettes/dsrre.Rmd | 24 ++++++++++++++++++------ 10 files changed, 125 insertions(+), 44 deletions(-)
Title: A Collection of Statistical Tools for Biologists
Description: Contains functions from: Aho, K. (2014) Foundational and Applied Statistics for Biologists using R. CRC/Taylor and Francis, Boca Raton, FL, ISBN: 978-1-4398-7338-0.
Author: Ken Aho
Maintainer: Ken Aho <kenaho1@gmail.com>
Diff between asbio versions 1.5-3 dated 2018-09-18 and 1.5-4 dated 2019-01-09
DESCRIPTION | 8 MD5 | 82 +- R/anm.LV.r | 8 R/anm.ls.reg.r | 5 R/km.R | 16 R/samp.dist.snap.tck.r | 1552 ++++++++++++++++++++++++------------------------- R/see.Fcdf.r | 6 R/see.HW.r | 3 R/see.accPrec.tck.r | 6 R/see.adddel.r | 4 R/see.ancova.tck.r | 6 R/see.betacdf.r | 3 R/see.bincdf.r | 11 R/see.chicdf.r | 5 R/see.expcdf.r | 4 R/see.gamcdf.r | 3 R/see.geocdf.r | 3 R/see.hypercdf.r | 3 R/see.lmr.tck.r | 3 R/see.lmu.tck.r | 4 R/see.lnormcdf.r | 3 R/see.logiscdf.r | 3 R/see.mixedII.r | 3 R/see.mnom.tck.r | 3 R/see.nbincdf.r | 3 R/see.nlm.r | 3 R/see.normcdf.r | 8 R/see.poiscdf.r | 5 R/see.power.r | 4 R/see.rEffect.tck.r | 2 R/see.regression.tck.r | 4 R/see.roc.tck.r | 6 R/see.smooth.tck.r | 280 ++++---- R/see.tcdf.r | 5 R/see.ttest.tck.r | 5 R/see.unifcdf.r | 3 R/see.weibcdf.r | 3 build/vignette.rds |binary inst/doc/ranef.cov.pdf |binary inst/doc/simpson.pdf |binary man/km.Rd | 9 man/vs.rd | 4 42 files changed, 1087 insertions(+), 1004 deletions(-)
Title: R Markdown Templates to Preregister Scientific Studies
Description: Provides a collection of templates to author preregistration documents for scientific studies in PDF format.
Author: Frederik Aust [aut, cre] (<https://orcid.org/0000-0003-4900-788X>)
Maintainer: Frederik Aust <frederik.aust@uni-koeln.de>
Diff between prereg versions 0.3.0 dated 2017-07-08 and 0.4.0 dated 2019-01-09
DESCRIPTION | 12 MD5 | 16 - R/prereg.R | 2 R/vantveer_prereg.R | 2 README.md | 2 inst/NEWS.md | 6 inst/rmarkdown/templates/cos_prereg/skeleton/skeleton.Rmd | 192 ++++++++------ man/prereg.Rd | 2 man/vantveer_prereg.Rd | 2 9 files changed, 136 insertions(+), 100 deletions(-)
Title: Descriptive Statistics, Transition Plots, and More
Description: Tools for making the descriptive "Table 1" used in medical
articles, a transition plot for showing changes between categories
(also known as a Sankey diagram), flow charts by extending the grid package,
a method for variable selection based on the SVD, Bézier lines with arrows complementing the
ones in the 'grid' package, and more.
Author: Max Gordon <max@gforge.se>
Maintainer: Max Gordon <max@gforge.se>
Diff between Gmisc versions 1.7 dated 2018-11-09 and 1.8 dated 2019-01-09
DESCRIPTION | 16 +- MD5 | 61 ++++----- NAMESPACE | 1 NEWS | 7 + R/descGetMissing.R | 12 - R/descriptionStats.R | 187 +++++++++++++++--------------- R/getDescriptionStatsBy.R | 46 +++++-- R/mergeDesc.R | 4 R/private_functions.R | 2 R/retrieve_and_has.R | 8 - R/transitionPlot_helpers.R | 2 build/vignette.rds |binary inst/doc/Descriptives.html | 80 ++++++++---- inst/doc/Grid-based_flowcharts.html | 24 +++ inst/doc/Transition-class.Rmd | 2 inst/doc/Transition-class.html | 28 ++++ inst/doc/transitionPlot.Rmd | 6 inst/doc/transitionPlot.html | 34 ++++- man/describeFactors.Rd | 9 - man/describeMean.Rd | 9 - man/describeMedian.Rd | 8 - man/describeProp.Rd | 9 - man/getDescriptionStatsBy.Rd | 6 man/prGetStatistics.Rd | 6 man/retrieve.Rd | 3 src/Gmisc_lines.cpp | 18 +- src/gnrlBezier.cpp | 31 ++-- tests/testthat/Rplots.pdf |only tests/testthat/test-getDescriptionStats.R | 25 +++- tests/testthat/test-retrieve_and_has.R | 11 + vignettes/Transition-class.Rmd | 2 vignettes/transitionPlot.Rmd | 6 32 files changed, 421 insertions(+), 242 deletions(-)
Title: Create Tidy Data Frames of Marginal Effects for 'ggplot' from
Model Outputs
Description: Compute marginal effects from statistical models and returns the
result as tidy data frames. These data frames are ready to use with the
'ggplot2'-package. Marginal effects can be calculated for many different
models. Interaction terms, splines and polynomial terms are also supported.
The main functions are ggpredict(), ggemmeans() and ggeffect(). There is a
generic plot()-method to plot the results using 'ggplot2'.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between ggeffects versions 0.7.0 dated 2018-11-17 and 0.8.0 dated 2019-01-09
DESCRIPTION | 19 MD5 | 122 ++- NAMESPACE | 16 NEWS.md | 43 + R/emm.R | 21 R/getter.R | 16 R/ggeffect.R | 18 R/ggemmeans.R |only R/ggpredict.R | 254 ++++--- R/moderator_pattern.R | 17 R/plot.R | 109 +-- R/predictions.R | 856 ++++++++++++++++++-------- R/print.R | 42 + R/select_helpers.R | 24 R/themes.R |only R/utils.R | 96 +- R/utils_expand_data_to_grid.R | 149 ++++ R/utils_handle_labels.R | 10 R/utils_model_function.R | 9 R/utils_parse_vars_arguments.R | 16 R/utils_set_attr.R | 5 README.md | 8 build/partial.rdb |only build/vignette.rds |binary inst/doc/differencepredictemmeans.R |only inst/doc/differencepredictemmeans.Rmd |only inst/doc/differencepredictemmeans.html |only inst/doc/effectsatvalues.R | 4 inst/doc/effectsatvalues.Rmd | 6 inst/doc/effectsatvalues.html | 690 ++++++++++++++------- inst/doc/marginaleffects.R | 18 inst/doc/marginaleffects.Rmd | 55 + inst/doc/marginaleffects.html | 1062 +++++++++++++++++++++------------ inst/doc/plotmethod.R | 18 inst/doc/plotmethod.Rmd | 31 inst/doc/plotmethod.html | 471 +++++++++++--- inst/doc/randomeffects.R |only inst/doc/randomeffects.Rmd |only inst/doc/randomeffects.html |only inst/doc/stata.Rmd | 20 inst/doc/stata.html | 586 ++++++++++++------ man/emm.Rd | 97 +-- man/ggpredict.Rd | 217 ++++-- man/plot.Rd | 64 + tests/testthat/test-args.R | 52 + tests/testthat/test-brms-ppd.R |only tests/testthat/test-brms-trial.R |only tests/testthat/test-clean_vars.R | 16 tests/testthat/test-condition.R | 80 ++ tests/testthat/test-contrasts.R |only tests/testthat/test-contrasts2.R |only tests/testthat/test-contrasts3.R |only tests/testthat/test-decimals.R |only tests/testthat/test-glm.R | 35 + tests/testthat/test-glmer.R | 43 + tests/testthat/test-glmmTMB.R | 126 +++ tests/testthat/test-linear-models.R | 109 +++ tests/testthat/test-lmer.R | 26 tests/testthat/test-negbin.R | 4 tests/testthat/test-plot.R | 4 tests/testthat/test-polr.R | 17 tests/testthat/test-print.R | 10 tests/testthat/test-rstanarm-ppd.R |only tests/testthat/test-rstanarm.R | 16 tests/testthat/test-zeroinfl.R | 40 + vignettes/differencepredictemmeans.Rmd |only vignettes/effectsatvalues.Rmd | 6 vignettes/marginaleffects.Rmd | 55 + vignettes/plotmethod.Rmd | 31 vignettes/randomeffects.Rmd |only vignettes/stata.Rmd | 20 71 files changed, 4192 insertions(+), 1687 deletions(-)
Title: Extract Data Tables and Comments from 'Microsoft' 'Word'
Documents
Description: 'Microsoft Word' 'docx' files provide an 'XML' structure that is fairly
straightforward to navigate, especially when it applies to 'Word' tables and
comments. Tools are provided to determine table count/structure, comment count
and also to extract/clean tables and comments from 'Microsoft Word' 'docx' documents.
There is also nascent support for '.doc' files.
Author: Bob Rudis [aut, cre] (<https://orcid.org/0000-0001-5670-2640>),
Mark Dulhunty [ctb],
Karlo Guidoni-Martins [ctb],
Chris Muir [aut, ctb]
Maintainer: Bob Rudis <bob@rud.is>
Diff between docxtractr versions 0.5.0 dated 2018-09-18 and 0.6.1 dated 2019-01-09
DESCRIPTION | 14 +++++------ MD5 | 25 +++++++++++--------- NAMESPACE | 5 +--- NEWS.md | 9 +++++++ R/comments.R | 14 ++++++++--- R/describe.r | 5 +++- R/docx-extract-tbl.r | 6 +++- R/docxtractr-package.r | 3 -- R/read_docs.r | 50 ++++++++++++++++++++++++++++++++++++++-- R/utils-pipe.R |only inst/examples/trackchanges.docx |only man/docx_extract_all.Rd | 3 +- man/docx_extract_tbl.Rd | 4 +-- man/pipe.Rd |only man/read_docx.Rd | 19 ++++++++++++++- 15 files changed, 122 insertions(+), 35 deletions(-)
Title: Load US Census Boundary and Attribute Data as 'tidyverse' and
'sf'-Ready Data Frames
Description: An integrated R interface to the decennial US Census and American Community Survey APIs and
the US Census Bureau's geographic boundary files. Allows R users to return Census and ACS data as
tidyverse-ready data frames, and optionally returns a list-column with feature geometry for many
geographies.
