Title: Personalized Treatment Evaluator
Description: We provide inference for personalized medicine models. Namely, we answer the questions: (1) how much better does a purported personalized recommendation engine for treatments do over a business-as-usual approach and (2) is that difference statistically significant?
Author: Adam Kapelner, Alina Levine & Justin Bleich
Maintainer: Adam Kapelner <kapelner@qc.cuny.edu>
Diff between PTE versions 1.6 dated 2017-10-10 and 1.7 dated 2019-01-30
CHANGELOG | 39 - DESCRIPTION | 8 MD5 | 22 R/bootstrap_inference.R | 1142 ++++++++++++++++++----------------- R/create_PTE_results_object.R | 370 +++++------ R/plot.R | 96 +- R/print_and_summary.R | 189 +++-- R/zzz.R | 4 man/PTE_bootstrap_inference.Rd | 3 man/plot.PTE_bootstrap_results.Rd | 2 man/print.PTE_bootstrap_results.Rd | 2 man/summary.PTE_bootstrap_results.Rd | 2 12 files changed, 971 insertions(+), 908 deletions(-)
Title: Performs Common Linear Algebra Operations Used in Quantum
Computing
Description: Contains basic structures and operations used frequently in quantum computing. Intended to be a convenient tool to help in practicing the linear algebra involved in quantum operations. Has functionality for the creation of arbitrarily sized kets, bras, matrices and implements quantum gates, inner products, and tensor products. Contains all commonly used quantum gates, creates arbitrarily controlled versions of all gates, and can simulate complete or partial measurements of kets. Can simulate the Quantum Fourier Transform developed by Shor (1999) and implements Shor's algorithm, factoring numbers up to 21. Implements modular arithmetic commonly found in quantum algorithms and can convert functions into equivalent quantum gates. Simulates the training of a quantum neural network developed by Schuld (2018) which can classify the MNIST dataset.
Author: Salonik Resch
Maintainer: Salonik Resch <resc0059@umn.edu>
Diff between QuantumOps versions 2.2 dated 2019-01-17 and 2.3 dated 2019-01-30
DESCRIPTION | 10 +++++----- MD5 | 31 +++++++++++++++++++++---------- NAMESPACE | 10 ++++++++-- R/G.R |only R/QuantumMNIST256Classifier.R |only R/SWAP.R |only R/Shor.R | 3 ++- R/bigate.R |only R/cntrld.R |only R/controlled.R | 2 +- R/extractMNIST.R |only R/measure.R | 2 +- R/reduceMeasure.R | 2 +- R/unitary.R | 3 +-- man/G.Rd |only man/QuantumMNIST256Classifier.Rd |only man/SWAP.Rd |only man/cntrld.Rd |only man/extractMNIST.Rd |only man/measure.Rd | 4 ++-- man/reduceMeasure.Rd | 4 ++-- man/unitary.Rd | 5 ++++- 22 files changed, 48 insertions(+), 28 deletions(-)
Title: Web-Processing of Large Gridded Datasets
Description: Processes gridded datasets found on the U.S. Geological Survey
Geo Data Portal web application or elsewhere, using a web-enabled workflow
that eliminates the need to download and store large datasets that are reliably
hosted on the Internet. The package provides access to several data subset and
summarization algorithms that are available on remote web processing servers.
Author: Jordan Read [aut, cre],
Jordan Walker [aut],
Alison Appling [aut],
David Blodgett [aut],
Emily Read [aut],
Luke Winslow [aut],
Lindsay Carr [aut],
David Watkins [aut]
Maintainer: Jordan Read <jread@usgs.gov>
Diff between geoknife versions 1.6.1 dated 2018-08-22 and 1.6.3 dated 2019-01-30
DESCRIPTION | 10 +- MD5 | 32 ++++----- NEWS.md | 7 -- R/algorithm-webprocess.R | 2 R/inputs-webprocess.R | 2 R/waitUntilFinished.R | 9 ++ build/vignette.rds |binary inst/doc/custom_data_sources.html | 30 +++++++- inst/doc/geoknife.html | 30 +++++++- inst/doc/plot_geotiff.html | 28 +++++++- man/algorithm-webprocess.Rd | 2 man/inputs-webprocess.Rd | 2 tests/testthat/00_create_test_data.R | 108 ++++++++++++++++---------------- tests/testthat/test-geoknife_setters.R | 2 tests/testthat/test-geoknife_utils.R | 11 +-- tests/testthat/test-knife_shorthand.R | 1 tests/testthat/test-webprocess_object.R | 1 17 files changed, 180 insertions(+), 97 deletions(-)
Title: Standard Date Calculations for Business
Description: Get a current financial year, start of current
month, End of current month, start of financial year and end of it.
Allow for offset from the date.
