Title: Import Multiple Files From a Single Directory at Once
Description: The goal of tor (to-R) is to help you to import
multiple files from a single directory at once, and to do so as
quickly, flexibly, and simply as possible.
Author: Mauro Lepore [aut, cre]
Maintainer: Mauro Lepore <maurolepore@gmail.com>
Diff between tor versions 1.0.1 dated 2019-01-11 and 1.1.1 dated 2019-01-21
tor-1.0.1/tor/R/rds_list.R |only tor-1.1.1/tor/DESCRIPTION | 9 - tor-1.1.1/tor/MD5 | 32 +++--- tor-1.1.1/tor/NAMESPACE | 1 tor-1.1.1/tor/NEWS.md | 25 ++++- tor-1.1.1/tor/R/list_any.R | 40 ++++---- tor-1.1.1/tor/R/list_csv.R | 21 ++-- tor-1.1.1/tor/R/load_any.R |only tor-1.1.1/tor/R/load_csv.R | 31 ++++-- tor-1.1.1/tor/R/tor_example.R | 7 - tor-1.1.1/tor/README.md | 128 ++++++++++++++++++--------- tor-1.1.1/tor/inst/WORDLIST | 6 - tor-1.1.1/tor/man/list_any.Rd | 27 +++-- tor-1.1.1/tor/man/list_csv.Rd | 15 +-- tor-1.1.1/tor/man/load_any.Rd |only tor-1.1.1/tor/man/load_csv.Rd | 27 +++-- tor-1.1.1/tor/man/tor-package.Rd | 3 tor-1.1.1/tor/man/tor_example.Rd | 3 tor-1.1.1/tor/tests/testthat/test-load_any.R |only 19 files changed, 234 insertions(+), 141 deletions(-)
Title: Unified Parallel and Distributed Processing in R for Everyone
Description: The purpose of this package is to provide a lightweight and
unified Future API for sequential and parallel processing of R
expression via futures. The simplest way to evaluate an expression
in parallel is to use `x %<-% { expression }` with `plan(multiprocess)`.
This package implements sequential, multicore, multisession, and
cluster futures. With these, R expressions can be evaluated on the
local machine, in parallel a set of local machines, or distributed
on a mix of local and remote machines.
Extensions to this package implement additional backends for
processing futures via compute cluster schedulers etc.
Because of its unified API, there is no need to modify any code in order
switch from sequential on the local machine to, say, distributed
processing on a remote compute cluster.
Another strength of this package is that global variables and functions
are automatically identified and exported as needed, making it
straightforward to tweak existing code to make use of futures.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future versions 1.10.0 dated 2018-10-17 and 1.11.0 dated 2019-01-21
future-1.10.0/future/R/future_lapply.R |only future-1.10.0/future/man/future_lapply.Rd |only future-1.11.0/future/DESCRIPTION | 10 future-1.11.0/future/MD5 | 156 +- future-1.11.0/future/NAMESPACE | 3 future-1.11.0/future/NEWS | 516 +++++---- future-1.11.0/future/R/ClusterFuture-class.R | 82 - future-1.11.0/future/R/ClusterRegistry.R | 8 future-1.11.0/future/R/Future-class.R | 359 +++--- future-1.11.0/future/R/FutureCondition-class.R | 5 future-1.11.0/future/R/FutureResult-class.R | 62 - future-1.11.0/future/R/MulticoreFuture-class.R | 39 future-1.11.0/future/R/UniprocessFuture-class.R | 4 future-1.11.0/future/R/availableCores.R | 4 future-1.11.0/future/R/availableWorkers.R | 2 future-1.11.0/future/R/backtrace.R | 54 future-1.11.0/future/R/conditions_OP.R |only future-1.11.0/future/R/connections.R |only future-1.11.0/future/R/future.R | 7 future-1.11.0/future/R/futureCall.R | 15 future-1.11.0/future/R/makeClusterMPI.R | 5 future-1.11.0/future/R/makeClusterPSOCK.R | 547 +++++++--- future-1.11.0/future/R/multicore.R | 4 future-1.11.0/future/R/multisession.R | 2 future-1.11.0/future/R/sessionDetails.R | 2 future-1.11.0/future/R/signalEarly.R | 73 - future-1.11.0/future/R/utils.R | 52 future-1.11.0/future/R/uuid.R | 1 future-1.11.0/future/R/zzz.plan.R | 99 + future-1.11.0/future/build/vignette.rds |binary future-1.11.0/future/demo/fibonacci.R | 9 future-1.11.0/future/demo/mandelbrot.R | 8 future-1.11.0/future/inst/WORDLIST | 18 future-1.11.0/future/inst/doc/future-1-overview.html | 116 +- future-1.11.0/future/inst/doc/future-1-overview.md.rsp | 117 +- future-1.11.0/future/inst/doc/future-2-output.html | 63 - future-1.11.0/future/inst/doc/future-2-output.md.rsp | 68 + future-1.11.0/future/inst/doc/future-3-topologies.html | 2 future-1.11.0/future/inst/doc/future-3-topologies.md.rsp | 2 future-1.11.0/future/inst/doc/future-4-issues.html | 16 future-1.11.0/future/inst/doc/future-4-issues.md.rsp | 17 future-1.11.0/future/inst/doc/future-5-startup.html | 2 future-1.11.0/future/inst/doc/future-5-startup.md.rsp | 2 future-1.11.0/future/inst/vignettes-static/future-1-overview.md.rsp.rsp | 95 + future-1.11.0/future/inst/vignettes-static/incl/future-1-overview-example2.R | 8 future-1.11.0/future/inst/vignettes-static/incl/future-1-overview-example3.R | 8 future-1.11.0/future/man/ClusterFuture-class.Rd | 5 future-1.11.0/future/man/Future-class.Rd | 16 future-1.11.0/future/man/FutureCondition.Rd | 4 future-1.11.0/future/man/FutureResult.Rd | 25 future-1.11.0/future/man/autoStopCluster.Rd | 2 future-1.11.0/future/man/availableCores.Rd | 2 future-1.11.0/future/man/backtrace.Rd | 34 future-1.11.0/future/man/cluster.Rd | 5 future-1.11.0/future/man/find_references.Rd | 7 future-1.11.0/future/man/find_rshcmd.Rd |only future-1.11.0/future/man/future.Rd | 31 future-1.11.0/future/man/grapes-conditions-grapes.Rd |only future-1.11.0/future/man/makeClusterPSOCK.Rd | 175 ++- future-1.11.0/future/man/multiprocess.Rd | 5 future-1.11.0/future/man/multisession.Rd | 5 future-1.11.0/future/man/plan.Rd | 7 future-1.11.0/future/man/remote.Rd | 5 future-1.11.0/future/man/sequential.Rd | 2 future-1.11.0/future/tests/cluster-missing-future-pkg.R | 2 future-1.11.0/future/tests/cluster.R | 38 future-1.11.0/future/tests/demo.R | 41 future-1.11.0/future/tests/futureCall.R | 15 future-1.11.0/future/tests/incl/start,load-only.R | 3 future-1.11.0/future/tests/makeClusterPSOCK.R | 12 future-1.11.0/future/tests/multisession.R | 152 +- future-1.11.0/future/tests/nested_futures,mc.cores.R | 50 future-1.11.0/future/tests/plan.R | 42 future-1.11.0/future/tests/resolve.R | 108 - future-1.11.0/future/tests/rng.R | 12 future-1.11.0/future/tests/stdout.R | 108 + future-1.11.0/future/tests/uuid.R | 32 future-1.11.0/future/vignettes/future-1-overview.md.rsp | 117 +- future-1.11.0/future/vignettes/future-2-output.md.rsp | 68 + future-1.11.0/future/vignettes/future-3-topologies.md.rsp | 2 future-1.11.0/future/vignettes/future-4-issues.md.rsp | 17 future-1.11.0/future/vignettes/future-5-startup.md.rsp | 2 82 files changed, 2448 insertions(+), 1365 deletions(-)
Title: Fetch Sections of XML Scholarly Articles
Description: Get chunks of XML scholarly articles without
having to know how to work with XML. Custom mappers
for each publisher and for each article section pull
out the information you want. Works with outputs from
package 'fulltext', 'xml2' package documents, and file paths to
XML documents.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Scott Chamberlain <sckott@protonmail.com>
Diff between pubchunks versions 0.1.0 dated 2018-10-14 and 0.2.0 dated 2019-01-21
DESCRIPTION | 10 +- LICENSE | 2 MD5 | 36 ++++++---- NEWS.md | 9 ++ R/chunks-helpers.R | 7 + R/chunks-mappers.R | 105 ++++++++++++++++++----------- R/chunks.R | 123 ++++++++++++++++++++++++++--------- R/pub_guess_publisher.R | 48 ++++++++++++- R/tabularize.R | 4 - R/zzz.R | 1 README.md | 74 +++++++++++++++++++-- inst/examples/karger_1.xml |only inst/examples/mdpi_1.xml |only inst/examples/mdpi_2.xml |only inst/examples/plos_1.xml |only inst/examples/pubmed_brief_1.xml |only inst/examples/pubmed_full_1.xml |only inst/examples/pubmed_full_2.xml |only inst/examples/pubmed_full_3.xml |only man/pub_chunks.Rd | 49 ++++++++++++- man/pub_guess_publisher.Rd | 18 +++++ tests/testthat/test-pub_chunks.R | 6 - tests/testthat/test-pub_tabularize.R | 6 - 23 files changed, 383 insertions(+), 115 deletions(-)
Title: The IsoSpec Algorithm
Description: IsoSpec is a fine structure calculator used for obtaining the most
probable masses of a chemical compound given the frequencies of the composing
isotopes and their masses. It finds the smallest set of isotopologues with
a given probability. The probability is assumed to be that of the product of
multinomial distributions, each corresponding to one particular element and
parametrized by the frequencies of finding these elements in nature. These
numbers are supplied by IUPAC - the International Union of Pure and Applied
Chemistry.
Author: Mateusz Krzysztof Lacki and Michal Startek
Maintainer: Matteo Lacki <matteo.lacki@gmail.com>
Diff between IsoSpecR versions 1.9.1 dated 2018-11-18 and 1.9.2 dated 2019-01-21
DESCRIPTION | 8 +++---- MD5 | 22 ++++++++++---------- src/cwrapper.cpp | 52 ++++++++++++++++++++++++++++++++++++++++--------- src/cwrapper.h | 10 +++++++++ src/element_tables.cpp | 3 ++ src/element_tables.h | 3 ++ src/isoSpec++.cpp | 22 ++++++++++++++++++++ src/isoSpec++.h | 17 ++++++++++++++-- src/marginalTrek++.cpp | 21 +++++++++++++++++++ src/marginalTrek++.h | 14 ++++++++++++- src/tabulator.h | 8 +++---- src/unity-build.cpp | 2 - 12 files changed, 150 insertions(+), 32 deletions(-)
Title: Tukey Curve Depth and Distance in the Space of Curves
Description: Data recorded as paths or trajectories may be suitably described
by curves, which are independent of their parametrization. For the space of
such curves, the package provides functionalities for reading curves, sampling
points on curves, calculating distance between curves and for computing Tukey
curve depth of a curve w.r.t. to a bundle of curves. For details see
Lafaye De Micheaux, Mozharovskyi, and Vimond (2019) <arXiv:1901.00180>.
Author: Pavlo Mozharovskyi [aut, cre],
Pierre Lafaye De Micheaux [aut],
Myriam Vimond [aut]
Maintainer: Pavlo Mozharovskyi <pavlo.mozharovskyi@telecom-paristech.fr>
Diff between curveDepth versions 0.1.0.7 dated 2019-01-08 and 0.1.0.8 dated 2019-01-21
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/depthsCurveHfsp.cpp | 5 ++++- 3 files changed, 10 insertions(+), 7 deletions(-)
Title: 'iCalendar' Parsing
Description: A simple wrapper around the 'ical.js' library executing
'Javascript' code via 'V8' (the 'Javascript' engine driving the 'Chrome'
browser and 'Node.js' and accessible via the 'V8' R package).