Author: Kyle Walker [aut, cre],
Kris Eberwein [ctb],
Matt Herman [ctb]
Maintainer: Kyle Walker <kyle.walker@tcu.edu>
Diff between tidycensus versions 0.8.1 dated 2018-08-27 and 0.9 dated 2019-01-09
DESCRIPTION | 14 +++++----- MD5 | 14 +++++----- R/acs.R | 18 ++++++++++--- R/helpers.R | 24 ++++++----------- R/load_data.R | 49 ++++++++++++++++++++++++----------- R/search_variables.R | 6 ++-- README.md | 70 +++++++-------------------------------------------- man/get_acs.Rd | 4 +- 8 files changed, 88 insertions(+), 111 deletions(-)
Title: Access 'Nomis' UK Labour Market Data
Description: Access UK official statistics from the 'Nomis' database.
'Nomis' includes data from the Census, the Labour Force Survey, DWP benefit
statistics and other economic and demographic data from the Office for
National Statistics, based around statistical geographies. See
<https://www.nomisweb.co.uk/api/v01/help> for full API documentation.
Author: Evan Odell [aut, cre] (<https://orcid.org/0000-0003-1845-808X>),
Paul Egeler [rev, ctb],
Christophe Dervieux [rev] (<https://orcid.org/0000-0003-4474-2498>)
Maintainer: Evan Odell <evanodell91@gmail.com>
Diff between nomisr versions 0.4.0 dated 2018-08-03 and 0.4.1 dated 2019-01-09
DESCRIPTION | 8 - MD5 | 48 +++++----- NEWS.md | 10 ++ R/api-key.R | 98 ++++++++++----------- R/codelist.R | 17 +-- R/content_type.R | 100 ++++++++++----------- R/data_download.R | 187 +++++++++++++++++++++-------------------- R/dataset_info.R | 8 - R/metadata.R | 26 ++--- R/overview.R | 8 - R/search.R | 18 +-- R/utils-get-data.R | 9 + R/utils-tidy.R | 4 README.md | 4 build/vignette.rds |binary inst/doc/introduction.html | 127 ++++++++++++++++++++------- man/nomis_api_key.Rd | 14 +-- man/nomis_codelist.Rd | 6 - man/nomis_content_type.Rd | 6 - man/nomis_data_info.Rd | 8 - man/nomis_get_data.Rd | 111 ++++++++++++------------ man/nomis_get_metadata.Rd | 12 +- man/nomis_overview.Rd | 4 man/nomis_search.Rd | 2 tests/testthat/test_get_data.R | 22 +++- 25 files changed, 482 insertions(+), 375 deletions(-)
Title: Dynamic Stochastic Block Models
Description: Dynamic stochastic block model that combines a stochastic block model (SBM) for its static part with independent Markov chains for the evolution of the nodes groups through time, developed in Matias and Miele (2016) <doi:10.1111/rssb.12200>.
Author: Catherine Matias, Vincent Miele
Maintainer: Vincent Miele <vincent.miele@univ-lyon1.fr>
Diff between dynsbm versions 0.5 dated 2018-01-08 and 0.6 dated 2019-01-09
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/plot.R | 2 +- R/select.dynsbm.R | 2 +- man/select.dynsbm.Rd | 9 ++++++--- src/Makevars | 4 ++-- src/Makevars.win | 4 ++-- 7 files changed, 22 insertions(+), 19 deletions(-)
Title: Fast and Versatile Argument Checks
Description: Tests and assertions to perform frequent argument checks. A
substantial part of the package was written in C to minimize any worries
about execution time overhead.
Author: Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>),
Bernd Bischl [ctb]
Maintainer: Michel Lang <michellang@gmail.com>
Diff between checkmate versions 1.8.5 dated 2017-10-24 and 1.9.0 dated 2019-01-09
checkmate-1.8.5/checkmate/src/all_nchar.c |only checkmate-1.8.5/checkmate/src/all_nchar.h |only checkmate-1.8.5/checkmate/src/is_integerish.c |only checkmate-1.8.5/checkmate/src/is_integerish.h |only checkmate-1.8.5/checkmate/tests/testthat/test_checkNamed.R |only checkmate-1.9.0/checkmate/DESCRIPTION | 33 checkmate-1.9.0/checkmate/MD5 | 320 ++-- checkmate-1.9.0/checkmate/NAMESPACE | 37 checkmate-1.9.0/checkmate/NEWS.md | 33 checkmate-1.9.0/checkmate/R/asInteger.R | 5 checkmate-1.9.0/checkmate/R/assert.R | 4 checkmate-1.9.0/checkmate/R/checkAccess.R | 4 checkmate-1.9.0/checkmate/R/checkArray.R | 4 checkmate-1.9.0/checkmate/R/checkAtomic.R | 4 checkmate-1.9.0/checkmate/R/checkAtomicVector.R | 6 checkmate-1.9.0/checkmate/R/checkBit.R | 4 checkmate-1.9.0/checkmate/R/checkCharacter.R | 9 checkmate-1.9.0/checkmate/R/checkChoice.R | 12 checkmate-1.9.0/checkmate/R/checkClass.R | 9 checkmate-1.9.0/checkmate/R/checkComplex.R | 4 checkmate-1.9.0/checkmate/R/checkCount.R | 5 checkmate-1.9.0/checkmate/R/checkDataFrame.R | 8 checkmate-1.9.0/checkmate/R/checkDataTable.R | 8 checkmate-1.9.0/checkmate/R/checkDate.R | 4 checkmate-1.9.0/checkmate/R/checkDirectoryExists.R | 4 checkmate-1.9.0/checkmate/R/checkDisjunct.R |only checkmate-1.9.0/checkmate/R/checkDouble.R |only checkmate-1.9.0/checkmate/R/checkEnvironment.R | 4 checkmate-1.9.0/checkmate/R/checkFALSE.R | 4 checkmate-1.9.0/checkmate/R/checkFactor.R | 4 checkmate-1.9.0/checkmate/R/checkFileExists.R | 4 checkmate-1.9.0/checkmate/R/checkFlag.R | 4 checkmate-1.9.0/checkmate/R/checkFormula.R |only checkmate-1.9.0/checkmate/R/checkFunction.R | 8 checkmate-1.9.0/checkmate/R/checkInt.R | 5 checkmate-1.9.0/checkmate/R/checkInteger.R | 4 checkmate-1.9.0/checkmate/R/checkIntegerish.R | 5 checkmate-1.9.0/checkmate/R/checkList.R | 17 checkmate-1.9.0/checkmate/R/checkLogical.R | 4 checkmate-1.9.0/checkmate/R/checkMatrix.R | 12 checkmate-1.9.0/checkmate/R/checkMultiClass.R |only checkmate-1.9.0/checkmate/R/checkNamed.R | 6 checkmate-1.9.0/checkmate/R/checkNames.R | 16 checkmate-1.9.0/checkmate/R/checkNull.R | 4 checkmate-1.9.0/checkmate/R/checkNumber.R | 4 checkmate-1.9.0/checkmate/R/checkNumeric.R | 9 checkmate-1.9.0/checkmate/R/checkPOSIXct.R | 4 checkmate-1.9.0/checkmate/R/checkPathForOutput.R | 6 checkmate-1.9.0/checkmate/R/checkR6.R | 5 checkmate-1.9.0/checkmate/R/checkRaw.R |only checkmate-1.9.0/checkmate/R/checkScalar.R | 4 checkmate-1.9.0/checkmate/R/checkScalarNA.R | 4 checkmate-1.9.0/checkmate/R/checkSetEqual.R | 10 checkmate-1.9.0/checkmate/R/checkString.R | 4 checkmate-1.9.0/checkmate/R/checkSubset.R | 10 checkmate-1.9.0/checkmate/R/checkTRUE.R | 4 checkmate-1.9.0/checkmate/R/checkTibble.R | 8 checkmate-1.9.0/checkmate/R/checkVector.R | 8 checkmate-1.9.0/checkmate/R/helper.R | 18 checkmate-1.9.0/checkmate/R/makeAssertion.R | 45 checkmate-1.9.0/checkmate/R/makeExpectation.R | 26 checkmate-1.9.0/checkmate/R/makeTest.R | 14 checkmate-1.9.0/checkmate/R/qassert.R | 7 checkmate-1.9.0/checkmate/R/qassertr.R | 6 checkmate-1.9.0/checkmate/R/zzz.R | 39 checkmate-1.9.0/checkmate/build/vignette.rds |binary checkmate-1.9.0/checkmate/inst/doc/checkmate.R | 22 checkmate-1.9.0/checkmate/inst/doc/checkmate.Rmd | 28 checkmate-1.9.0/checkmate/inst/doc/checkmate.html | 685 ++++++---- checkmate-1.9.0/checkmate/man/asInteger.Rd | 17 checkmate-1.9.0/checkmate/man/checkAccess.Rd | 1 checkmate-1.9.0/checkmate/man/checkArray.Rd | 42 checkmate-1.9.0/checkmate/man/checkAtomic.Rd | 9 checkmate-1.9.0/checkmate/man/checkAtomicVector.Rd | 39 checkmate-1.9.0/checkmate/man/checkBit.Rd | 31 checkmate-1.9.0/checkmate/man/checkCharacter.Rd | 28 checkmate-1.9.0/checkmate/man/checkChoice.Rd | 9 checkmate-1.9.0/checkmate/man/checkClass.Rd | 16 checkmate-1.9.0/checkmate/man/checkComplex.Rd | 8 checkmate-1.9.0/checkmate/man/checkCount.Rd | 12 checkmate-1.9.0/checkmate/man/checkDataFrame.Rd | 52 checkmate-1.9.0/checkmate/man/checkDataTable.Rd | 42 checkmate-1.9.0/checkmate/man/checkDate.Rd | 14 checkmate-1.9.0/checkmate/man/checkDirectoryExists.Rd | 10 checkmate-1.9.0/checkmate/man/checkDisjunct.Rd |only checkmate-1.9.0/checkmate/man/checkDouble.Rd |only checkmate-1.9.0/checkmate/man/checkEnvironment.Rd | 7 checkmate-1.9.0/checkmate/man/checkFactor.Rd | 61 checkmate-1.9.0/checkmate/man/checkFileExists.Rd | 9 checkmate-1.9.0/checkmate/man/checkFlag.Rd | 1 checkmate-1.9.0/checkmate/man/checkFormula.Rd |only checkmate-1.9.0/checkmate/man/checkFunction.Rd | 10 