Author: Mick Mioduszewski [aut, cre]
Maintainer: Mick Mioduszewski <mick@mioduszewski.net>
Diff between busdater versions 0.1.0 dated 2019-01-17 and 0.2.0 dated 2019-01-30
DESCRIPTION | 32 +-- MD5 | 37 ++- NAMESPACE | 3 NEWS.md |only R/busdater-deprecated.R |only R/period_dates.R | 208 ++++++++++++++++----- README.md | 34 +++ build/vignette.rds |binary inst/doc/busdates-general-FLOSS-documentation.R |only inst/doc/busdates-general-FLOSS-documentation.Rmd |only inst/doc/busdates-general-FLOSS-documentation.html |only inst/doc/busdates-introduction-vignette.R | 32 +-- inst/doc/busdates-introduction-vignette.Rmd | 52 ++--- inst/doc/busdates-introduction-vignette.html | 54 ++--- man/FY.Rd | 11 - man/busdater-deprecated.Rd |only man/busdater-package.Rd | 19 + man/get_boundary.Rd |only man/get_fy.Rd |only man/period_boundaries.Rd | 10 - tests/testthat.R | 7 tests/testthat/test_period_dates.R | 67 ++++-- vignettes/busdates-general-FLOSS-documentation.Rmd |only vignettes/busdates-introduction-vignette.Rmd | 52 ++--- 24 files changed, 410 insertions(+), 208 deletions(-)
Title: Get Data Frame Representations of 'Elasticsearch' Results
Description: 'Elasticsearch' is an open-source, distributed, document-based datastore
(<https://www.elastic.co/products/elasticsearch>).
It provides an 'HTTP' 'API' for querying the database and extracting datasets, but that
'API' was not designed for common data science workflows like pulling large batches of
records and normalizing those documents into a data frame that can be used as a training
dataset for statistical models. 'uptasticsearch' provides an interface for 'Elasticsearch'
that is explicitly designed to make these data science workflows easy and fun.
Author: James Lamb [aut, cre],
Nick Paras [aut],
Austin Dickey [aut],
Michael Frasco [ctb],
Weiwen Gu [ctb],
Will Dearden [ctb],
Uptake Technologies Inc. [cph]
Maintainer: James Lamb <james.lamb@uptake.com>
Diff between uptasticsearch versions 0.3.0 dated 2018-06-19 and 0.3.1 dated 2019-01-30
uptasticsearch-0.3.0/uptasticsearch/R/get_counts.R |only uptasticsearch-0.3.0/uptasticsearch/man/get_counts.Rd |only uptasticsearch-0.3.1/uptasticsearch/DESCRIPTION | 12 uptasticsearch-0.3.1/uptasticsearch/MD5 | 52 - uptasticsearch-0.3.1/uptasticsearch/NAMESPACE | 2 uptasticsearch-0.3.1/uptasticsearch/NEWS.md | 13 uptasticsearch-0.3.1/uptasticsearch/R/chomp_aggs.R | 74 +- uptasticsearch-0.3.1/uptasticsearch/R/chomp_hits.R | 28 uptasticsearch-0.3.1/uptasticsearch/R/es_search.R | 315 +++++----- uptasticsearch-0.3.1/uptasticsearch/R/get_fields.R | 52 - uptasticsearch-0.3.1/uptasticsearch/R/parse_date_time.R | 50 - uptasticsearch-0.3.1/uptasticsearch/R/unpack_nested_data.R | 44 - uptasticsearch-0.3.1/uptasticsearch/README.md | 123 +-- uptasticsearch-0.3.1/uptasticsearch/build |only uptasticsearch-0.3.1/uptasticsearch/inst/doc |only uptasticsearch-0.3.1/uptasticsearch/man/chomp_aggs.Rd | 2 uptasticsearch-0.3.1/uptasticsearch/man/chomp_hits.Rd | 6 uptasticsearch-0.3.1/uptasticsearch/man/es_search.Rd | 23 uptasticsearch-0.3.1/uptasticsearch/man/parse_date_time.Rd | 4 uptasticsearch-0.3.1/uptasticsearch/man/unpack_nested_data.Rd | 12 uptasticsearch-0.3.1/uptasticsearch/tests/testthat/test-chomp_aggs.R | 85 +- uptasticsearch-0.3.1/uptasticsearch/tests/testthat/test-chomp_hits.R | 1 uptasticsearch-0.3.1/uptasticsearch/tests/testthat/test-es_search.R | 1 uptasticsearch-0.3.1/uptasticsearch/tests/testthat/test-get_fields.R | 4 uptasticsearch-0.3.1/uptasticsearch/tests/testthat/test-integration.R | 1 uptasticsearch-0.3.1/uptasticsearch/tests/testthat/test-parse_date_time.R | 1 uptasticsearch-0.3.1/uptasticsearch/tests/testthat/test-repo_characteristics.R | 1 uptasticsearch-0.3.1/uptasticsearch/tests/testthat/test-unpack_nested_data.R | 1 uptasticsearch-0.3.1/uptasticsearch/vignettes |only 29 files changed, 471 insertions(+), 436 deletions(-)
More information about uptasticsearch at CRAN
Permanent link
Title: Cross-National Data on Sub-National Violence
Description: Tools to download and merge data files on sub-national conflict, violence and protests from <http://www.x-sub.org>.