This package enables users to parse 'iCalendar' files ('.ics', '.ifb',
'.iCal', '.iFBf') into lists and 'data.frames' to ultimately do statistics
on events, meetings, schedules, birthdays, and the like.
Author: Peter Meissner [aut, cre],
Philipp Kewisch [cph] (Ical.js file is is licences under MPL. Source:
https://github.com/mozilla-comm/ical.js)
Maintainer: Peter Meissner <retep.meissner@gmail.com>
Diff between ical versions 0.1.5 dated 2018-12-03 and 0.1.6 dated 2019-01-21
DESCRIPTION | 13 ++++++++----- MD5 | 4 ++-- NEWS.md | 8 +++++++- 3 files changed, 17 insertions(+), 8 deletions(-)
Title: Bayesian Fractional Polynomials
Description: Implements the Bayesian paradigm for fractional
polynomial models under the assumption of normally distributed error terms, see
Sabanes Bove, D. and Held, L. (2011) <doi:10.1007/s11222-010-9170-7>.
Author: Daniel Sabanes Bove [aut, cre],
Isaac Gravestock [aut],
Robert Davies [cph],
Stephen Moshier [cph]
Maintainer: ORPHANED
Diff between bfp versions 0.0-39.1 dated 2019-01-16 and 0.0-40 dated 2019-01-21
ChangeLog | 4 ++++ DESCRIPTION | 16 +++++++++------- MD5 | 8 ++++---- build/partial.rdb |binary data/ozone.RData |binary 5 files changed, 17 insertions(+), 11 deletions(-)
Title: Easy Handling Discrete Time Markov Chains
Description: Functions and S4 methods to create and manage discrete time Markov
chains more easily. In addition functions to perform statistical (fitting
and drawing random variates) and probabilistic (analysis of their structural
proprieties) analysis are provided.
Author: Giorgio Alfredo Spedicato [aut, cre]
(<https://orcid.org/0000-0002-0315-8888>),
Tae Seung Kang [aut],
Sai Bhargav Yalamanchi [aut],
Mildenberger Thoralf [ctb] (<https://orcid.org/0000-0001-7242-1873>),
Deepak Yadav [aut],
Ignacio Cordón [ctb],
Vandit Jain [ctb],
Toni Giorgino [ctb] (<https://orcid.org/0000-0001-6449-0596>)
Maintainer: Giorgio Alfredo Spedicato <spedicato_giorgio@yahoo.it>
Diff between markovchain versions 0.6.9.12 dated 2018-08-23 and 0.6.9.14 dated 2019-01-21
markovchain-0.6.9.12/markovchain/inst/doc/an_introduction_to_markovchain_package.Rnw |only markovchain-0.6.9.12/markovchain/inst/doc/higher_order_markov_chains.Rnw |only markovchain-0.6.9.12/markovchain/vignettes/an_introduction_to_markovchain_package.Rnw |only markovchain-0.6.9.12/markovchain/vignettes/higher_order_markov_chains.Rnw |only markovchain-0.6.9.14/markovchain/ChangeLog | 5 markovchain-0.6.9.14/markovchain/DESCRIPTION | 35 markovchain-0.6.9.14/markovchain/MD5 | 74 markovchain-0.6.9.14/markovchain/NAMESPACE | 4 markovchain-0.6.9.14/markovchain/NEWS | 7 markovchain-0.6.9.14/markovchain/R/2_probabilistic.R | 70 markovchain-0.6.9.14/markovchain/R/5_statisticalTests.R | 21 markovchain-0.6.9.14/markovchain/R/RcppExports.R | 72 markovchain-0.6.9.14/markovchain/R/sysdata.rda |binary markovchain-0.6.9.14/markovchain/build/vignette.rds |binary markovchain-0.6.9.14/markovchain/data/blanden.rda |binary markovchain-0.6.9.14/markovchain/data/craigsendi.rda |binary markovchain-0.6.9.14/markovchain/data/holson.rda |binary markovchain-0.6.9.14/markovchain/data/kullback.rda |binary markovchain-0.6.9.14/markovchain/data/preproglucacon.rda |binary markovchain-0.6.9.14/markovchain/data/rain.rda |binary markovchain-0.6.9.14/markovchain/data/sales.rda |binary markovchain-0.6.9.14/markovchain/data/tm_abs.rda |binary markovchain-0.6.9.14/markovchain/demo/00Index | 6 markovchain-0.6.9.14/markovchain/inst/doc/GSoC-2017_additions.Rmd | 1 markovchain-0.6.9.14/markovchain/inst/doc/GSoC-2017_additions.pdf |binary markovchain-0.6.9.14/markovchain/inst/doc/an_introduction_to_markovchain_package.R | 689 +------ markovchain-0.6.9.14/markovchain/inst/doc/an_introduction_to_markovchain_package.Rmd |only markovchain-0.6.9.14/markovchain/inst/doc/an_introduction_to_markovchain_package.pdf |binary markovchain-0.6.9.14/markovchain/inst/doc/complicateSteadyStates.Rmd | 4 markovchain-0.6.9.14/markovchain/inst/doc/complicateSteadyStates.pdf |binary markovchain-0.6.9.14/markovchain/inst/doc/higher_order_markov_chains.R | 48 markovchain-0.6.9.14/markovchain/inst/doc/higher_order_markov_chains.Rmd |only markovchain-0.6.9.14/markovchain/inst/doc/higher_order_markov_chains.pdf |binary markovchain-0.6.9.14/markovchain/inst/doc/markovchainCrashIntro.Rmd | 5 markovchain-0.6.9.14/markovchain/inst/doc/markovchainCrashIntro.pdf |binary markovchain-0.6.9.14/markovchain/man/meanFirstPassageTime.Rd |only markovchain-0.6.9.14/markovchain/tests/testthat/testMeanFirstPassageTimes.R |only markovchain-0.6.9.14/markovchain/vignettes/GSoC-2017_additions.Rmd | 1 markovchain-0.6.9.14/markovchain/vignettes/an_introduction_to_markovchain_package.Rmd |only markovchain-0.6.9.14/markovchain/vignettes/complicateSteadyStates.Rmd | 4 markovchain-0.6.9.14/markovchain/vignettes/higher_order_markov_chains.Rmd |only markovchain-0.6.9.14/markovchain/vignettes/markovchainBiblio.bib | 973 +++++----- markovchain-0.6.9.14/markovchain/vignettes/markovchainCrashIntro.Rmd | 5 43 files changed, 942 insertions(+), 1082 deletions(-)
Title: Working with Files from 'LexisNexis'
Description: My PhD supervisor once told me that everyone doing newspaper
analysis starts by writing code to read in files from the 'LexisNexis' newspaper
archive (retrieved e.g., from <http://www.nexis.com/> or any of the partner
sites). However, while this is a nice exercise I do recommend, not everyone has
the time. This package takes TXT files downloaded from the newspaper archive of
'LexisNexis', reads them into R and offers functions for further processing.
Author: Johannes Gruber [aut, cre]
Maintainer: Johannes Gruber <j.gruber.1@research.gla.ac.uk>
Diff between LexisNexisTools versions 0.2.0 dated 2018-09-10 and 0.2.1 dated 2019-01-21
DESCRIPTION | 13 +-- MD5 | 46 +++++----- NAMESPACE | 2 R/LexisNexisTools.R | 84 +++++++++++++------ README.md | 132 +++++++++++++++--------------- build/vignette.rds |binary inst/CITATION | 2 inst/WORDLIST |only inst/doc/demo.Rmd | 2 inst/doc/demo.html | 164 +++++++++++++++++++++----------------- man/lnt_convert.Rd | 2 tests/files/LNToutput.RDS |binary tests/files/LNToutput2.RDS |binary tests/files/corpustools.RDS |binary tests/files/diff | 12 +- tests/files/duplicates.df.RDS |binary tests/files/quanteda.RDS |binary tests/files/rDNA.RDS |binary tests/files/tidytext.RDS |binary tests/files/tm.RDS |binary tests/spelling.R |only tests/testthat/test-lnt_convert.R | 30 +++++- tests/testthat/test-lnt_diff.R | 9 +- tests/testthat/test-lnt_read.R | 19 ++-- vignettes/demo.Rmd | 2 25 files changed, 298 insertions(+), 221 deletions(-)
More information about LexisNexisTools at CRAN
Permanent link
Title: General-Purpose MCMC and SMC Samplers and Tools for Bayesian
Statistics
Description: General-purpose MCMC and SMC samplers, as well as plot and
diagnostic functions for Bayesian statistics, with a particular focus on
calibrating complex system models. Implemented samplers include various
Metropolis MCMC variants (including adaptive and/or delayed rejection MH), the
T-walk, two differential evolution MCMCs, two DREAM MCMCs, and a sequential
Monte Carlo (SMC) particle filter.
Author: Florian Hartig [aut, cre],
Francesco Minunno [aut],
Stefan Paul [aut],
David Cameron [ctb],
Tankred Ott [ctb],
Maximilian Pichler [ctb]
Maintainer: Florian Hartig <florian.hartig@biologie.uni-regensburg.de>
Diff between BayesianTools versions 0.1.5 dated 2018-07-16 and 0.1.6 dated 2019-01-21
DESCRIPTION | 14 MD5 | 84 +-- NAMESPACE | 3 NEWS | 20 R/SBC.R |only R/SMC.R | 12 R/classBayesianOutput.R | 31 + R/classLikelihood.R | 13 R/classMcmcSampler.R | 2 R/classSmcSampler.R | 2 R/marginalLikelihood.R | 29 - R/mcmcDREAM.R | 8 R/mcmcDREAMzs.R | 12 R/plotMarginals.R | 8 R/utils-Numerics.R | 26 build/vignette.rds |binary inst/doc/BayesianTools.R | 5 inst/doc/BayesianTools.Rmd | 20 inst/doc/BayesianTools.html | 836 ++++++++++++++++++------------ inst/examples/marginalLikelihoodHelp.R | 52 + man/DE.Rd | 9 man/DEzs.Rd | 12 man/DREAM.Rd | 14 man/DREAMzs.Rd | 18 man/Metropolis.Rd | 8 man/Twalk.Rd | 6 man/TwalkMove.Rd | 6 man/VSEM.Rd | 4 man/VSEMcreateLikelihood.Rd | 3 man/applySettingsDefault.Rd | 3 man/bridgesample.Rd | 3 man/calibrationTest.Rd |only man/createBayesianSetup.Rd | 4 man/createPrior.Rd | 4 man/generateParallelExecuter.Rd | 5 man/getDharmaResiduals.Rd | 3 man/getSample.Rd | 4 man/logSumExp.Rd | 5 man/marginalLikelihood.Rd | 80 ++ man/mergeChains.Rd |only man/smcSampler.Rd | 4 man/updateProposalGenerator.Rd | 4 tests/testthat/test-createBayesianSetup.R | 34 + tests/testthat/test-utils-Numerics.R |only vignettes/BayesianTools.Rmd | 20 45 files changed, 947 insertions(+), 483 deletions(-)
Title: Stylometric Multivariate Analyses
Description: Supervised and unsupervised multivariate methods, supplemented by GUI and some visualizations, to perform various analyses in the field of computational stylistics, authorship attribution, etc. For further reference, see Eder et al. (2016), <https://journal.r-project.org/archive/2016/RJ-2016-007/index.html> You are also encouraged to visit the Computational Stylistics Group's website <https://computationalstylistics.github.io/>, where a reasonable amount of information about the package and related projects are provided.