checkmate-1.9.0/checkmate/man/checkInt.Rd | 16 checkmate-1.9.0/checkmate/man/checkInteger.Rd | 14 checkmate-1.9.0/checkmate/man/checkIntegerish.Rd | 28 checkmate-1.9.0/checkmate/man/checkList.Rd | 36 checkmate-1.9.0/checkmate/man/checkLogical.Rd | 9 checkmate-1.9.0/checkmate/man/checkMatrix.Rd | 56 checkmate-1.9.0/checkmate/man/checkMultiClass.Rd |only checkmate-1.9.0/checkmate/man/checkNamed.Rd | 3 checkmate-1.9.0/checkmate/man/checkNames.Rd | 30 checkmate-1.9.0/checkmate/man/checkNull.Rd | 9 checkmate-1.9.0/checkmate/man/checkNumber.Rd | 23 checkmate-1.9.0/checkmate/man/checkNumeric.Rd | 59 checkmate-1.9.0/checkmate/man/checkPOSIXct.Rd | 17 checkmate-1.9.0/checkmate/man/checkPathForOutput.Rd | 3 checkmate-1.9.0/checkmate/man/checkR6.Rd | 16 checkmate-1.9.0/checkmate/man/checkRaw.Rd |only checkmate-1.9.0/checkmate/man/checkScalar.Rd | 5 checkmate-1.9.0/checkmate/man/checkScalarNA.Rd | 4 checkmate-1.9.0/checkmate/man/checkSetEqual.Rd | 3 checkmate-1.9.0/checkmate/man/checkString.Rd | 1 checkmate-1.9.0/checkmate/man/checkSubset.Rd | 7 checkmate-1.9.0/checkmate/man/checkTibble.Rd | 44 checkmate-1.9.0/checkmate/man/checkVector.Rd | 61 checkmate-1.9.0/checkmate/man/checkmate-package.Rd | 59 checkmate-1.9.0/checkmate/man/makeAssertion.Rd | 13 checkmate-1.9.0/checkmate/man/makeExpectation.Rd | 9 checkmate-1.9.0/checkmate/man/makeTest.Rd | 1 checkmate-1.9.0/checkmate/man/matchArg.Rd | 3 checkmate-1.9.0/checkmate/man/qassert.Rd | 1 checkmate-1.9.0/checkmate/src/all_missing.c | 25 checkmate-1.9.0/checkmate/src/all_missing.h | 2 checkmate-1.9.0/checkmate/src/any_infinite.c | 5 checkmate-1.9.0/checkmate/src/any_infinite.h | 1 checkmate-1.9.0/checkmate/src/any_missing.c | 170 +- checkmate-1.9.0/checkmate/src/any_missing.h | 25 checkmate-1.9.0/checkmate/src/any_nan.c | 5 checkmate-1.9.0/checkmate/src/any_nan.h | 1 checkmate-1.9.0/checkmate/src/backports.h |only checkmate-1.9.0/checkmate/src/checks.c | 329 ++-- checkmate-1.9.0/checkmate/src/checks.h | 7 checkmate-1.9.0/checkmate/src/find_min_nchar.c |only checkmate-1.9.0/checkmate/src/find_min_nchar.h |only checkmate-1.9.0/checkmate/src/guess_type.c | 3 checkmate-1.9.0/checkmate/src/guess_type.h | 1 checkmate-1.9.0/checkmate/src/helper.c | 93 - checkmate-1.9.0/checkmate/src/helper.h | 24 checkmate-1.9.0/checkmate/src/init.c | 14 checkmate-1.9.0/checkmate/src/integerish.c |only checkmate-1.9.0/checkmate/src/integerish.h |only checkmate-1.9.0/checkmate/src/is_sorted.c |only checkmate-1.9.0/checkmate/src/is_sorted.h |only checkmate-1.9.0/checkmate/src/qassert.c | 97 - checkmate-1.9.0/checkmate/src/qassert.h | 1 checkmate-1.9.0/checkmate/src/which_first.c | 9 checkmate-1.9.0/checkmate/src/which_first.h | 1 checkmate-1.9.0/checkmate/tests/testthat/helper.R | 6 checkmate-1.9.0/checkmate/tests/testthat/test_altreps.R |only checkmate-1.9.0/checkmate/tests/testthat/test_checkCharacter.R | 10 checkmate-1.9.0/checkmate/tests/testthat/test_checkChoice.R | 1 checkmate-1.9.0/checkmate/tests/testthat/test_checkClass.R | 4 checkmate-1.9.0/checkmate/tests/testthat/test_checkCount.R | 3 checkmate-1.9.0/checkmate/tests/testthat/test_checkDataFrame.R | 8 checkmate-1.9.0/checkmate/tests/testthat/test_checkDataTable.R | 31 checkmate-1.9.0/checkmate/tests/testthat/test_checkDisjunct.R |only checkmate-1.9.0/checkmate/tests/testthat/test_checkDouble.R |only checkmate-1.9.0/checkmate/tests/testthat/test_checkFormula.R |only checkmate-1.9.0/checkmate/tests/testthat/test_checkFunction.R | 6 checkmate-1.9.0/checkmate/tests/testthat/test_checkInt.R | 9 checkmate-1.9.0/checkmate/tests/testthat/test_checkIntegerish.R | 19 checkmate-1.9.0/checkmate/tests/testthat/test_checkList.R | 16 checkmate-1.9.0/checkmate/tests/testthat/test_checkMatrix.R | 3 checkmate-1.9.0/checkmate/tests/testthat/test_checkMultiClass.R |only checkmate-1.9.0/checkmate/tests/testthat/test_checkNames.R | 9 checkmate-1.9.0/checkmate/tests/testthat/test_checkOS.R | 24 checkmate-1.9.0/checkmate/tests/testthat/test_checkRaw.R |only checkmate-1.9.0/checkmate/tests/testthat/test_checkSetEqual.R | 1 checkmate-1.9.0/checkmate/tests/testthat/test_checkSubset.R | 1 checkmate-1.9.0/checkmate/tests/testthat/test_checkTibble.R | 4 checkmate-1.9.0/checkmate/tests/testthat/test_interoperability.R | 2 checkmate-1.9.0/checkmate/tests/testthat/test_makeFunction.R | 28 checkmate-1.9.0/checkmate/tests/testthat/test_messages.R | 12 checkmate-1.9.0/checkmate/tests/testthat/test_qassert.R | 4 checkmate-1.9.0/checkmate/vignettes/checkmate.Rmd | 28 175 files changed, 2288 insertions(+), 1290 deletions(-)
Title: Conditional Distance Correlation Based Feature Screening and
Conditional Independence Inference
Description: Conditional distance correlation <doi:10.1080/01621459.2014.993081> is a novel conditional dependence measurement of two multivariate random variables given a confounding variable. This package provides conditional distance correlation, performs the conditional distance correlation sure independence screening procedure for ultrahigh dimensional data <doi:10.5705/ss.202014.0117>, and conducts conditional distance covariance test for conditional independence assumption of two multivariate variable.
Author: Wenhao Hu, Mian Huang, Wenliang Pan, Xueqin Wang, Canhong Wen, Yuan Tian, Heping Zhang, Jin Zhu
Maintainer: Jin Zhu <zhuj37@mail2.sysu.edu.cn>
Diff between cdcsis versions 1.0 dated 2014-10-21 and 2.0.0 dated 2019-01-09
cdcsis-1.0/cdcsis/R/bw.R |only cdcsis-1.0/cdcsis/R/cdcor.R |only cdcsis-1.0/cdcsis/man/bw.Rd |only cdcsis-1.0/cdcsis/man/cdcor.Rd |only cdcsis-1.0/cdcsis/man/cdcor.ada.Rd |only cdcsis-1.0/cdcsis/src/IterationcdCov.cpp |only cdcsis-1.0/cdcsis/src/cdCOV.c |only cdcsis-2.0.0/cdcsis/DESCRIPTION | 32 +-- cdcsis-2.0.0/cdcsis/MD5 | 48 +++- cdcsis-2.0.0/cdcsis/NAMESPACE | 17 + cdcsis-2.0.0/cdcsis/NEWS.md |only cdcsis-2.0.0/cdcsis/R/RcppExports.R |only cdcsis-2.0.0/cdcsis/R/cdcor.ada.R | 155 ++++++++++++-- cdcsis-2.0.0/cdcsis/R/cdcov.R | 242 ++++++++++++++++++++--- cdcsis-2.0.0/cdcsis/R/cdcsis-package.R |only cdcsis-2.0.0/cdcsis/R/cdcsis.R | 86 +++++++- cdcsis-2.0.0/cdcsis/R/utility.R |only cdcsis-2.0.0/cdcsis/README.md |only cdcsis-2.0.0/cdcsis/man/cdcov.Rd | 139 ++++++------- cdcsis-2.0.0/cdcsis/man/cdcov.test.Rd |only cdcsis-2.0.0/cdcsis/man/cdcsis-package.Rd | 71 ++---- cdcsis-2.0.0/cdcsis/man/cdcsis.Rd | 148 +++++++------- cdcsis-2.0.0/cdcsis/src/Makevars |only cdcsis-2.0.0/cdcsis/src/Makevars.win |only cdcsis-2.0.0/cdcsis/src/RcppExports.cpp |only cdcsis-2.0.0/cdcsis/src/cdc_stats.cpp |only cdcsis-2.0.0/cdcsis/src/cdc_stats.h |only cdcsis-2.0.0/cdcsis/src/cdc_statstics_method.cpp |only cdcsis-2.0.0/cdcsis/src/cdc_statstics_method.h |only cdcsis-2.0.0/cdcsis/src/cdcsisCpp.cpp |only cdcsis-2.0.0/cdcsis/src/dataRcpp.cpp |only cdcsis-2.0.0/cdcsis/src/dataRcpp.h |only cdcsis-2.0.0/cdcsis/src/global.h |only cdcsis-2.0.0/cdcsis/src/kde.cpp |only cdcsis-2.0.0/cdcsis/src/kde.h |only cdcsis-2.0.0/cdcsis/src/utility.cpp |only cdcsis-2.0.0/cdcsis/src/utility.h |only cdcsis-2.0.0/cdcsis/tests |only 38 files changed, 662 insertions(+), 276 deletions(-)
Title: Spatially Discrete Approximation to Log-Gaussian Cox Processes
for Aggregated Disease Count Data
Description: Provides a computationally efficient discrete approximation to log-Gaussian Cox process model for spatially aggregated disease count data. It uses Monte Carlo Maximum Likelihood for model parameter estimation as proposed by Christensen (2004) <doi: 10.1198/106186004X2525> and delivers prediction of spatially discrete and continuous relative risk. It performs inference for static spatial and spatio-temporal dataset.
