Title: C++ Header Files for Stan
Description: The C++ header files of the Stan project are provided by this package, but it contains no R code or function documentation. There is a shared object containing part of the 'CVODES' library, but it is not accessible from R. 'StanHeaders' is only useful for developers who want to utilize the 'LinkingTo' directive of their package's DESCRIPTION file to build on the Stan library without incurring unnecessary dependencies. The Stan project develops a probabilistic programming language that implements full or approximate Bayesian statistical inference via Markov Chain Monte Carlo or 'variational' methods and implements (optionally penalized) maximum likelihood estimation via optimization. The Stan library includes an advanced automatic differentiation scheme, 'templated' statistical and linear algebra functions that can handle the automatically 'differentiable' scalar types (and doubles, 'ints', etc.), and a parser for the Stan language. The 'rstan' package provides user-facing R functions to parse, compile, test, estimate, and analyze Stan models.
Author: Ben Goodrich [cre, aut],
Joshua Pritikin [ctb],
Andrew Gelman [aut],
Bob Carpenter [aut],
Matt Hoffman [aut],
Daniel Lee [aut],
Michael Betancourt [aut],
Marcus Brubaker [aut],
Jiqiang Guo [aut],
Peter Li [aut],
Allen Riddell [aut],
Marco Inacio [aut],
Mitzi Morris [aut],
Jeffrey Arnold [aut],
Rob Goedman [aut],
Brian Lau [aut],
Rob Trangucci [aut],
Jonah Gabry [aut],
Alp Kucukelbir [aut],
Robert Grant [aut],
Dustin Tran [aut],
Michael Malecki [aut],
Yuanjun Gao [aut],
Trustees of Columbia University [cph],
Lawrence Livermore National Security [cph] (CVODES),
The Regents of the University of California [cph] (CVODES),
Southern Methodist University [cph] (CVODES)
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Diff between StanHeaders versions 2.18.0-1 dated 2018-12-13 and 2.18.1 dated 2019-01-28
DESCRIPTION | 10 MD5 | 22 build/vignette.rds |binary inst/CITATION | 6 inst/doc/stanmath.Rmd | 33 inst/doc/stanmath.html | 344 ++++++++-- inst/include/src/stan/version.hpp | 2 inst/include/stan/math/prim/arr/functor/integrate_1d.hpp | 4 inst/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp | 3 inst/include/stan/math/rev/arr/functor/integrate_1d.hpp | 4 inst/include/stan/math/version.hpp | 2 vignettes/stanmath.Rmd | 33 12 files changed, 346 insertions(+), 117 deletions(-)
Title: Fit and Compare Species-Area Relationship Models Using
Multimodel Inference
Description: Implements the basic elements of the multi-model
inference paradigm for up to twenty species-area relationship models (SAR), using simple
R list-objects and functions, as in Triantis et al. 2012 <DOI:10.1111/j.1365-2699.2011.02652.x>.
The package is scalable and users can easily create their own model and data objects. Additional
SAR related functions are provided.
Author: Thomas J. Matthews [aut, cre],
Francois Guilhaumon [aut]
Maintainer: Thomas J. Matthews <txm676@gmail.com>
Diff between sars versions 1.0.0 dated 2018-08-13 and 1.1.0 dated 2019-01-28
sars-1.0.0/sars/R/fit_collection.R |only sars-1.0.0/sars/R/sar_expo.R |only sars-1.0.0/sars/R/sar_multi.R |only sars-1.0.0/sars/inst/non_lin_models/Mod_expo.R |only sars-1.0.0/sars/inst/refs |only sars-1.0.0/sars/man/fit_collection.Rd |only sars-1.0.0/sars/man/sar_expo.Rd |only sars-1.1.0/sars/DESCRIPTION | 20 sars-1.1.0/sars/MD5 | 186 ++--- sars-1.1.0/sars/NAMESPACE | 6 sars-1.1.0/sars/NEWS.md | 11 sars-1.1.0/sars/R/class_plot.R | 512 +++++++-------- sars-1.1.0/sars/R/class_print.R | 214 +++--- sars-1.1.0/sars/R/class_summary.R | 103 +-- sars-1.1.0/sars/R/coleman.R | 64 - sars-1.1.0/sars/R/coleman_plot.R | 25 sars-1.1.0/sars/R/compmod.R | 17 sars-1.1.0/sars/R/data_aegean.R | 2 sars-1.1.0/sars/R/data_galap.R | 2 sars-1.1.0/sars/R/data_niering.R | 2 sars-1.1.0/sars/R/gdm.R | 146 ++-- sars-1.1.0/sars/R/link_functions.R | 20 sars-1.1.0/sars/R/mmSAR2.R | 20 sars-1.1.0/sars/R/mod_linear_power.R | 82 +- sars-1.1.0/sars/R/obs_shape.R | 37 - sars-1.1.0/sars/R/optim.R | 182 +++-- sars-1.1.0/sars/R/sar_asymp.R | 68 + sars-1.1.0/sars/R/sar_average.R |only sars-1.1.0/sars/R/sar_betap.R | 63 - sars-1.1.0/sars/R/sar_chapman.R | 64 + sars-1.1.0/sars/R/sar_conf_int.R | 260 ++++--- sars-1.1.0/sars/R/sar_epm1.R | 70 +- sars-1.1.0/sars/R/sar_epm2.R | 46 - sars-1.1.0/sars/R/sar_gompertz.R | 46 - sars-1.1.0/sars/R/sar_heleg.R | 46 - sars-1.1.0/sars/R/sar_koba.R | 46 - sars-1.1.0/sars/R/sar_linear.R | 111 +-- sars-1.1.0/sars/R/sar_loga.R |only sars-1.1.0/sars/R/sar_mmf.R | 46 - sars-1.1.0/sars/R/sar_monod.R | 46 - sars-1.1.0/sars/R/sar_negexpo.R | 52 - sars-1.1.0/sars/R/sar_p1.R | 46 - sars-1.1.0/sars/R/sar_p2.R | 55 - sars-1.1.0/sars/R/sar_power.R | 47 - sars-1.1.0/sars/R/sar_powerR.R | 46 - sars-1.1.0/sars/R/sar_ratio.R | 46 - sars-1.1.0/sars/R/sar_weibull3.R | 46 - sars-1.1.0/sars/R/sar_weibull4.R | 46 - sars-1.1.0/sars/R/style.R | 2 sars-1.1.0/sars/R/sysdata.rda |only sars-1.1.0/sars/README.md | 168 ++-- sars-1.1.0/sars/inst/model_factory.R | 231 ++++-- sars-1.1.0/sars/inst/non_lin_models/Mod_asymp.R | 22 sars-1.1.0/sars/inst/non_lin_models/Mod_betap.R | 17 sars-1.1.0/sars/inst/non_lin_models/Mod_chapman.R | 18 sars-1.1.0/sars/inst/non_lin_models/Mod_epm1.R | 24 sars-1.1.0/sars/inst/non_lin_models/Mod_loga.R |only sars-1.1.0/sars/inst/non_lin_models/Mod_negexpo.R | 6 sars-1.1.0/sars/inst/non_lin_models/Mod_p2.R | 9 sars-1.1.0/sars/inst/non_lin_models/Mod_power.R | 2 sars-1.1.0/sars/man/coleman.Rd | 31 sars-1.1.0/sars/man/display_sars_models.Rd |only sars-1.1.0/sars/man/figures/README-unnamed-chunk-4-1.png |binary sars-1.1.0/sars/man/figures/README-unnamed-chunk-5-1.png |binary sars-1.1.0/sars/man/gdm.Rd | 105 +-- sars-1.1.0/sars/man/lin_pow.Rd | 49 - sars-1.1.0/sars/man/plot.coleman.Rd | 15 sars-1.1.0/sars/man/plot.multi.Rd | 145 ++-- sars-1.1.0/sars/man/plot.sars.Rd | 70 +- sars-1.1.0/sars/man/sar_asymp.Rd | 4 sars-1.1.0/sars/man/sar_average.Rd |only sars-1.1.0/sars/man/sar_betap.Rd | 4 sars-1.1.0/sars/man/sar_chapman.Rd | 4 sars-1.1.0/sars/man/sar_epm1.Rd | 4 sars-1.1.0/sars/man/sar_epm2.Rd | 4 sars-1.1.0/sars/man/sar_gompertz.Rd | 4 sars-1.1.0/sars/man/sar_heleg.Rd | 4 sars-1.1.0/sars/man/sar_koba.Rd | 4 sars-1.1.0/sars/man/sar_linear.Rd | 68 - sars-1.1.0/sars/man/sar_loga.Rd |only sars-1.1.0/sars/man/sar_mmf.Rd | 4 sars-1.1.0/sars/man/sar_monod.Rd | 4 sars-1.1.0/sars/man/sar_multi.Rd | 134 --- sars-1.1.0/sars/man/sar_negexpo.Rd | 4 sars-1.1.0/sars/man/sar_p1.Rd | 4 sars-1.1.0/sars/man/sar_p2.Rd | 4 sars-1.1.0/sars/man/sar_power.Rd | 4 sars-1.1.0/sars/man/sar_powerR.Rd | 4 sars-1.1.0/sars/man/sar_ratio.Rd | 4 sars-1.1.0/sars/man/sar_weibull3.Rd | 4 sars-1.1.0/sars/man/sar_weibull4.Rd | 4 sars-1.1.0/sars/man/sars-package.Rd | 20 sars-1.1.0/sars/man/sars_models.Rd |only sars-1.1.0/sars/man/summary.sars.Rd | 63 - sars-1.1.0/sars/tests |only 95 files changed, 2240 insertions(+), 1978 deletions(-)
Title: An R Client to the 'PatentsView' API
Description: Provides functions to simplify the 'PatentsView' API
(<http://www.patentsview.org/api/doc.html>) query language,
send GET and POST requests to the API's seven endpoints, and parse the data
that comes back.
Author: Christopher Baker [aut, cre]
Maintainer: Christopher Baker <chriscrewbaker@gmail.com>
Diff between patentsview versions 0.2.1 dated 2018-03-14 and 0.2.2 dated 2019-01-28
patentsview-0.2.1/patentsview/build |only patentsview-0.2.1/patentsview/inst |only patentsview-0.2.1/patentsview/vignettes |only patentsview-0.2.2/patentsview/DESCRIPTION | 9 +++--- patentsview-0.2.2/patentsview/LICENSE | 2 - patentsview-0.2.2/patentsview/MD5 | 29 ++++++---------------- patentsview-0.2.2/patentsview/R/cast-pv-data.R | 2 - patentsview-0.2.2/patentsview/R/process-resp.R | 5 --- patentsview-0.2.2/patentsview/R/search-pv.R | 31 +++++++----------------- patentsview-0.2.2/patentsview/R/sysdata.rda |binary patentsview-0.2.2/patentsview/README.md | 13 +++++----- patentsview-0.2.2/patentsview/data/fieldsdf.rda |binary 12 files changed, 32 insertions(+), 59 deletions(-)
Title: Multilevel Model Intraclass Correlation for Slope Heterogeneity
Description: A function and vignettes for computing an intraclass correlation
described in Aguinis & Culpepper (2015) <doi:10.1177/1094428114563618>.
This package quantifies the share of variance in a dependent variable that
is attributed to group heterogeneity in slopes.
Author: Steven Andrew Culpepper [aut, cph, cre]
(<https://orcid.org/0000-0003-4226-6176>),
Herman Aguinis [aut, cph] (<https://orcid.org/0000-0002-3485-9484>)
Maintainer: Steven Andrew Culpepper <sculpepp@illinois.edu>
Diff between iccbeta versions 1.1.0 dated 2017-08-22 and 1.2.0 dated 2019-01-28
DESCRIPTION | 38 ++++--- MD5 | 35 +++--- NAMESPACE | 19 ++- NEWS.md | 63 ++++++++---- R/RcppExports.R | 143 +++++++++------------------- R/datasets-docs.R | 232 ++++++++++++++++++++++----------------------- R/iccbeta-internal.R | 140 +++++++++++++-------------- R/iccbeta.R |only README.md | 84 ++++++++++++++-- inst/CITATION | 42 +++++--- man/Hofmann.Rd | 152 ++++++++++++++--------------- man/icc_beta.Rd | 250 +++++++++++++++++++++++++++---------------------- man/iccbeta-package.Rd | 196 +++++++++++++++++++------------------- man/simICCdata.Rd | 140 +++++++++++++-------------- src/Makevars | 9 + src/Makevars.win | 8 + src/RcppExports.cpp | 10 - src/icc_beta.cpp | 164 +++++++++++--------------------- tests |only 19 files changed, 906 insertions(+), 819 deletions(-)
Title: Data and Functions Used in Linear Models and Regression with R:
An Integrated Approach
Description: Data files and a few functions used in the book
'Linear Models and Regression with R: An Integrated Approach'
by Debasis Sengupta and Sreenivas Rao Jammalamadaka (2019).