Author: Maciej Eder, Jan Rybicki, Mike Kestemont, Steffen Pielstroem
Maintainer: Maciej Eder <maciejeder@gmail.com>
Diff between stylo versions 0.6.8 dated 2018-10-08 and 0.6.9 dated 2019-01-21
DESCRIPTION | 16 - MD5 | 26 +-- NAMESPACE | 4 NEWS.md | 9 - R/change.encoding.R |only R/check.corpus.size.R |only R/check.encoding.R |only R/classify.R | 218 +++++++++++++------------- R/oppose.R | 163 ++++++++++---------- R/process.metadata.R |only R/rolling.classify.r | 205 +++++++++++++------------ R/rolling.delta.R | 365 +++++++++++++++++++++++---------------------- R/stylo.R | 265 +++++++++++++++++--------------- R/stylo.default.settings.R | 2 man/change.encoding.Rd |only man/check.encoding.Rd |only man/stylo.Rd | 65 +++++--- 17 files changed, 703 insertions(+), 635 deletions(-)
Title: Spatially Balanced Sampling
Description: Selection of spatially balanced samples. In particular, the implemented sampling designs allow to select probability samples spread over the population of interest, in any dimension and using any distance function (e.g. Euclidean distance, Manhattan distance). For more details, Benedetti R and Piersimoni F (2017) <doi:10.1002/bimj.201600194> and Benedetti R and Piersimoni F (2017) <arXiv:1710.09116>. The implementation has been done in C++ through the use of 'Rcpp' and 'RcppArmadillo'.
Author: Francesco Pantalone [aut, cre],
Roberto Benedetti [aut],
Federica Piersimoni [aut]
Maintainer: Francesco Pantalone <pantalone.fra@gmail.com>
Diff between Spbsampling versions 1.0.0 dated 2018-05-30 and 1.1.0 dated 2019-01-21
Spbsampling-1.0.0/Spbsampling/R/stprod.R |only Spbsampling-1.0.0/Spbsampling/R/stsum.R |only Spbsampling-1.0.0/Spbsampling/src/heurprod_c.cpp |only Spbsampling-1.0.0/Spbsampling/src/pwd_c.cpp |only Spbsampling-1.0.0/Spbsampling/src/swd_c.cpp |only Spbsampling-1.1.0/Spbsampling/DESCRIPTION | 25 +- Spbsampling-1.1.0/Spbsampling/MD5 | 40 ++- Spbsampling-1.1.0/Spbsampling/NAMESPACE | 4 Spbsampling-1.1.0/Spbsampling/NEWS.md |only Spbsampling-1.1.0/Spbsampling/R/RcppExports.R | 232 ++++++++++++++++------ Spbsampling-1.1.0/Spbsampling/R/Spbsampling.R | 10 Spbsampling-1.1.0/Spbsampling/build/partial.rdb |binary Spbsampling-1.1.0/Spbsampling/inst/REFERENCES.bib | 13 + Spbsampling-1.1.0/Spbsampling/man/Spbsampling.Rd | 7 Spbsampling-1.1.0/Spbsampling/man/figures |only Spbsampling-1.1.0/Spbsampling/man/hpwd.Rd | 39 ++- Spbsampling-1.1.0/Spbsampling/man/pwd.Rd | 56 +++-- Spbsampling-1.1.0/Spbsampling/man/sbi.Rd |only Spbsampling-1.1.0/Spbsampling/man/stprod.Rd | 24 +- Spbsampling-1.1.0/Spbsampling/man/stsum.Rd | 16 - Spbsampling-1.1.0/Spbsampling/man/swd.Rd | 48 ++-- Spbsampling-1.1.0/Spbsampling/src/RcppExports.cpp | 71 +++++- Spbsampling-1.1.0/Spbsampling/src/heurprod.cpp |only Spbsampling-1.1.0/Spbsampling/src/pwd.cpp |only Spbsampling-1.1.0/Spbsampling/src/sbi.cpp |only Spbsampling-1.1.0/Spbsampling/src/stprod.cpp |only Spbsampling-1.1.0/Spbsampling/src/stsum.cpp |only Spbsampling-1.1.0/Spbsampling/src/swd.cpp |only 28 files changed, 402 insertions(+), 183 deletions(-)
Title: Multiple Correspondence Analysis Variants
Description: Provides two variants of multiple correspondence analysis (ca):
multiple ca and ordered multiple ca via orthogonal polynomials of Emerson.
Author: Rosaria Lombardo and Eric J Beh
Maintainer: Rosaria Lombardo <rosaria.lombardo@unicampania.it>
Diff between MCAvariants versions 2.0 dated 2016-11-22 and 2.2 dated 2019-01-21
MCAvariants-2.0/MCAvariants/R/angle.R |only MCAvariants-2.0/MCAvariants/R/ellipse.R |only MCAvariants-2.0/MCAvariants/R/graph1.R |only MCAvariants-2.0/MCAvariants/R/mcabasicresults.R |only MCAvariants-2.0/MCAvariants/R/mcaellipse.R |only MCAvariants-2.0/MCAvariants/man/angle.Rd |only MCAvariants-2.0/MCAvariants/man/ellipse.Rd |only MCAvariants-2.0/MCAvariants/man/graph1.Rd |only MCAvariants-2.0/MCAvariants/man/mcabasicresults-class.Rd |only MCAvariants-2.0/MCAvariants/man/mcaellipse.Rd |only MCAvariants-2.2/MCAvariants/DESCRIPTION | 12 +- MCAvariants-2.2/MCAvariants/MD5 | 38 +++---- MCAvariants-2.2/MCAvariants/NAMESPACE | 20 ++-- MCAvariants-2.2/MCAvariants/R/MCAvariants.R | 73 ++++++--------- MCAvariants-2.2/MCAvariants/R/mcabasic.R | 6 - MCAvariants-2.2/MCAvariants/R/omcabasic.R | 24 +--- MCAvariants-2.2/MCAvariants/R/plot.MCAvariants.R | 68 +++++++++---- MCAvariants-2.2/MCAvariants/R/print.MCAvariants.R | 7 - MCAvariants-2.2/MCAvariants/R/tableconvert.R |only MCAvariants-2.2/MCAvariants/data/alligator.dat.rda |only MCAvariants-2.2/MCAvariants/data/satisfaction.rda |binary MCAvariants-2.2/MCAvariants/man/MCAvariants.Rd | 11 +- MCAvariants-2.2/MCAvariants/man/alligator.dat.Rd |only MCAvariants-2.2/MCAvariants/man/mcabasic.Rd | 2 MCAvariants-2.2/MCAvariants/man/omcabasic.Rd | 20 +++- MCAvariants-2.2/MCAvariants/man/plot.MCAvariants.Rd | 7 - MCAvariants-2.2/MCAvariants/man/tableconvert.Rd |only 27 files changed, 152 insertions(+), 136 deletions(-)
Title: XPtr Add-Ons for 'Rcpp'
Description: Provides the means to compile user-supplied C++ functions with
'Rcpp' and retrieve an 'XPtr' that can be passed to other C++ components.
Author: Iñaki Ucar [aut, cph, cre] (<https://orcid.org/0000-0001-6403-5550>)
Maintainer: Iñaki Ucar <iucar@fedoraproject.org>
Diff between RcppXPtrUtils versions 0.1.0 dated 2017-08-04 and 0.1.1 dated 2019-01-21
DESCRIPTION | 20 ++++++++-------- LICENSE | 2 - MD5 | 11 ++++----- NEWS.md |only R/check.R | 6 ++-- README.md | 69 +++++++++++++++++++++++++++++++++++---------------------- man/cppXPtr.Rd | 6 ++-- 7 files changed, 66 insertions(+), 48 deletions(-)
Title: Tests Controlling the FDR / FWER under Certain Copula Models
Description: Implements tests controlling the false discovery rate (FDR) / family-wise error rate (FWER) for some copula models.
Author: Jonathan von Schroeder [aut, cre],
Taras Bodnar [aut],
Jens Stange [aut]
Maintainer: Jonathan von Schroeder <jvs@uni-bremen.de>
Diff between MHTcop versions 0.1.0 dated 2018-04-05 and 0.1.1 dated 2019-01-21
MHTcop-0.1.0/MHTcop/R/test.ac_fdr.R |only MHTcop-0.1.1/MHTcop/DESCRIPTION | 8 ++--- MHTcop-0.1.1/MHTcop/MD5 | 28 ++++++++++---------- MHTcop-0.1.1/MHTcop/R/ac_fdr.test.R |only MHTcop-0.1.1/MHTcop/build/vignette.rds |binary MHTcop-0.1.1/MHTcop/inst/doc/fdr-test.Rmd | 2 - MHTcop-0.1.1/MHTcop/inst/doc/fdr-test.html | 28 +++++++++++++++++--- MHTcop-0.1.1/MHTcop/inst/doc/fwer-support-test.Rmd | 2 - MHTcop-0.1.1/MHTcop/inst/doc/fwer-support-test.html | 28 +++++++++++++++++--- MHTcop-0.1.1/MHTcop/inst/doc/fwer-ztest.Rmd | 2 - MHTcop-0.1.1/MHTcop/inst/doc/fwer-ztest.html | 28 +++++++++++++++++--- MHTcop-0.1.1/MHTcop/man/ac_fdr.test.Rd | 2 - MHTcop-0.1.1/MHTcop/man/fwer.support_test.Rd | 4 +- MHTcop-0.1.1/MHTcop/vignettes/fdr-test.Rmd | 2 - MHTcop-0.1.1/MHTcop/vignettes/fwer-support-test.Rmd | 2 - MHTcop-0.1.1/MHTcop/vignettes/fwer-ztest.Rmd | 2 - 16 files changed, 102 insertions(+), 36 deletions(-)
Title: Quantify the Robustness of Causal Inferences
Description: Statistical methods that quantify the conditions necessary to alter
inferences, also known as sensitivity analysis, are becoming increasingly
important to a variety of quantitative sciences. A series of recent works,
including Frank (2000) <doi:10.1177/0049124100029002001> and Frank et al.
(2013) <doi:10.3102/0162373713493129> extend previous sensitivity analyses
by considering the characteristics of omitted variables or unobserved cases
that would change an inference if such variables or cases were observed. These
analyses generate statements such as "an omitted variable would have to be
correlated at xx with the predictor of interest (e.g., treatment) and outcome
to invalidate an inference of a treatment effect". Or "one would have to replace
pp percent of the observed data with null hypothesis cases to invalidate the
inference". We implement these recent developments of sensitivity analysis and
provide modules to calculate these two robustness indices and generate such
statements in R. In particular, the functions konfound(), pkonfound() and
mkonfound() allow users to calculate the robustness of inferences for a user's
own model, a single published study and multiple studies respectively.
Author: Joshua M Rosenberg [aut, cre],
Ran Xu [ctb],
Kenneth A Frank [ctb]
Maintainer: Joshua M Rosenberg <jmichaelrosenberg@gmail.com>
Diff between konfound versions 0.1.0 dated 2018-04-06 and 0.1.1 dated 2019-01-21
konfound-0.1.0/konfound/inst/doc/Introduction_to_konfound.R |only konfound-0.1.0/konfound/inst/doc/Introduction_to_konfound.Rmd |only konfound-0.1.0/konfound/inst/doc/Introduction_to_konfound.html |only konfound-0.1.0/konfound/vignettes/Introduction_to_konfound.Rmd |only konfound-0.1.1/konfound/DESCRIPTION | 10 ++-- konfound-0.1.1/konfound/LICENSE | 4 - konfound-0.1.1/konfound/MD5 | 24 +++++----- konfound-0.1.1/konfound/NEWS.md | 4 + konfound-0.1.1/konfound/R/helper_output_print.R | 4 - konfound-0.1.1/konfound/R/helper_plot_correlation.R | 2 konfound-0.1.1/konfound/R/zzz.R | 4 - konfound-0.1.1/konfound/README.md | 18 +++++-- konfound-0.1.1/konfound/build/vignette.rds |binary konfound-0.1.1/konfound/inst/doc/introduction-to-konfound.R |only konfound-0.1.1/konfound/inst/doc/introduction-to-konfound.Rmd |only konfound-0.1.1/konfound/inst/doc/introduction-to-konfound.html |only konfound-0.1.1/konfound/vignettes/introduction-to-konfound.Rmd |only 17 files changed, 42 insertions(+), 28 deletions(-)
Title: Stochastic Island Biogeography Theory Made Easy
Description: Tools to develop stochastic models based on the Theory of Island
Biogeography (TIB) of MacArthur and Wilson (1967) <DOI:10.1023/A:1016393430551>
and extensions. The package implements methods to estimate colonization and
extinction rates (including environmental variables) given presence-absence
data, simulate community assembly, and perform model selection.
