Title: R Version of GENetic Optimization Using Derivatives
Description: A genetic algorithm plus derivative optimizer.
Author: Walter R. Mebane, Jr. <wmebane@umich.edu>,
Jasjeet Singh Sekhon <sekhon@berkeley.edu>
Maintainer: Jasjeet Singh Sekhon <sekhon@berkeley.edu>
Diff between rgenoud versions 5.8-2.0 dated 2018-05-06 and 5.8-3.0 dated 2019-01-24
DESCRIPTION | 8 +- MD5 | 12 +-- build/vignette.rds |binary inst/doc/rgenoud.pdf |binary tests/tests.R | 41 ------------- tests/tests.Rout.save | 91 +---------------------------- tests/testthat/test-genoud_no_given_seed.R | 75 ++++++++++++----------- 7 files changed, 52 insertions(+), 175 deletions(-)
Title: Semiparametric Competing Risks Regression under Interval
Censoring
Description: Semiparametric regression models on the cumulative incidence function with interval-censored competing risks data as described in Bakoyannis, Yu, & Yiannoutsos (2017) <doi:10.1002/sim.7350>. The main function fits the proportional subdistribution hazards model (Fine-Gray model), the proportional odds model, and other models that belong to the class of semiparametric generalized odds rate transformation models.
Author: Giorgos Bakoyannis <gbakogia@iu.edu>, Jun Park <jp84@iu.edu>
Maintainer: Jun Park <jp84@iu.edu>
Diff between intccr versions 1.0.5 dated 2019-01-16 and 1.1.0 dated 2019-01-24
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- NAMESPACE | 1 + R/bssmle.R | 7 ++++--- R/bssmle_se.R | 15 ++++++++------- R/ciregic.R | 11 +++++++---- R/dataprep.R | 24 +++++++++++++++++------- R/naive_b.R | 5 +++-- man/bssmle.Rd | 4 +++- man/bssmle_se.Rd | 4 +++- man/ciregic.Rd | 4 +++- man/naive_b.Rd | 4 +++- 12 files changed, 67 insertions(+), 42 deletions(-)
Title: An Interface to Google Drive
Description: Manage Google Drive files from R.
Author: Lucy D'Agostino McGowan [aut],
Jennifer Bryan [aut, cre] (<https://orcid.org/0000-0002-6983-2759>),
RStudio [cph, fnd]
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between googledrive versions 0.1.2 dated 2018-10-06 and 0.1.3 dated 2019-01-24
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/generate_request.R | 2 +- build/vignette.rds |binary man/drive_auth.Rd | 2 +- 6 files changed, 15 insertions(+), 11 deletions(-)
Title: Functional Data Analysis with Linear Differential Equations
Description: Provides methods for using differential equations as modelling
objects as described in J. Ramsay G. and Hooker (2017,ISBN 978-1-4939-7188-6)
Dynamic Data Analysis, New York: Springer. Data sets and script files for
analyzing many of the examples in this book are included. This version
corrects bugs and adds a new demo, CruiseControl. 'Matlab' versions of the
code and sample analyses are available by ftp from
<http://www.psych.mcgill.ca/misc/fda/downloads/Data2LD/>. There you find
a set of .zip files containing the functions and sample analyses, as well
as two .txt files giving instructions for installation and some additional
information.
Author: James Ramsay [aut, cre]
Maintainer: James Ramsay <James.Ramsay@mcgill.ca>
Diff between Data2LD versions 1.1.0 dated 2018-07-04 and 2.0.0 dated 2019-01-24
Data2LD-1.1.0/Data2LD/R/BAwtlist2vec.R |only Data2LD-1.1.0/Data2LD/R/BAwtvec2list.R |only Data2LD-1.1.0/Data2LD/R/make.coef.R |only Data2LD-1.1.0/Data2LD/R/make.variable.R |only Data2LD-1.1.0/Data2LD/R/modelCheck.R |only Data2LD-1.1.0/Data2LD/demo/FDAScript.R |only Data2LD-1.1.0/Data2LD/inst/doc/README.Rmd |only Data2LD-1.1.0/Data2LD/man/make.coef.Rd |only Data2LD-1.1.0/Data2LD/man/make.variable.Rd |only Data2LD-1.1.0/Data2LD/man/modelCheck.Rd |only Data2LD-1.1.0/Data2LD/src/DASarrayFnC.cpp |only Data2LD-1.1.0/Data2LD/src/DASarrayFnC.h |only Data2LD-1.1.0/Data2LD/src/DBSarrayFnC.cpp |only Data2LD-1.1.0/Data2LD/src/DBSarrayFnC.h |only Data2LD-1.1.0/Data2LD/src/DRarrayFnC.cpp |only Data2LD-1.1.0/Data2LD/src/DRarrayFnC.h |only Data2LD-1.1.0/Data2LD/src/RmatFnC.cpp |only Data2LD-1.1.0/Data2LD/src/RmatFnC.h |only Data2LD-1.1.0/Data2LD/src/SmatFnC.cpp |only Data2LD-1.1.0/Data2LD/src/SmatFnC.h |only Data2LD-1.1.0/Data2LD/src/loopJuanC.cpp |only Data2LD-1.1.0/Data2LD/src/loopJuanC.h |only Data2LD-2.0.0/Data2LD/DESCRIPTION | 25 Data2LD-2.0.0/Data2LD/MD5 | 98 +- Data2LD-2.0.0/Data2LD/NAMESPACE | 11 Data2LD-2.0.0/Data2LD/R/Atensorfn.R | 4 Data2LD-2.0.0/Data2LD/R/BAtensorfn.R | 20 Data2LD-2.0.0/Data2LD/R/Btensorfn.R | 22 Data2LD-2.0.0/Data2LD/R/Data2LD.R | 1360 ++++++++++++++-------------- Data2LD-2.0.0/Data2LD/R/Data2LD.opt.R | 93 + Data2LD-2.0.0/Data2LD/R/coefCheck.R | 75 - Data2LD-2.0.0/Data2LD/R/getForceTerm.R |only Data2LD-2.0.0/Data2LD/R/getHomoTerm.R |only Data2LD-2.0.0/Data2LD/R/inprod.TPbasis.R | 5 Data2LD-2.0.0/Data2LD/R/inprodnow.R |only Data2LD-2.0.0/Data2LD/R/make.Coef.R |only Data2LD-2.0.0/Data2LD/R/make.Model.R |only Data2LD-2.0.0/Data2LD/R/make.Variable.R |only Data2LD-2.0.0/Data2LD/R/make.Xterm.R | 6 Data2LD-2.0.0/Data2LD/R/modelList2Vec.R | 40 Data2LD-2.0.0/Data2LD/R/modelVec2List.R | 5 Data2LD-2.0.0/Data2LD/build |only Data2LD-2.0.0/Data2LD/demo/00Index | 9 Data2LD-2.0.0/Data2LD/demo/AverageTemp.R | 114 +- Data2LD-2.0.0/Data2LD/demo/CruiseControl.R |only Data2LD-2.0.0/Data2LD/demo/HeadImpact.R | 226 +--- Data2LD-2.0.0/Data2LD/demo/Refinery.R | 95 + Data2LD-2.0.0/Data2LD/demo/fdascript.R |only Data2LD-2.0.0/Data2LD/inst/doc/Data2LD.R |only Data2LD-2.0.0/Data2LD/inst/doc/Data2LD.Rmd |only Data2LD-2.0.0/Data2LD/inst/doc/Data2LD.html |only Data2LD-2.0.0/Data2LD/man/Data2LD.Rd | 70 - Data2LD-2.0.0/Data2LD/man/Data2LD.opt.Rd | 87 - Data2LD-2.0.0/Data2LD/man/coefCheck.Rd | 6 Data2LD-2.0.0/Data2LD/man/fdascript.Rd | 4 Data2LD-2.0.0/Data2LD/man/getForceTerm.Rd |only Data2LD-2.0.0/Data2LD/man/getHomoTerm.Rd |only Data2LD-2.0.0/Data2LD/man/make.Coef.Rd |only Data2LD-2.0.0/Data2LD/man/make.Fterm.Rd | 6 Data2LD-2.0.0/Data2LD/man/make.Model.Rd |only Data2LD-2.0.0/Data2LD/man/make.Variable.Rd |only Data2LD-2.0.0/Data2LD/man/make.Xterm.Rd | 6 Data2LD-2.0.0/Data2LD/src/DASarrayFnCpp.cpp |only Data2LD-2.0.0/Data2LD/src/DASarrayFnCpp.h |only Data2LD-2.0.0/Data2LD/src/DBSarrayFnCpp.cpp |only Data2LD-2.0.0/Data2LD/src/DBSarrayFnCpp.h |only Data2LD-2.0.0/Data2LD/src/DRarrayFnCpp.cpp |only Data2LD-2.0.0/Data2LD/src/DRarrayFnCpp.h |only Data2LD-2.0.0/Data2LD/src/RmatFnCpp.cpp |only Data2LD-2.0.0/Data2LD/src/RmatFnCpp.h |only Data2LD-2.0.0/Data2LD/src/SmatFnCpp.cpp |only Data2LD-2.0.0/Data2LD/src/SmatFnCpp.h |only Data2LD-2.0.0/Data2LD/src/init.c | 24 Data2LD-2.0.0/Data2LD/src/loopJuanCpp.cpp |only Data2LD-2.0.0/Data2LD/src/loopJuanCpp.h |only Data2LD-2.0.0/Data2LD/vignettes |only 76 files changed, 1216 insertions(+), 1195 deletions(-)
Title: Heterogeneous Autoregressive Models
Description: Estimation, simulation, and forecasting using the HAR model from Corsi(2009) <DOI:10.1093/jjfinec/nbp001> and extensions.