Author: Olatunji Johnson [aut, cre],
Emanuele Giorgi [aut],
Peter Diggle [aut]
Maintainer: Olatunji Johnson <olatunjijohnson21111@gmail.com>
Diff between SDALGCP versions 0.1.0 dated 2018-08-14 and 0.2.0 dated 2019-01-09
DESCRIPTION | 15 - MD5 | 57 +++-- NAMESPACE | 10 + NEWS.md |only R/SDALGCP.R | 30 +-- R/dm_functions.R | 398 +++++++++++++++++++++++----------------- R/st_functions.R |only README.md | 89 ++++++++ build/vignette.rds |binary inst/doc/SDALGCP-vignette.R | 54 +++++ inst/doc/SDALGCP-vignette.Rmd | 75 +++++++ inst/doc/SDALGCP-vignette.html | 67 +++++- man/SDAContinuousPred.Rd | 5 man/SDALGCP.Rd | 20 +- man/SDALGCPMCML.Rd | 20 +- man/SDALGCPMCML_ST.Rd |only man/SDALGCPParaEst.Rd | 4 man/SDALGCPPred.Rd | 18 - man/SDALGCPPred_ST.Rd |only man/SDALGCPRegularPoint.Rd | 4 man/SDALGCPSSIPoint.Rd | 3 man/SDALGCPUniformPoint.Rd | 4 man/SDALGCPexceedanceST.Rd |only man/SDAProfilePhi.Rd |only man/controlmcmcSDA.Rd | 4 man/plot.Pred.SDALGCP.Rd | 14 - man/plot.Pred.SDALGCPST.Rd |only man/plot_SDALGCPexceedance.Rd | 6 man/plot_SDALGCPexceedanceST.Rd |only man/plot_continuous.Rd | 5 man/plot_continuousST.Rd |only man/plot_discrete.Rd | 4 man/plot_discreteST.Rd |only man/summary.SDALGCPST.Rd |only vignettes/SDALGCP-vignette.Rmd | 75 +++++++ 35 files changed, 703 insertions(+), 278 deletions(-)
Title: Tools for Working with ...
Description: In S3 generics, it's useful to take ... so that methods can
have additional argument. But this flexibility comes at a cost: misspelled
arguments will be silently ignored. The ellipsis packages is an experiment
that allows a generic to warn if any arguments passed in ... are not
used.
Author: Hadley Wickham [aut, cre],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between ellipsis versions 0.0.1 dated 2018-08-31 and 0.0.2 dated 2019-01-09
DESCRIPTION | 8 ++++---- MD5 | 5 +++-- NEWS.md |only src/dots.c | 9 ++++++--- 4 files changed, 13 insertions(+), 9 deletions(-)
Title: Functions for Text Mining and Topic Modeling
Description: An aid for text mining in R, with a syntax that
should be familiar to experienced R users. Provides a wrapper for several
topic models that take similarly-formatted input and give similarly-formatted
output. Has additional functionality for analyzing and diagnostics for
topic models.
Author: Thomas Jones [aut, cre],
William Doane [ctb]
Maintainer: Thomas Jones <jones.thos.w@gmail.com>
Diff between textmineR versions 3.0.1 dated 2018-10-31 and 3.0.2 dated 2019-01-09
DESCRIPTION | 15 - LICENSE | 2 MD5 | 49 +++-- NAMESPACE | 1 R/RcppExports.R | 8 R/textmineR.R | 1 R/topic_modeling_core.R | 270 +++++++++++++++++++++++++++++- build/vignette.rds |binary inst/doc/a_start_here.html | 28 ++- inst/doc/b_document_clustering.html | 28 ++- inst/doc/c_topic_modeling.R | 2 inst/doc/c_topic_modeling.Rmd | 4 inst/doc/c_topic_modeling.html | 38 +++- inst/doc/d_text_embeddings.html | 28 ++- inst/doc/e_doc_summarization.R | 2 inst/doc/e_doc_summarization.Rmd | 2 inst/doc/e_doc_summarization.html | 30 ++- inst/doc/f_tidytext_example.R |only inst/doc/f_tidytext_example.Rmd |only inst/doc/f_tidytext_example.html |only man/predict.ctm_topic_model.Rd | 2 man/update.lda_topic_model.Rd |only src/RcppExports.cpp | 28 +-- src/lda_c_functions.cpp | 44 ---- tests/testthat/test-topic_modeling_core.R | 119 ++++++++++++- vignettes/c_topic_modeling.Rmd | 4 vignettes/e_doc_summarization.Rmd | 2 vignettes/f_tidytext_example.Rmd |only 28 files changed, 577 insertions(+), 130 deletions(-)
Title: Distances on Directed Graphs
Description: Distances on dual-weighted directed graphs using priority-queue
shortest paths. Weighted directed graphs have weights from A to B which may
differ from those from B to A. Dual-weighted directed graphs have two sets
of such weights. A canonical example is a street network to be used for
routing in which routes are calculated by weighting distances according to
the type of way and mode of transport, yet lengths of routes must be
calculated from direct distances.
Author: Mark Padgham [aut, cre],
Andreas Petutschnig [aut],
Robin Lovelace [ctb],
Andrew Smith [ctb],
Malcolm Morgan [ctb],
Shane Saunders [cph] (Original author of included code for priority
heaps)
Maintainer: Mark Padgham <mark.padgham@email.com>
Diff between dodgr versions 0.1.1 dated 2018-10-24 and 0.1.2 dated 2019-01-09
dodgr-0.1.1/dodgr/man/dodgr_to_sf.Rd |only dodgr-0.1.1/dodgr/tests/testthat/test-dodgr.R |only dodgr-0.1.2/dodgr/DESCRIPTION | 10 dodgr-0.1.2/dodgr/MD5 | 74 +- dodgr-0.1.2/dodgr/NAMESPACE | 10 dodgr-0.1.2/dodgr/NEWS.md | 19 dodgr-0.1.2/dodgr/R/compare-heaps.R | 20 dodgr-0.1.2/dodgr/R/dists.R | 166 +++-- dodgr-0.1.2/dodgr/R/dodgr-package.r | 33 - dodgr-0.1.2/dodgr/R/flowmap.R | 6 dodgr-0.1.2/dodgr/R/flows.R | 96 ++ dodgr-0.1.2/dodgr/R/graph-contraction.R | 12 dodgr-0.1.2/dodgr/R/graph-conversion.R |only dodgr-0.1.2/dodgr/R/graph-functions-misc.R | 56 + dodgr-0.1.2/dodgr/R/graph-functions.R | 38 - dodgr-0.1.2/dodgr/R/paths.R | 60 - dodgr-0.1.2/dodgr/R/streetnet-fns.R | 485 +++++++++++---- dodgr-0.1.2/dodgr/README.md | 3 dodgr-0.1.2/dodgr/build/vignette.rds |binary dodgr-0.1.2/dodgr/inst/doc/benchmark.html | 69 ++ dodgr-0.1.2/dodgr/inst/doc/dodgr.html | 172 ++++- dodgr-0.1.2/dodgr/man/dodgr.Rd | 16 dodgr-0.1.2/dodgr/man/dodgr_distances.Rd | 8 dodgr-0.1.2/dodgr/man/dodgr_dists.Rd | 8 dodgr-0.1.2/dodgr/man/dodgr_flows_aggregate.Rd | 56 + dodgr-0.1.2/dodgr/man/dodgr_flows_disperse.Rd | 2 dodgr-0.1.2/dodgr/man/dodgr_paths.Rd | 6 dodgr-0.1.2/dodgr/man/dodgr_streetnet.Rd | 9 dodgr-0.1.2/dodgr/man/dodgr_to_igraph.Rd |only dodgr-0.1.2/dodgr/man/dodgr_to_sfc.Rd | 14 dodgr-0.1.2/dodgr/man/dodgr_to_tidygraph.Rd |only dodgr-0.1.2/dodgr/man/hampi.Rd | 2 dodgr-0.1.2/dodgr/man/match_points_to_graph.Rd |only dodgr-0.1.2/dodgr/man/os_roads_bristol.Rd | 2 dodgr-0.1.2/dodgr/man/weight_railway.Rd |only dodgr-0.1.2/dodgr/man/weight_streetnet.Rd | 42 + dodgr-0.1.2/dodgr/src/dijkstra.cpp | 81 ++ dodgr-0.1.2/dodgr/src/dijkstra.h | 50 + dodgr-0.1.2/dodgr/src/run_sp.cpp | 15 dodgr-0.1.2/dodgr/tests/testthat/test-dists.R |only dodgr-0.1.2/dodgr/tests/testthat/test-flows.R |only dodgr-0.1.2/dodgr/tests/testthat/test-graph-conversion.R |only dodgr-0.1.2/dodgr/tests/testthat/test-graph-fns.R |only dodgr-0.1.2/dodgr/tests/testthat/test-paths.R |only 44 files changed, 1215 insertions(+), 425 deletions(-)
Title: A 'dplyr' Back End for Databases
Description: A 'dplyr' back end for databases that allows you to
work with remote database tables as if they are in-memory data frames.
Basic features works with any database that has a 'DBI' back end; more
advanced features require 'SQL' translation to be provided by the
package author.