Author: Vicente Jimenez [aut, cre],
David Alonso [aut]
Maintainer: Vicente Jimenez <vicente.jimenez.ontiveros@gmail.com>
Diff between island versions 0.2.1 dated 2018-05-09 and 0.2.2 dated 2019-01-21
DESCRIPTION | 10 +- MD5 | 32 +++---- build/vignette.rds |binary inst/doc/IBDmodels.Rmd | 2 inst/doc/IBDmodels.html | 50 ++++++++---- inst/doc/detectability.Rmd | 2 inst/doc/detectability.html | 52 +++++++++--- inst/doc/island.Rmd | 2 inst/doc/island.html | 154 +++++++++++++++++++++---------------- man/all_environmental_fit.Rd | 3 man/irregular_multiple_datasets.Rd | 5 - man/irregular_single_dataset.Rd | 5 - man/mss_cedp.Rd | 4 man/regular_sampling_scheme.Rd | 4 vignettes/IBDmodels.Rmd | 2 vignettes/detectability.Rmd | 2 vignettes/island.Rmd | 2 17 files changed, 203 insertions(+), 128 deletions(-)
Title: Iterative Max-Min Entropy Margin-Maximization with Interaction
Terms for Feature Selection
Description: Based on large margin principle, this package performs feature selection methods: "IM4E"(Iterative Margin-Maximization under Max-Min Entropy Algorithm); "imIM4E"(imbalance Iterative Margin-Maximization under Max-Min Entropy Algorithm); "Immigrate"(Iterative Max-Min Entropy Margin-Maximization with Interaction Terms Algorithm); "BIM"(Boosted version of IMMIGRATE algorithm); "Simba"(Iterative Search Margin Based Algorithm); "LFE"(Local Feature Extraction Algorithm). This package also performs prediction for the above feature selection methods. See Zhao et al. (2018) <arXiv:1810.02658> for more details.
Author: Ruzhang Zhao, Pengyu Hong, Jun S. Liu
Maintainer: Ruzhang Zhao<zrz6787@gmail.com>
Diff between Immigrate versions 0.0.1 dated 2018-10-14 and 0.0.2 dated 2019-01-21
Immigrate-0.0.1/Immigrate/R/pred.IM4E.R |only Immigrate-0.0.1/Immigrate/R/pred.Immigrate.R |only Immigrate-0.0.1/Immigrate/R/pred.LFE.R |only Immigrate-0.0.1/Immigrate/man/pred.IM4E.Rd |only Immigrate-0.0.1/Immigrate/man/pred.Immigrate.Rd |only Immigrate-0.0.1/Immigrate/man/pred.LFE.Rd |only Immigrate-0.0.2/Immigrate/DESCRIPTION | 13 +- Immigrate-0.0.2/Immigrate/MD5 | 63 ++++++++------ Immigrate-0.0.2/Immigrate/NAMESPACE | 13 +- Immigrate-0.0.2/Immigrate/R/BIM.R |only Immigrate-0.0.2/Immigrate/R/IM4E.R | 14 ++- Immigrate-0.0.2/Immigrate/R/Immigrate.R | 31 +++++- Immigrate-0.0.2/Immigrate/R/LFE.R | 23 ++--- Immigrate-0.0.2/Immigrate/R/RcppExports.R | 20 +++- Immigrate-0.0.2/Immigrate/R/Simba.R | 22 ++-- Immigrate-0.0.2/Immigrate/R/imIM4E.R | 10 +- Immigrate-0.0.2/Immigrate/R/one.IM4E.R | 15 --- Immigrate-0.0.2/Immigrate/R/one.Immigrate.R | 7 - Immigrate-0.0.2/Immigrate/R/one.boost.Immigrate.R |only Immigrate-0.0.2/Immigrate/R/one.imIM4E.R | 1 Immigrate-0.0.2/Immigrate/R/pred.values.R | 2 Immigrate-0.0.2/Immigrate/R/predict.BIM.R |only Immigrate-0.0.2/Immigrate/R/predict.IM4E.R |only Immigrate-0.0.2/Immigrate/R/predict.Immigrate.R |only Immigrate-0.0.2/Immigrate/R/predict.LFE.R |only Immigrate-0.0.2/Immigrate/README.md |only Immigrate-0.0.2/Immigrate/man/BIM.Rd |only Immigrate-0.0.2/Immigrate/man/IM4E.Rd | 8 - Immigrate-0.0.2/Immigrate/man/Immigrate.Rd | 22 +++- Immigrate-0.0.2/Immigrate/man/LFE.Rd | 6 - Immigrate-0.0.2/Immigrate/man/Simba.Rd | 6 - Immigrate-0.0.2/Immigrate/man/imIM4E.Rd | 8 - Immigrate-0.0.2/Immigrate/man/one.IM4E.Rd | 12 -- Immigrate-0.0.2/Immigrate/man/one.Immigrate.Rd | 8 - Immigrate-0.0.2/Immigrate/man/predict.BIM.Rd |only Immigrate-0.0.2/Immigrate/man/predict.IM4E.Rd |only Immigrate-0.0.2/Immigrate/man/predict.Immigrate.Rd |only Immigrate-0.0.2/Immigrate/man/predict.LFE.Rd |only Immigrate-0.0.2/Immigrate/src/BIMCpp.cpp |only Immigrate-0.0.2/Immigrate/src/BIMMACpp.cpp |only Immigrate-0.0.2/Immigrate/src/ImmigrateCpp.cpp | 13 +- Immigrate-0.0.2/Immigrate/src/ImmigrateSampleCpp.cpp |only Immigrate-0.0.2/Immigrate/src/RcppExports.cpp | 85 ++++++++++++++++--- 43 files changed, 251 insertions(+), 151 deletions(-)
Title: Handling Taxonomic Lists
Description: Handling taxonomic lists through objects of class 'taxlist'.
This package provides functions to import species lists from 'Turboveg'
(<https://www.synbiosys.alterra.nl/turboveg>) and the possibility to create
backups from resulting R-objects.
Also quick displays are implemented as summary-methods.
Author: Miguel Alvarez [aut, cre] (<https://orcid.org/0000-0003-1500-1834>)
Maintainer: Miguel Alvarez <kamapu78@gmail.com>
Diff between taxlist versions 0.1.5 dated 2018-06-29 and 0.1.6 dated 2019-01-21
DESCRIPTION | 20 ++-- MD5 | 42 +++++---- NAMESPACE | 2 NEWS.md | 19 ++++ R/accepted_name.R | 2 R/add_synonym.R | 6 + R/backup_object.R | 10 +- R/clean_strings.R |only R/count_taxa.R |only R/load_last.R | 11 +- R/match_names.R | 11 ++ R/print_name.R | 22 ++--- R/summary.R | 4 R/taxlist-class.R | 5 - build/vignette.rds |binary data/Easplist.rda |binary inst/doc/taxlist-intro.R | 11 -- inst/doc/taxlist-intro.Rmd | 39 --------- inst/doc/taxlist-intro.html | 187 ++++++++++++++++++-------------------------- man/clean_strings.Rd |only man/count_taxa.Rd |only man/match_names.Rd | 6 - man/print_name.Rd | 5 - vignettes/taxlist-intro.Rmd | 39 --------- 24 files changed, 183 insertions(+), 258 deletions(-)
Title: Statistics Norway's Miscellaneous Tools
Description: Functions used by other packages from Statistics Norway are gathered. General data manipulation functions, and functions for hierarchical computations are included. The hierarchy specification functions are useful within statistical disclosure control.
Author: Øyvind Langsrud [aut, cre],
Bjørn-Helge Mevik [cph]
Maintainer: Øyvind Langsrud <oyl@ssb.no>
Diff between SSBtools versions 0.3.0 dated 2018-08-22 and 0.4.0 dated 2019-01-21
SSBtools-0.3.0/SSBtools/README.md |only SSBtools-0.4.0/SSBtools/DESCRIPTION | 23 SSBtools-0.4.0/SSBtools/MD5 | 108 +-- SSBtools-0.4.0/SSBtools/NAMESPACE | 19 SSBtools-0.4.0/SSBtools/R/AddLeadingZeros.R | 7 SSBtools-0.4.0/SSBtools/R/AutoHierarchies.R |only SSBtools-0.4.0/SSBtools/R/AutoSplit.r | 1 SSBtools-0.4.0/SSBtools/R/DataFrameToMatrix.R | 7 SSBtools-0.4.0/SSBtools/R/FormulaSums.R |only SSBtools-0.4.0/SSBtools/R/Hierarchies2ModelMatrix.R |only SSBtools-0.4.0/SSBtools/R/HierarchyCompute.R | 383 +++++++----- SSBtools-0.4.0/SSBtools/R/MakeHierFormula.R |only SSBtools-0.4.0/SSBtools/R/MatrixPaste.R |only SSBtools-0.4.0/SSBtools/R/PatternMatching.R | 4 SSBtools-0.4.0/SSBtools/R/RbindAllCbindIdMatch.r | 2 SSBtools-0.4.0/SSBtools/R/RowGroups.R | 2 SSBtools-0.4.0/SSBtools/R/SSBtoolsData.R |only SSBtools-0.4.0/SSBtools/R/Stack.R | 2 SSBtools-0.4.0/SSBtools/R/forEasySdcTable.R | 6 SSBtools-0.4.0/SSBtools/R/matlabColon.R | 30 SSBtools-0.4.0/SSBtools/man/AddLeadingZeros.Rd | 6 SSBtools-0.4.0/SSBtools/man/AutoHierarchies.Rd |only SSBtools-0.4.0/SSBtools/man/AutoSplit.Rd | 3 SSBtools-0.4.0/SSBtools/man/CbindIdMatch.Rd | 3 SSBtools-0.4.0/SSBtools/man/CharacterDataFrame.Rd | 3 SSBtools-0.4.0/SSBtools/man/CrossCodeFrames.Rd | 3 SSBtools-0.4.0/SSBtools/man/CrossDataDummyHierarchies.Rd | 7 SSBtools-0.4.0/SSBtools/man/DataDummyHierarchy.Rd | 3 SSBtools-0.4.0/SSBtools/man/DataFrameToMatrix.Rd | 3 SSBtools-0.4.0/SSBtools/man/DimList2Hierarchy.Rd |only SSBtools-0.4.0/SSBtools/man/DimList2Hrc.Rd |only SSBtools-0.4.0/SSBtools/man/DummyHierarchy.Rd | 3 SSBtools-0.4.0/SSBtools/man/FactorLevCorr.Rd | 3 SSBtools-0.4.0/SSBtools/man/FindCommonCells.Rd | 3 SSBtools-0.4.0/SSBtools/man/FindDimLists.Rd | 7 SSBtools-0.4.0/SSBtools/man/FindTableGroup.Rd | 3 SSBtools-0.4.0/SSBtools/man/FixHierarchy.Rd | 4 SSBtools-0.4.0/SSBtools/man/ForceCharacterDataFrame.Rd | 3 SSBtools-0.4.0/SSBtools/man/ForceFactorDataFrame.Rd | 3 SSBtools-0.4.0/SSBtools/man/FormulaSums.Rd |only SSBtools-0.4.0/SSBtools/man/HierarchicalGroups.Rd | 3 SSBtools-0.4.0/SSBtools/man/HierarchicalGroups2.Rd |only SSBtools-0.4.0/SSBtools/man/HierarchicalGroups3.Rd |only SSBtools-0.4.0/SSBtools/man/HierarchicalWildcardGlobbing.Rd | 8 SSBtools-0.4.0/SSBtools/man/Hierarchies2ModelMatrix.Rd |only SSBtools-0.4.0/SSBtools/man/Hierarchy2Formula.Rd |only SSBtools-0.4.0/SSBtools/man/HierarchyCompute.Rd | 27 SSBtools-0.4.0/SSBtools/man/HierarchyComputeDummy.Rd |only SSBtools-0.4.0/SSBtools/man/HierarchyFix.Rd | 7 SSBtools-0.4.0/SSBtools/man/MakeHierFormula.Rd |only SSBtools-0.4.0/SSBtools/man/Match.Rd | 3 SSBtools-0.4.0/SSBtools/man/MatrixPaste.Rd |only SSBtools-0.4.0/SSBtools/man/MatrixToDataFrame.Rd | 3 SSBtools-0.4.0/SSBtools/man/Number.Rd | 9 SSBtools-0.4.0/SSBtools/man/RbindAll.Rd | 3 SSBtools-0.4.0/SSBtools/man/RowGroups.Rd | 3 SSBtools-0.4.0/SSBtools/man/SSBtoolsData.Rd | 10 SSBtools-0.4.0/SSBtools/man/SortRows.Rd | 3 SSBtools-0.4.0/SSBtools/man/Stack.Rd | 3 SSBtools-0.4.0/SSBtools/man/Unstack.Rd | 3 SSBtools-0.4.0/SSBtools/man/WildcardGlobbing.Rd | 3 SSBtools-0.4.0/SSBtools/man/WildcardGlobbingVector.Rd | 3 SSBtools-0.4.0/SSBtools/man/matlabColon.Rd | 17 SSBtools-0.4.0/SSBtools/tests |only 64 files changed, 542 insertions(+), 220 deletions(-)
Title: Statistical Inference for Systems of Ordinary Differential
Equations using Separable Integral-Matching
Description: Implements statistical inference for systems of ordinary differential equations,
that uses the integral-matching criterion and takes advantage of the separability of parameters,
in order to obtain initial parameter estimates for nonlinear least squares optimization.