Author: Emil Sjoerup
Maintainer: Emil Sjoerup <emilsjoerup@live.dk>
Diff between HARModel versions 0.1 dated 2018-10-12 and 0.2 dated 2019-01-24
HARModel-0.1/HARModel/data/DJIRealizedMeasures.rda |only HARModel-0.1/HARModel/man/DJIRealizedMeasures.Rd |only HARModel-0.1/HARModel/man/HARDataCreationC.Rd |only HARModel-0.1/HARModel/man/HARMonteCarlo.Rd |only HARModel-0.1/HARModel/man/SandwichNeweyWest.Rd |only HARModel-0.1/HARModel/man/uncondmean.Rd |only HARModel-0.2/HARModel/ChangeLog |only HARModel-0.2/HARModel/DESCRIPTION | 12 HARModel-0.2/HARModel/MD5 | 47 - HARModel-0.2/HARModel/NAMESPACE | 8 HARModel-0.2/HARModel/R/ClassMethods.R | 215 +++----- HARModel-0.2/HARModel/R/HARForecast.R | 524 ++++++++++++++++++--- HARModel-0.2/HARModel/R/HARSimulate.R | 46 - HARModel-0.2/HARModel/R/HARestimate.R | 387 ++++++++++++++- HARModel-0.2/HARModel/R/RcppExports.R | 12 HARModel-0.2/HARModel/build/partial.rdb |binary HARModel-0.2/HARModel/data/DJIRM.RData |only HARModel-0.2/HARModel/data/SP500RM.RData |only HARModel-0.2/HARModel/man/DJIRM.Rd |only HARModel-0.2/HARModel/man/HARForecast-class.Rd | 23 HARModel-0.2/HARModel/man/HARModel-class.Rd | 20 HARModel-0.2/HARModel/man/HARSim-class.Rd | 12 HARModel-0.2/HARModel/man/HARestimate.Rd | 96 ++- HARModel-0.2/HARModel/man/HARforecast.Rd | 105 +++- HARModel-0.2/HARModel/man/HARsimulate.Rd | 23 HARModel-0.2/HARModel/man/SP500RM.Rd |only HARModel-0.2/HARModel/src/HARDataCreationC.cpp | 41 - HARModel-0.2/HARModel/src/HARDataCreationC.h | 3 HARModel-0.2/HARModel/src/HARSimC.cpp |only HARModel-0.2/HARModel/src/RcppExports.cpp | 39 + HARModel-0.2/HARModel/src/fastlmcoef.cpp |only 31 files changed, 1229 insertions(+), 384 deletions(-)
Title: 'nloptr' Plug-in for the 'R' Optimization Infrastructure
Description: Enhances the R Optimization Infrastructure ('ROI') package
with the 'NLopt' solver for solving nonlinear optimization problems.
Author: Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between ROI.plugin.nloptr versions 0.3-1 dated 2018-10-01 and 0.3-3 dated 2019-01-24
DESCRIPTION | 8 MD5 | 12 R/solve.R | 769 +++++++++++++++++++++++++++++++++++++++++------- R/status_codes.R | 3 R/zzz.R | 232 +++++++++++++- man/Example_01.Rd | 9 tests/test_nloptr.R | 820 +++++++++------------------------------------------- 7 files changed, 1015 insertions(+), 838 deletions(-)
More information about ROI.plugin.nloptr at CRAN
Permanent link
Title: Interface Between R and the OpenStreetMap-Based Routing Service
OSRM
Description: An interface between R and the OSRM API. OSRM is a routing
service based on OpenStreetMap data. See <http://project-osrm.org/> for more
information. This package allows to compute distances (travel time and
kilometric distance) between points and travel time matrices.
Author: Timothée Giraud [cre, aut],
Robin Cura [ctb],
Matthieu Viry [ctb]
Maintainer: Timothée Giraud <timothee.giraud@cnrs.fr>
Diff between osrm versions 3.1.1 dated 2018-03-12 and 3.2.0 dated 2019-01-24
DESCRIPTION | 9 +-- MD5 | 29 ++++++------ NEWS | 10 ++++ R/osrmIsochrone.R | 9 ++- R/osrmRoute.R | 60 +++++++++++++++++-------- R/osrmTable.R | 74 ++++++++++++++++++++++++------- R/osrmTrip.R | 30 ++++++++++-- R/package.R | 5 +- R/utils.R | 15 +++++- README.md | 119 +++++++++++++++++++++++++-------------------------- inst/test.r |only man/osrm.Rd | 5 +- man/osrmIsochrone.Rd | 4 + man/osrmRoute.Rd | 46 ++++++++++++------- man/osrmTable.Rd | 9 +++ man/osrmTrip.Rd | 15 ++++++ 16 files changed, 288 insertions(+), 151 deletions(-)
Title: Graph Plotting Methods, Psychometric Data Visualization and
Graphical Model Estimation
Description: Weighted network visualization and analysis, as well as Gaussian graphical model computation. See Epskamp et al. (2012) <doi:10.18637/jss.v048.i04>.