Author: Hadley Wickham [aut, cre],
Edgar Ruiz [aut],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between dbplyr versions 1.2.2 dated 2018-07-25 and 1.3.0 dated 2019-01-09
dbplyr-1.2.2/dbplyr/NEWS.md |only dbplyr-1.3.0/dbplyr/DESCRIPTION | 50 +-- dbplyr-1.3.0/dbplyr/MD5 | 118 ++++--- dbplyr-1.3.0/dbplyr/NAMESPACE | 4 dbplyr-1.3.0/dbplyr/R/db-compute.R | 3 dbplyr-1.3.0/dbplyr/R/db-odbc-mssql.R | 43 -- dbplyr-1.3.0/dbplyr/R/db-odbc-oracle.R | 42 ++ dbplyr-1.3.0/dbplyr/R/db-postgres.r | 7 dbplyr-1.3.0/dbplyr/R/db-roracle.R | 7 dbplyr-1.3.0/dbplyr/R/db-sqlite.r | 4 dbplyr-1.3.0/dbplyr/R/dbplyr.R | 2 dbplyr-1.3.0/dbplyr/R/do.r | 14 dbplyr-1.3.0/dbplyr/R/memdb.R | 2 dbplyr-1.3.0/dbplyr/R/partial-eval.r | 58 ++- dbplyr-1.3.0/dbplyr/R/sql-query.R | 15 - dbplyr-1.3.0/dbplyr/R/sql-render.R | 2 dbplyr-1.3.0/dbplyr/R/src_dbi.R | 16 - dbplyr-1.3.0/dbplyr/R/tbl-lazy.R | 2 dbplyr-1.3.0/dbplyr/R/tbl-sql.r | 12 dbplyr-1.3.0/dbplyr/R/translate-sql-base.r | 14 dbplyr-1.3.0/dbplyr/R/translate-sql-odbc.R | 6 dbplyr-1.3.0/dbplyr/R/translate-sql-window.r | 4 dbplyr-1.3.0/dbplyr/R/zzz.R | 2 dbplyr-1.3.0/dbplyr/README.md | 93 ++++-- dbplyr-1.3.0/dbplyr/build/vignette.rds |binary dbplyr-1.3.0/dbplyr/inst/doc/dbplyr.R | 2 dbplyr-1.3.0/dbplyr/inst/doc/dbplyr.Rmd | 2 dbplyr-1.3.0/dbplyr/inst/doc/dbplyr.html | 58 ++- dbplyr-1.3.0/dbplyr/inst/doc/new-backend.Rmd | 2 dbplyr-1.3.0/dbplyr/inst/doc/new-backend.html | 38 +- dbplyr-1.3.0/dbplyr/inst/doc/sql-translation.R | 4 dbplyr-1.3.0/dbplyr/inst/doc/sql-translation.Rmd | 4 dbplyr-1.3.0/dbplyr/inst/doc/sql-translation.html | 149 +++++----- dbplyr-1.3.0/dbplyr/man/dbplyr-package.Rd | 11 dbplyr-1.3.0/dbplyr/man/figures/logo.png |binary dbplyr-1.3.0/dbplyr/man/memdb_frame.Rd | 6 dbplyr-1.3.0/dbplyr/man/sql_build.Rd | 7 dbplyr-1.3.0/dbplyr/man/sql_variant.Rd | 3 dbplyr-1.3.0/dbplyr/man/src_dbi.Rd | 4 dbplyr-1.3.0/dbplyr/man/tbl_sql.Rd | 5 dbplyr-1.3.0/dbplyr/man/translate_sql.Rd | 5 dbplyr-1.3.0/dbplyr/tests/testthat/test-compute.R | 11 dbplyr-1.3.0/dbplyr/tests/testthat/test-group-size.R | 23 - dbplyr-1.3.0/dbplyr/tests/testthat/test-partial_eval.R | 9 dbplyr-1.3.0/dbplyr/tests/testthat/test-pull.R | 11 dbplyr-1.3.0/dbplyr/tests/testthat/test-sql-query-select.txt |only dbplyr-1.3.0/dbplyr/tests/testthat/test-sql-query.R | 5 dbplyr-1.3.0/dbplyr/tests/testthat/test-sql-translator.txt |only dbplyr-1.3.0/dbplyr/tests/testthat/test-sql-variant.txt |only dbplyr-1.3.0/dbplyr/tests/testthat/test-src_dbi.R |only dbplyr-1.3.0/dbplyr/tests/testthat/test-translate-mssql.r | 34 +- dbplyr-1.3.0/dbplyr/tests/testthat/test-translate-odbc.R | 1 dbplyr-1.3.0/dbplyr/tests/testthat/test-translate-oracle.R | 14 dbplyr-1.3.0/dbplyr/tests/testthat/test-translate-postgresql.R | 1 dbplyr-1.3.0/dbplyr/tests/testthat/test-translate-sql-helpers.r | 30 ++ dbplyr-1.3.0/dbplyr/tests/testthat/test-translate-sqlite.R | 8 dbplyr-1.3.0/dbplyr/tests/testthat/test-translate-vectorised.R | 14 dbplyr-1.3.0/dbplyr/tests/testthat/test-translate-window.R | 13 dbplyr-1.3.0/dbplyr/tests/testthat/test-translate.r | 6 dbplyr-1.3.0/dbplyr/tests/testthat/test-utils.R |only dbplyr-1.3.0/dbplyr/vignettes/dbplyr.Rmd | 2 dbplyr-1.3.0/dbplyr/vignettes/new-backend.Rmd | 2 dbplyr-1.3.0/dbplyr/vignettes/sql-translation.Rmd | 4 63 files changed, 637 insertions(+), 371 deletions(-)
Title: Wrapper Functions for 'SPM' (Statistical Parametric Mapping)
Version 12 from the 'Wellcome' Trust Centre for 'Neuroimaging'
Description: Installs 'SPM12' to the R library directory and has
associated functions for 'fMRI' and general imaging utilities,
called through 'MATLAB'.
Author: John Muschelli [cre, aut]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between spm12r versions 2.8.0 dated 2018-09-03 and 2.8.1 dated 2019-01-09
DESCRIPTION | 10 MD5 | 32 - NEWS.md | 7 R/install_spm12.R | 5 R/spm12_smooth.R | 2 build/vignette.rds |binary inst/doc/fmri_processing_spm12r.Rmd | 6 inst/doc/fmri_processing_spm12r.html | 646 +++++++++++------------ inst/doc/fmri_task_processing.Rmd | 4 inst/doc/fmri_task_processing.html | 796 ++++++++++++++-------------- inst/doc/fmri_task_processing_acpc.Rmd | 10 inst/doc/fmri_task_processing_acpc.html | 892 ++++++++++++++++---------------- man/install_spm12.Rd | 5 man/spm12_smooth.Rd | 2 vignettes/fmri_processing_spm12r.Rmd | 6 vignettes/fmri_task_processing.Rmd | 4 vignettes/fmri_task_processing_acpc.Rmd | 10 17 files changed, 1257 insertions(+), 1180 deletions(-)
Title: Landscape Epidemiology and Evolution
Description: A spatio-temporal stochastic model to assess resistance deployment strategies
against plant pathogens. The model is based on stochastic geometry for describing the
landscape and the resistant hosts, a dispersal kernel for the dissemination of the
pathogen, and a SEIR (Susceptible-Exposed-Infectious-Removed) architecture to simulate
plant response to disease.
Loup Rimbaud, Julien Papaïx, Jean-François Rey, Luke G Barrett,
Peter H Thrall (2018) <doi:10.1371/journal.pcbi.1006067>.
Author: Loup Rimbaud [aut],
Julien Papaix [aut],
Jean-Francois Rey [cre]
Maintainer: Jean-Francois Rey <jean-francois.rey@inra.fr>
Diff between landsepi versions 0.0.5 dated 2018-11-27 and 0.0.6 dated 2019-01-09
landsepi-0.0.5/landsepi/man/modelLandsEPI.Rd |only landsepi-0.0.6/landsepi/DESCRIPTION | 12 landsepi-0.0.6/landsepi/MD5 | 78 - landsepi-0.0.6/landsepi/NAMESPACE | 2 landsepi-0.0.6/landsepi/R/AgriLand.R | 206 +-- landsepi-0.0.6/landsepi/R/HLIRdynamics.R | 389 ++++-- landsepi-0.0.6/landsepi/R/RcppExports.R | 25 landsepi-0.0.6/landsepi/R/demo_landsepi.R | 93 - landsepi-0.0.6/landsepi/R/graphLand.R | 6 landsepi-0.0.6/landsepi/R/invlogit.R | 4 landsepi-0.0.6/landsepi/R/landsepi.R | 23 landsepi-0.0.6/landsepi/R/logit.R | 4 landsepi-0.0.6/landsepi/R/multiN.R | 44 landsepi-0.0.6/landsepi/R/periodic_cov.R | 4 landsepi-0.0.6/landsepi/R/plotevolQR.R | 4 landsepi-0.0.6/landsepi/R/simul_landsepi.R | 148 +- landsepi-0.0.6/landsepi/configure | 18 landsepi-0.0.6/landsepi/configure.ac | 2 landsepi-0.0.6/landsepi/data/dispH.rda |binary landsepi-0.0.6/landsepi/data/dispP_a40_b7.rda |binary landsepi-0.0.6/landsepi/data/landscapesTEST.rda |binary landsepi-0.0.6/landsepi/inst/extdata/README.pdf |binary landsepi-0.0.6/landsepi/man/AgriLand.Rd | 14 landsepi-0.0.6/landsepi/man/HLIRdynamics.Rd | 29 landsepi-0.0.6/landsepi/man/demo_landsepi.Rd | 2 landsepi-0.0.6/landsepi/man/landsepi-package.Rd | 27 landsepi-0.0.6/landsepi/man/model_landsepi.Rd |only landsepi-0.0.6/landsepi/man/multiN.Rd | 20 landsepi-0.0.6/landsepi/man/plotland.Rd | 6 landsepi-0.0.6/landsepi/man/simul_landsepi.Rd | 63 - landsepi-0.0.6/landsepi/src/RcppExports.cpp | 14 landsepi-0.0.6/landsepi/src/functions.cpp | 59 landsepi-0.0.6/landsepi/src/functions.hpp | 18 landsepi-0.0.6/landsepi/src/initialisation.cpp | 76 - landsepi-0.0.6/landsepi/src/initialisation.hpp | 17 landsepi-0.0.6/landsepi/src/memory.cpp | 4 landsepi-0.0.6/landsepi/src/memory.hpp | 4 landsepi-0.0.6/landsepi/src/model_simul.cpp | 1447 ++++++++++++------------ landsepi-0.0.6/landsepi/src/model_simul.hpp | 94 - landsepi-0.0.6/landsepi/src/printReadWrite.cpp | 135 -- landsepi-0.0.6/landsepi/src/printReadWrite.hpp | 13 41 files changed, 1665 insertions(+), 1439 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-22 0.1.1
Title: Weighted Linear Fixed Effects Regression Models for Causal
Inference
Description: Provides a computationally efficient way of fitting
weighted linear fixed effects estimators for causal
inference with various weighting schemes. Weighted linear
fixed effects estimators can be used to estimate the
average treatment effects under different identification
strategies. This includes stratified randomized
experiments, matching and stratification for
observational studies, first differencing, and
difference-in-differences. The package implements methods
described in Imai and Kim (2017) "When should We Use
Linear Fixed Effects Regression Models for Causal
Inference with Longitudinal Data?", available at
<https://imai.fas.harvard.edu/research/FEmatch.html>.