Dattner & Yaari (2018) <arXiv:1807.04202>.
Dattner et al. (2017) <doi:10.1098/rsif.2016.0525>.
Dattner & Klaassen (2015) <doi:10.1214/15-EJS1053>.
Author: Itai Dattner [aut],
Rami Yaari [aut, cre]
Maintainer: Rami Yaari <ramiyaari@gmail.com>
Diff between simode versions 1.1.1 dated 2018-10-05 and 1.1.2 dated 2019-01-21
simode-1.1.1/simode/inst/R_pacakge_simode_041018.Rnw |only simode-1.1.1/simode/inst/doc/R_package_simode_041018.pdf |only simode-1.1.1/simode/inst/doc/R_package_simode_041018.pdf.asis |only simode-1.1.1/simode/vignettes/R_package_simode_041018.pdf.asis |only simode-1.1.2/simode/DESCRIPTION | 8 - simode-1.1.2/simode/MD5 | 30 ++-- simode-1.1.2/simode/R/calc_loss.R | 17 +- simode-1.1.2/simode/R/simode.R | 71 ++++++---- simode-1.1.2/simode/R/simode_fit.R | 11 - simode-1.1.2/simode/R/simode_multi.R | 56 +++++-- simode-1.1.2/simode/R/simode_profile.R | 13 + simode-1.1.2/simode/build/vignette.rds |binary simode-1.1.2/simode/demo/CLVEx.R | 36 +---- simode-1.1.2/simode/inst/R_pacakge_simode.Rnw |only simode-1.1.2/simode/inst/doc/R_package_simode.pdf |only simode-1.1.2/simode/inst/doc/R_package_simode.pdf.asis |only simode-1.1.2/simode/inst/simode-manual.pdf |binary simode-1.1.2/simode/man/simode.Rd | 22 ++- simode-1.1.2/simode/man/simode.control.Rd | 10 - simode-1.1.2/simode/vignettes/R_package_simode.pdf.asis |only 20 files changed, 167 insertions(+), 107 deletions(-)
Title: Estimating Disease Prevalence from Registry Data
Description: Estimates disease prevalence for a given index date, using existing
registry data extended with Monte Carlo simulations.
Author: Stuart Lacy [cre, aut],
Simon Crouch [aut],
Stephanie Lax [aut]
Maintainer: Stuart Lacy <stuart.lacy@york.ac.uk>
Diff between rprev versions 1.0.0 dated 2018-06-07 and 1.0.1 dated 2019-01-21
DESCRIPTION | 16 MD5 | 108 +-- NAMESPACE | 62 - NEWS.md | 106 +-- R/data.R | 76 +- R/diagnostics.R | 98 +- R/fixedcure.R | 340 +++++----- R/flexsurv.R | 242 +++---- R/homogeneous_poisson.R | 252 +++---- R/inc_model.R | 44 - R/incidence.R | 486 +++++++------- R/point_estimate.R | 196 ++--- R/prevalence.R | 1028 +++++++++++++++--------------- R/rprev.R | 54 - R/surv_model.R | 64 - R/survfit.prev.R | 345 +++++----- R/survregmin.R | 238 +++---- R/test_custom_models.R | 320 ++++----- R/utils.R | 136 ++-- README.md | 31 build/vignette.rds |binary inst/doc/diagnostics.R | 240 +++---- inst/doc/diagnostics.Rmd | 454 ++++++------- inst/doc/diagnostics.html | 790 +++++++++++------------ inst/doc/user_guide.R | 492 +++++++------- inst/doc/user_guide.Rmd | 890 +++++++++++++------------- inst/doc/user_guide.html | 1154 +++++++++++++++++----------------- man/UKmortality.Rd | 48 - man/counted_prevalence.Rd | 72 +- man/draw_incident_population.Rd | 64 - man/extract_covars.Rd | 46 - man/fixed_cure.Rd | 118 +-- man/plot.incdiag.Rd | 80 +- man/plot.survfit.prev.Rd | 80 +- man/predict_survival_probability.Rd | 52 - man/prevalence.Rd | 345 +++++----- man/prevsim.Rd | 62 - man/rprev.Rd | 62 - man/sim_prevalence.Rd | 100 +- man/summary.survfit.prev.Rd | 96 +- man/survfit.prevalence.Rd | 58 - man/test_homogeneity.Rd | 172 ++--- man/test_prevalence_fit.Rd | 73 +- man/validate_incidence_model.Rd | 56 - man/validate_survival_model.Rd | 65 - tests/testthat.R | 8 tests/testthat/test_curemodels.R | 142 ++-- tests/testthat/test_diagnostics.R | 100 +- tests/testthat/test_incidence.R | 42 - tests/testthat/test_incidence_model.R | 316 ++++----- tests/testthat/test_prevalence.R | 408 ++++++------ tests/testthat/test_survival_model.R | 232 +++--- vignettes/bibliography.bib | 104 +-- vignettes/diagnostics.Rmd | 454 ++++++------- vignettes/user_guide.Rmd | 890 +++++++++++++------------- 55 files changed, 6324 insertions(+), 6283 deletions(-)
Title: A Fast Implementation of Random Forests
Description: A fast implementation of Random Forests, particularly suited for high
dimensional data. Ensembles of classification, regression, survival and
probability prediction trees are supported. Data from genome-wide association
studies can be analyzed efficiently. In addition to data frames, datasets of
class 'gwaa.data' (R package 'GenABEL') and 'dgCMatrix' (R package 'Matrix')
can be directly analyzed.
Author: Marvin N. Wright [aut, cre], Stefan Wager [ctb], Philipp Probst [ctb]
Maintainer: Marvin N. Wright <cran@wrig.de>
Diff between ranger versions 0.10.1 dated 2018-06-04 and 0.11.0 dated 2019-01-21
ranger-0.10.1/ranger/tests/test_gwaa.Rds |only ranger-0.11.0/ranger/DESCRIPTION | 10 ranger-0.11.0/ranger/MD5 | 95 +++--- ranger-0.11.0/ranger/NEWS | 7 ranger-0.11.0/ranger/R/RcppExports.R | 4 ranger-0.11.0/ranger/R/csrf.R | 2 ranger-0.11.0/ranger/R/formula.R | 5 ranger-0.11.0/ranger/R/holdoutRF.R | 4 ranger-0.11.0/ranger/R/importance.R | 2 ranger-0.11.0/ranger/R/infinitesimalJackknife.R | 2 ranger-0.11.0/ranger/R/predict.R | 19 - ranger-0.11.0/ranger/R/ranger.R | 85 ++++-- ranger-0.11.0/ranger/inst/include/ranger.h | 2 ranger-0.11.0/ranger/man/csrf.Rd | 5 ranger-0.11.0/ranger/man/holdoutRF.Rd | 2 ranger-0.11.0/ranger/man/importance_pvalues.Rd | 2 ranger-0.11.0/ranger/man/parse.formula.Rd | 4 ranger-0.11.0/ranger/man/predict.ranger.Rd | 8 ranger-0.11.0/ranger/man/predict.ranger.forest.Rd | 8 ranger-0.11.0/ranger/man/ranger.Rd | 45 +-- ranger-0.11.0/ranger/src/Data.cpp | 25 + ranger-0.11.0/ranger/src/Data.h | 4 ranger-0.11.0/ranger/src/DataSparse.h | 6 ranger-0.11.0/ranger/src/Forest.cpp | 108 ++++++- ranger-0.11.0/ranger/src/Forest.h | 17 - ranger-0.11.0/ranger/src/ForestProbability.cpp | 1 ranger-0.11.0/ranger/src/ForestRegression.cpp | 1 ranger-0.11.0/ranger/src/RcppExports.cpp | 12 ranger-0.11.0/ranger/src/Tree.cpp | 139 +++++++--- ranger-0.11.0/ranger/src/Tree.h | 21 + ranger-0.11.0/ranger/src/TreeClassification.cpp | 67 ++-- ranger-0.11.0/ranger/src/TreeProbability.cpp | 68 ++-- ranger-0.11.0/ranger/src/TreeRegression.cpp | 69 +++- ranger-0.11.0/ranger/src/TreeSurvival.cpp | 76 +++-- ranger-0.11.0/ranger/src/globals.h | 1 ranger-0.11.0/ranger/src/rangerCpp.cpp | 12 ranger-0.11.0/ranger/src/utility.cpp | 9 ranger-0.11.0/ranger/src/utility.h | 13 ranger-0.11.0/ranger/tests/test_gwaa.rds |only ranger-0.11.0/ranger/tests/testthat/test_classification.R | 9 ranger-0.11.0/ranger/tests/testthat/test_formula.R |only ranger-0.11.0/ranger/tests/testthat/test_genabel.R | 54 ++- ranger-0.11.0/ranger/tests/testthat/test_importance.R | 6 ranger-0.11.0/ranger/tests/testthat/test_importance_pvalues.R | 2 ranger-0.11.0/ranger/tests/testthat/test_inbag.R | 12 ranger-0.11.0/ranger/tests/testthat/test_interface.R | 91 ++++++ ranger-0.11.0/ranger/tests/testthat/test_ranger.R | 71 +++++ ranger-0.11.0/ranger/tests/testthat/test_sparse.R | 7 ranger-0.11.0/ranger/tests/testthat/test_splitweights.R | 2 ranger-0.11.0/ranger/tests/testthat/test_unordered.R | 25 + 50 files changed, 876 insertions(+), 363 deletions(-)
Title: Bayesian Structure Learning in Graphical Models using
Birth-Death MCMC
Description: Provides statistical tools for Bayesian structure learning in undirected graphical models for continuous, discrete, and mixed data. The package is implemented the recent improvements in the Bayesian graphical models literature, including Mohammadi and Wit (2015) <doi:10.1214/14-BA889>, Letac et al. (2018) <arXiv:1706.04416>, Dobra and Mohammadi (2018) <doi:10.1214/18-AOAS1164>, Mohammadi et al. (2017) <doi:10.1111/rssc.12171>. To speed up the computations, the BDMCMC sampling algorithms are implemented in parallel using OpenMP in C++.