Author: Sacha Epskamp [aut, cre],
Giulio Costantini [aut],
Jonas Haslbeck [aut],
Angelique O. J. Cramer [ctb],
Lourens J. Waldorp [ctb],
Verena D. Schmittmann [ctb],
Denny Borsboom [ctb]
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between qgraph versions 1.5 dated 2018-04-25 and 1.6 dated 2019-01-24
qgraph-1.5/qgraph/R/Untitled.R |only qgraph-1.5/qgraph/R/qgraph.lavaan.R |only qgraph-1.5/qgraph/R/qgraph.panel.R |only qgraph-1.5/qgraph/R/qgraphBoot.R |only qgraph-1.5/qgraph/R/qgraph_Efa.R |only qgraph-1.5/qgraph/R/qgraph_cfa.R |only qgraph-1.5/qgraph/R/qgraph_pca.R |only qgraph-1.5/qgraph/R/qgraph_sem.R |only qgraph-1.5/qgraph/R/qgraph_semModel.R |only qgraph-1.5/qgraph/R/qgraph_svg.R |only qgraph-1.5/qgraph/man/qgraph.cfa.Rd |only qgraph-1.5/qgraph/man/qgraph.gui.Rd |only qgraph-1.5/qgraph/man/qgraph.lavaan.Rd |only qgraph-1.5/qgraph/man/qgraph.panel.Rd |only qgraph-1.5/qgraph/man/qgraph.semModel.Rd |only qgraph-1.5/qgraph/man/qgraph_efa.Rd |only qgraph-1.5/qgraph/man/qgraph_pca.Rd |only qgraph-1.5/qgraph/man/qgraph_sem.Rd |only qgraph-1.5/qgraph/man/qgraph_svg.Rd |only qgraph-1.5/qgraph/src/layout.c |only qgraph-1.5/qgraph/src/registration.c |only qgraph-1.6/qgraph/DESCRIPTION | 34 - qgraph-1.6/qgraph/MD5 | 76 -- qgraph-1.6/qgraph/NAMESPACE | 35 - qgraph-1.6/qgraph/NEWS | 37 + qgraph-1.6/qgraph/R/PLOT.R | 415 ++++++------- qgraph-1.6/qgraph/R/RcppExports.R |only qgraph-1.6/qgraph/R/centrality.R | 11 qgraph-1.6/qgraph/R/centralityFunctions.R | 8 qgraph-1.6/qgraph/R/centralityPlot.R | 7 qgraph-1.6/qgraph/R/centralityTable.R | 6 qgraph-1.6/qgraph/R/clusteringTable.R | 5 qgraph-1.6/qgraph/R/flow.R | 246 +++---- qgraph-1.6/qgraph/R/ggmFit.R | 78 +- qgraph-1.6/qgraph/R/ggmModSelect.R | 20 qgraph-1.6/qgraph/R/glasso_methods.R | 4 qgraph-1.6/qgraph/R/layout.R | 102 ++- qgraph-1.6/qgraph/R/palettes.R | 17 qgraph-1.6/qgraph/R/qgraph.R | 103 ++- qgraph-1.6/qgraph/R/qgraph_loadings.R | 5 qgraph-1.6/qgraph/R/scale2.R | 1 qgraph-1.6/qgraph/R/vein.R | 6 qgraph-1.6/qgraph/man/CentAndClusfuns.Rd | 8 qgraph-1.6/qgraph/man/centrality.Rd | 14 qgraph-1.6/qgraph/man/ggmModSelect.Rd | 6 qgraph-1.6/qgraph/man/qgraph.Rd | 29 qgraph-1.6/qgraph/man/qgraph.layout.fruchtermanreingold.Rd | 4 qgraph-1.6/qgraph/man/qgraph_loadings.Rd | 2 qgraph-1.6/qgraph/src/Makevars |only qgraph-1.6/qgraph/src/Makevars.win |only qgraph-1.6/qgraph/src/RcppExports.cpp |only qgraph-1.6/qgraph/src/layout_rcpp.cpp |only 52 files changed, 726 insertions(+), 553 deletions(-)
Title: Cluster-Robust (Sandwich) Variance Estimators with Small-Sample
Corrections
Description: Provides several cluster-robust variance estimators (i.e.,
sandwich estimators) for ordinary and weighted least squares linear regression
models, including the bias-reduced linearization estimator introduced by Bell
and McCaffrey (2002)
<http://www.statcan.gc.ca/pub/12-001-x/2002002/article/9058-eng.pdf> and
developed further by Pustejovsky and Tipton (2017)
<DOI:10.1080/07350015.2016.1247004>. The package includes functions for estimating
the variance- covariance matrix and for testing single- and multiple-
contrast hypotheses based on Wald test statistics. Tests of single regression
coefficients use Satterthwaite or saddle-point corrections. Tests of multiple-
contrast hypotheses use an approximation to Hotelling's T-squared distribution.
Methods are provided for a variety of fitted models, including lm() and mlm
objects, glm(), ivreg (from package 'AER'), plm() (from package 'plm'), gls()
and lme() (from 'nlme'), robu() (from 'robumeta'), and rma.uni() and rma.mv()
(from 'metafor').
Author: James Pustejovsky [aut, cre]
Maintainer: James Pustejovsky <jepusto@gmail.com>
Diff between clubSandwich versions 0.3.2 dated 2018-05-21 and 0.3.3 dated 2019-01-24
DESCRIPTION | 10 MD5 | 35 - NEWS | 5 R/rma-mv.R | 2 R/rma-uni.R | 11 build/partial.rdb |binary build/vignette.rds |binary inst/doc/Robust-Variance-Estimation-with-clubSandwich.html | 188 ------ inst/doc/meta-analysis-with-CRVE.html | 370 ++--------- inst/doc/panel-data-CRVE.html | 402 +++---------- man/conf_int.Rd | 4 man/vcovCR.glm.Rd | 4 man/vcovCR.lm.Rd | 4 tests/testthat/test_gls.R | 6 tests/testthat/test_impute_covariance_matrix.R |only tests/testthat/test_lme_3level.R | 5 tests/testthat/test_mlm.R | 2 tests/testthat/test_rma-mv.R | 98 ++- tests/testthat/test_rma-uni.R | 28 19 files changed, 350 insertions(+), 824 deletions(-)
Title: A Fast Implementation of Random Forests
Description: A fast implementation of Random Forests, particularly suited for high
dimensional data. Ensembles of classification, regression, survival and
probability prediction trees are supported. Data from genome-wide association
studies can be analyzed efficiently. In addition to data frames, datasets of
class 'gwaa.data' (R package 'GenABEL') and 'dgCMatrix' (R package 'Matrix')
can be directly analyzed.
Author: Marvin N. Wright [aut, cre], Stefan Wager [ctb], Philipp Probst [ctb]
Maintainer: Marvin N. Wright <cran@wrig.de>
Diff between ranger versions 0.11.0 dated 2019-01-21 and 0.11.1 dated 2019-01-24
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 3 +++ src/Data.cpp | 2 +- tests/testthat/test_jackknife.R | 1 + tests/testthat/test_sparse.R | 1 + 6 files changed, 15 insertions(+), 10 deletions(-)
Title: Multi-Level Vector Autoregression
Description: Estimates the multi-level vector autoregression model on time-series data.
Three network structures are obtained: temporal networks, contemporaneous
networks and between-subjects networks.
Author: Sacha Epskamp, Marie K. Deserno and Laura F. Bringmann
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between mlVAR versions 0.4.1 dated 2018-08-26 and 0.4.2 dated 2019-01-24
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 3 +++ R/lmer_murmur.R | 2 +- R/mlVAR.R | 2 +- 5 files changed, 12 insertions(+), 9 deletions(-)
Title: Land Use Change Modelling in R
Description: Classes and methods for spatially explicit land use change
modelling in R.
Author: Simon Moulds <sim.moulds@gmail.com>
Maintainer: Simon Moulds <sim.moulds@gmail.com>
Diff between lulcc versions 1.0.2 dated 2017-03-27 and 1.0.3 dated 2019-01-24
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/crossTabulate.R | 19 +++++++++++++++---- src/updatehist.c | 23 +++++++++++++++-------- 4 files changed, 36 insertions(+), 18 deletions(-)
Title: Tools for Eurostat Open Data
Description: Tools to download data from the Eurostat database
<http://ec.europa.eu/eurostat> together with search and
manipulation utilities.
Author: Leo Lahti [aut, cre],
Janne Huovari [aut],
Markus Kainu [aut],
Przemyslaw Biecek [aut],
Joona Lehtomaki [ctb],
Francois Briatte [ctb],
Oliver Reiter [ctb]
Maintainer: ORPHANED
Diff between eurostat versions 3.3.1.1 dated 2019-01-23 and 3.3.1.2 dated 2019-01-24
eurostat-3.3.1.1/eurostat/inst/doc/eurostat_tutorial.pdf |only eurostat-3.3.1.2/eurostat/DESCRIPTION | 6 +- eurostat-3.3.1.2/eurostat/MD5 | 17 +++---- eurostat-3.3.1.2/eurostat/inst/doc/blogposts.html | 4 - eurostat-3.3.1.2/eurostat/inst/doc/cheatsheet.html | 4 - eurostat-3.3.1.2/eurostat/inst/doc/eurostat_tutorial.Rmd | 6 +- eurostat-3.3.1.2/eurostat/inst/doc/eurostat_tutorial.html | 30 +++++++------- eurostat-3.3.1.2/eurostat/inst/doc/publications.html | 4 - eurostat-3.3.1.2/eurostat/vignettes/eurostat_tutorial.Rmd | 6 +- eurostat-3.3.1.2/eurostat/vignettes/eurostat_tutorial.md | 6 +- 10 files changed, 41 insertions(+), 42 deletions(-)
Title: Bootstrap Methods for Various Network Estimation Routines
Description: Bootstrap methods to assess accuracy and stability of estimated network structures
and centrality indices. Allows for flexible specification of any undirected network
estimation procedure in R, and offers default sets for 'qgraph', 'IsingFit', 'IsingSampler',
'glasso', 'huge' and 'parcor' packages.