Author: Debasis Sengupta <shairiksengupta@gmail.com>, S. Rao Jammalamadaka <rao@gmail.com>,
Jinwen Qiu <qjwsnow_ctw@hotmail.com>
Maintainer: Jinwen Qiu <qjwsnow_ctw@hotmail.com>
Diff between lmreg versions 1.0 dated 2018-12-16 and 1.1 dated 2019-01-28
lmreg-1.0/lmreg/R/proj.R |only lmreg-1.0/lmreg/man/proj.Rd |only lmreg-1.1/lmreg/DESCRIPTION | 8 ++++---- lmreg-1.1/lmreg/MD5 | 34 ++++++++++++++++++++++++---------- lmreg-1.1/lmreg/NAMESPACE | 12 +++++++++--- lmreg-1.1/lmreg/R/cisv.R |only lmreg-1.1/lmreg/R/compbasis.R | 2 +- lmreg-1.1/lmreg/R/ganova.R | 22 ++++++++++------------ lmreg-1.1/lmreg/R/hypsplit.R | 2 +- lmreg-1.1/lmreg/R/hyptest.R |only lmreg-1.1/lmreg/R/ivif.R |only lmreg-1.1/lmreg/R/projector.R |only lmreg-1.1/lmreg/R/supplbasis.R | 2 +- lmreg-1.1/lmreg/R/yX.R |only lmreg-1.1/lmreg/R/yXm.R |only lmreg-1.1/lmreg/R/yXn.R |only lmreg-1.1/lmreg/data/anscombeplus.rda |only lmreg-1.1/lmreg/man/anscombeplus.Rd |only lmreg-1.1/lmreg/man/cisv.Rd |only lmreg-1.1/lmreg/man/ganova.Rd | 13 ++++++++----- lmreg-1.1/lmreg/man/hyptest.Rd |only lmreg-1.1/lmreg/man/is.included.Rd | 4 ++-- lmreg-1.1/lmreg/man/ivif.Rd |only lmreg-1.1/lmreg/man/projector.Rd |only lmreg-1.1/lmreg/man/yX.Rd |only lmreg-1.1/lmreg/man/yXm.Rd |only lmreg-1.1/lmreg/man/yXn.Rd |only 27 files changed, 60 insertions(+), 39 deletions(-)
Title: Bayesian Hierarchical Regression on Clearance Rates in the
Presence of Lag and Tail Phases
Description: An implementation of the Bayesian Clearance Estimator (Fogarty et al. (2015) <doi:10.1111/biom.12307>).
It takes serial measurements of a response on an individual (e.g., parasite load
after treatment) that is decaying over time and performs Bayesian hierarchical
regression of the clearance rates on the given covariates. This package provides
tools to calculate WWARN PCE (WorldWide Antimalarial Resistance Network's
Parasite Clearance Estimator) estimates of the clearance rates as well. A tutorial appeared in
Sharifi-Malvajerdi et al. (2019) <doi: 10.1186/s12936-018-2631-8>.
Author: Colin B. Fogarty [cre] <cfogarty@mit.edu>,
Saeed Sharifi-Malvajerdi [aut] <saeedsh@wharton.upenn.edu>,
Feiyu Zhu [aut] <feiyuzhu@sas.upenn.edu>
Maintainer: Colin B. Fogarty <cfogarty@mit.edu>
Diff between bhrcr versions 1.0.2 dated 2018-11-12 and 1.0.3 dated 2019-01-28
DESCRIPTION | 13 MD5 | 38 - NAMESPACE | 38 - build/vignette.rds |binary inst/CITATION | 25 - inst/doc/bhrcr-tutorial.R | 224 +++++----- inst/doc/bhrcr-tutorial.Rmd | 10 inst/doc/bhrcr-tutorial.html | 844 ++++++++++++++++++++++++++--------------- man/bhrcr-package.Rd | 58 +- man/calculatePCE.Rd | 112 ++--- man/clearanceEstimatorBayes.Rd | 259 ++++++------ man/diagnostics.Rd | 98 ++-- man/plot.bhrcr.Rd | 109 ++--- man/posterior.Rd | 28 - man/print.bhrcr.Rd | 94 ++-- man/pursat.Rd | 44 +- man/pursat_covariates.Rd | 48 +- man/summary.bhrcr.Rd | 96 ++-- vignettes/bhrcr-tutorial.Rmd | 10 vignettes/references.bib | 309 ++++++++------- 20 files changed, 1363 insertions(+), 1094 deletions(-)
Title: Crowd Sourced System Benchmarks
Description: Benchmark your CPU and compare against other CPUs. Also provides
functions for obtaining system specifications, such as
RAM, CPU type, and R version.
Author: Colin Gillespie [aut, cre]
Maintainer: Colin Gillespie <csgillespie@gmail.com>
Diff between benchmarkme versions 0.6.0 dated 2017-08-30 and 1.0.0 dated 2019-01-28
benchmarkme-0.6.0/benchmarkme/man/get_datatable.Rd |only benchmarkme-1.0.0/benchmarkme/DESCRIPTION | 17 benchmarkme-1.0.0/benchmarkme/MD5 | 93 +- benchmarkme-1.0.0/benchmarkme/NAMESPACE | 14 benchmarkme-1.0.0/benchmarkme/NEWS.md | 6 benchmarkme-1.0.0/benchmarkme/R/benchmark_io.R | 143 ++- benchmarkme-1.0.0/benchmarkme/R/benchmark_matrix_calculations.R | 62 - benchmarkme-1.0.0/benchmarkme/R/benchmark_matrix_functions.R | 18 benchmarkme-1.0.0/benchmarkme/R/benchmark_parallel.R | 23 benchmarkme-1.0.0/benchmarkme/R/benchmark_programming.R | 108 +- benchmarkme-1.0.0/benchmarkme/R/benchmark_std.R | 11 benchmarkme-1.0.0/benchmarkme/R/benchmarks.R | 39 - benchmarkme-1.0.0/benchmarkme/R/clean_ram_output.R | 4 benchmarkme-1.0.0/benchmarkme/R/datatable.R | 98 -- benchmarkme-1.0.0/benchmarkme/R/get_byte_compiler.R | 4 benchmarkme-1.0.0/benchmarkme/R/get_linear_algebra.R | 27 benchmarkme-1.0.0/benchmarkme/R/get_ram.R | 19 benchmarkme-1.0.0/benchmarkme/R/globalVariables.R |only benchmarkme-1.0.0/benchmarkme/R/plot_results.R | 101 +- benchmarkme-1.0.0/benchmarkme/R/rank_results.R | 62 - benchmarkme-1.0.0/benchmarkme/R/timing_mean.R | 4 benchmarkme-1.0.0/benchmarkme/R/upload_results.R | 5 benchmarkme-1.0.0/benchmarkme/R/zzz.r | 8 benchmarkme-1.0.0/benchmarkme/README.md |only benchmarkme-1.0.0/benchmarkme/build/vignette.rds |binary benchmarkme-1.0.0/benchmarkme/data/sample_results.RData |binary benchmarkme-1.0.0/benchmarkme/inst/doc/a_introduction.R | 11 benchmarkme-1.0.0/benchmarkme/inst/doc/a_introduction.Rmd | 70 + benchmarkme-1.0.0/benchmarkme/inst/doc/a_introduction.html | 382 ++++++++-- benchmarkme-1.0.0/benchmarkme/man/benchmark_io.Rd | 21 benchmarkme-1.0.0/benchmarkme/man/benchmark_std.Rd | 5 benchmarkme-1.0.0/benchmarkme/man/bm_matrix_cal_manip.Rd | 5 benchmarkme-1.0.0/benchmarkme/man/bm_matrix_fun_fft.Rd | 5 benchmarkme-1.0.0/benchmarkme/man/bm_parallel.Rd | 9 benchmarkme-1.0.0/benchmarkme/man/bm_prog_fib.Rd | 5 benchmarkme-1.0.0/benchmarkme/man/get_byte_compiler.Rd | 6 benchmarkme-1.0.0/benchmarkme/man/get_linear_algebra.Rd | 12 benchmarkme-1.0.0/benchmarkme/man/get_sys_details.Rd | 7 benchmarkme-1.0.0/benchmarkme/man/plot.ben_results.Rd | 9 benchmarkme-1.0.0/benchmarkme/man/rank_results.Rd | 12 benchmarkme-1.0.0/benchmarkme/man/reexports.Rd | 7 benchmarkme-1.0.0/benchmarkme/tests/testthat.R | 2 benchmarkme-1.0.0/benchmarkme/tests/testthat/test-benchmark_io.R | 6 benchmarkme-1.0.0/benchmarkme/tests/testthat/test-bm_parallel.R | 6 benchmarkme-1.0.0/benchmarkme/tests/testthat/test-datatable.R | 22 benchmarkme-1.0.0/benchmarkme/tests/testthat/test-ram.R | 4 benchmarkme-1.0.0/benchmarkme/tests/testthat/test-ranking.R | 1 benchmarkme-1.0.0/benchmarkme/tests/testthat/test-timings.R | 4 benchmarkme-1.0.0/benchmarkme/vignettes/a_introduction.Rmd | 70 + 49 files changed, 902 insertions(+), 645 deletions(-)
Title: Learn Text 'Embeddings' with 'Starspace'
Description: Wraps the 'StarSpace' library <https://github.com/facebookresearch/StarSpace>
allowing users to calculate word, sentence, article, document, webpage, link and entity 'embeddings'.