Author: In Song Kim [aut, cre],
Kosuke Imai [aut]
Maintainer: In Song Kim <insong@mit.edu>
Diff between wfe versions 1.7 dated 2018-11-25 and 1.8 dated 2019-01-09
Changelog | 1 + DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/wfe.R | 12 ++++++------ 4 files changed, 15 insertions(+), 14 deletions(-)
Title: Helper Methods for 'simmer' Trajectories
Description: Provides wrappers for common activity patterns in 'simmer' trajectories.
Author: Iñaki Ucar [aut, cph, cre] (<https://orcid.org/0000-0001-6403-5550>)
Maintainer: Iñaki Ucar <iucar@fedoraproject.org>
Diff between simmer.bricks versions 0.2.0 dated 2018-08-05 and 0.2.1 dated 2019-01-09
DESCRIPTION | 12 +++++----- MD5 | 16 ++++++------- NEWS.md | 15 ++++++++---- build/vignette.rds |binary inst/doc/introduction.html | 52 ++++++++++++++++++++++++++++++-------------- man/delayed_release.Rd | 4 +-- man/interleave.Rd | 4 +-- man/visit.Rd | 4 +-- tests/testthat/test-visit.R | 6 ++--- 9 files changed, 69 insertions(+), 44 deletions(-)
Title: Discrete-Event Simulation for R
Description: A process-oriented and trajectory-based Discrete-Event Simulation
(DES) package for R. It is designed as a generic yet powerful framework. The
architecture encloses a robust and fast simulation core written in 'C++' with
automatic monitoring capabilities. It provides a rich and flexible R API that
revolves around the concept of trajectory, a common path in the simulation
model for entities of the same type. Documentation about 'simmer' is provided
by several vignettes included in this package, via the paper by Ucar, Smeets
& Azcorra (2018, <arXiv:1705.09746>), and the paper by Ucar, Hernández,
Serrano & Azcorra (2018, <doi:10.1109/MCOM.2018.1700960>);
see 'citation("simmer")' for details.
Author: Iñaki Ucar [aut, cph, cre] (<https://orcid.org/0000-0001-6403-5550>),
Bart Smeets [aut, cph]
Maintainer: Iñaki Ucar <iucar@fedoraproject.org>
Diff between simmer versions 4.1.0 dated 2018-11-09 and 4.2.0 dated 2019-01-09
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Title: Sensitivity Analysis of Ordinary Differential Equations
Description: Performs sensitivity analysis in ordinary differential equation (ode) models.
The package utilize the ode interface from 'deSolve' and connects it with the
sensitivity analysis from 'sensitivity'. Additionally we add a method to
run the sensitivity analysis on variables with class 'ODEnetwork'. A detailed
plotting function provides outputs on the calculations.
The method is described by Weber, Theers, Surmann, Ligges, and Weihs (2018) <doi:10.17877/DE290R-18874>.
Author: Frank Weber [aut],
Stefan Theers [aut],
Dirk Surmann [ctb, cre] (<https://orcid.org/0000-0003-0873-137X>)
Maintainer: Dirk Surmann <surmann@statistik.tu-dortmund.de>
Diff between ODEsensitivity versions 1.1.1 dated 2018-05-29 and 1.1.2 dated 2019-01-09
DESCRIPTION | 6 - MD5 | 18 ++--- NEWS.md | 3 build/vignette.rds |binary inst/doc/ODEsensitivity.html | 94 +++++++++++++++++------------ tests/testthat/Rplots.pdf |binary tests/testthat/test_ODEmorris.ODEnetwork.R | 3 tests/testthat/test_ODEmorris.default.R | 3 tests/testthat/test_ODEsobol.ODEnetwork.R | 3 tests/testthat/test_ODEsobol.default.R | 3 10 files changed, 76 insertions(+), 57 deletions(-)
More information about ODEsensitivity at CRAN
Permanent link
Title: Dataframe Difference Tool
Description: Functions for comparing two data.frames against
each other. The core functionality is to provide a detailed breakdown of any differences
between two data.frames as well as providing utility functions to help narrow down the
source of problems and differences.
Author: Craig Gower [cre, aut],
Kieran Martin [aut]
Maintainer: Craig Gower <craig.gower@roche.com>
Diff between diffdf versions 1.0.1 dated 2018-07-23 and 1.0.2 dated 2019-01-09
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 6 +++++- R/misc_functions.R | 10 ++++++---- build/vignette.rds |binary inst/doc/diffdf-basic.html | 28 +++++++++++++++++++++++++--- man/cast_variables.Rd | 4 ++-- 7 files changed, 48 insertions(+), 20 deletions(-)
Title: Safely Access the RStudio API
Description: Access the RStudio API (if available) and provide informative error
messages when it's not.
Author: Kevin Ushey [aut, cre],
JJ Allaire [aut],
Hadley Wickham [aut],
Gary Ritchie [aut],
RStudio [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between rstudioapi versions 0.8 dated 2018-10-02 and 0.9.0 dated 2019-01-09
DESCRIPTION | 19 +++++++------ MD5 | 26 ++++++++++++++----- NAMESPACE | 12 ++++++++ NEWS.md | 8 +++++ R/dictionaries.R |only R/jobs.R |only R/themes.R | 64 +++++++++++++++++++++++++++++++++++++++++------ R/urls.R |only man/addTheme.Rd | 3 +- man/dictionaries.Rd |only man/getThemeInfo.Rd | 18 ++++++++----- man/jobAdd.Rd |only man/jobAddOutput.Rd |only man/jobAddProgress.Rd |only man/jobRemove.Rd |only man/jobRunScript.Rd |only man/jobSetProgress.Rd |only man/jobSetState.Rd |only man/jobSetStatus.Rd |only man/removeTheme.Rd |only man/translateLocalUrl.Rd |only 21 files changed, 119 insertions(+), 31 deletions(-)
Title: Psychometric Meta-Analysis Toolkit
Description: Tools for computing bare-bones and psychometric meta-analyses and for generating psychometric data for use in meta-analysis simulations. Supports bare-bones, individual-correction, and artifact-distribution methods for meta-analyzing correlations and d values. Includes tools for converting effect sizes, computing sporadic artifact corrections, reshaping meta-analytic databases, computing multivariate corrections for range variation, and more. Bugs can be reported to <https://github.com/psychmeta/psychmeta/issues> or <issues@psychmeta.com>.
Author: Jeffrey A. Dahlke [aut, cre],
Brenton M. Wiernik [aut],
Michael T. Brannick [ctb] (Testing),
Jack Kostal [ctb] (Code for reshape_mat2dat function),
Sean Potter [ctb] (Testing; Code for cumulative and leave1out plots),
John Sakaluk [ctb] (Code for funnel and forest plots),
Yuejia (Mandy) Teng [ctb] (Testing)
Maintainer: Jeffrey A. Dahlke <dahlk068@umn.edu>
Diff between psychmeta versions 2.2.1 dated 2018-10-13 and 2.3.0 dated 2019-01-09
DESCRIPTION | 8 - MD5 | 80 ++++++------ NEWS | 19 ++ R/compute_dmod.R | 2 R/convert_ma.R | 4 R/correct_d.R | 8 - R/correct_r_internal.R | 4 R/create_ad.R | 5 R/create_ad_list.R | 6 R/filters.R | 2 R/get_stuff.R | 6 R/impute_artifacts.R | 6 R/impute_artifacts_wrapper.R | 4 R/itemize_scales.R | 6 R/lm_mat.R | 2 R/ma_d.R | 2 R/ma_d_bb.R | 6 R/ma_d_ic.R | 4 R/ma_d_order2.R | 4 R/ma_r.R | 142 +++++++++++++++------- R/ma_r_bb.R | 6 R/ma_r_ic.R | 264 +++++++++++++++-------------------------- R/ma_r_order2.R | 4 R/ma_wrappers.R | 213 ++++++++++++++++----------------- R/methods_dplyr_ma_psychmeta.R | 5 R/methods_dplyr_ma_table.R | 5 R/methods_reattribute.R | 3 R/output.R | 2 R/remove_dependency.R | 6 R/reshape.R | 2 R/sensitivity_bootstrap.R | 24 +-- R/sensitivity_cumulative.R | 86 ++++--------- R/sensitivity_leave1out.R | 74 +++-------- R/simulate_d.R | 18 +- R/simulate_d_legacy.R | 10 - R/simulate_psych.R | 6 R/simulate_r.R | 20 +-- R/simulate_r_legacy.R | 4 R/var_error.R | 8 + R/var_error_tsa.R | 55 ++++---- inst/doc/overview.html | 67 ++++++++++ 41 files changed, 615 insertions(+), 587 deletions(-)
Title: Augments 'ASReml-R' in Fitting Mixed Models and Packages
Generally in Exploring Prediction Differences
Description: Assists in automating the testing of terms in mixed models when 'asreml' is
used to fit the models. Also used to display, in tables and graphs, predictions obtained
using any model fitting function and to explore differences between predictions.
The content falls into the following natural groupings: (i) Data, (ii) Object
manipulation functions, (iii) Model modification functions, (iv) Model testing functions,
(v) Model diagnostics functions, (vi) Prediction production and presentation functions,
(vii) Response transformation functions, and (viii) Miscellaneous functions. A history of
the fitting of a sequence of models is kept in a data frame. Procedures are available for
choosing models that conform to the hierarchy or marginality principle and for displaying
predictions for significant terms in tables and graphs. The 'asreml' package provides a
computationally efficient algorithm for fitting mixed models using Residual Maximum
Likelihood. It is a commercial packages that can be purchased from
'VSNi' <http://www.vsni.co.uk/> as 'asreml-R', who will supply a zip file for local
installation/updating. It is not needed for functions that are methods for 'alldiffs'
and 'data.frame' objects. The package 'asremPlus' can also be installed from
<http://chris.brien.name/rpackages/>.