Author: Sacha Epskamp [aut, cre],
Eiko I. Fried [ctb]
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between bootnet versions 1.1.0 dated 2018-07-27 and 1.2 dated 2019-01-24
DESCRIPTION | 16 - MD5 | 41 +-- NAMESPACE | 16 + NEWS | 20 + R/Smetric.R | 64 +++-- R/bootInclude.R |only R/bootTable.R | 98 +++++++- R/bootThreshold.R |only R/bootnet.R | 45 +++ R/bootnetResultsMethods.R | 22 + R/checkDefault.R |only R/checkInput.R | 6 R/defaultFunctions.R | 537 ++++++++++++++++++++++++++++++++++++++++++---- R/estimateNetwork.R | 13 - R/netSimulator.R | 8 R/plotMethod.R | 11 R/printMethod.R | 3 man/bootInclude.Rd |only man/bootThreshold.Rd |only man/bootnet.Rd | 61 ++++- man/corStability.Rd | 5 man/estimateNetwork.Rd | 53 ++++ man/plot.bootnet.Rd | 2 man/plotBootnetResult.Rd | 8 24 files changed, 884 insertions(+), 145 deletions(-)
Title: Smooth Additive Quantile Regression Models
Description: Smooth additive quantile regression models, fitted using
the methods of Fasiolo et al. (2017) <arXiv:1707.03307>. Differently from
'quantreg', the smoothing parameters are estimated automatically by marginal
loss minimization, while the regression coefficients are estimated using either
PIRLS or Newton algorithm. The learning rate is determined so that the Bayesian
credible intervals of the estimated effects have approximately the correct
coverage. The main function is qgam() which is similar to gam() in 'mgcv', but
fits non-parametric quantile regression models.
Author: Matteo Fasiolo [aut, cre],
Simon N. Wood [ctb],
Yannig Goude [ctb],
Raphael Nedellec [ctb]
Maintainer: Matteo Fasiolo <matteo.fasiolo@gmail.com>
Diff between qgam versions 1.2.2 dated 2018-05-28 and 1.2.3 dated 2019-01-24
DESCRIPTION | 8 - MD5 | 30 +++---- R/I_allVars1.R |only R/I_cleanData.R |only R/I_llkGrads.R | 13 +-- R/I_sandwichLoss.R | 7 + R/I_tuneLearnBootstrapping.R | 14 ++- R/elflss.R | 12 +- R/mqgam.R | 6 - R/qgam.R | 13 +-- R/tuneLearn.R | 6 - R/tuneLearnFast.R | 8 + inst/CITATION | 4 inst/doc/qgam.R | 54 ++++++++++++ inst/doc/qgam.Rmd | 83 +++++++++++++++++++ inst/doc/qgam.html | 180 ++++++++++++++++++++++++++++++++++++------- vignettes/qgam.Rmd | 83 +++++++++++++++++++ 17 files changed, 448 insertions(+), 73 deletions(-)
Title: Ordinal Forests: Prediction and Variable Ranking with Ordinal
Target Variables
Description: The ordinal forest (OF) method allows ordinal regression with high-dimensional
and low-dimensional data. After having constructed an OF prediction rule using a training dataset,
it can be used to predict the values of the ordinal target variable for new observations.
Moreover, by means of the (permutation-based) variable importance measure of OF, it is also
possible to rank the covariates with respect to their importances in the prediction of the
values of the ordinal target variable.
OF is presented in Hornung (2019).
The main functions of the package are: ordfor() (construction of OF) and predict.ordfor()
(prediction of the target variable values of new observations).
References:
Hornung R. (2019) Ordinal Forests. Journal of Classification,
<doi:10.1007/s00357-018-9302-x>.
Author: Roman Hornung
Maintainer: Roman Hornung <hornung@ibe.med.uni-muenchen.de>
Diff between ordinalForest versions 2.2 dated 2018-07-16 and 2.3 dated 2019-01-24
DESCRIPTION | 16 ++++++++-------- MD5 | 23 ++++++++++++----------- R/ordfor.R | 33 +++++++++++++++++++++++---------- R/ordinalForest-package.R | 4 ++-- R/perff.R | 2 +- R/predict.ordfor.R | 2 +- build |only inst/include/ordinalForest.h | 2 +- man/hearth.Rd | 1 + man/ordfor.Rd | 35 +++++++++++++++++++++++++---------- man/ordinalForest-package.Rd | 4 ++-- man/perff.Rd | 2 +- man/predict.ordfor.Rd | 2 +- 13 files changed, 78 insertions(+), 48 deletions(-)
Title: Calculates the Test-Statistic for the Drift Burst Hypothesis
Description: Calculates the T-Statistic for the drift burst hypothesis from the working paper Christensen, Oomen and Reno (2018) <DOI:10.2139/ssrn.2842535>. The authors' MATLAB code is available upon request, see: <https://papers.ssrn.com/sol3/papers.cfm?abstract_id=2842535>.
Author: Emil Sjoerup
Maintainer: Emil Sjoerup <emilsjoerup@live.dk>
Diff between DriftBurstHypothesis versions 0.1 dated 2019-01-02 and 0.1.1 dated 2019-01-24
ChangeLog |only DESCRIPTION | 8 - MD5 | 17 ++-- R/Driftbursts.R | 37 +++++---- R/RcppExports.R | 8 - build/partial.rdb |binary man/drift_bursts.Rd | 18 +--- src/DBH.cpp | 210 +++++++++++++++++++++++++++------------------------- src/Makevars.win | 3 src/RcppExports.cpp | 38 ++++----- 10 files changed, 180 insertions(+), 159 deletions(-)
More information about DriftBurstHypothesis at CRAN
Permanent link
Title: Retrieve Flu Season Data from the United States Centers for
Disease Control and Prevention ('CDC') 'FluView' Portal
Description: The 'U.S.' Centers for Disease Control and Prevention (CDC) maintain
a portal <http://gis.cdc.gov/grasp/fluview/fluportaldashboard.html> for
accessing state, regional and national influenza statistics as well as
mortality surveillance data. The web interface makes it difficult and
time-consuming to select and retrieve influenza data. Tools are provided
to access the data provided by the portal's underlying 'API'.