Author: Yuri Zhukov [cre],
Christian Davenport [aut],
Nadiya Kostyuk [aut]
Maintainer: Yuri Zhukov <zhukov@umich.edu>
Diff between xSub versions 2.0.1 dated 2018-10-13 and 2.0.2 dated 2019-01-30
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/get_xSub.R | 25 +++++++++++++++++++++++-- R/get_xSub_multi.R | 19 +++++++++++++++++-- man/get_xSub.Rd | 12 ++++++------ man/get_xSub_multi.Rd | 8 ++++---- 6 files changed, 59 insertions(+), 23 deletions(-)
Title: Tools to Handle Taxonomic Lists
Description: Some tools to work with taxonomic name lists.
Author: Vijay Barve [aut, cre] (<https://orcid.org/0000-0002-4852-2567>)
Maintainer: Vijay Barve <vijay.barve@gmail.com>
Diff between taxotools versions 0.0.5 dated 2019-01-23 and 0.0.7 dated 2019-01-30
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NEWS | 2 +- R/BuildCSList.R | 3 ++- R/ExpandSyn.R | 6 ++++-- R/GetITISSyn.R | 2 +- R/GetWikiSyn.R | 2 +- man/BuildCSList.Rd | 2 ++ man/GetITISSyn.Rd | 2 +- man/GetWikiSyn.Rd | 2 +- 10 files changed, 27 insertions(+), 22 deletions(-)
Title: Interpolate Munsell Renotation Data from Hue/Chroma to CIE/RGB
Description: Methods for interpolating data in the Munsell color system following the ASTM D-1535 standard. Hues and chromas with decimal values can be interpolated and converted to/from the Munsell color system and CIE xyY, CIE XYZ, CIE Lab, CIE Luv, or RGB. Includes ISCC-NBS color block lookup. Based on the work by Paul Centore, "The Munsell and Kubelka-Munk Toolbox".
Author: Jose Gama [aut, trl],
Paul Centore [aut, cph],
Glenn Davis [aut, cre]
Maintainer: Glenn Davis <gdavis@gluonics.com>
Diff between munsellinterpol versions 2.1-3 dated 2018-07-27 and 2.2-1 dated 2019-01-30
DESCRIPTION | 8 ++-- MD5 | 30 +++++++++--------- NEWS.md | 8 ++++ R/MunsellToxyY.R | 2 + R/RGB.R | 20 ++++++------ R/events.R | 58 +++++++++++++++++++----------------- build/vignette.rds |binary inst/doc/dental.Rmd | 5 +-- inst/doc/dental.html | 17 +++++----- inst/doc/lightness.pdf |binary inst/doc/lociHC.pdf |binary inst/doc/lociHC.rnw | 2 - inst/doc/munsellinterpol-guide.html | 22 +++++++------ inst/extdata/PantoneCoY.txt | 1 vignettes/dental.Rmd | 5 +-- vignettes/lociHC.rnw | 2 - 16 files changed, 101 insertions(+), 79 deletions(-)
More information about munsellinterpol at CRAN
Permanent link
Title: Find, Map, and Gather Environmental Data and Metadata
Description: A tool for locating, mapping, and gathering environmental data and metadata, worldwide. Users can search for and filter metadata from > 157,000 environmental monitoring stations among 219 countries/territories and >20 networks/organizations via elevation, location, active dates, elements measured (e.g., temperature, precipitation), country, network, and/or known identifier. Future updates to the package will allow the user to obtain datasets from stations within the database.
Author: Josh Roberti [aut, cre],
Cody Flagg [aut],
Lee Stanish [aut],
Robert Lee [aut]
Maintainer: Josh Roberti <jaroberti87@gmail.com>
Diff between metScanR versions 1.2.0 dated 2018-03-19 and 1.2.1 dated 2019-01-30
DESCRIPTION | 20 ++++++++------------ MD5 | 28 ++++++++++++++-------------- NEWS.md | 8 +++++++- R/getID.R | 10 +++++----- R/getNearby.R | 4 +++- R/getNetwork.R | 2 +- R/getVars.R | 5 ++++- R/mapSiteFinder.R | 13 ++++++------- R/updateDatabase.R | 13 ++++++++----- data/dbLog.rda |binary data/metScanR_DB.rda |binary data/metScanR_terms.rda |binary man/getId.Rd | 10 +++++----- man/getNetwork.Rd | 2 +- man/siteFinder.Rd | 4 ++-- 15 files changed, 64 insertions(+), 55 deletions(-)
More information about dominanceanalysis at CRAN
Permanent link
Title: Bayesian Preference Learning with the Mallows Rank Model
Description: An implementation of the Bayesian version of the Mallows rank model (Vitelli et al., Journal of Machine Learning Research, 2018 <http://jmlr.org/papers/v18/15-481.html>; Crispino et al., to appear in Annals of Applied Statistics). Both Cayley, footrule, Hamming, Kendall, Spearman, and Ulam distances are supported in the models. The rank data to be analyzed can be in the form of complete rankings, top-k rankings, partially missing rankings, as well as consistent and inconsistent pairwise preferences. Several functions for plotting and studying the posterior distributions of parameters are provided. The package also provides functions for estimating the partition function (normalizing constant) of the Mallows rank model, both with the importance sampling algorithm of Vitelli et al. and asymptotic approximation with the IPFP algorithm (Mukherjee, Annals of Statistics, 2016 <doi:10.1214/15-AOS1389>).