By using the 'embeddings', you can perform text based multi-label classification,
find similarities between texts and categories, do collaborative-filtering based recommendation
as well as content-based recommendation, find out relations between entities, calculate
graph 'embeddings' as well as perform semi-supervised learning and multi-task learning on plain text.
The techniques are explained in detail in the paper: 'StarSpace: Embed All The Things!' by Wu et al. (2017), available at <arXiv:1709.03856>.
Author: Jan Wijffels [aut, cre, cph] (R wrapper),
BNOSAC [cph] (R wrapper),
Facebook, Inc. [cph] (Starspace (BSD licensed))
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between ruimtehol versions 0.1.1 dated 2019-01-08 and 0.1.2 dated 2019-01-28
DESCRIPTION | 6 +++--- MD5 | 7 ++++--- NEWS.md |only inst/doc/ground-control-to-ruimtehol.pdf |binary src/Makevars | 4 +--- 5 files changed, 8 insertions(+), 9 deletions(-)
Title: Simulating Neutral Landscape Models
Description: Provides neutral landscape models (<doi:10.1007/BF02275262>,
<http://sci-hub.tw/10.1007/bf02275262>).
Neutral landscape models range from "hard"
neutral models (completely random distributed), to "soft" neutral models
(definable spatial characteristics) and generate landscape patterns that are
independent of ecological processes.
Thus, these patterns can be used as null models in landscape ecology. 'nlmr'
combines a large number of algorithms from other published software for
simulating neutral landscapes. The simulation results are obtained in a
geospatial data format (raster* objects from the 'raster' package) and can,
therefore, be used in any sort of raster data operation that is performed
with standard observation data.
Author: Marco Sciaini [aut, cre] (<https://orcid.org/0000-0002-3042-5435>),
Matthias Fritsch [aut],
Craig Simpkins [aut] (<https://orcid.org/0000-0003-3212-1379>),
Cédric Scherer [aut] (<https://orcid.org/0000-0003-0465-2543>),
Sebastian Hanß [aut] (<https://orcid.org/0000-0002-3990-4897>),
Laura Graham [rev] (Laura reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/188),
Jeffrey Hollister [rev] (Jeffrey reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/188)
Maintainer: Marco Sciaini <sciaini.marco@gmail.com>
Diff between NLMR versions 0.4 dated 2018-11-16 and 0.4.1 dated 2019-01-28
DESCRIPTION | 8 +-- MD5 | 82 ++++++++++++++++++------------------ NAMESPACE | 2 NEWS.md | 6 ++ R/NLMR.R | 2 R/nlm_curds.R | 4 - R/nlm_distancegradient.R | 2 R/nlm_edgegradient.R | 2 R/nlm_fbm.R | 2 R/nlm_gaussianfield.R | 2 R/nlm_mosaicfield.R | 2 R/nlm_mosaicgibbs.R | 2 R/nlm_mosaictess.R | 2 R/nlm_mpd.R | 4 - R/nlm_neigh.R | 2 R/nlm_percolation.R | 2 R/nlm_planargradient.R | 2 R/nlm_random.R | 2 R/nlm_randomcluster.R | 2 R/nlm_randomrectangularcluster.R | 2 R/util_rescale.R | 40 ++++++++--------- inst/CITATION | 9 --- inst/doc/getstarted.R | 2 inst/doc/getstarted.Rmd | 4 - inst/doc/getstarted.html | 49 +++++++++++++-------- man/NLMR-package.Rd | 2 man/nlm_curds.Rd | 4 - man/nlm_distancegradient.Rd | 2 man/nlm_edgegradient.Rd | 2 man/nlm_fbm.Rd | 2 man/nlm_gaussianfield.Rd | 2 man/nlm_mosaicfield.Rd | 2 man/nlm_mosaicgibbs.Rd | 2 man/nlm_mosaictess.Rd | 2 man/nlm_mpd.Rd | 2 man/nlm_neigh.Rd | 2 man/nlm_percolation.Rd | 2 man/nlm_planargradient.Rd | 2 man/nlm_random.Rd | 2 man/nlm_randomcluster.Rd | 2 man/nlm_randomrectangularcluster.Rd | 2 vignettes/getstarted.Rmd | 4 - 42 files changed, 145 insertions(+), 131 deletions(-)
Title: Immunoglobulin Somatic Hypermutation Analysis
Description: Provides a computational framework for analyzing mutations in
immunoglobulin (Ig) sequences. Includes methods for Bayesian estimation of
antigen-driven selection pressure, mutational load quantification, building of
somatic hypermutation (SHM) models, and model-dependent distance calculations.
Also includes empirically derived models of SHM for both mice and humans.
Citations:
Gupta and Vander Heiden, et al (2015) <doi:10.1093/bioinformatics/btv359>,
Yaari, et al (2012) <doi:10.1093/nar/gks457>,
Yaari, et al (2013) <doi:10.3389/fimmu.2013.00358>,
Cui, et al (2016) <doi:10.4049/jimmunol.1502263>.