Author: Bob Rudis [aut, cre] (<https://orcid.org/0000-0001-5670-2640>),
Craig McGowan [ctb] (<https://orcid.org/0000-0002-6298-0185>),
JJ Chen [ctb] (<https://orcid.org/0000-0001-8482-8398>),
Sebastian Meyer [ctb] (<https://orcid.org/0000-0002-1791-9449>),
James Turtle [ctb] (<https://orcid.org/0000-0003-0735-7769>)
Maintainer: Bob Rudis <bob@rud.is>
Diff between cdcfluview versions 0.7.0 dated 2017-11-14 and 0.9.0 dated 2019-01-24
cdcfluview-0.7.0/cdcfluview/R/get-mortality-surveillance-data.r |only cdcfluview-0.7.0/cdcfluview/man/get_mortality_surveillance_data.Rd |only cdcfluview-0.9.0/cdcfluview/DESCRIPTION | 38 +++-- cdcfluview-0.9.0/cdcfluview/LICENSE | 2 cdcfluview-0.9.0/cdcfluview/MD5 | 72 ++++------ cdcfluview-0.9.0/cdcfluview/NAMESPACE | 3 cdcfluview-0.9.0/cdcfluview/R/aaa.R | 2 cdcfluview-0.9.0/cdcfluview/R/agd-ipt.r | 3 cdcfluview-0.9.0/cdcfluview/R/cdcfluview-package.R | 8 - cdcfluview-0.9.0/cdcfluview/R/geographic-spread.R | 4 cdcfluview-0.9.0/cdcfluview/R/get-flu-data.r | 5 cdcfluview-0.9.0/cdcfluview/R/get-hosp-data.r | 2 cdcfluview-0.9.0/cdcfluview/R/get-state-data.r | 9 - cdcfluview-0.9.0/cdcfluview/R/get-weekly-flu-report.r | 6 cdcfluview-0.9.0/cdcfluview/R/hospital.r | 9 - cdcfluview-0.9.0/cdcfluview/R/ili-weekly-state.r | 4 cdcfluview-0.9.0/cdcfluview/R/ilinet.r | 71 +++++---- cdcfluview-0.9.0/cdcfluview/R/mmwr-map.r | 13 - cdcfluview-0.9.0/cdcfluview/R/pi-mortality.r | 21 +- cdcfluview-0.9.0/cdcfluview/R/utils.r | 2 cdcfluview-0.9.0/cdcfluview/R/zzz.r | 4 cdcfluview-0.9.0/cdcfluview/man/age_group_distribution.Rd | 14 + cdcfluview-0.9.0/cdcfluview/man/cdcfluview.Rd | 2 cdcfluview-0.9.0/cdcfluview/man/geographic_spread.Rd | 2 cdcfluview-0.9.0/cdcfluview/man/get_flu_data.Rd | 10 - cdcfluview-0.9.0/cdcfluview/man/get_hosp_data.Rd | 2 cdcfluview-0.9.0/cdcfluview/man/get_state_data.Rd | 7 cdcfluview-0.9.0/cdcfluview/man/get_weekly_flu_report.Rd | 2 cdcfluview-0.9.0/cdcfluview/man/ili_weekly_activity_indicators.Rd | 2 cdcfluview-0.9.0/cdcfluview/man/ilinet.Rd | 8 - cdcfluview-0.9.0/cdcfluview/man/mmwr_week.Rd | 2 cdcfluview-0.9.0/cdcfluview/man/mmwr_week_to_date.Rd | 2 cdcfluview-0.9.0/cdcfluview/man/mmwr_weekday.Rd | 2 cdcfluview-0.9.0/cdcfluview/man/pi_mortality.Rd | 3 cdcfluview-0.9.0/cdcfluview/man/state_data_providers.Rd | 2 cdcfluview-0.9.0/cdcfluview/man/surveillance_areas.Rd | 2 cdcfluview-0.9.0/cdcfluview/man/who_nrevss.Rd | 3 cdcfluview-0.9.0/cdcfluview/tests/testthat/test-cdcfluview.R | 19 -- 38 files changed, 183 insertions(+), 179 deletions(-)
Title: Semantically Rich I/O for the 'NeXML' Format
Description: Provides access to phyloinformatic data in 'NeXML' format. The
package should add new functionality to R such as the possibility to
manipulate 'NeXML' objects in more various and refined way and compatibility
with 'ape' objects.
Author: Carl Boettiger [cre, aut] (<https://orcid.org/0000-0002-1642-628X>),
Scott Chamberlain [aut] (<https://orcid.org/0000-0003-1444-9135>),
Hilmar Lapp [aut] (<https://orcid.org/0000-0001-9107-0714>),
Kseniia Shumelchyk [aut],
Rutger Vos [aut] (<https://orcid.org/0000-0001-9254-7318>)
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between RNeXML versions 2.2.0 dated 2018-11-01 and 2.3.0 dated 2019-01-24
RNeXML-2.2.0/RNeXML/data |only RNeXML-2.2.0/RNeXML/man/c-ListOfmeta-method.Rd |only RNeXML-2.2.0/RNeXML/man/c-meta-method.Rd |only RNeXML-2.2.0/RNeXML/man/nexml_to_simmap.Rd |only RNeXML-2.2.0/RNeXML/man/simmap_ex.Rd |only RNeXML-2.3.0/RNeXML/DESCRIPTION | 36 RNeXML-2.3.0/RNeXML/MD5 | 145 RNeXML-2.3.0/RNeXML/NAMESPACE | 45 RNeXML-2.3.0/RNeXML/NEWS.md | 24 RNeXML-2.3.0/RNeXML/R/S4-utils.R |only RNeXML-2.3.0/RNeXML/R/add_basic_meta.R | 41 RNeXML-2.3.0/RNeXML/R/add_characters.R | 44 RNeXML-2.3.0/RNeXML/R/add_meta.R | 20 RNeXML-2.3.0/RNeXML/R/add_namespaces.R | 35 RNeXML-2.3.0/RNeXML/R/add_trees.R | 23 RNeXML-2.3.0/RNeXML/R/character_classes.R | 74 RNeXML-2.3.0/RNeXML/R/classes.R | 275 - RNeXML-2.3.0/RNeXML/R/concatenate_nexml.R | 6 RNeXML-2.3.0/RNeXML/R/constructors.R |only RNeXML-2.3.0/RNeXML/R/get_basic_metadata.R | 65 RNeXML-2.3.0/RNeXML/R/get_level.R | 59 RNeXML-2.3.0/RNeXML/R/get_metadata.R | 129 RNeXML-2.3.0/RNeXML/R/get_trees.R | 27 RNeXML-2.3.0/RNeXML/R/meta.R | 220 - RNeXML-2.3.0/RNeXML/R/nexmlTree.R | 8 RNeXML-2.3.0/RNeXML/R/nexml_write.R | 16 RNeXML-2.3.0/RNeXML/R/prefixed-uris.R |only RNeXML-2.3.0/RNeXML/R/simmap.R | 47 RNeXML-2.3.0/RNeXML/R/taxize_nexml.R | 55 RNeXML-2.3.0/RNeXML/R/utils.R |only RNeXML-2.3.0/RNeXML/README.md | 322 - RNeXML-2.3.0/RNeXML/build/vignette.rds |binary RNeXML-2.3.0/RNeXML/inst/WORDLIST | 36 RNeXML-2.3.0/RNeXML/inst/doc/S4.html | 38 RNeXML-2.3.0/RNeXML/inst/doc/intro.R |only RNeXML-2.3.0/RNeXML/inst/doc/intro.Rmd |only RNeXML-2.3.0/RNeXML/inst/doc/intro.html |only RNeXML-2.3.0/RNeXML/inst/doc/metadata.R | 5 RNeXML-2.3.0/RNeXML/inst/doc/metadata.Rmd | 15 RNeXML-2.3.0/RNeXML/inst/doc/metadata.html | 2733 +++++++------ RNeXML-2.3.0/RNeXML/inst/doc/simmap.R | 3 RNeXML-2.3.0/RNeXML/inst/doc/simmap.Rmd | 4 RNeXML-2.3.0/RNeXML/inst/doc/simmap.html | 41 RNeXML-2.3.0/RNeXML/inst/doc/sparql.html | 34 RNeXML-2.3.0/RNeXML/inst/examples/coal.xml |only RNeXML-2.3.0/RNeXML/inst/examples/meta_example.xml | 5 RNeXML-2.3.0/RNeXML/inst/examples/no-base-ns.xml |only RNeXML-2.3.0/RNeXML/inst/examples/phenex.xml |only RNeXML-2.3.0/RNeXML/inst/examples/simmap_ex.xml |only RNeXML-2.3.0/RNeXML/man/Annotated-class.Rd |only RNeXML-2.3.0/RNeXML/man/New.Rd |only RNeXML-2.3.0/RNeXML/man/add_basic_meta.Rd | 2 RNeXML-2.3.0/RNeXML/man/add_meta.Rd | 2 RNeXML-2.3.0/RNeXML/man/add_namespaces.Rd | 38 RNeXML-2.3.0/RNeXML/man/add_trees.Rd | 2 RNeXML-2.3.0/RNeXML/man/c-meta.Rd |only RNeXML-2.3.0/RNeXML/man/coalesce_.Rd |only RNeXML-2.3.0/RNeXML/man/constructors.Rd |only RNeXML-2.3.0/RNeXML/man/dot-callGeneric.Rd |only RNeXML-2.3.0/RNeXML/man/dot-methodWithNext.Rd |only RNeXML-2.3.0/RNeXML/man/dot-sigLabel.Rd |only RNeXML-2.3.0/RNeXML/man/expand_prefix.Rd |only RNeXML-2.3.0/RNeXML/man/figures |only RNeXML-2.3.0/RNeXML/man/findNextMethod.Rd |only RNeXML-2.3.0/RNeXML/man/get_all_meta.Rd |only RNeXML-2.3.0/RNeXML/man/get_citation.Rd | 17 RNeXML-2.3.0/RNeXML/man/get_license.Rd | 17 RNeXML-2.3.0/RNeXML/man/get_meta.Rd |only RNeXML-2.3.0/RNeXML/man/get_metadata.Rd | 19 RNeXML-2.3.0/RNeXML/man/get_metadata_values.Rd |only RNeXML-2.3.0/RNeXML/man/lcapply.Rd |only RNeXML-2.3.0/RNeXML/man/meta.Rd | 6 RNeXML-2.3.0/RNeXML/man/nexml-class.Rd |only RNeXML-2.3.0/RNeXML/man/nexml_write.Rd | 2 RNeXML-2.3.0/RNeXML/man/simmap_to_nexml.Rd | 23 RNeXML-2.3.0/RNeXML/man/slot-ResourceMeta-method.Rd |only RNeXML-2.3.0/RNeXML/man/taxize_nexml.Rd | 7 RNeXML-2.3.0/RNeXML/tests/testthat/Rplots.pdf |only RNeXML-2.3.0/RNeXML/tests/testthat/helper-RNeXML.R | 6 RNeXML-2.3.0/RNeXML/tests/testthat/test_01_exported_util.R |only RNeXML-2.3.0/RNeXML/tests/testthat/test_01_utils.R |only RNeXML-2.3.0/RNeXML/tests/testthat/test_ape.R | 13 RNeXML-2.3.0/RNeXML/tests/testthat/test_concatenate.R | 75 RNeXML-2.3.0/RNeXML/tests/testthat/test_inheritance.R | 21 RNeXML-2.3.0/RNeXML/tests/testthat/test_meta.R | 121 RNeXML-2.3.0/RNeXML/tests/testthat/test_meta_extract.R | 220 - RNeXML-2.3.0/RNeXML/tests/testthat/test_parsing.R | 57 RNeXML-2.3.0/RNeXML/tests/testthat/test_serializing.R | 45 RNeXML-2.3.0/RNeXML/tools/README-unnamed-chunk-5-1.png |binary RNeXML-2.3.0/RNeXML/vignettes/intro.Rmd |only RNeXML-2.3.0/RNeXML/vignettes/metadata.Rmd | 15 RNeXML-2.3.0/RNeXML/vignettes/simmap.Rmd | 4 92 files changed, 3195 insertions(+), 2147 deletions(-)
Title: Interpolation and Extrapolation for Species Diversity
Description: Provides simple functions to compute and plot two
types (sample-size- and coverage-based) rarefaction and extrapolation of species
diversity (Hill numbers) for individual-based (abundance) data or sampling-unit-
based (incidence) data.