Author: Reza Mohammadi [aut, cre] <https://orcid.org/0000-0001-9538-0648>,
Ernst Wit [aut],
Adrian Dobra [ctb]
Maintainer: Reza Mohammadi <a.mohammadi@uva.nl>
Diff between BDgraph versions 2.53 dated 2018-11-14 and 2.54 dated 2019-01-21
DESCRIPTION | 10 ++-- MD5 | 76 ++++++++++++++++----------------- R/bdgraph.R | 8 +-- inst/CITATION | 21 +++++++-- inst/doc/vignette.pdf |binary man/BDgraph-package.Rd | 10 ++-- man/bdgraph.Rd | 15 +++--- man/bdgraph.sim.Rd | 2 man/bdgraph.ts.Rd | 4 - man/compare.Rd | 2 man/gnorm.Rd | 2 man/graph.sim.Rd | 4 - man/pgraph.Rd | 4 - man/plinks.Rd | 4 - man/plot.bdgraph.Rd | 4 - man/plot.graph.Rd | 4 - man/plot.sim.Rd | 6 -- man/plotcoda.Rd | 4 - man/plotroc.Rd | 4 - man/print.bdgraph.Rd | 4 - man/print.sim.Rd | 2 man/rgwish.Rd | 4 - man/rwish.Rd | 4 - man/select.Rd | 4 - man/summary.bdgraph.Rd | 4 - src/Makevars | 2 src/MyLapack.cpp | 4 - src/bd_for_ts.cpp | 18 +------- src/copula.cpp | 20 ++++---- src/gcgm_DMH.cpp | 96 +++++++++++++++++++++--------------------- src/gcgm_bd.cpp | 72 ++++++++++++++++---------------- src/ggm_DMH.cpp | 74 ++++++++++++++++---------------- src/ggm_bd.cpp | 58 ++++++++++++------------- src/ggm_mpl_bd.cpp | 56 ++++++++++++------------ src/gm_mpl_bd_dis.cpp | 110 ++++++++++++++++++++++++------------------------- src/gm_rj.cpp | 32 +++++++------- src/matrix.cpp | 11 ++-- src/rgwish.cpp | 2 src/util.h | 10 ---- 39 files changed, 382 insertions(+), 389 deletions(-)
Title: Import, Manipulate and Explore the Results of an 'Antares'
Simulation
Description: Import, manipulate and explore results generated by 'Antares', a
powerful open source software developed by RTE (Réseau de Transport d’Électricité) to simulate and study electric power systems
(more information about 'Antares' here : <https://github.com/AntaresSimulatorTeam/Antares_Simulator>). You can see the results of several ANTARES studies here : <http://bpnumerique.rte-france.com/>.
Author: Jalal-Edine ZAWAM [aut],
Frederic Breant [aut, cre],
Francois Guillem [aut],
Benoit Thieurmel [aut],
Titouan Robert [aut],
RTE [cph]
Maintainer: Frederic Breant <frederic.breant@rte-france.com>
Diff between antaresRead versions 2.2.1 dated 2018-10-18 and 2.2.2 dated 2019-01-21
DESCRIPTION | 17 LICENSE | 2 MD5 | 144 - NEWS | 5 R/asAntaresDataList.R | 140 - R/asAntaresDataTable.R | 102 - R/changeTimeStep.R | 410 ++--- R/copyToClipboard.R | 172 +- R/extractDataList.R | 208 +- R/getLinks.R | 186 +- R/groupByDistrict.R | 168 +- R/h5_antaresReadH5.R | 1912 ++++++++++++------------- R/h5_readInputs.R | 108 - R/h5_setSimulationPathH5.R | 154 +- R/h5_timeManagement.R | 266 +-- R/h5_transformData.R | 72 R/h5_writeData.R | 314 ++-- R/h5_writeH5ByYear.R | 984 ++++++------ R/h5utils.R | 92 - R/importInput.R | 518 +++--- R/importOutput.R | 1048 ++++++------- R/readAntares.R | 1512 +++++++++---------- R/readBindingConstraints.R | 318 ++-- R/readClusterDesc.R | 166 +- R/readIniFile.R | 118 - R/readInputTS.R | 278 +-- R/readLayout.R | 338 ++-- R/removeVirtualAreas.R | 1008 ++++++------- R/reorderCols.R | 100 - R/setSimulationPath.R | 1066 ++++++------- R/showAliases.R | 160 +- R/simOptions.R | 118 - R/subset.R | 264 +-- R/viewAntares.R | 108 - R/zzz.R | 528 +++--- build/vignette.rds |binary inst/doc/antares.Rmd | 316 ++-- inst/doc/antares.html | 28 inst/doc/antaresH5.Rmd | 331 ++-- inst/doc/antaresH5.html | 42 inst/format_output/h5Struct.csv | 522 +++--- inst/format_output/tableOutput.csv | 502 +++--- tests/testthat.R | 34 tests/testthat/helper_init.R | 230 +-- tests/testthat/test-.timeIdToDate.R | 118 - tests/testthat/test-RemoveInputColumn.R | 102 - tests/testthat/test-aliases.R | 86 - tests/testthat/test-asAntaresData.R | 140 - tests/testthat/test-bindingConstraints.R | 74 tests/testthat/test-changeTimeStep.R | 102 - tests/testthat/test-extractDataList.R | 78 - tests/testthat/test-getAreas.R | 106 - tests/testthat/test-getStartDate.R | 272 +-- tests/testthat/test-groupByDistrict.R | 50 tests/testthat/test-h5ReadAntares.R | 326 ++-- tests/testthat/test-h5_nodata.R | 24 tests/testthat/test-h5_readInputs.R | 72 tests/testthat/test-h5_setSimulationPathH5.R | 30 tests/testthat/test-h5_write.R | 106 - tests/testthat/test-print.R | 86 - tests/testthat/test-readAntares.R | 310 ++-- tests/testthat/test-readAntares_inputs.R | 128 - tests/testthat/test-readAntares_mustRun.R | 154 +- tests/testthat/test-readAntares_time_columns.R | 64 tests/testthat/test-readInputTS.R | 248 +-- tests/testthat/test-readLayout.R | 90 - tests/testthat/test-read_optim_criteria.R | 40 tests/testthat/test-removeVirtualAreas.R | 644 ++++---- tests/testthat/test-setup.R | 350 ++-- tests/testthat/test-subset_antaresDataList.R | 158 +- tests/testthat/test-viewAntares.R | 90 - vignettes/antares.Rmd | 316 ++-- vignettes/antaresH5.Rmd | 331 ++-- 73 files changed, 9926 insertions(+), 9878 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-14 0.1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-01-27 0.3.6
2015-12-08 0.3.4
Title: TH's Data Archive
Description: Contains data sets used in other packages Torsten Hothorn
maintains.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between TH.data versions 1.0-9 dated 2018-07-10 and 1.0-10 dated 2019-01-21
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- inst/rda/Primary_endpoint_data.rda |binary 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Loading Facebook and Instagram Advertising Data from
'Smartly.io'
Description: Aims at loading Facebook and Instagram advertising data from
'Smartly.io' into R. 'Smartly.io' is an online advertising service that enables
advertisers to display commercial ads on social media networks (see <http://www.smartly.io/> for more information).
The package offers an interface to query the 'Smartly.io' API and loads data directly into R for further data processing and data analysis.
Author: Johannes Burkhardt <johannes.burkhardt@gmail.com>
Maintainer: Johannes Burkhardt <johannes.burkhardt@gmail.com>
Diff between RSmartlyIO versions 0.1.2 dated 2017-06-08 and 0.1.3 dated 2019-01-21
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS | 5 +++++ R/getSmartlyData.R | 6 +++--- man/getSmartlyData.Rd | 5 ++--- 5 files changed, 19 insertions(+), 15 deletions(-)
Title: Calculate Quantitative Ethnobotany Indices
Description: Calculate common quantitative ethnobotany indices to assess the cultural significance of plant species based on informant consensus. The package closely follows the paper by Tardio and Pardo-de-Santayana (2008). Tardio, J., and M. Pardo-de-Santayana, 2008. Cultural Importance Indices: A Comparative Analysis Based on the Useful Wild Plants of Southern Cantabria (Northern Spain) 1. Economic Botany, 62(1), 24-39. <doi:10.1007/s12231-007-9004-5>.
Author: Cory Whitney
Maintainer: Cory Whitney <whitney.cory@gmail.com>
Diff between ethnobotanyR versions 0.1.2 dated 2019-01-19 and 0.1.3 dated 2019-01-21
DESCRIPTION | 6 - MD5 | 33 +++--- NEWS.md | 4 R/CIs.R | 5 R/NUs.R | 16 +-- R/RFCs.R | 27 ++++- R/RIs.R | 35 +++--- R/URs.R | 4 R/UVs.R | 10 + README.md |only inst/doc/ethnobotanyr_vignette.R | 4 inst/doc/ethnobotanyr_vignette.Rmd | 56 ++++++++-- inst/doc/ethnobotanyr_vignette.html | 186 +++++++++++++++++++++++++++++++----- man/CIs.Rd | 2 man/RFCs.Rd | 2 man/RIs.Rd | 2 man/URs.Rd | 2 vignettes/ethnobotanyr_vignette.Rmd | 56 ++++++++-- 18 files changed, 348 insertions(+), 102 deletions(-)
Title: Misc Functions of the Department of Statistics, Probability
Theory Group (Formerly: E1071), TU Wien
Description: Functions for latent class analysis, short time Fourier
transform, fuzzy clustering, support vector machines,
shortest path computation, bagged clustering, naive Bayes
classifier, ...
Author: David Meyer [aut, cre],
Evgenia Dimitriadou [aut, cph],
Kurt Hornik [aut],
Andreas Weingessel [aut],
Friedrich Leisch [aut],
Chih-Chung Chang [ctb, cph] (libsvm C++-code),
Chih-Chen Lin [ctb, cph] (libsvm C++-code)
Maintainer: David Meyer <David.Meyer@R-project.org>
Diff between e1071 versions 1.7-0 dated 2018-07-28 and 1.7-0.1 dated 2019-01-21
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/svm.h | 5 ++++- 3 files changed, 9 insertions(+), 6 deletions(-)
Title: Data-Driven Sparse PLS Robust to Missing Samples for Mono and
Multi-Block Data Sets
Description: Allows to build Multi-Data-Driven Sparse PLS models. Multi-blocks with
high-dimensional settings are particularly sensible to this.
Author: Hadrien Lorenzo [aut, cre],
Jerome Saracco [aut],
Rodolphe Thiebaut [aut]
Maintainer: Hadrien Lorenzo <hadrien.lorenzo.2015@gmail.com>
Diff between ddsPLS versions 1.0.53 dated 2019-01-08 and 1.0.61 dated 2019-01-21
DESCRIPTION | 10 ++++++---- MD5 | 11 ++++++----- R/perf_mddsPLS.R | 11 ++++++++--- R/plot.perf_mddsPLS.R | 3 +-- build/partial.rdb |binary inst/CITATION |only inst/doc/ddsPLS.html | 6 +++--- 7 files changed, 24 insertions(+), 17 deletions(-)
Title: A Collection of Disease Outbreak Data
Description: Empirical or simulated disease outbreak data, provided either as
RData or as text files.