Author: Mohamed Uduman [aut],
Gur Yaari [aut],
Namita Gupta [aut],
Jason Vander Heiden [aut, cre],
Ang Cui [ctb],
Susanna Marquez [ctb],
Julian Zhou [ctb],
Nima Nouri [ctb],
Steven Kleinstein [aut, cph]
Maintainer: Jason Vander Heiden <jason.vanderheiden@yale.edu>
Diff between shazam versions 0.1.10 dated 2018-09-20 and 0.1.11 dated 2019-01-28
DESCRIPTION | 10 +++++----- MD5 | 34 +++++++++++++++++----------------- NEWS.md | 11 ++++++++++- R/DistToNearest.R | 22 +++++++++++++++++----- R/RegionDefinitions.R | 24 ++++++++++++------------ R/Shmulate.R | 25 +++++++++++++++++++++++-- R/TargetingModels.R | 18 +++++++++--------- build/vignette.rds |binary inst/doc/Baseline-Vignette.pdf |binary inst/doc/DistToNearest-Vignette.R | 27 +++++++++++++++++++++++++++ inst/doc/DistToNearest-Vignette.Rmd | 34 ++++++++++++++++++++++++++++++++++ inst/doc/DistToNearest-Vignette.pdf |binary inst/doc/Mutation-Vignette.pdf |binary inst/doc/Shmulate-Vignette.pdf |binary inst/doc/Targeting-Vignette.pdf |binary man/distToNearest.Rd | 22 +++++++++++++++++----- man/writeTargetingDistance.Rd | 2 +- vignettes/DistToNearest-Vignette.Rmd | 34 ++++++++++++++++++++++++++++++++++ 18 files changed, 206 insertions(+), 57 deletions(-)
Title: Exploratory Data Analysis and Manipulation of Multi-Label Data
Sets
Description: Exploratory data analysis and manipulation functions for multi-
label data sets along with an interactive Shiny application to ease their use.
Author: David Charte [cre] (<https://orcid.org/0000-0002-4830-9512>),
Francisco Charte [aut] (<https://orcid.org/0000-0002-3083-8942>),
Antonio J. Rivera [aut]
Maintainer: David Charte <fdavidcl@ugr.es>
Diff between mldr versions 0.4.1 dated 2019-01-16 and 0.4.2 dated 2019-01-28
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/evmetrics_av.R | 11 ++++++++--- inst/doc/mldr.pdf |binary man/evmetrics-av.Rd | 6 +++--- 5 files changed, 19 insertions(+), 14 deletions(-)
Title: Seasonal Adjustment of Daily Time Series
Description: Seasonal- and calendar adjustment of time series with daily frequency using the DSA approach developed by Ollech, Daniel (2018): Seasonal adjustment of daily time series. Bundesbank Discussion Paper 41/2018.
Author: Daniel Ollech [aut, cre]
Maintainer: Daniel Ollech <daniel.ollech@bundesbank.de>
Diff between dsa versions 0.60.32 dated 2018-10-29 and 0.61.7 dated 2019-01-28
DESCRIPTION | 8 +++++--- MD5 | 24 ++++++++++++++---------- NEWS | 28 +++++++++++++++++++++++++++- R/Descaler.R | 2 +- R/drop31.R | 10 ++++++++-- R/dsa.R | 13 ++++++++----- R/fill_up.R | 9 +++++---- R/output.R | 8 ++++---- build |only inst |only man/Descaler.Rd | 2 +- man/dsa.Rd | 10 +++++----- 12 files changed, 78 insertions(+), 36 deletions(-)
Title: S<e9>ries Temporelles Avec R
Description: Functions, data sets and exercises solutions for the book 'Séries Temporelles Avec R' (Yves Aragon, edp sciences, 2016). For all chapters, a vignette is available with some additional material and exercises solutions.
Author: Yves Aragon
Maintainer: Thibault Laurent <Thibault.Laurent@univ-tlse1.fr>
Diff between caschrono versions 2.0 dated 2016-08-16 and 2.1 dated 2019-01-28
DESCRIPTION | 10 MD5 | 84 +- build/vignette.rds |binary inst/doc/Anx1.R | 178 +++--- inst/doc/Anx1.Rnw | 541 +++++++++--------- inst/doc/Anx1.pdf |binary inst/doc/Anx10.R | 334 +++++------ inst/doc/Anx10.Rnw | 671 +++++++++++----------- inst/doc/Anx10.pdf |binary inst/doc/Anx12.R | 784 +++++++++++++------------- inst/doc/Anx12.Rnw | 1523 ++++++++++++++++++++++++++-------------------------- inst/doc/Anx12.pdf |binary inst/doc/Anx2.R | 279 ++++----- inst/doc/Anx2.Rnw | 794 +++++++++++++-------------- inst/doc/Anx2.pdf |binary inst/doc/Anx3.R | 258 ++++---- inst/doc/Anx3.Rnw | 1203 ++++++++++++++++++++--------------------- inst/doc/Anx3.pdf |binary inst/doc/Anx4.R | 833 ++++++++++++++-------------- inst/doc/Anx4.Rnw | 1496 +++++++++++++++++++++++++-------------------------- inst/doc/Anx4.pdf |binary inst/doc/Anx5.R | 634 +++++++++++---------- inst/doc/Anx5.Rnw | 1191 ++++++++++++++++++++-------------------- inst/doc/Anx5.pdf |binary inst/doc/Anx6.R | 279 ++++----- inst/doc/Anx6.Rnw | 692 +++++++++++------------ inst/doc/Anx6.pdf |binary inst/doc/Anx7.R | 257 ++++---- inst/doc/Anx7.Rnw | 668 +++++++++++----------- inst/doc/Anx7.pdf |binary inst/doc/Anx9.R | 226 +++---- inst/doc/Anx9.Rnw | 483 ++++++++-------- inst/doc/Anx9.pdf |binary vignettes/Anx1.Rnw | 541 +++++++++--------- vignettes/Anx10.Rnw | 671 +++++++++++----------- vignettes/Anx12.Rnw | 1523 ++++++++++++++++++++++++++-------------------------- vignettes/Anx2.Rnw | 794 +++++++++++++-------------- vignettes/Anx3.Rnw | 1203 ++++++++++++++++++++--------------------- vignettes/Anx4.Rnw | 1496 +++++++++++++++++++++++++-------------------------- vignettes/Anx5.Rnw | 1191 ++++++++++++++++++++-------------------- vignettes/Anx6.Rnw | 692 +++++++++++------------ vignettes/Anx7.Rnw | 668 +++++++++++----------- vignettes/Anx9.Rnw | 483 ++++++++-------- 43 files changed, 11435 insertions(+), 11245 deletions(-)
Title: Loading Google Adwords Data into R
Description: Aims at loading Google Adwords data into R. Adwords is an online
advertising service that enables advertisers to display advertising copy to web
users (see <https://developers.google.com/adwords/> for more information).
Therefore the package implements three main features. First, the package
provides an authentication process for R with the Google Adwords API (see
<https://developers.google.com/adwords/api/> for more information) via OAUTH2.
Second, the package offers an interface to apply the Adwords query language in
R and query the Adwords API with ad-hoc reports. Third, the received data are
transformed into suitable data formats for further data processing and data
analysis.