Author: Chris Brien <Chris.Brien@unisa.edu.au>.
Maintainer: Chris Brien <Chris.Brien@unisa.edu.au>
Diff between asremlPlus versions 2.0-12 dated 2016-09-16 and 4.1-10 dated 2019-01-09
asremlPlus-2.0-12/asremlPlus/R/needasreml.R |only asremlPlus-2.0-12/asremlPlus/R/reml.lrt.r |only asremlPlus-2.0-12/asremlPlus/R/reml.v20.r |only asremlPlus-2.0-12/asremlPlus/R/variogram.faces.v2.r |only asremlPlus-2.0-12/asremlPlus/man/addrm.terms.asrtests.Rd |only asremlPlus-2.0-12/asremlPlus/man/alldiffs.Rd |only asremlPlus-2.0-12/asremlPlus/man/asrtests.Rd |only asremlPlus-2.0-12/asremlPlus/man/choose.model.asrtests.Rd |only asremlPlus-2.0-12/asremlPlus/man/info.crit.asreml.Rd |only asremlPlus-2.0-12/asremlPlus/man/newrcov.asrtests.Rd |only asremlPlus-2.0-12/asremlPlus/man/plotvariofaces.asreml.Rd |only asremlPlus-2.0-12/asremlPlus/man/power.transform.Rd |only asremlPlus-2.0-12/asremlPlus/man/pred.present.asreml.Rd |only asremlPlus-2.0-12/asremlPlus/man/predictiondiffs.asreml.Rd |only asremlPlus-2.0-12/asremlPlus/man/predictionplot.asreml.Rd |only asremlPlus-2.0-12/asremlPlus/man/predictparallel.asreml.Rd |only asremlPlus-2.0-12/asremlPlus/man/recalc.wald.tab.asrtests.Rd |only asremlPlus-2.0-12/asremlPlus/man/reml.lrt.asreml.Rd |only asremlPlus-2.0-12/asremlPlus/man/setvarianceterms.asreml.Rd |only asremlPlus-2.0-12/asremlPlus/man/sig.devn.reparam.asrtests.Rd |only asremlPlus-2.0-12/asremlPlus/man/testrcov.asrtests.Rd |only asremlPlus-2.0-12/asremlPlus/man/variofaces.Rd |only asremlPlus-2.0-12/asremlPlus/tests/testthat/testPredictionsPresentation.r |only asremlPlus-2.0-12/asremlPlus/tests/testthat/testSelection.r |only asremlPlus-4.1-10/asremlPlus/DESCRIPTION | 45 - asremlPlus-4.1-10/asremlPlus/LICENSE |only asremlPlus-4.1-10/asremlPlus/MD5 | 164 +++-- asremlPlus-4.1-10/asremlPlus/NAMESPACE | 123 +++- asremlPlus-4.1-10/asremlPlus/R/REMLRT.v3.r |only asremlPlus-4.1-10/asremlPlus/R/S3methodsDeprecations.r |only asremlPlus-4.1-10/asremlPlus/R/alldiffs.r |only asremlPlus-4.1-10/asremlPlus/R/asremlPlusUtilities.r |only asremlPlus-4.1-10/asremlPlus/R/bootREMLRT.v3.r |only asremlPlus-4.1-10/asremlPlus/R/estimateV.v3.R |only asremlPlus-4.1-10/asremlPlus/R/needasreml4.R |only asremlPlus-4.1-10/asremlPlus/R/plotPvalues.r |only asremlPlus-4.1-10/asremlPlus/R/reml4.v8.r |only asremlPlus-4.1-10/asremlPlus/R/variogram.faces.v5.r |only asremlPlus-4.1-10/asremlPlus/build/partial.rdb |binary asremlPlus-4.1-10/asremlPlus/data/Ladybird.dat.rda |only asremlPlus-4.1-10/asremlPlus/data/Oats.dat.rda |only asremlPlus-4.1-10/asremlPlus/data/WaterRunoff.dat.rda |binary asremlPlus-4.1-10/asremlPlus/data/Wheat.dat.rda |binary asremlPlus-4.1-10/asremlPlus/inst/NEWS.Rd | 250 ++++++++ asremlPlus-4.1-10/asremlPlus/inst/doc/asremlPlus-manual.pdf |binary asremlPlus-4.1-10/asremlPlus/man/Ladybird.dat.Rd |only asremlPlus-4.1-10/asremlPlus/man/Oats.dat.Rd |only asremlPlus-4.1-10/asremlPlus/man/REMLRT.asreml.Rd |only asremlPlus-4.1-10/asremlPlus/man/WaterRunoff.dat.Rd | 9 asremlPlus-4.1-10/asremlPlus/man/Wheat.dat.Rd | 1 asremlPlus-4.1-10/asremlPlus/man/allDifferences.data.frame.Rd |only asremlPlus-4.1-10/asremlPlus/man/alldiffs.object.Rd |only asremlPlus-4.1-10/asremlPlus/man/angular.Rd | 3 asremlPlus-4.1-10/asremlPlus/man/angular.mod.Rd | 3 asremlPlus-4.1-10/asremlPlus/man/as.alldiffs.Rd |only asremlPlus-4.1-10/asremlPlus/man/as.asrtests.Rd |only asremlPlus-4.1-10/asremlPlus/man/as.predictions.frame.Rd |only asremlPlus-4.1-10/asremlPlus/man/asremlPlus-deprecated.Rd | 68 ++ asremlPlus-4.1-10/asremlPlus/man/asremlPlus-package.Rd | 296 ++++++---- asremlPlus-4.1-10/asremlPlus/man/asremlPlusTips.Rd |only asremlPlus-4.1-10/asremlPlus/man/asrtests.object.Rd |only asremlPlus-4.1-10/asremlPlus/man/bootREMLRT.asreml.Rd |only asremlPlus-4.1-10/asremlPlus/man/changeTerms.asrtests.Rd |only asremlPlus-4.1-10/asremlPlus/man/chooseModel.asrtests.Rd |only asremlPlus-4.1-10/asremlPlus/man/estimateV.asreml.Rd |only asremlPlus-4.1-10/asremlPlus/man/facCombine.alldiffs.Rd |only asremlPlus-4.1-10/asremlPlus/man/getASRemlVersionLoaded.Rd |only asremlPlus-4.1-10/asremlPlus/man/infoCriteria.asreml.Rd |only asremlPlus-4.1-10/asremlPlus/man/is.alldiffs.Rd |only asremlPlus-4.1-10/asremlPlus/man/is.asrtests.Rd |only asremlPlus-4.1-10/asremlPlus/man/is.predictions.frame.Rd |only asremlPlus-4.1-10/asremlPlus/man/linTransform.alldiffs.Rd |only asremlPlus-4.1-10/asremlPlus/man/loadASRemlVersion.Rd |only asremlPlus-4.1-10/asremlPlus/man/newfit.asreml.Rd | 72 +- asremlPlus-4.1-10/asremlPlus/man/permute.square.Rd | 1 asremlPlus-4.1-10/asremlPlus/man/permute.to.zero.lowertri.Rd | 1 asremlPlus-4.1-10/asremlPlus/man/plotPredictions.data.frame.Rd |only asremlPlus-4.1-10/asremlPlus/man/plotPvalues.alldiffs.Rd |only asremlPlus-4.1-10/asremlPlus/man/plotPvalues.data.frame.Rd |only asremlPlus-4.1-10/asremlPlus/man/plotVariofaces.data.frame.Rd |only asremlPlus-4.1-10/asremlPlus/man/powerTransform.Rd |only asremlPlus-4.1-10/asremlPlus/man/predictPlus.asreml.Rd |only asremlPlus-4.1-10/asremlPlus/man/predictPresent.asreml.Rd |only asremlPlus-4.1-10/asremlPlus/man/predictions.frame.Rd |only asremlPlus-4.1-10/asremlPlus/man/print.alldiffs.Rd | 31 - asremlPlus-4.1-10/asremlPlus/man/print.asrtests.Rd | 19 asremlPlus-4.1-10/asremlPlus/man/recalcLSD.alldiffs.Rd |only asremlPlus-4.1-10/asremlPlus/man/recalcWaldTab.asrtests.Rd |only asremlPlus-4.1-10/asremlPlus/man/redoErrorIntervals.alldiffs.Rd |only asremlPlus-4.1-10/asremlPlus/man/reorderClassify.alldiffs.Rd |only asremlPlus-4.1-10/asremlPlus/man/reparamSigDevn.asrtests.Rd |only asremlPlus-4.1-10/asremlPlus/man/rmboundary.asrtests.Rd | 84 +- asremlPlus-4.1-10/asremlPlus/man/setvarianceterms.call.Rd |only asremlPlus-4.1-10/asremlPlus/man/simulate.asreml.Rd | 38 - asremlPlus-4.1-10/asremlPlus/man/sort.alldiffs.Rd |only asremlPlus-4.1-10/asremlPlus/man/subset.alldiffs.Rd |only asremlPlus-4.1-10/asremlPlus/man/testranfix.asrtests.Rd | 154 ++--- asremlPlus-4.1-10/asremlPlus/man/testresidual.asrtests.Rd |only asremlPlus-4.1-10/asremlPlus/man/testswapran.asrtests.Rd | 143 ++-- asremlPlus-4.1-10/asremlPlus/man/validAlldiffs.Rd |only asremlPlus-4.1-10/asremlPlus/man/validAsrtests.Rd |only asremlPlus-4.1-10/asremlPlus/man/validPredictionsFrame.Rd |only asremlPlus-4.1-10/asremlPlus/man/variofaces.asreml.Rd |only asremlPlus-4.1-10/asremlPlus/tests/testthat.R | 9 asremlPlus-4.1-10/asremlPlus/tests/testthat/Rplots.pdf |binary asremlPlus-4.1-10/asremlPlus/tests/testthat/data |only asremlPlus-4.1-10/asremlPlus/tests/testthat/spline.est.pdf |only asremlPlus-4.1-10/asremlPlus/tests/testthat/test3ChangeTerms.r |only asremlPlus-4.1-10/asremlPlus/tests/testthat/test3EstimateV.r |only asremlPlus-4.1-10/asremlPlus/tests/testthat/test3PredictionsPresentation.r |only asremlPlus-4.1-10/asremlPlus/tests/testthat/test3Selection.r |only asremlPlus-4.1-10/asremlPlus/tests/testthat/test3Simulate.r |only asremlPlus-4.1-10/asremlPlus/tests/testthat/test3Sortalldiffs.r |only asremlPlus-4.1-10/asremlPlus/tests/testthat/test3Variofaces.r |only asremlPlus-4.1-10/asremlPlus/tests/testthat/test3Wheat.r |only asremlPlus-4.1-10/asremlPlus/tests/testthat/test3alldiffs.r |only asremlPlus-4.1-10/asremlPlus/tests/testthat/test3bootREMLRTWheat.r |only asremlPlus-4.1-10/asremlPlus/tests/testthat/test4ChangeTerms.r |only asremlPlus-4.1-10/asremlPlus/tests/testthat/test4EstimateV.r |only asremlPlus-4.1-10/asremlPlus/tests/testthat/test4GeneticCane.R |only asremlPlus-4.1-10/asremlPlus/tests/testthat/test4HEB25estimateV.r |only asremlPlus-4.1-10/asremlPlus/tests/testthat/test4MET.r |only asremlPlus-4.1-10/asremlPlus/tests/testthat/test4Orange.r |only asremlPlus-4.1-10/asremlPlus/tests/testthat/test4PredictionsFrame.r |only asremlPlus-4.1-10/asremlPlus/tests/testthat/test4PredictionsPresentation.r |only asremlPlus-4.1-10/asremlPlus/tests/testthat/test4Selection.r |only asremlPlus-4.1-10/asremlPlus/tests/testthat/test4Simulate.r |only asremlPlus-4.1-10/asremlPlus/tests/testthat/test4Sortalldiffs.r |only asremlPlus-4.1-10/asremlPlus/tests/testthat/test4Variofaces.r |only asremlPlus-4.1-10/asremlPlus/tests/testthat/test4Wheat.r |only asremlPlus-4.1-10/asremlPlus/tests/testthat/test4alldiffs.r |only asremlPlus-4.1-10/asremlPlus/tests/testthat/test4alldiffslme.r |only asremlPlus-4.1-10/asremlPlus/tests/testthat/test4bootREMLRTWheat.r |only 133 files changed, 1052 insertions(+), 462 deletions(-)
Title: Discrete Laplace Mixture Inference using the EM Algorithm
Description: Make inference in a mixture of discrete Laplace distributions using the EM algorithm. This can e.g. be used for modelling the distribution of Y chromosomal haplotypes as described in [1, 2] (refer to the URL section).