Author: Thibaut Jombart [aut],
Simon Frost [aut],
Pierre Nouvellet [aut],
Finlay Campbell [aut, cre],
Bertrand Sudre [aut],
Sang Woo Park [ctb],
Juliet R.C. Pulliam [ctb]
Maintainer: Finlay Campbell <f.campbell15@imperial.ac.uk>
Diff between outbreaks versions 1.3.0 dated 2017-05-10 and 1.5.0 dated 2019-01-21
DESCRIPTION | 16 +- MD5 | 82 +++++++------ NAMESPACE | 4 NEWS.md | 143 +++++++++++++----------- R/dengue_fais_2011.R | 84 +++++++------- R/dengue_yap_2011.R | 88 +++++++------- R/ebola_kikwit_1995.R | 80 ++++++------- R/ebola_sim.R | 108 +++++++++--------- R/fluH7N9_china_2013.R | 58 ++++----- R/influenza_england_1978_school.R | 74 ++++++------ R/measles_hagelloch_1861.R | 126 ++++++++++----------- R/mers_korea_2015.R | 136 +++++++++++----------- R/nipah_malaysia.R |only R/norovirus_derbyshire_2001_school.R | 86 +++++++------- R/rabies_car_2003.R |only R/s_enteritidis_pt59.R | 66 +++++------ R/sars_canada_2003.R | 66 +++++------ R/smallpox_abakaliki_1967.R | 74 ++++++------ R/zika_girardot_2015.R | 92 +++++++-------- R/zika_sanandres_2015.R | 92 +++++++-------- R/zika_yap_2007.R | 82 ++++++------- README.md | 190 ++++++++++++++++---------------- data/ebola_sim.RData |binary data/ebola_sim_clean.RData |binary data/nipah_malaysia.RData |only data/rabies_car_2003.RData |only man/dengue_fais_2011.Rd | 94 +++++++-------- man/dengue_yap_2011.Rd | 98 ++++++++-------- man/ebola_kikwit_1995.Rd | 92 +++++++-------- man/ebola_sim.Rd | 110 +++++++++--------- man/fluH7N9_china_2013.Rd | 70 +++++------ man/influenza_england_1978_school.Rd | 86 +++++++------- man/measles_hagelloch_1861.Rd | 138 +++++++++++------------ man/mers_korea_2015.Rd | 140 +++++++++++------------ man/nipah_malaysia.Rd |only man/norovirus_derbyshire_2001_school.Rd | 96 ++++++++-------- man/rabies_car_2003.Rd |only man/s_enteritidis_pt59.Rd | 78 ++++++------- man/sars_canada_2003.Rd | 76 ++++++------ man/smallpox_abakaliki_1967.Rd | 86 +++++++------- man/zika_girardot_2015.Rd | 104 ++++++++--------- man/zika_sanandres_2015.Rd | 104 ++++++++--------- man/zika_yap_2007.Rd | 92 +++++++-------- tests/testthat.R | 8 - tests/testthat/test_RData.R | 38 +++--- 45 files changed, 1648 insertions(+), 1609 deletions(-)
Title: Additional Themes, Theme Components and Utilities for 'ggplot2'
Description: A compilation of extra 'ggplot2' themes, scales and utilities, including a
spell check function for plot label fields and an overall emphasis on typography.
A copy of the 'Google' font 'Roboto Condensed' <https://github.com/google/roboto/>
is also included along with a copy of the 'IBM' 'Plex Sans' <https://github.com/IBM/type>
and 'Titillium Web' <https://fonts.google.com/specimen/Titillium+Web> fonts
are also included to support their respective typography-oriented themes.
Author: Bob Rudis [aut, cre] (<https://orcid.org/0000-0001-5670-2640>),
Patrick Kennedy [ctb],
Philipp Reiner [ctb],
Dan Wilson [ctb] (Secondary axis support),
Xavier Adam [ctb],
Google [cph] (Roboto Condensed & Titillium Web Fonts),
IBM [cph] (Plex Sans Font),
Jacob Barnett [ctb],
Thomas J. Leeper [ctb] (<https://orcid.org/0000-0003-4097-6326>),
Joris Meys [ctb]
Maintainer: Bob Rudis <bob@rud.is>
Diff between hrbrthemes versions 0.5.0.1 dated 2018-08-19 and 0.6.0 dated 2019-01-21
DESCRIPTION | 25 +- MD5 | 47 ++-- NAMESPACE | 9 NEWS.md | 6 R/ft.R |only R/hrbrthemes-package.R | 2 R/modern.r | 34 ++- R/theme-ipsum.r | 382 +++++++++++++++++------------------ R/zzz.r | 2 build/vignette.rds |binary inst/doc/why_hrbrthemes.html | 6 man/ft_cols.Rd |only man/ft_geom_defaults.Rd |only man/ft_pal.Rd |only man/hrbrthemes.Rd | 1 man/ipsum.Rd | 6 man/scale_ft.Rd |only man/scale_ipsum.Rd | 4 man/scale_x_percent.Rd | 16 - man/theme_ipsum.Rd | 9 man/theme_ipsum_ps.Rd | 11 - man/theme_ipsum_rc.Rd | 69 +++--- man/theme_ipsum_tw.Rd | 22 +- tests/figs/deps.txt | 4 tests/figs/themes/theme-ipsum-rc.svg | 88 ++++---- tests/figs/themes/theme-ipsum.svg | 88 ++++---- tests/testthat/test-hrbrthemes.R | 2 27 files changed, 444 insertions(+), 389 deletions(-)
Title: Hierarchical Bayesian Modeling of Decision-Making Tasks
Description: Fit an array of decision-making tasks with computational models in
a hierarchical Bayesian framework. Can perform hierarchical Bayesian analysis of
various computational models with a single line of coding.
Author: Woo-Young Ahn [aut, cre],
Nate Haines [aut],
Lei Zhang [aut],
Harhim Park [ctb],
Jaeyeong Yang [ctb],
Jethro Lee [ctb]
Maintainer: Woo-Young Ahn <wooyoung.ahn@gmail.com>
Diff between hBayesDM versions 0.7.0 dated 2018-12-13 and 0.7.1 dated 2019-01-21
hBayesDM-0.7.0/hBayesDM/inst/stan_files/bandit2arm_delta.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/bandit4arm2_kalman_filter.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/bandit4arm_4par.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/bandit4arm_lapse.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/bart_par4.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/choiceRT_ddm.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/choiceRT_ddm_single.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/choiceRT_lba.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/choiceRT_lba_single.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/cra_exp.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/cra_linear.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/dbdm_prob_weight.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/dd_cs.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/dd_cs_single.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/dd_exp.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/dd_hyperbolic.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/dd_hyperbolic_single.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/gng_m1.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/gng_m2.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/gng_m3.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/gng_m4.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/igt_orl.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/igt_pvl_decay.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/igt_pvl_delta.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/igt_vpp.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/peer_ocu.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/prl_ewa.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/prl_fictitious.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/prl_fictitious_multipleB.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/prl_fictitious_rp.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/prl_fictitious_rp_woa.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/prl_fictitious_woa.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/prl_rp.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/prl_rp_multipleB.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/pst_gainloss_Q.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/ra_noLA.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/ra_noRA.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/ra_prospect.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/rdt_happiness.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/ts_par4.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/ts_par6.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/ts_par7.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/ug_bayes.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/ug_delta.hpp |only hBayesDM-0.7.0/hBayesDM/inst/stan_files/wcs_sql.hpp |only hBayesDM-0.7.1/hBayesDM/DESCRIPTION | 12 +- hBayesDM-0.7.1/hBayesDM/MD5 | 51 ---------- hBayesDM-0.7.1/hBayesDM/NEWS.md | 5 hBayesDM-0.7.1/hBayesDM/R/hBayesDM_model.R | 3 49 files changed, 15 insertions(+), 56 deletions(-)
Title: Water Resources System Simulator
Description: Water resources system simulator is a tool for simulation and analysis of large-scale water resources systems. 'WRSS' proposes functions and methods for construction, simulation and analysis of primary storage and hydropower water resources features (e.g. reservoirs, aquifers, and etc.) based on Standard Operating Policy (SOP).
Author: Rezgar Arabzadeh; Parisa Aberi; Kaveh Panaghi; Shahab Araghinejad; Majid Montaseri
Maintainer: Rezgar Arabzadeh <rezgararabzadeh@ut.ac.ir>
Diff between WRSS versions 2.0 dated 2018-11-05 and 2.1 dated 2019-01-21
DESCRIPTION | 8 - MD5 | 110 ++++++++++----------- NAMESPACE | 1 R/addObjectToArea.R | 4 R/aquiferRouting.R | 20 +-- R/createAquifer.R | 2 R/createAquifer.base.R | 6 - R/createAquifer.default.R | 16 +-- R/createDemandSite.R | 2 R/createDemandSite.base.R | 4 R/createDemandSite.default.R | 19 ++- R/createDiversion.R | 2 R/createDiversion.base.R | 6 - R/createDiversion.default.R | 21 ++-- R/createJunction.R | 2 R/createJunction.base.R | 3 R/createJunction.default.R | 11 +- R/createReservoir.R | 2 R/createReservoir.base.R | 8 - R/createReservoir.default.R | 28 +++-- R/createRiver.R | 2 R/createRiver.base.R | 7 - R/createRiver.default.R | 27 +++-- R/plot.createArea.R | 24 ++-- R/plot.sim.R | 46 ++------ R/riverRouting.R | 7 - R/sim.base.R | 52 +++++----- man/WRSS-package.Rd | 4 man/addObjectToArea.Rd | 208 +++++++++++++++++++--------------------- man/aquiferRouting.Rd | 10 - man/createAquifer.Rd | 7 - man/createAquifer.base.Rd | 7 - man/createAquifer.default.Rd | 7 - man/createDemandSite.Rd | 9 - man/createDemandSite.base.Rd | 9 - man/createDemandSite.default.Rd | 24 ++-- man/createDiversion.Rd | 9 - man/createDiversion.base.Rd | 9 - man/createDiversion.default.Rd | 9 - man/createJunction.Rd | 5 man/createJunction.base.Rd | 5 man/createJunction.default.Rd | 5 man/createReservoir.Rd | 8 - man/createReservoir.base.Rd | 10 - man/createReservoir.default.Rd | 8 - man/createRiver.Rd | 9 - man/createRiver.base.Rd | 9 - man/createRiver.default.Rd | 14 +- man/figures/Fig.pdf |binary man/figures/Fig.png |binary man/figures/Fig1.pdf |binary man/figures/Fig1.png |binary man/figures/Thumbs.db |binary man/reservoirRouting.Rd | 2 man/risk.Rd | 21 +--- man/riverRouting.Rd | 6 - 56 files changed, 429 insertions(+), 425 deletions(-)
Title: Header-Only C++ Mathematical Optimization Library for
'Armadillo'
Description: 'Ensmallen' is a templated C++ mathematical optimization library
(by the 'MLPACK' team) that provides a simple set of abstractions for writing an
objective function to optimize. Provided within are various standard and
cutting-edge optimizers that include full-batch gradient descent techniques,
small-batch techniques, gradient-free optimizers, and constrained optimization.
The 'RcppEnsmallen' package includes the header files from the 'Ensmallen' library
and pairs the appropriate header files from 'armadillo' through the
'RcppArmadillo' package. Therefore, users do not need to install 'Ensmallen' nor
'Armadillo' to use 'RcppEnsmallen'. Note that 'Ensmallen' is licensed under
3-Clause BSD, 'Armadillo' starting from 7.800.0 is licensed under Apache License 2,
'RcppArmadillo' (the 'Rcpp' bindings/bridge to 'Armadillo') is licensed under
the GNU GPL version 2 or later. Thus, 'RcppEnsmallen' is also licensed under
similar terms. Note that 'Ensmallen' requires a compiler that supports
'C++11' and 'Armadillo' 6.500 or later.
Author: James Joseph Balamuta [aut, cre, cph]
(<https://orcid.org/0000-0003-2826-8458>),
Dirk Eddelbuettel [aut, cph] (<https://orcid.org/0000-0001-6419-907X>)
Maintainer: James Joseph Balamuta <balamut2@illinois.edu>
Diff between RcppEnsmallen versions 0.1.12.0.1 dated 2019-01-04 and 0.1.13.0.1 dated 2019-01-21
ChangeLog | 9 + DESCRIPTION | 6 - MD5 | 18 +-- NEWS.md | 9 + inst/include/ensmallen.hpp | 1 inst/include/ensmallen_bits/aug_lagrangian/aug_lagrangian.hpp | 56 ++++++---- inst/include/ensmallen_bits/aug_lagrangian/aug_lagrangian_impl.hpp | 41 +++---- inst/include/ensmallen_bits/ens_version.hpp | 4 inst/include/ensmallen_bits/sdp/lrsdp_impl.hpp | 3 inst/include/ensmallen_bits/spsa |only 10 files changed, 94 insertions(+), 53 deletions(-)
Title: Support for Parallel Computation, Logging, and Function
Automation
Description: Support for parallel computation with progress bar, and option to stop or proceed on errors. Also provides logging to console and disk,
and the logging persists in the parallel threads. Additional functions support function call automation with delayed execution (e.g. for executing functions in
parallel).