Author: Johannes Burkhardt <johannes.burkhardt@gmail.com>, Matthias Bannert
<matthias.bannert@gmail.com>
Maintainer: Johannes Burkhardt <johannes.burkhardt@gmail.com>
Diff between RAdwords versions 0.1.17 dated 2018-06-11 and 0.1.18 dated 2019-01-28
RAdwords-0.1.17/RAdwords/inst/extdata/api201710 |only RAdwords-0.1.18/RAdwords/DESCRIPTION | 7 - RAdwords-0.1.18/RAdwords/LICENSE | 2 RAdwords-0.1.18/RAdwords/MD5 | 129 ++++++++++++------------ RAdwords-0.1.18/RAdwords/NAMESPACE | 2 RAdwords-0.1.18/RAdwords/NEWS | 8 + RAdwords-0.1.18/RAdwords/R/changeNames.R | 3 RAdwords-0.1.18/RAdwords/R/getData.R | 4 RAdwords-0.1.18/RAdwords/R/loadToken.R | 12 +- RAdwords-0.1.18/RAdwords/R/metrics.R | 8 - RAdwords-0.1.18/RAdwords/R/reports.R | 9 - RAdwords-0.1.18/RAdwords/R/statement.R | 39 +++++-- RAdwords-0.1.18/RAdwords/R/transformData.R | 8 - RAdwords-0.1.18/RAdwords/README.md | 2 RAdwords-0.1.18/RAdwords/inst/extdata/api201809 |only RAdwords-0.1.18/RAdwords/man/getData.Rd | 4 RAdwords-0.1.18/RAdwords/man/metrics.Rd | 4 RAdwords-0.1.18/RAdwords/man/reports.Rd | 4 RAdwords-0.1.18/RAdwords/man/statement.Rd | 7 - RAdwords-0.1.18/RAdwords/man/transformData.Rd | 4 RAdwords-0.1.18/RAdwords/tests |only 21 files changed, 154 insertions(+), 102 deletions(-)
Title: Music Chords Extraction
Description: Extracts music chords from the 'CifraClub' website <https://www.cifraclub.com.br/>.
The package also has functions for cleaning the extracted data and
feature extraction.
Author: Bruna Wundervald
Maintainer: Bruna Wundervald <brunadaviesw@gmail.com>
Diff between chorrrds versions 0.1.7 dated 2018-08-11 and 0.1.8 dated 2019-01-28
chorrrds-0.1.7/chorrrds/data/ad_calcanhotto.rda |only chorrrds-0.1.7/chorrrds/data/adoniran_barbosa.rda |only chorrrds-0.1.7/chorrrds/data/alceu_valenca.rda |only chorrrds-0.1.7/chorrrds/data/alcione.rda |only chorrrds-0.1.7/chorrrds/data/almir_guineto.rda |only chorrrds-0.1.7/chorrrds/data/ana_carolina.rda |only chorrrds-0.1.7/chorrrds/data/arlindo_cruz.rda |only chorrrds-0.1.7/chorrrds/data/belchior.rda |only chorrrds-0.1.7/chorrrds/data/benito_paula.rda |only chorrrds-0.1.7/chorrrds/data/beth_carvalho.rda |only chorrrds-0.1.7/chorrrds/data/bezerra_silva.rda |only chorrrds-0.1.7/chorrrds/data/bruno_marrone.rda |only chorrrds-0.1.7/chorrrds/data/caetano.rda |only chorrrds-0.1.7/chorrrds/data/cartola.rda |only chorrrds-0.1.7/chorrrds/data/cassia_eller.rda |only chorrrds-0.1.7/chorrrds/data/cazuza.rda |only chorrrds-0.1.7/chorrrds/data/charlie_brown_jr.rda |only chorrrds-0.1.7/chorrrds/data/chico_buarque.rda |only chorrrds-0.1.7/chorrrds/data/chitaozinho_xororo.rda |only chorrrds-0.1.7/chorrrds/data/clara_nunes.rda |only chorrrds-0.1.7/chorrrds/data/cleber_cauan.rda |only chorrrds-0.1.7/chorrrds/data/cristiano_araujo.rda |only chorrrds-0.1.7/chorrrds/data/daniel.rda |only chorrrds-0.1.7/chorrrds/data/datalist |only chorrrds-0.1.7/chorrrds/data/demonios_garoa.rda |only chorrrds-0.1.7/chorrrds/data/detonautas.rda |only chorrrds-0.1.7/chorrrds/data/diogo_nogueira.rda |only chorrrds-0.1.7/chorrrds/data/djavan.rda |only chorrrds-0.1.7/chorrrds/data/dorival_caymmi.rda |only chorrrds-0.1.7/chorrrds/data/dudu_nobre.rda |only chorrrds-0.1.7/chorrrds/data/edson_hudson.rda |only chorrrds-0.1.7/chorrrds/data/eduardo_costa.rda |only chorrrds-0.1.7/chorrrds/data/elis_regina.rda |only chorrrds-0.1.7/chorrrds/data/eng_hawaii.rda |only chorrrds-0.1.7/chorrrds/data/fagner.rda |only chorrrds-0.1.7/chorrrds/data/felipe_araujo.rda |only chorrrds-0.1.7/chorrrds/data/fernando_sorocaba.rda |only chorrrds-0.1.7/chorrrds/data/fundo_quintal.rda |only chorrrds-0.1.7/chorrrds/data/geraldo_azevedo.rda |only chorrrds-0.1.7/chorrrds/data/gilberto_gil.rda |only chorrrds-0.1.7/chorrrds/data/gusttavo_lima.rda |only chorrrds-0.1.7/chorrrds/data/henrique_juliano.rda |only chorrrds-0.1.7/chorrrds/data/ivone_lara.rda |only chorrrds-0.1.7/chorrrds/data/jads_jadson.rda |only chorrrds-0.1.7/chorrrds/data/jair_rodrigues.rda |only chorrrds-0.1.7/chorrrds/data/joao_nogueira.rda |only chorrrds-0.1.7/chorrrds/data/jorge_aragao.rda |only chorrrds-0.1.7/chorrrds/data/jorge_ben_jor.rda |only chorrrds-0.1.7/chorrrds/data/jorge_mateus.rda |only chorrrds-0.1.7/chorrrds/data/jorge_vercillo.rda |only chorrrds-0.1.7/chorrrds/data/jota_quest.rda |only chorrrds-0.1.7/chorrrds/data/katinguele.rda |only chorrrds-0.1.7/chorrrds/data/kid_abelha.rda |only chorrrds-0.1.7/chorrrds/data/leandro_leonardo.rda |only chorrrds-0.1.7/chorrrds/data/leci_brandao.rda |only chorrrds-0.1.7/chorrrds/data/legiao_urbana.rda |only chorrrds-0.1.7/chorrrds/data/leoni.rda |only chorrrds-0.1.7/chorrrds/data/luan_santana.rda |only chorrrds-0.1.7/chorrrds/data/lucas_lucco.rda |only chorrrds-0.1.7/chorrrds/data/luiz_gonzaga.rda |only chorrrds-0.1.7/chorrrds/data/lupcinio_rodrigues.rda |only chorrrds-0.1.7/chorrrds/data/maiara_maraisa.rda |only chorrrds-0.1.7/chorrrds/data/mamonas.rda |only chorrrds-0.1.7/chorrrds/data/marcos_belutti.rda |only chorrrds-0.1.7/chorrrds/data/maria_gadu.rda |only chorrrds-0.1.7/chorrrds/data/marilia_mendonca.rda |only