Author: Oystein Sorensen, Valeria Vitelli, Marta Crispino, Qinghua Liu
Maintainer: Oystein Sorensen <oystein.sorensen.1985@gmail.com>
Diff between BayesMallows versions 0.2.0 dated 2018-11-30 and 0.3.0 dated 2019-01-30
BayesMallows-0.2.0/BayesMallows/inst/doc/BayesMallowsPackage.R |only BayesMallows-0.2.0/BayesMallows/inst/examples/tidy_mcmc_example.R |only BayesMallows-0.2.0/BayesMallows/man/compute_cp_consensus.Rd |only BayesMallows-0.2.0/BayesMallows/man/compute_map_consensus.Rd |only BayesMallows-0.2.0/BayesMallows/man/get_summation_distances.Rd |only BayesMallows-0.2.0/BayesMallows/man/tidy_mcmc.Rd |only BayesMallows-0.2.0/BayesMallows/src/clustering.cpp |only BayesMallows-0.2.0/BayesMallows/src/clustering.h |only BayesMallows-0.2.0/BayesMallows/src/distfuns.cpp |only BayesMallows-0.2.0/BayesMallows/src/distfuns.h |only BayesMallows-0.2.0/BayesMallows/tests/testthat/test_pairwise_functions.R |only BayesMallows-0.3.0/BayesMallows/DESCRIPTION | 15 BayesMallows-0.3.0/BayesMallows/MD5 | 159 BayesMallows-0.3.0/BayesMallows/NAMESPACE | 3 BayesMallows-0.3.0/BayesMallows/NEWS.md | 30 BayesMallows-0.3.0/BayesMallows/R/BayesMallows.R | 25 BayesMallows-0.3.0/BayesMallows/R/RcppExports.R | 41 BayesMallows-0.3.0/BayesMallows/R/assess_convergence.R | 26 BayesMallows-0.3.0/BayesMallows/R/assign_cluster.R | 3 BayesMallows-0.3.0/BayesMallows/R/compute_consensus.R | 70 BayesMallows-0.3.0/BayesMallows/R/compute_mallows.R | 149 BayesMallows-0.3.0/BayesMallows/R/compute_mallows_mixtures.R | 23 BayesMallows-0.3.0/BayesMallows/R/compute_posterior_intervals.R | 3 BayesMallows-0.3.0/BayesMallows/R/estimate_partition_function.R | 33 BayesMallows-0.3.0/BayesMallows/R/generate_constraints.R | 120 BayesMallows-0.3.0/BayesMallows/R/generate_initial_ranking.R | 38 BayesMallows-0.3.0/BayesMallows/R/generate_transitive_closure.R | 45 BayesMallows-0.3.0/BayesMallows/R/misc.R | 37 BayesMallows-0.3.0/BayesMallows/R/plot.BayesMallows.R | 32 BayesMallows-0.3.0/BayesMallows/R/predict_top_k.R | 3 BayesMallows-0.3.0/BayesMallows/R/sample_mallows.R | 8 BayesMallows-0.3.0/BayesMallows/R/sysdata.rda |binary BayesMallows-0.3.0/BayesMallows/R/tidy_mcmc.R | 70 BayesMallows-0.3.0/BayesMallows/build/partial.rdb |binary BayesMallows-0.3.0/BayesMallows/build/vignette.rds |binary BayesMallows-0.3.0/BayesMallows/inst/REFERENCES.bib | 19 BayesMallows-0.3.0/BayesMallows/inst/doc/BayesMallowsPackage.Rmd | 781 -- BayesMallows-0.3.0/BayesMallows/inst/doc/BayesMallowsPackage.html | 2835 ---------- BayesMallows-0.3.0/BayesMallows/inst/examples/compute_mallows_mixtures_example.R | 11 BayesMallows-0.3.0/BayesMallows/inst/examples/generate_constraints_example.R |only BayesMallows-0.3.0/BayesMallows/inst/examples/generate_initial_ranking_example.R | 9 BayesMallows-0.3.0/BayesMallows/inst/examples/generate_transitive_closure_example.R | 9 BayesMallows-0.3.0/BayesMallows/man/BayesMallows.Rd | 24 BayesMallows-0.3.0/BayesMallows/man/assess_convergence.Rd | 4 BayesMallows-0.3.0/BayesMallows/man/compute_mallows.Rd | 96 BayesMallows-0.3.0/BayesMallows/man/compute_mallows_mixtures.Rd | 16 BayesMallows-0.3.0/BayesMallows/man/estimate_partition_function.Rd | 6 BayesMallows-0.3.0/BayesMallows/man/generate_constraints.Rd | 31 BayesMallows-0.3.0/BayesMallows/man/generate_initial_ranking.Rd | 14 BayesMallows-0.3.0/BayesMallows/man/generate_transitive_closure.Rd | 14 BayesMallows-0.3.0/BayesMallows/man/get_rank_distance.Rd | 11 BayesMallows-0.3.0/BayesMallows/man/plot.BayesMallows.Rd | 4 BayesMallows-0.3.0/BayesMallows/man/plot_elbow.Rd | 11 BayesMallows-0.3.0/BayesMallows/man/rmallows.Rd | 4 BayesMallows-0.3.0/BayesMallows/man/run_mcmc.Rd | 15 BayesMallows-0.3.0/BayesMallows/man/sample_mallows.Rd | 8 BayesMallows-0.3.0/BayesMallows/src/RcppExports.cpp | 46 BayesMallows-0.3.0/BayesMallows/src/distances.cpp |only BayesMallows-0.3.0/BayesMallows/src/distances.h |only BayesMallows-0.3.0/BayesMallows/src/importance_sampling.cpp | 4 BayesMallows-0.3.0/BayesMallows/src/leapandshift.cpp | 36 BayesMallows-0.3.0/BayesMallows/src/leapandshift.h | 2 BayesMallows-0.3.0/BayesMallows/src/misc.cpp | 29 BayesMallows-0.3.0/BayesMallows/src/misc.h | 1 BayesMallows-0.3.0/BayesMallows/src/missing_data.cpp | 97 BayesMallows-0.3.0/BayesMallows/src/missing_data.h | 13 BayesMallows-0.3.0/BayesMallows/src/mixtures.cpp |only BayesMallows-0.3.0/BayesMallows/src/mixtures.h |only BayesMallows-0.3.0/BayesMallows/src/pairwise_comparisons.cpp | 145 BayesMallows-0.3.0/BayesMallows/src/pairwise_comparisons.h | 17 BayesMallows-0.3.0/BayesMallows/src/parameterupdates.cpp | 66 BayesMallows-0.3.0/BayesMallows/src/parameterupdates.h | 18 BayesMallows-0.3.0/BayesMallows/src/partitionfuns.cpp | 125 BayesMallows-0.3.0/BayesMallows/src/partitionfuns.h | 2 BayesMallows-0.3.0/BayesMallows/src/rmallows.cpp | 12 BayesMallows-0.3.0/BayesMallows/src/run_mcmc.cpp | 256 BayesMallows-0.3.0/BayesMallows/src/subset.cpp |only BayesMallows-0.3.0/BayesMallows/src/subset.h |only BayesMallows-0.3.0/BayesMallows/tests/testthat.R | 1 BayesMallows-0.3.0/BayesMallows/tests/testthat/test_compute_consensus.R |only BayesMallows-0.3.0/BayesMallows/tests/testthat/test_compute_mallows.R | 26 BayesMallows-0.3.0/BayesMallows/tests/testthat/test_distance_function.R | 12 BayesMallows-0.3.0/BayesMallows/tests/testthat/test_generate_ranking.R |only BayesMallows-0.3.0/BayesMallows/tests/testthat/test_mcmc_function.R | 6 BayesMallows-0.3.0/BayesMallows/tests/testthat/test_misc_cpp.R | 12 BayesMallows-0.3.0/BayesMallows/tests/testthat/test_partition_function.R | 25 BayesMallows-0.3.0/BayesMallows/tests/testthat/test_plot.R | 4 BayesMallows-0.3.0/BayesMallows/tests/testthat/test_print.R | 4 BayesMallows-0.3.0/BayesMallows/tests/testthat/test_sample_mallows.R | 2 BayesMallows-0.3.0/BayesMallows/tests/testthat/test_transitive_closure.R |only BayesMallows-0.3.0/BayesMallows/vignettes/BayesMallowsPackage.Rmd | 781 -- 91 files changed, 1215 insertions(+), 5382 deletions(-)
Title: Standard and User-Defined RGB Color Spaces, with Conversion
Between RGB and CIE XYZ
Description: Standard RGB spaces included are sRGB, 'Adobe' RGB, 'ProPhoto' RGB, BT.709, and others. User-defined RGB spaces are also possible. There is partial support for ACES Color workflows.
Author: Glenn Davis [aut,cre]
Maintainer: Glenn Davis <gdavis@gluonics.com>
Diff between spacesRGB versions 1.1-1 dated 2018-07-19 and 1.2-2 dated 2019-01-30
spacesRGB-1.1-1/spacesRGB/man/figures |only spacesRGB-1.1-1/spacesRGB/man/spacesRGB-package.Rd |only spacesRGB-1.1-1/spacesRGB/tests/Rplots.pdf |only spacesRGB-1.2-2/spacesRGB/DESCRIPTION | 14 spacesRGB-1.2-2/spacesRGB/MD5 | 84 +- spacesRGB-1.2-2/spacesRGB/NAMESPACE | 113 +++ spacesRGB-1.2-2/spacesRGB/NEWS.md | 8 spacesRGB-1.2-2/spacesRGB/R/ACES.R |only spacesRGB-1.2-2/spacesRGB/R/DCDM.R |only spacesRGB-1.2-2/spacesRGB/R/HLG.R |only spacesRGB-1.2-2/spacesRGB/R/OETFs.R | 271 ++++++-- spacesRGB-1.2-2/spacesRGB/R/OOTF.R |only spacesRGB-1.2-2/spacesRGB/R/PODT.R |only spacesRGB-1.2-2/spacesRGB/R/PQ.R |only spacesRGB-1.2-2/spacesRGB/R/RRT.R |only spacesRGB-1.2-2/spacesRGB/R/SSTS.R |only spacesRGB-1.2-2/spacesRGB/R/TransferFunction.R |only spacesRGB-1.2-2/spacesRGB/R/conversion.R | 239 +++++-- spacesRGB-1.2-2/spacesRGB/R/datasets.R | 46 - spacesRGB-1.2-2/spacesRGB/R/elemTransferFunction.R |only spacesRGB-1.2-2/spacesRGB/R/hooks.R | 46 + spacesRGB-1.2-2/spacesRGB/R/installation.R | 637 +++++++++----------- spacesRGB-1.2-2/spacesRGB/R/logging.R | 18 spacesRGB-1.2-2/spacesRGB/R/sysdata.rda |binary spacesRGB-1.2-2/spacesRGB/R/tonescales.R |only spacesRGB-1.2-2/spacesRGB/R/utils.R | 194 +++++- spacesRGB-1.2-2/spacesRGB/build |only spacesRGB-1.2-2/spacesRGB/inst |only spacesRGB-1.2-2/spacesRGB/man/DCDM.Rd |only spacesRGB-1.2-2/spacesRGB/man/HLG.Rd |only spacesRGB-1.2-2/spacesRGB/man/OOTF.Rd |only spacesRGB-1.2-2/spacesRGB/man/PODT.Rd |only spacesRGB-1.2-2/spacesRGB/man/PQ.Rd |only spacesRGB-1.2-2/spacesRGB/man/RGBfromXYZ.Rd | 34 - spacesRGB-1.2-2/spacesRGB/man/RGBspaces.Rd | 199 +----- spacesRGB-1.2-2/spacesRGB/man/RRT.Rd |only spacesRGB-1.2-2/spacesRGB/man/SMPTE.Rd |only spacesRGB-1.2-2/spacesRGB/man/TransferFunction.Rd |only spacesRGB-1.2-2/spacesRGB/man/XYZfromRGB.Rd | 34 - spacesRGB-1.2-2/spacesRGB/man/basic-paramTF.Rd |only spacesRGB-1.2-2/spacesRGB/man/basicTF.Rd |only spacesRGB-1.2-2/spacesRGB/man/composition.Rd |only spacesRGB-1.2-2/spacesRGB/man/installRGB.Rd |only spacesRGB-1.2-2/spacesRGB/man/inverse.Rd |only spacesRGB-1.2-2/spacesRGB/man/macros |only spacesRGB-1.2-2/spacesRGB/man/metadata.Rd |only spacesRGB-1.2-2/spacesRGB/man/miscTF.Rd |only spacesRGB-1.2-2/spacesRGB/man/plot.Rd |only spacesRGB-1.2-2/spacesRGB/man/primaries.Rd |only spacesRGB-1.2-2/spacesRGB/man/print.Rd |only spacesRGB-1.2-2/spacesRGB/man/transfer.Rd |only spacesRGB-1.2-2/spacesRGB/man/validate.Rd |only spacesRGB-1.2-2/spacesRGB/tests/test-ACES.R |only spacesRGB-1.2-2/spacesRGB/tests/test-conversions.R | 179 ++++- spacesRGB-1.2-2/spacesRGB/tests/test-installation.R | 12 spacesRGB-1.2-2/spacesRGB/tests/test_values.txt |only spacesRGB-1.2-2/spacesRGB/vignettes |only 57 files changed, 1373 insertions(+), 755 deletions(-)
Title: Geographic Data Analysis and Modeling
Description: Reading, writing, manipulating, analyzing and modeling of gridded spatial data. The package implements basic and high-level functions. Processing of very large files is supported.
Author: Robert J. Hijmans [cre, aut] (<https://orcid.org/0000-0001-5872-2872>),
Jacob van Etten [ctb],
Michael Sumner [ctb],
Joe Cheng [ctb],
Andrew Bevan [ctb],
Roger Bivand [ctb],
Lorenzo Busetto [ctb],
Mort Canty [ctb],
David Forrest [ctb],
Aniruddha Ghosh [ctb],
Duncan Golicher [ctb],
Josh Gray [ctb],
Jonathan A. Greenberg [ctb],
Paul Hiemstra [ctb],
Institute for Mathematics Applied Geosciences [cph],
Charles Karney [ctb],
Matteo Mattiuzzi [ctb],
Steven Mosher [ctb],
Jakub Nowosad [ctb],
Edzer Pebesma [ctb],
Oscar Perpinan Lamigueiro [ctb],
Etienne B. Racine [ctb],
Barry Rowlingson [ctb],
Ashton Shortridge [ctb],
Bill Venables [ctb],
Rafael Wueest [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between raster versions 2.8-4 dated 2018-11-03 and 2.8-19 dated 2019-01-30