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut],
Observational Health Data Science and Informatics [cph]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between ParallelLogger versions 1.0.1 dated 2018-10-25 and 1.1.0 dated 2019-01-21
ParallelLogger-1.0.1/ParallelLogger/NEWS |only ParallelLogger-1.1.0/ParallelLogger/DESCRIPTION | 26 - ParallelLogger-1.1.0/ParallelLogger/MD5 | 58 +- ParallelLogger-1.1.0/ParallelLogger/NAMESPACE | 5 ParallelLogger-1.1.0/ParallelLogger/NEWS.md |only ParallelLogger-1.1.0/ParallelLogger/R/Appenders.R |only ParallelLogger-1.1.0/ParallelLogger/R/Args.R | 46 + ParallelLogger-1.1.0/ParallelLogger/R/Cluster.R | 2 ParallelLogger-1.1.0/ParallelLogger/R/Layouts.R |only ParallelLogger-1.1.0/ParallelLogger/R/Loggers.R |only ParallelLogger-1.1.0/ParallelLogger/R/Logging.R | 244 ---------- ParallelLogger-1.1.0/ParallelLogger/R/ParallelLogger.R | 2 ParallelLogger-1.1.0/ParallelLogger/R/ShinyApps.R | 2 ParallelLogger-1.1.0/ParallelLogger/README.md | 39 - ParallelLogger-1.1.0/ParallelLogger/inst/doc/Logging.R | 28 + ParallelLogger-1.1.0/ParallelLogger/inst/doc/Logging.Rmd | 47 + ParallelLogger-1.1.0/ParallelLogger/inst/doc/Logging.pdf |binary ParallelLogger-1.1.0/ParallelLogger/inst/doc/Parallel.pdf |binary ParallelLogger-1.1.0/ParallelLogger/man/addDefaultConsoleLogger.Rd | 2 ParallelLogger-1.1.0/ParallelLogger/man/addDefaultEmailLogger.Rd |only ParallelLogger-1.1.0/ParallelLogger/man/addDefaultFileLogger.Rd | 2 ParallelLogger-1.1.0/ParallelLogger/man/convertJsonToSettings.Rd |only ParallelLogger-1.1.0/ParallelLogger/man/convertSettingsToJson.Rd |only ParallelLogger-1.1.0/ParallelLogger/man/createConsoleAppender.Rd | 2 ParallelLogger-1.1.0/ParallelLogger/man/createEmailAppender.Rd |only ParallelLogger-1.1.0/ParallelLogger/man/createFileAppender.Rd | 2 ParallelLogger-1.1.0/ParallelLogger/man/createLogger.Rd | 2 ParallelLogger-1.1.0/ParallelLogger/man/layoutEmail.Rd |only ParallelLogger-1.1.0/ParallelLogger/man/layoutParallel.Rd | 2 ParallelLogger-1.1.0/ParallelLogger/man/layoutSimple.Rd | 2 ParallelLogger-1.1.0/ParallelLogger/man/layoutStackTrace.Rd | 2 ParallelLogger-1.1.0/ParallelLogger/man/layoutTimestamp.Rd | 2 ParallelLogger-1.1.0/ParallelLogger/tests/testthat/test-logging.R | 2 ParallelLogger-1.1.0/ParallelLogger/tests/testthat/test-saveAndLoadJson.R | 12 ParallelLogger-1.1.0/ParallelLogger/vignettes/Logging.Rmd | 47 + 35 files changed, 259 insertions(+), 319 deletions(-)
More information about ParallelLogger at CRAN
Permanent link
Title: Creation and Evaluation of Acceptance Sampling Plans
Description: Provides functionality for creating and
evaluating acceptance sampling plans. Sampling plans can be single,
double or multiple.
Author: Andreas Kiermeier [aut, cre],
Peter Bloomfield [ctb]
Maintainer: Andreas Kiermeier <Andreas.Kiermeier@gmail.com>
Diff between AcceptanceSampling versions 1.0-5 dated 2016-12-29 and 1.0-6 dated 2019-01-21
AcceptanceSampling-1.0-5/AcceptanceSampling/inst/doc/Thumbs.db |only AcceptanceSampling-1.0-5/AcceptanceSampling/vignettes/Thumbs.db |only AcceptanceSampling-1.0-6/AcceptanceSampling/DESCRIPTION | 8 AcceptanceSampling-1.0-6/AcceptanceSampling/MD5 | 20 AcceptanceSampling-1.0-6/AcceptanceSampling/R/code_twoclass.R | 27 AcceptanceSampling-1.0-6/AcceptanceSampling/R/code_var.R | 24 AcceptanceSampling-1.0-6/AcceptanceSampling/build/vignette.rds |binary AcceptanceSampling-1.0-6/AcceptanceSampling/inst/doc/acceptance_sampling_manual.Rnw | 1874 ++-- AcceptanceSampling-1.0-6/AcceptanceSampling/inst/doc/acceptance_sampling_manual.pdf |binary AcceptanceSampling-1.0-6/AcceptanceSampling/vignettes/acceptance_sampling_manual.Rnw | 1874 ++-- AcceptanceSampling-1.0-6/AcceptanceSampling/vignettes/class_structure_2c.pdf | 3970 +++++----- AcceptanceSampling-1.0-6/AcceptanceSampling/vignettes/class_structure_var.pdf | 1982 ++-- 12 files changed, 4891 insertions(+), 4888 deletions(-)
More information about AcceptanceSampling at CRAN
Permanent link
Title: Sparse Tensors in R
Description: Provides methods to manipulate and store sparse tensors. Tensors
are multidimensional generalizations of matrices (two dimensional) and
vectors (one dimensional).
Author: Robert Zamora [aut, cre]
Maintainer: Robert Zamora <zamora.rr@gmail.com>
Diff between tensorr versions 0.1.0 dated 2017-04-01 and 0.1.1 dated 2019-01-21
DESCRIPTION | 10 +-- MD5 | 84 +++++++++++++------------- NAMESPACE | 2 NEWS.md | 6 + R/aaa-package.r | 4 - R/all-classes.r | 2 R/all-generics.r | 4 - R/asserts.r | 1 R/dtensor-convert.r | 6 + R/dtensor-extract.r | 2 R/dtensor.r | 54 ++++++++++++++++ R/sptensor-convert.r | 9 ++ R/sptensor-extract-dimnames.r |only R/sptensor-extract.r | 68 ++++++++------------- R/sptensor-replace-dimnames.r |only R/sptensor-replace.r | 17 +++-- R/sptensor.r | 49 ++++++++++++++- R/tensor.r | 7 ++ R/utils.r | 69 +++++++++++++++------ README.md | 4 - build/vignette.rds |binary inst/doc/introduction.R | 7 ++ inst/doc/introduction.Rmd | 13 +++- inst/doc/introduction.html | 61 ++++++++++++------ man/all_are_numeric.Rd | 3 man/as_sptensor.Rd | 2 man/build_indices.Rd | 4 - man/dimnames.Rd |only man/dimnames_to_indices.Rd |only man/extract_sptensor.Rd | 6 - man/fill_missing_indices.Rd |only man/list_to_matidx.Rd | 4 - man/sptensor-extract.Rd | 21 ++++-- man/sptensor-replace.Rd | 20 ++++-- man/tensorr.Rd | 4 - man/ttv.Rd | 1 man/unfolded_dtensor.Rd | 2 man/unfolded_sptensor.Rd | 5 - tests/testthat/test-dense-extract.r | 4 + tests/testthat/test-dense.r | 16 ++++ tests/testthat/test-sparse-extract-dimnames.r |only tests/testthat/test-sparse-extract.r | 25 +++++++ tests/testthat/test-sparse-replace.r | 63 +++++++++++++++++++ tests/testthat/test-sparse.r | 30 +++++++++ tests/testthat/test-utils.r | 13 ++++ vignettes/introduction.Rmd | 13 +++- 46 files changed, 543 insertions(+), 172 deletions(-)
Title: Grouped Statistical Analyses in a Tidy Way
Description: Collection of functions to run statistical tests across all levels
of multiple grouping variables.
Author: Indrajeet Patil [aut, cre] (<https://orcid.org/0000-0003-1995-6531>)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between groupedstats versions 0.0.4 dated 2018-12-01 and 0.0.5 dated 2019-01-21
DESCRIPTION | 18 +- MD5 | 48 +++--- NAMESPACE | 2 NEWS.md | 5 R/data.R | 4 R/grouped_aov.R | 4 R/grouped_glm.R | 1 R/grouped_glmer.R | 1 R/grouped_lm.R | 1 R/grouped_lmer.R | 1 R/grouped_proptest.R | 50 +++--- R/grouped_robustslr.R | 19 +- R/grouped_summary.R | 69 +++++--- R/grouped_ttest.R | 4 R/grouped_wilcox.R | 4 R/lm_effsize_ci.R | 184 ++++++++++++----------- README.md | 240 +++++++++++++++--------------- inst/WORDLIST | 29 +++ man/Titanic_full.Rd | 1 man/figures/README-grouped_summary3-1.png |binary man/intent_morality.Rd | 1 man/lm_effsize_ci.Rd | 12 + man/movies_long.Rd | 1 man/movies_wide.Rd | 1 tests/spelling.R | 5 25 files changed, 406 insertions(+), 299 deletions(-)
Title: Elo Ratings
Description: A flexible framework for calculating Elo ratings and resulting
rankings of any two-team-per-matchup system (chess, sports leagues, 'Go',
etc.). This implementation is capable of evaluating a variety of matchups,
Elo rating updates, and win probabilities, all based on the basic Elo
rating system.
Author: Ethan Heinzen [aut, cre]
Maintainer: Ethan Heinzen <heinzen.ethan@mayo.edu>
Diff between elo versions 1.0.1 dated 2017-12-14 and 1.1.0 dated 2019-01-21
DESCRIPTION | 13 +-- MD5 | 74 +++++++++-------- NAMESPACE | 15 +++ NEWS.md | 16 +++ R/RcppExports.R | 4 R/auc.elo.run.R | 2 R/elo.R | 2 R/elo.calc.R | 3 R/elo.glm.R |only R/elo.model.frame.R | 93 ++------------------- R/elo.players.R |only R/elo.prob.R | 18 ++-- R/elo.run.R | 24 ++--- R/elo.run.helpers.R | 7 - R/elo.update.R | 2 R/formula.specials.R |only R/internal.functions.R | 85 ++++++++++---------- R/predict.elo.run.R | 15 --- R/summary.elo.run.R | 10 +- build/vignette.rds |binary inst/doc/elo.Rmd | 6 - inst/doc/elo.html | 11 +- man/elo.calc.Rd | 6 - man/elo.glm.Rd |only man/elo.model.frame.Rd | 30 ------- man/elo.prob.Rd | 10 +- man/elo.run.Rd | 11 +- man/elo.update.Rd | 6 - man/formula.specials.Rd |only man/predict.elo.run.Rd | 4 man/score.Rd | 1 man/summary.elo.run.Rd | 5 - src/RcppExports.cpp | 16 ++- src/asMatrix.cpp | 20 +++- src/elo.cpp | 119 +++++++++++++++++----------- src/finalElos.cpp | 16 +-- tests/testthat/helper-data.R | 12 ++ tests/testthat/test_elo.run.R | 8 - tests/testthat/test_elo.run_regress_group.R | 66 +++++++++------ tests/testthat/test_elo.team.R |only vignettes/elo.Rmd | 6 - 41 files changed, 365 insertions(+), 371 deletions(-)