chorrrds-0.1.7/chorrrds/data/marisa_monte.rda |only chorrrds-0.1.7/chorrrds/data/martinho_vila.rda |only chorrrds-0.1.7/chorrrds/data/matheus_kauan.rda |only chorrrds-0.1.7/chorrrds/data/mil_ze_rico.rda |only chorrrds-0.1.7/chorrrds/data/milton.rda |only chorrrds-0.1.7/chorrrds/data/mumuzinho.rda |only chorrrds-0.1.7/chorrrds/data/nando_reis.rda |only chorrrds-0.1.7/chorrrds/data/nelson_cavaquinho.rda |only chorrrds-0.1.7/chorrrds/data/noel_rosa.rda |only chorrrds-0.1.7/chorrrds/data/nx_zero.rda |only chorrrds-0.1.7/chorrrds/data/o_rappa.rda |only chorrrds-0.1.7/chorrrds/data/originais_samba.rda |only chorrrds-0.1.7/chorrrds/data/paralamas.rda |only chorrrds-0.1.7/chorrrds/data/paula_fernandes.rda |only chorrrds-0.1.7/chorrrds/data/paulinho_viola.rda |only chorrrds-0.1.7/chorrrds/data/pitty.rda |only chorrrds-0.1.7/chorrrds/data/pixinguinha.rda |only chorrrds-0.1.7/chorrrds/data/raul_seixas.rda |only chorrrds-0.1.7/chorrrds/data/reinaldo.rda |only chorrrds-0.1.7/chorrrds/data/rita_lee.rda |only chorrrds-0.1.7/chorrrds/data/roberta_campos.rda |only chorrrds-0.1.7/chorrrds/data/sambo.rda |only chorrrds-0.1.7/chorrrds/data/sergio_reis.rda |only chorrrds-0.1.7/chorrrds/data/seu_jorge.rda |only chorrrds-0.1.7/chorrrds/data/simone.rda |only chorrrds-0.1.7/chorrrds/data/simone_simaria.rda |only chorrrds-0.1.7/chorrrds/data/skank.rda |only chorrrds-0.1.7/chorrrds/data/supercombo.rda |only chorrrds-0.1.7/chorrrds/data/thiago_brava.rda |only chorrrds-0.1.7/chorrrds/data/tiao_carreiro_pardinho.rda |only chorrrds-0.1.7/chorrrds/data/tim_maia.rda |only chorrrds-0.1.7/chorrrds/data/titas.rda |only chorrrds-0.1.7/chorrrds/data/toquinho.rda |only chorrrds-0.1.7/chorrrds/data/tribalistas.rda |only chorrrds-0.1.7/chorrrds/data/trio_parada_dura.rda |only chorrrds-0.1.7/chorrrds/data/vanessa_da_mata.rda |only chorrrds-0.1.7/chorrrds/data/victor_leo.rda |only chorrrds-0.1.7/chorrrds/data/ze_neto_cristiano.rda |only chorrrds-0.1.7/chorrrds/data/ze_ramalho.rda |only chorrrds-0.1.7/chorrrds/data/zeca_baleiro.rda |only chorrrds-0.1.7/chorrrds/data/zeze_luciano.rda |only chorrrds-0.1.7/chorrrds/man/ad_calcanhotto.Rd |only chorrrds-0.1.7/chorrrds/man/adoniran_barbosa.Rd |only chorrrds-0.1.7/chorrrds/man/alceu_valenca.Rd |only chorrrds-0.1.7/chorrrds/man/alcione.Rd |only chorrrds-0.1.7/chorrrds/man/almir_guineto.Rd |only chorrrds-0.1.7/chorrrds/man/ana_carolina.Rd |only chorrrds-0.1.7/chorrrds/man/arlindo_cruz.Rd |only chorrrds-0.1.7/chorrrds/man/belchior.Rd |only chorrrds-0.1.7/chorrrds/man/benito_paula.Rd |only chorrrds-0.1.7/chorrrds/man/beth_carvalho.Rd |only chorrrds-0.1.7/chorrrds/man/bezerra_silva.Rd |only chorrrds-0.1.7/chorrrds/man/bruno_marrone.Rd |only chorrrds-0.1.7/chorrrds/man/caetano.Rd |only chorrrds-0.1.7/chorrrds/man/cartola.Rd |only chorrrds-0.1.7/chorrrds/man/cassia_eller.Rd |only chorrrds-0.1.7/chorrrds/man/cazuza.Rd |only chorrrds-0.1.7/chorrrds/man/charlie_brown_jr.Rd |only chorrrds-0.1.7/chorrrds/man/chico_buarque.Rd |only chorrrds-0.1.7/chorrrds/man/chitaozinho_xororo.Rd |only chorrrds-0.1.7/chorrrds/man/clara_nunes.Rd |only chorrrds-0.1.7/chorrrds/man/cleber_cauan.Rd |only chorrrds-0.1.7/chorrrds/man/cristiano_araujo.Rd |only chorrrds-0.1.7/chorrrds/man/daniel.Rd |only chorrrds-0.1.7/chorrrds/man/demonios_garoa.Rd |only chorrrds-0.1.7/chorrrds/man/detonautas.Rd |only chorrrds-0.1.7/chorrrds/man/diogo_nogueira.Rd |only chorrrds-0.1.7/chorrrds/man/djavan.Rd |only chorrrds-0.1.7/chorrrds/man/dorival_caymmi.Rd |only chorrrds-0.1.7/chorrrds/man/dudu_nobre.Rd |only chorrrds-0.1.7/chorrrds/man/edson_hudson.Rd |only chorrrds-0.1.7/chorrrds/man/eduardo_costa.Rd |only chorrrds-0.1.7/chorrrds/man/elis_regina.Rd |only chorrrds-0.1.7/chorrrds/man/eng_hawaii.Rd |only chorrrds-0.1.7/chorrrds/man/fagner.Rd |only chorrrds-0.1.7/chorrrds/man/felipe_araujo.Rd |only chorrrds-0.1.7/chorrrds/man/fernando_sorocaba.Rd |only chorrrds-0.1.7/chorrrds/man/fundo_quintal.Rd |only chorrrds-0.1.7/chorrrds/man/geraldo_azevedo.Rd |only chorrrds-0.1.7/chorrrds/man/gilberto_gil.Rd |only chorrrds-0.1.7/chorrrds/man/gusttavo_lima.Rd |only chorrrds-0.1.7/chorrrds/man/henrique_juliano.Rd |only chorrrds-0.1.7/chorrrds/man/ivone_lara.Rd |only chorrrds-0.1.7/chorrrds/man/jads_jadson.Rd |only chorrrds-0.1.7/chorrrds/man/jair_rodrigues.Rd |only chorrrds-0.1.7/chorrrds/man/joao_nogueira.Rd |only chorrrds-0.1.7/chorrrds/man/jorge_aragao.Rd |only 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chorrrds-0.1.8/chorrrds/DESCRIPTION | 16 chorrrds-0.1.8/chorrrds/MD5 | 225 - chorrrds-0.1.8/chorrrds/R/clean.R | 9 chorrrds-0.1.8/chorrrds/R/data.R | 1805 ---------------- chorrrds-0.1.8/chorrrds/R/get_chords.R | 81 chorrrds-0.1.8/chorrrds/R/utils.R | 4 chorrrds-0.1.8/chorrrds/man/get_chords.Rd | 2 220 files changed, 66 insertions(+), 2076 deletions(-)
Title: Fitting Separable Nonlinear Models in Spectroscopy and
Microscopy
Description: A problem-solving environment (PSE) for fitting
separable nonlinear models to measurements arising in physics
and chemistry experiments; has been extensively applied to
time-resolved spectroscopy and FLIM-FRET data.