ChangeLog | 41 - DESCRIPTION | 41 - MD5 | 184 +++--- NAMESPACE | 15 R/AAgeneric_functions.R | 61 +- R/adjacent.R | 5 R/area.R | 4 R/as.data.frame.R | 4 R/atan2.R | 4 R/buffer.R | 4 R/calc.R | 4 R/canProcessInMemory.R | 6 R/cellRowCol.R | 96 ++- R/clamp.R | 5 R/connection.R | 13 R/cover.R | 4 R/coverPolygons.R | 6 R/crosstab.R | 60 +- R/disaggregate.R | 5 R/distance.R | 5 R/erase.R | 5 R/extract.R | 6 R/fasterize.R | 10 R/geom.R | 4 R/getData.R | 23 R/getValuesBlock.R | 8 R/gridDistance.R | 5 R/head.R | 10 R/isLonLat.R | 13 R/kernelDensity.R | 32 - R/mask.R | 5 R/merge.R | 4 R/mosaic.R | 5 R/netCDFread.R | 4 R/netCDFreadCells.R | 4 R/netCDFtoRasterCD.R | 29 R/netCDFtoStack.R | 10 R/netCDFutil.R | 3 R/netCDFwriteCD.R | 4 R/nsidcICE.R | 114 +-- R/overlay.R | 4 R/predict.R | 20 R/print.R | 2 R/projection.R | 21 R/rasterFromGDAL.R | 2 R/rasterOptions.R | 8 R/rasterizePolygons.R | 13 R/reclassify.R | 6 R/replaceProperties.R | 33 - R/sf.R | 18 R/show.R | 4 R/subset.R | 62 +- R/unique.R | 31 - R/writeValues.R | 5 R/xyCell.R | 18 R/zonal.R | 6 R/zoom.R | 6 inst/doc/Raster.Rnw | 1132 +++++++++++++++++++------------------- inst/doc/Raster.pdf |binary inst/doc/functions.Rnw | 832 +++++++++++++-------------- inst/doc/functions.pdf |binary inst/doc/rasterfile.Rnw | 282 ++++----- inst/doc/rasterfile.pdf |binary inst/external/lux.dbf |binary inst/external/lux.rds |only man/Arith-methods.Rd | 15 man/Compare-methods.Rd | 8 man/Math-methods.Rd | 6 man/Summary-methods.Rd | 1 man/adjacent.Rd | 8 man/as.logical-methods.Rd | 2 man/bind.Rd | 18 man/calc.Rd | 2 man/cellFrom.Rd | 11 man/clamp.Rd | 2 man/geom.Rd | 16 man/getValues.Rd | 2 man/getValuesBlock.Rd | 6 man/ncell.Rd | 7 man/overlay.Rd | 6 man/predict.Rd | 14 man/programming.Rd | 2 man/projectRaster.Rd | 8 man/projection.Rd | 10 man/raster.Rd | 340 +++++------ man/rasterize.Rd | 2 man/rowFromCell.Rd | 6 man/spEasy.Rd | 2 man/unique.Rd | 12 tests/testthat/test-sf-coercion.R | 83 +- tests/testthat/test-subset.R |only vignettes/Raster.Rnw | 1132 +++++++++++++++++++------------------- vignettes/functions.Rnw | 832 +++++++++++++-------------- vignettes/rasterfile.Rnw | 282 ++++----- 94 files changed, 3151 insertions(+), 3054 deletions(-)
Title: Spatial Data Download and Utility Functions
Description: A suite of conversion scripts to create internally standardized
spatial polygons data frames. Utility scripts use these data sets to return
values such as country, state, timezone, watershed, etc. associated with a
set of longitude/latitude pairs. (They also make cool maps.)
Author: Jonathan Callahan [aut, cre],
Tom Bergamaschi [aut],
Ruby Fore [aut],
Will Leahy [aut],
Helen Miller [aut],
Henry Nguyen [aut],
Robin Winstanley [aut],
Alice Yang [aut]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between MazamaSpatialUtils versions 0.6.0 dated 2019-01-27 and 0.6.1 dated 2019-01-30
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 5 +++++ R/MazamaSpatialUtils.R | 2 ++ inst/doc/MazamaSpatialUtils.html | 4 ++-- man/simplify.Rd | 2 ++ 6 files changed, 19 insertions(+), 10 deletions(-)
More information about MazamaSpatialUtils at CRAN
Permanent link
Title: Phylogenetic ANalyses of DiversificAtion
Description: Implements macroevolutionary analyses on phylogenetic trees. See
Morlon et al. (2010) <DOI:10.1371/journal.pbio.1000493>, Morlon et al. (2011)
<DOI:10.1073/pnas.1102543108>, Condamine et al. (2013) <DOI:10.1111/ele.12062>,
Morlon et al. (2014) <DOI:10.1111/ele.12251>, Manceau et al. (2015) <DOI:10.1111/ele.12415>,
Lewitus & Morlon (2016) <DOI:10.1093/sysbio/syv116>, Drury et al. (2016) <DOI:10.1093/sysbio/syw020>,
Manceau et al. (2016) <DOI:10.1093/sysbio/syw115>, Morlon et al. (2016) <DOI:10.1111/2041-210X.12526>,
Clavel & Morlon (2017) <DOI:10.1073/pnas.1606868114>, Drury et al. (2017) <DOI:10.1093/sysbio/syx079>,
Lewitus & Morlon (2017) <DOI:10.1093/sysbio/syx095>, Drury et al. (2018) <DOI:10.1371/journal.pbio.2003563>
and Clavel et al. (2019) <DOI:10.1093/sysbio/syy045>.