Author: Mikkel Meyer Andersen [aut, cre],
Poul Svante Eriksen [aut]
Maintainer: Mikkel Meyer Andersen <mikl@math.aau.dk>
Diff between disclapmix versions 1.7 dated 2018-04-22 and 1.7.2 dated 2019-01-09
disclapmix-1.7.2/disclapmix/DESCRIPTION | 14 +- disclapmix-1.7.2/disclapmix/MD5 | 67 +++---------- disclapmix-1.7.2/disclapmix/NEWS | 8 + disclapmix-1.7.2/disclapmix/R/helper.R | 12 +- disclapmix-1.7.2/disclapmix/R/mixture.R | 4 disclapmix-1.7.2/disclapmix/README.md | 36 ++++++- disclapmix-1.7.2/disclapmix/build/vignette.rds |binary disclapmix-1.7.2/disclapmix/inst/doc/introduction.R | 21 ++-- disclapmix-1.7.2/disclapmix/inst/doc/introduction.Rmd | 25 +++-- disclapmix-1.7.2/disclapmix/inst/doc/introduction.html | 84 ++++++++++++----- disclapmix-1.7.2/disclapmix/inst/doc/mixtures.R | 2 disclapmix-1.7.2/disclapmix/inst/doc/mixtures.Rmd | 6 - disclapmix-1.7.2/disclapmix/inst/doc/mixtures.html | 38 ++++++- disclapmix-1.7.2/disclapmix/man/disclapmix.Rd | 8 - disclapmix-1.7.2/disclapmix/man/plot.disclapmixfit.Rd | 3 disclapmix-1.7.2/disclapmix/vignettes/introduction.Rmd | 25 +++-- disclapmix-1.7.2/disclapmix/vignettes/mixtures.Rmd | 6 - disclapmix-1.7.2/disclapmix/vignettes/refs.bib | 20 ++-- disclapmix-1.7/disclapmix/src/Makevars |only disclapmix-1.7/disclapmix/src/Makevars.win |only disclapmix-1.7/disclapmix/vignettes/introduction_cache |only 21 files changed, 232 insertions(+), 147 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-09-17 1.0
Title: Create Interactive Trelliscope Displays
Description: Trelliscope is a scalable, flexible, interactive approach to visualizing data (Hafen, 2013 <doi:10.1109/LDAV.2013.6675164>). This package provides methods that make it easy to create a Trelliscope display specification for TrelliscopeJS. High-level functions are provided for creating displays from within 'dplyr' or 'ggplot2' workflows. Low-level functions are also provided for creating new interfaces.
Author: Ryan Hafen [aut, cre],
Barret Schloerke [aut]
Maintainer: Ryan Hafen <rhafen@gmail.com>
Diff between trelliscopejs versions 0.1.14 dated 2018-10-14 and 0.1.18 dated 2019-01-09
DESCRIPTION | 8 +++--- MD5 | 16 ++++++------ NAMESPACE | 3 ++ NEWS.md | 5 +++ R/cog.R | 50 +++++++++++++++++++++++++------------- R/facet_trelliscope.R | 7 ++++- R/tidy.R | 22 ++++++++++++++++ build/vignette.rds |binary tests/testthat/test-trelliscope.R | 16 +++++++++++- 9 files changed, 97 insertions(+), 30 deletions(-)
Title: R Interface to Apache Spark
Description: R interface to Apache Spark, a fast and general engine for big data
processing, see <http://spark.apache.org>. This package supports connecting to
local and remote Apache Spark clusters, provides a 'dplyr' compatible back-end,
and provides an interface to Spark's built-in machine learning algorithms.
Author: Javier Luraschi [aut, cre],
Kevin Kuo [aut] (<https://orcid.org/0000-0001-7803-7901>),
Kevin Ushey [aut],
JJ Allaire [aut],
Samuel Macedo [ctb],
RStudio [cph],
The Apache Software Foundation [aut, cph]
Maintainer: Javier Luraschi <javier@rstudio.com>
Diff between sparklyr versions 0.9.3 dated 2018-11-29 and 0.9.4 dated 2019-01-09
DESCRIPTION | 6 MD5 | 41 +++--- NAMESPACE | 2 NEWS.md | 12 + R/dplyr_spark_table.R | 8 - R/stream_data.R | 273 ++++++++++++++++++++++++++++++++++++++++---- R/stream_operations.R | 7 + man/stream_read_csv.Rd | 19 +++ man/stream_read_json.Rd | 19 +++ man/stream_read_kafka.Rd | 36 ++++- man/stream_read_orc.Rd | 16 ++ man/stream_read_parquet.Rd | 16 ++ man/stream_read_scoket.Rd |only man/stream_read_text.Rd | 19 +++ man/stream_write_console.Rd |only man/stream_write_csv.Rd | 19 +++ man/stream_write_json.Rd | 10 + man/stream_write_kafka.Rd | 22 ++- man/stream_write_memory.Rd | 12 + man/stream_write_orc.Rd | 6 man/stream_write_parquet.Rd | 2 man/stream_write_text.Rd | 10 + tests/testthat/test-print.R |only 23 files changed, 482 insertions(+), 73 deletions(-)
Title: Filtering of Flow Cytometry Samples
Description: Filtering, also known as gating, of flow cytometry samples using
the curvHDR method, which is described in Naumann, U., Luta, G. and
Wand, M.P. (2010) <DOI:10.1186/1471-2105-11-44>.
Author: Matt Wand [aut, cre],
George Luta [aut],
Ulrike Naumann [aut],
Mathew W. McLean [ctb],
Dai Feng [ctb],
Luke Tierney [ctb],
Florian Hahne [ctb]
Maintainer: Matt Wand <matt.wand@uts.edu.au>
Diff between curvHDR versions 1.2-0 dated 2017-04-16 and 1.2-1 dated 2019-01-09
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++++----- NAMESPACE | 2 ++ R/curvHDRvignette.r |only R/zzz.r |only build/vignette.rds |binary inst/doc/manual.pdf |binary man/curvHDRvignette.Rd |only vignettes/curvHDR.pdf |binary vignettes/glmmEP.pdf |only 10 files changed, 15 insertions(+), 9 deletions(-)
Title: Create Blogs and Websites with R Markdown
Description: Write blog posts and web pages in R Markdown. This package supports
the static site generator 'Hugo' (<https://gohugo.io>) best, and it also
supports 'Jekyll' (<http://jekyllrb.com>) and 'Hexo' (<https://hexo.io>).
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Beilei Bian [ctb],
Forest Fang [ctb],
Garrick Aden-Buie [ctb],
Hiroaki Yutani [ctb],
Ian Lyttle [ctb],
JJ Allaire [ctb],
Kevin Ushey [ctb],
Leonardo Collado-Torres [ctb],
Xianying Tan [ctb],
RStudio Inc [cph]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between blogdown versions 0.9 dated 2018-10-23 and 0.10 dated 2019-01-09
DESCRIPTION | 14 +++--- MD5 | 24 +++++------ NEWS.md | 18 ++++++++ R/hugo.R | 24 ++++++----- R/render.R | 6 ++ R/serve.R | 5 -- R/utils.R | 59 ++++++++++++++++++++++------ README.md | 2 inst/rstudio/templates/project/skeleton.dcf | 12 +++++ inst/scripts/new_post.R | 28 +++++++++---- inst/scripts/update_meta.R | 10 ++-- man/hugo_cmd.Rd | 24 ++++++----- tests/testit/test-utils.R | 24 +++++++---- 13 files changed, 171 insertions(+), 79 deletions(-)