Author: T. C. Hsieh, K. H. Ma and Anne Chao
Maintainer: T. C. Hsieh <euler96@gmail.com>
Diff between iNEXT versions 2.0.18 dated 2018-12-15 and 2.0.19 dated 2019-01-24
DESCRIPTION | 6 - MD5 | 12 +- NEWS | 5 R/JADE.R | 24 ++++ R/ggiNEXT.R | 4 R/iNEXT.r | 243 ++++++++++++++++++++++++--------------------- inst/doc/Introduction.html | 84 +++++++-------- 7 files changed, 211 insertions(+), 167 deletions(-)
Title: Bayesian Network Structure Learning
Description: From a given data frame, this package learns its Bayesian network structure based on a selected score.
Author: Joe Suzuki and Jun Kawahara
Maintainer: Joe Suzuki <j-suzuki@sigmath.es.osaka-u.ac.jp>
Diff between BNSL versions 0.1.3 dated 2017-09-18 and 0.1.4 dated 2019-01-24
DESCRIPTION | 8 MD5 | 42 ++- NAMESPACE | 25 +- R/RcppExports.R | 242 +++++++++---------- R/aster.R | 61 ++-- R/parent_set.R | 36 +- man/BNSL-package.Rd | 64 ++--- man/FFtable.Rd | 44 +-- man/bnsl.Rd | 78 +++--- man/bnsl_p.Rd |only man/cmi.Rd | 98 +++---- man/kruskal.Rd | 66 ++--- man/mi.Rd | 92 +++---- man/mi_matrix.Rd | 82 +++--- man/parent.Rd | 96 +++---- src/ASterQueue.h |only src/OrderNode.h |only src/ParentScore.h |only src/RcppExports.cpp | 17 + src/aster.cpp | 648 +++------------------------------------------------- src/fftable.cpp |only src/fftable.h |only src/parent_set.cpp | 247 ++++++------------- src/parent_set.h | 13 - src/score.cpp |only src/score.h |only 26 files changed, 673 insertions(+), 1286 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-08-11 1.0
Title: Data Sets from Ramsey and Schafer's "Statistical Sleuth (2nd
Ed)"
Description: Data sets from Ramsey, F.L. and Schafer, D.W. (2002), "The
Statistical Sleuth: A Course in Methods of Data Analysis (2nd
ed)", Duxbury.
Author: Original by F.L. Ramsey and D.W. Schafer;
modifications by Daniel W. Schafer, Jeannie Sifneos and Berwin
A. Turlach; vignettes contributed by Nicholas Horton, Kate Aloisio
and Ruobing Zhang, with corrections by Randall Pruim
Maintainer: Berwin A Turlach <Berwin.Turlach@gmail.com>
Diff between Sleuth2 versions 2.0-4.1 dated 2019-01-23 and 2.0-5 dated 2019-01-24
Sleuth2-2.0-4.1/Sleuth2/inst/doc/chapter01-HortonMosaic.R |only Sleuth2-2.0-4.1/Sleuth2/inst/doc/chapter02-HortonMosaic.R |only Sleuth2-2.0-4.1/Sleuth2/inst/doc/chapter03-HortonMosaic.R |only Sleuth2-2.0-4.1/Sleuth2/inst/doc/chapter04-HortonMosaic.R |only Sleuth2-2.0-4.1/Sleuth2/inst/doc/chapter05-HortonMosaic.R |only Sleuth2-2.0-4.1/Sleuth2/inst/doc/chapter06-HortonMosaic.R |only Sleuth2-2.0-4.1/Sleuth2/inst/doc/chapter07-HortonMosaic.R |only Sleuth2-2.0-4.1/Sleuth2/inst/doc/chapter08-HortonMosaic.R |only Sleuth2-2.0-4.1/Sleuth2/inst/doc/chapter09-HortonMosaic.R |only Sleuth2-2.0-4.1/Sleuth2/inst/doc/chapter10-HortonMosaic.R |only Sleuth2-2.0-4.1/Sleuth2/inst/doc/chapter11-HortonMosaic.R |only Sleuth2-2.0-4.1/Sleuth2/inst/doc/chapter12-HortonMosaic.R |only Sleuth2-2.0-4.1/Sleuth2/inst/doc/chapter13-HortonMosaic.R |only Sleuth2-2.0-5/Sleuth2/DESCRIPTION | 19 Sleuth2-2.0-5/Sleuth2/MD5 | 333 ++++++------- Sleuth2-2.0-5/Sleuth2/build/vignette.rds |binary 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Title: 'DEoptim' and 'DEoptimR' Plugin for the 'R' Optimization
Interface
Description: Enhances the R Optimization Infrastructure ('ROI') package
with the 'DEoptim' and 'DEoptimR' package. 'DEoptim' is
used for unconstrained optimization and 'DEoptimR' for
constrained optimization.
Author: Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between ROI.plugin.deoptim versions 0.3-0 dated 2017-10-23 and 0.3-2 dated 2019-01-24
DESCRIPTION | 8 +-- MD5 | 17 ++++---- NAMESPACE | 4 - R/solve.R | 63 +++++++++++++++++++----------- R/zzz.R | 79 +++++++++++++++++++++++++------------- man/Example_01.Rd | 6 +- man/Example_02.Rd | 4 + man/Example_03.Rd | 6 +- man/ROI.plugin.deoptim-package.Rd |only tests/test_deoptim.R | 32 ++++++++++----- 10 files changed, 138 insertions(+), 81 deletions(-)
More information about ROI.plugin.deoptim at CRAN
Permanent link
Title: The Lorentz Transform in Relativistic Physics
Description: This
package furnishes functionality to work with Lorentz transforms in special
relativity. It also implements the gyrogroup structure of three-velocities
following Ungar (2006) <doi:10.1088/0143-0807/27/3/L02>. For general
relativity, see the 'schwarzschild' package.