Author: Katharine M. Mullen, Joris J. Snellenburg, Sergey P. Laptenok, David Nicolaides, Ivo H.M. van Stokkum
Maintainer: ORPHANED
Diff between TIMP versions 1.13.0 dated 2015-10-19 and 1.13.1 dated 2019-01-28
DESCRIPTION | 11 +++++++---- MD5 | 5 +++-- R/init.dat.R | 6 ++++-- src/init.c |only 4 files changed, 14 insertions(+), 8 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-01-27 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-05-18 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-02 1.2.2
2014-08-05 1.1
2013-12-27 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-09-21 0.1.6
2016-07-24 0.1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-09 2.2
2016-10-12 2.1
2007-10-22 0.2
2004-05-26 0.1
Title: Methods for Evaluating Principal Surrogates of Treatment
Response
Description: Contains the core methods for the evaluation of principal
surrogates in a single clinical trial. Provides a flexible interface for
defining models for the risk given treatment and the surrogate, the models
for integration over the missing counterfactual surrogate responses, and the
estimation methods. Estimated maximum likelihood and pseudo-score can be used
for estimation, and the bootstrap for inference. A variety of post-estimation
summary methods are provided, including print, summary, plot, and testing.
Author: Michael C Sachs [aut, cre],
Erin E Gabriel [aut]
Maintainer: Michael C Sachs <sachsmc@gmail.com>
Diff between pseval versions 1.3.0 dated 2016-09-23 and 1.3.1 dated 2019-01-28
pseval-1.3.0/pseval/inst/doc/cheatsheet.pdf |only pseval-1.3.1/pseval/DESCRIPTION | 11 pseval-1.3.1/pseval/MD5 | 103 - pseval-1.3.1/pseval/NEWS | 5 pseval-1.3.1/pseval/R/design.R | 4 pseval-1.3.1/pseval/R/integrate.R | 763 +++++++------- pseval-1.3.1/pseval/R/print.R | 2 pseval-1.3.1/pseval/R/pseudo-score.R | 205 +-- pseval-1.3.1/pseval/R/pseval-constructors.R | 2 pseval-1.3.1/pseval/README.md | 6 pseval-1.3.1/pseval/build/vignette.rds |binary pseval-1.3.1/pseval/inst/CITATION | 27 pseval-1.3.1/pseval/inst/doc/introduction.R | 50 pseval-1.3.1/pseval/inst/doc/introduction.Rmd | 24 pseval-1.3.1/pseval/inst/doc/introduction.html | 1076 ++++++++++---------- pseval-1.3.1/pseval/man/TE.Rd | 1 pseval-1.3.1/pseval/man/add_bootstrap.Rd | 47 pseval-1.3.1/pseval/man/add_estimate.Rd | 41 pseval-1.3.1/pseval/man/add_integration.Rd | 67 - pseval-1.3.1/pseval/man/add_riskmodel.Rd | 1 pseval-1.3.1/pseval/man/calc_STG.Rd | 72 - pseval-1.3.1/pseval/man/calc_risk.Rd | 4 pseval-1.3.1/pseval/man/empirical_TE.Rd | 1 pseval-1.3.1/pseval/man/empirical_VE.Rd | 1 pseval-1.3.1/pseval/man/expand_augdata.Rd | 39 pseval-1.3.1/pseval/man/generate_example_data.Rd | 29 pseval-1.3.1/pseval/man/integrate_bivnorm.Rd | 51 pseval-1.3.1/pseval/man/integrate_nonparametric.Rd | 39 pseval-1.3.1/pseval/man/integrate_parametric.Rd | 45 pseval-1.3.1/pseval/man/integrate_semiparametric.Rd | 45 pseval-1.3.1/pseval/man/plot.psdesign.Rd | 1 pseval-1.3.1/pseval/man/plus-.ps.Rd | 55 - pseval-1.3.1/pseval/man/print.psdesign.Rd | 41 pseval-1.3.1/pseval/man/ps_bootstrap.Rd | 55 - pseval-1.3.1/pseval/man/ps_estimate.Rd | 47 pseval-1.3.1/pseval/man/psdesign.Rd | 103 - pseval-1.3.1/pseval/man/pseudo_score.Rd | 41 pseval-1.3.1/pseval/man/risk.logit.Rd | 35 pseval-1.3.1/pseval/man/risk.probit.Rd | 35 pseval-1.3.1/pseval/man/risk_binary.Rd | 39 pseval-1.3.1/pseval/man/risk_continuous.Rd | 1 pseval-1.3.1/pseval/man/risk_exponential.Rd | 33 pseval-1.3.1/pseval/man/risk_poisson.Rd | 33 pseval-1.3.1/pseval/man/risk_weibull.Rd | 33 pseval-1.3.1/pseval/man/riskcalc.Rd | 51 pseval-1.3.1/pseval/man/sp_locscale.Rd | 57 - pseval-1.3.1/pseval/man/stg.Rd | 37 pseval-1.3.1/pseval/man/summarize_bs.Rd | 42 pseval-1.3.1/pseval/man/summary.psdesign.Rd | 1 pseval-1.3.1/pseval/man/verify_trt.Rd | 31 pseval-1.3.1/pseval/man/wem_test.Rd | 29 pseval-1.3.1/pseval/vignettes/introduction.Rmd | 24 pseval-1.3.1/pseval/vignettes/psreferences.bib | 3 53 files changed, 1809 insertions(+), 1779 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-08-08 1.1
2017-04-27 1.0
Title: Hierarchical Models for Parametric and Semi-Parametric Analyses
of Semi-Competing Risks Data
Description: Hierarchical multistate models are considered to perform the analysis of independent/clustered semi-competing risks data. The package allows to choose the specification for model components from a range of options giving users substantial flexibility, including: accelerated failure time or proportional hazards regression models; parametric or non-parametric specifications for baseline survival functions and cluster-specific random effects distribution; a Markov or semi-Markov specification for terminal event following non-terminal event. While estimation is mainly performed within the Bayesian paradigm, the package also provides the maximum likelihood estimation approach for several parametric models. The package also includes functions for univariate survival analysis as complementary analysis tools.
Author: Kyu Ha Lee, Catherine Lee, Danilo Alvares, and Sebastien Haneuse
Maintainer: Kyu Ha Lee <klee15239@gmail.com>
Diff between SemiCompRisks versions 3.2 dated 2019-01-20 and 3.3 dated 2019-01-28
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/methods.R | 38 +++++++++++++++++++------------------- inst/doc/SemiCompRisks.pdf |binary man/SemiCompRisks-package.Rd | 4 ++-- 5 files changed, 29 insertions(+), 29 deletions(-)