Author: Robin K. S. Hankin
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between lorentz versions 1.0-0 dated 2018-10-08 and 1.0-1 dated 2019-01-24
lorentz-1.0-0/lorentz/inst/Lorentz_tester.R |only lorentz-1.0-0/lorentz/inst/lorentz_nonassociative.svg |only lorentz-1.0-1/lorentz/DESCRIPTION | 17 lorentz-1.0-1/lorentz/MD5 | 56 lorentz-1.0-1/lorentz/NAMESPACE | 19 lorentz-1.0-1/lorentz/R/gyrogroup.R | 107 - lorentz-1.0-1/lorentz/R/nullvector.R |only lorentz-1.0-1/lorentz/R/stress_energy_tensor.R |only lorentz-1.0-1/lorentz/build/partial.rdb |binary lorentz-1.0-1/lorentz/build/vignette.rds |binary lorentz-1.0-1/lorentz/inst/3dplotting.R | 5 lorentz-1.0-1/lorentz/inst/distributive_search.R | 4 lorentz-1.0-1/lorentz/inst/doc/lorentz.R | 270 ++- lorentz-1.0-1/lorentz/inst/doc/lorentz.Rnw | 578 ++++++- lorentz-1.0-1/lorentz/inst/doc/lorentz.pdf |binary lorentz-1.0-1/lorentz/inst/lorentz_noncommutative.svg | 1480 ++++++++++++------ lorentz-1.0-1/lorentz/man/3vel.Rd | 13 lorentz-1.0-1/lorentz/man/4mom.Rd |only lorentz-1.0-1/lorentz/man/4vel.Rd | 28 lorentz-1.0-1/lorentz/man/Ops.3vec.Rd | 14 lorentz-1.0-1/lorentz/man/boost.Rd | 14 lorentz-1.0-1/lorentz/man/coordnames.Rd |only lorentz-1.0-1/lorentz/man/gam.Rd | 28 lorentz-1.0-1/lorentz/man/lorentz-package.Rd | 8 lorentz-1.0-1/lorentz/man/photon.Rd |only lorentz-1.0-1/lorentz/man/print.Rd | 2 lorentz-1.0-1/lorentz/man/r3vel.Rd | 13 lorentz-1.0-1/lorentz/man/reflect.Rd |only lorentz-1.0-1/lorentz/man/set.Rd |only lorentz-1.0-1/lorentz/man/sol.Rd | 14 lorentz-1.0-1/lorentz/tests/aaa.R | 6 lorentz-1.0-1/lorentz/tests/aab.R |only lorentz-1.0-1/lorentz/vignettes/lorentz.Rnw | 578 ++++++- lorentz-1.0-1/lorentz/vignettes/lorentz.bib | 18 34 files changed, 2535 insertions(+), 737 deletions(-)
Title: Choice Item Response Theory
Description: Jointly model the accuracy of cognitive responses and item choices
within a bayesian hierarchical framework as described by Culpepper and
Balamuta (2015) <doi:10.1007/s11336-015-9484-7>. In addition, the package
contains the datasets used within the analysis of the paper.
Author: Steven Andrew Culpepper [aut, cph]
(<https://orcid.org/0000-0003-4226-6176>),
James Joseph Balamuta [aut, cph, cre]
(<https://orcid.org/0000-0003-2826-8458>)
Maintainer: James Joseph Balamuta <balamut2@illinois.edu>
Diff between cIRT versions 1.2.1 dated 2017-04-26 and 1.3.0 dated 2019-01-24
cIRT-1.2.1/cIRT/R/choice_matrix.R |only cIRT-1.2.1/cIRT/R/payout_matrix.R |only cIRT-1.2.1/cIRT/R/survey_data.R |only cIRT-1.2.1/cIRT/R/trial_matrix.R |only cIRT-1.2.1/cIRT/man/cIRT_package.Rd |only cIRT-1.2.1/cIRT/src/init.c |only cIRT-1.3.0/cIRT/DESCRIPTION | 38 cIRT-1.3.0/cIRT/MD5 | 82 cIRT-1.3.0/cIRT/NAMESPACE | 2 cIRT-1.3.0/cIRT/NEWS.md | 49 cIRT-1.3.0/cIRT/R/RcppExports.R | 566 ++- cIRT-1.3.0/cIRT/R/cIRT-package.R | 30 cIRT-1.3.0/cIRT/R/data-documentation.R |only cIRT-1.3.0/cIRT/build/vignette.rds |binary cIRT-1.3.0/cIRT/inst/CITATION | 13 cIRT-1.3.0/cIRT/inst/doc/Estimating-the-Model-in-the-Paper.R | 79 cIRT-1.3.0/cIRT/inst/doc/Estimating-the-Model-in-the-Paper.Rmd | 94 cIRT-1.3.0/cIRT/inst/doc/Estimating-the-Model-in-the-Paper.html | 588 ++- cIRT-1.3.0/cIRT/inst/doc/Package-Overview.html | 190 + cIRT-1.3.0/cIRT/inst/doc/Simulation-Study-with-cIRT.html | 752 +++-- cIRT-1.3.0/cIRT/man/Generate_Choice.Rd | 29 cIRT-1.3.0/cIRT/man/Total_Tabulate.Rd | 4 cIRT-1.3.0/cIRT/man/TwoPLChoicemcmc.Rd | 76 cIRT-1.3.0/cIRT/man/cIRT-package.Rd |only cIRT-1.3.0/cIRT/man/cIRT.Rd | 133 cIRT-1.3.0/cIRT/man/center_matrix.Rd | 16 cIRT-1.3.0/cIRT/man/choice_matrix.Rd | 24 cIRT-1.3.0/cIRT/man/direct_sum.Rd | 22 cIRT-1.3.0/cIRT/man/payout_matrix.Rd | 16 cIRT-1.3.0/cIRT/man/probitHLM.Rd | 82 cIRT-1.3.0/cIRT/man/riwishart.Rd | 12 cIRT-1.3.0/cIRT/man/rmvnorm.Rd | 16 cIRT-1.3.0/cIRT/man/rwishart.Rd | 18 cIRT-1.3.0/cIRT/man/survey_data.Rd | 24 cIRT-1.3.0/cIRT/man/trial_matrix.Rd | 70 cIRT-1.3.0/cIRT/src/Makevars | 9 cIRT-1.3.0/cIRT/src/Makevars.win | 8 cIRT-1.3.0/cIRT/src/RcppExports.cpp | 51 cIRT-1.3.0/cIRT/src/armadillo_manipulations.cpp | 163 - cIRT-1.3.0/cIRT/src/armadillo_manipulations.h | 5 cIRT-1.3.0/cIRT/src/project_source.cpp | 1485 +++++----- cIRT-1.3.0/cIRT/src/rgens.cpp | 155 - cIRT-1.3.0/cIRT/src/rgens.h | 8 cIRT-1.3.0/cIRT/src/total_cpp.cpp | 182 - cIRT-1.3.0/cIRT/src/total_cpp.h | 21 cIRT-1.3.0/cIRT/vignettes/Estimating-the-Model-in-the-Paper.Rmd | 94 46 files changed, 3193 insertions(+), 2013 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-30 0.1.2
2018-03-15 0.1.1
2018-02-27 0.1.0
2017-12-01 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-30 0.3.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-01 0.9.19
2017-09-14 0.9.18
2017-03-16 0.9.16
2016-12-14 0.9.15
2016-03-31 0.9.14
2015-03-22 0.9.13
2015-03-04 0.9.12
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-16 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-18 0.6.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-07 0.3.4
2018-06-07 0.3.3
2018-02-12 0.3.2
2018-02-05 0.3.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-10 0.4.0
2016-06-13 0.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-19 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-29 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-23 0.2.1
2018-06-17 0.2.0
2018-01-12 0.1.1
2018-01-08 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-05 1.2.0
2017-08-28 1.1.3
2017-01-23 1.1.1
2016-11-22 1.1.0
2016-08-16 1.0.5
2016-04-05 1.0.4
2016-03-07 1.0.3
2016-02-06 1.0.2
2016-01-24 1.0.1
2015-12-27 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-18 0.2
2017-09-04 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-20 2.7.6
2018-11-09 2.7.4
2018-06-25 2.6.5
2018-06-10 2.6.4
2017-10-18 2.5.0
2017-05-17 2.4.0
2017-04-06 2.3.1
2017-03-07 2.3.0
2017-01-23 2.2.0
2017-01-07 2.1.1
2016-12-22 2.1.0
2016-11-19 2.0.0
2016-06-15 1.1.6
2016-02-25 1.1.5.2
2016-02-17 1.1.5.1
2015-12-16 1.1.5
2015-10-12 1.1.3
2015-08-10 1.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-11 0.3.0
2018-07-05 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-03 1.1.7.4
2018-09-13 1.1.7.1
2018-08-24 1.1.6
2018-03-21 1.1.1
2017-10-22 1.0.0
Title: Combine Data from Positive and Negative Ionization Mode Finding
Common Entities
Description: Find common entities detected in both positive and negative
ionization mode, delete this entity in the less sensible mode and combine both
matrices.
Author: Monica Calderon-Santiago
Maintainer: Monica Calderon-Santiago <b42casam@uco.es>
Diff between MScombine versions 1.2 dated 2018-12-20 and 1.3 dated 2019-01-24
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/FindCommon.R | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Generate Codes to Uniquely and Robustly Identify Individuals for
Animal Behavior Studies
Description: Facilitates the design and generation of optimal color (or symbol) codes that can be used to mark and identify individual animals. These codes are made such that the IDs are robust to partial erasure: even if sections of the code are lost, the entire identity of the animal can be reconstructed. Thus, animal subjects are not confused and no ambiguity is introduced.
Author: Andrew Taylor Burchill [aut, cre],
Theodore P. Pavlic [ctb]
Maintainer: Andrew Taylor Burchill <andrew.burchill@asu.edu>
Diff between rabi versions 0.1.0 dated 2017-10-18 and 1.0.0 dated 2019-01-24
rabi-0.1.0/rabi/inst/doc/README.html |only rabi-1.0.0/rabi/DESCRIPTION | 14 +- rabi-1.0.0/rabi/MD5 | 39 ++++--- rabi-1.0.0/rabi/NAMESPACE | 2 rabi-1.0.0/rabi/NEWS.md |only rabi-1.0.0/rabi/R/brutegenerator.R | 6 - rabi-1.0.0/rabi/R/exampleGUI.R |only rabi-1.0.0/rabi/R/howmany.R | 2 rabi-1.0.0/rabi/R/pkgname.R | 2 rabi-1.0.0/rabi/R/poversample.R | 2 rabi-1.0.0/rabi/R/tweaker.R | 6 - rabi-1.0.0/rabi/README.md | 13 +- rabi-1.0.0/rabi/build/vignette.rds |binary rabi-1.0.0/rabi/inst/doc/loosebirdtag.R | 12 +- rabi-1.0.0/rabi/inst/doc/loosebirdtag.Rmd | 30 +++-- rabi-1.0.0/rabi/inst/doc/loosebirdtag.html | 149 ++++++++++++++++------------- rabi-1.0.0/rabi/inst/gui-example |only rabi-1.0.0/rabi/man/brute_IDs.Rd | 6 - rabi-1.0.0/rabi/man/exampleGUI.Rd |only rabi-1.0.0/rabi/man/rabi.Rd | 3 rabi-1.0.0/rabi/man/rs_IDs.Rd | 2 rabi-1.0.0/rabi/man/tweaked_IDs.Rd | 9 + rabi-1.0.0/rabi/vignettes/loosebirdtag.Rmd | 12 +- 23 files changed, 177 insertions(+), 132 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-09 1.0.1
2018-10-22 1.0.0
2018-08-24 0.1.1
2018-08-07 0.1.0
Title: Spongebob-Case Converter : spOngEboB-CASe CoNVertOR
Description: Convert character strings to Spongebob case. CoNVErt ChaRaCTer
StRINgs TO spONGebOB caSE.
Author: Jay Qi [aut, cre]
Maintainer: Jay Qi <jayqi.opensource@gmail.com>
Diff between spongebob versions 0.1 dated 2019-01-12 and 0.2.0 dated 2019-01-24
DESCRIPTION | 16 ++++--- MD5 | 11 ++-- NEWS.md |only R/spongebob.R | 90 ++++++++++++++++++++++++++-------------- README.md | 45 +++++++++++++++++++- man/tospongebob.Rd | 18 ++++---- tests/testthat/test_spongebob.R | 13 +++++ 7 files changed, 145 insertions(+), 48 deletions(-)
Title: Statistical Process Control for Stochastic Textured Surfaces
Description: Provides statistical process control tools for stochastic
textured surfaces. The current version supports the following tools:
(1) generic modeling of stochastic textured surfaces.
(2) local defect monitoring and diagnostics in stochastic
textured surfaces, which was proposed by Bui and Apley (2018a)
<doi:10.1080/00401706.2017.1302362>.
(3) global change monitoring in the nature of stochastic
textured surfaces, which was proposed by Bui and Apley (2018b)
<doi:10.1080/00224065.2018.1507559>.
(4) computation of dissimilarity matrix of stochastic textured
surface images.
Author: Anh Bui [aut, cre] and Daniel Apley [ths]
Maintainer: Anh Bui <atbui@u.northwestern.edu>
Diff between spc4sts versions 0.3.1 dated 2018-04-09 and 0.4.0 dated 2019-01-24
DESCRIPTION | 18 +++++++++++------- MD5 | 34 +++++++++++++++++++--------------- NAMESPACE | 2 +- R/climit.R | 10 +++++++--- R/disMat.R |only R/monitoringStat.R | 3 ++- R/plotcc.R |only R/surfacemodel.R | 1 + man/climit.Rd | 5 ++--- man/climit.object.Rd | 4 ++-- man/dataPrep.Rd | 2 +- man/disMat.Rd |only man/mbChange.Rd | 4 ++-- man/monitoringStat.Rd | 4 ++-- man/plotcc.Rd |only man/sarGen.Rd | 2 +- man/showNb.Rd | 2 +- man/spaCov.Rd | 2 +- man/spc4sts-package.Rd | 30 +++++++++++++++++++----------- man/surfacemodel.Rd | 2 +- 20 files changed, 73 insertions(+), 52 deletions(-)
Title: Statistical Trending for Medical Devices Surveillance
Description: A collection of common statistical algorithms used in active
surveillance of medical device events. Context includes post-market
surveillance, pharmacovigilance, signal detection and trending, and
regulatory reporting. Primary inputs are device-event time series. Outputs
include trending results with the ability to run multiple algorithms at
once. This package works well with the 'mds' package, but does not require
it.
Author: Gary Chung [aut, cre],
Stephane Bottine [ctb] ((derived code from 'SPRT' package)),
Ismaïl Ahmed [ctb] ((derived code from 'PhViD' package)),
John Ihrie [ctb] ((derived code from 'openEBGM' package))
Maintainer: Gary Chung <gchung05@gmail.com>
Diff between mdsstat versions 0.2.1 dated 2018-12-11 and 0.2.2 dated 2019-01-24
DESCRIPTION | 20 +++++++++----- MD5 | 58 ++++++++++++++++++++++++----------------- NAMESPACE | 9 ++++++ NEWS.md | 19 +++++++++++-- R/additional.R | 34 ++++++++++++++++++++++-- R/bcpnn.R |only R/cusum.R | 10 +++++-- R/gps.R |only R/prr.R | 11 ++++--- R/ror.R | 11 ++++--- R/shewhart.R | 10 +++++-- R/sprt.R |only R/stats.R | 10 ++++--- build/vignette.rds |binary data/mds_ts.rda |binary inst/doc/mdsstat_intro.Rmd | 11 ++++--- inst/doc/mdsstat_intro.html | 40 +++++++++++++++------------- man/E2x2.Rd |only man/bcpnn.Rd |only man/gps.Rd |only man/prr.Rd | 6 ++-- man/ror.Rd | 6 ++-- man/run_algos.Rd | 2 - man/sprt.Rd |only man/test_as_row.Rd | 2 - tests/testthat/test_addtl.R | 57 +++++++++++++++++++++------------------- tests/testthat/test_bcpnn.R |only tests/testthat/test_cusum.R | 26 ++++++++++-------- tests/testthat/test_gps.R |only tests/testthat/test_prr.R | 30 ++++++++++++--------- tests/testthat/test_ror.R | 27 +++++++++---------- tests/testthat/test_shewhart.R | 26 ++++++++++-------- tests/testthat/test_sprt.R |only tests/testthat/test_stats.R | 23 ++++++++++------ vignettes/mdsstat_intro.Rmd | 11 ++++--- 35 files changed, 286 insertions(+), 173 deletions(-)