Author: Hélène Morlon [aut, cre, cph],
Eric Lewitus [aut, cph],
Fabien Condamine [aut, cph],
Marc Manceau [aut, cph],
Julien Clavel [aut, cph],
Jonathan Drury [aut, cph],
Olivier Billaud [aut, cph]
Maintainer: Hélène Morlon <morlon@biologie.ens.fr>
Diff between RPANDA versions 1.4 dated 2018-08-04 and 1.5 dated 2019-01-30
RPANDA-1.4/RPANDA/R/event_txt_into_events_row.R |only RPANDA-1.4/RPANDA/R/events_txt_into_events_table.R |only RPANDA-1.4/RPANDA/R/events_txt_list_into_events_table.R |only RPANDA-1.4/RPANDA/R/fit_t_comp_subgroup.r |only RPANDA-1.4/RPANDA/R/plot.fit_t.env.r |only RPANDA-1.4/RPANDA/R/sim_env_bd.r |only RPANDA-1.5/RPANDA/DESCRIPTION | 25 ++++--- RPANDA-1.5/RPANDA/MD5 | 54 ++++++++------- RPANDA-1.5/RPANDA/NAMESPACE | 11 +-- RPANDA-1.5/RPANDA/R/BGB_functions.R |only RPANDA-1.5/RPANDA/R/fit_bd.R | 8 +- RPANDA-1.5/RPANDA/R/fit_env.R | 8 +- RPANDA-1.5/RPANDA/R/fit_t_comp_subgroup.R |only RPANDA-1.5/RPANDA/R/plot.fit_t.env.R |only RPANDA-1.5/RPANDA/R/plot_fit_env.R | 9 +- RPANDA-1.5/RPANDA/R/plot_prob_dtt.R |only RPANDA-1.5/RPANDA/R/prob_dtt.R |only RPANDA-1.5/RPANDA/R/sim_env_bd.R |only RPANDA-1.5/RPANDA/R/sim_t_comp.R | 2 RPANDA-1.5/RPANDA/R/trimSimmap.R | 55 ++++++++-------- RPANDA-1.5/RPANDA/README.md | 9 +- RPANDA-1.5/RPANDA/man/CreateClassObject.Rd | 3 RPANDA-1.5/RPANDA/man/CreateGeoObject.Rd | 3 RPANDA-1.5/RPANDA/man/CreateGeobyClassObject.Rd | 2 RPANDA-1.5/RPANDA/man/GIC.Rd | 3 RPANDA-1.5/RPANDA/man/Posdef.Rd | 3 RPANDA-1.5/RPANDA/man/RPANDA-package.Rd | 21 ++++-- RPANDA-1.5/RPANDA/man/ancestral.Rd | 3 RPANDA-1.5/RPANDA/man/fit_bd.Rd | 2 RPANDA-1.5/RPANDA/man/fit_t_comp_subgroup.Rd | 2 RPANDA-1.5/RPANDA/man/fit_t_pl.Rd | 5 - RPANDA-1.5/RPANDA/man/gic_criterion.Rd | 3 RPANDA-1.5/RPANDA/man/phyl.pca_pl.Rd | 4 - RPANDA-1.5/RPANDA/man/plot_prob_dtt.Rd |only RPANDA-1.5/RPANDA/man/prob_dtt.Rd |only 35 files changed, 132 insertions(+), 103 deletions(-)
Title: Combined Evaluation and Split Access of Functions
Description: Some R functions, such as optim(), require a function
its gradient passed as separate arguments. When these are
expensive to calculate it may be much faster to calculate
the function (fn) and gradient (gr) together since they often share
many calculations (chain rule). This package allows the user
to pass in a single function that returns both the function
and gradient, then splits (hence 'splitfngr') them
so the results can be accessed
separately. The functions provided allow this to be done with
any number of functions/values, not just for functions and gradients.
Author: Collin Erickson
Maintainer: Collin Erickson <collinberickson@gmail.com>
Diff between splitfngr versions 0.1.1 dated 2016-09-16 and 0.1.2 dated 2019-01-30
DESCRIPTION | 9 +++++---- MD5 | 21 +++++++++++---------- NAMESPACE | 2 ++ NEWS.md | 6 +++++- R/optimization.R | 48 ++++++++++++++++++++++++++++++++++++++++++++++-- R/splitfngr.R | 10 ++++++---- man/fngr.Rd | 1 - man/grad_share.Rd | 9 +-------- man/lbfgs_share.Rd | 11 +++-------- man/make_share.Rd | 1 - man/nlminb_share.Rd |only man/optim_share.Rd | 7 +------ 12 files changed, 80 insertions(+), 45 deletions(-)
Title: R Interface for H2O Sparkling Water
Description: An extension package for 'sparklyr' that provides an R interface to
H2O Sparkling Water machine learning library (see <https://github.com/h2oai/sparkling-water> for more information).
Author: Jakub Hava [aut, cre],
Navdeep Gill [aut],
Erin LeDell [aut],
Michal Malohlava [aut],
JJ Allaire [aut],
H2O.ai [cph],
RStudio [cph]
Maintainer: Jakub Hava <jakub@h2o.ai>
Diff between rsparkling versions 0.2.16 dated 2019-01-17 and 0.2.18 dated 2019-01-30
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/h2o_context.R | 4 +--- R/sysdata.rda |binary tests/testthat/test_transforms.R | 5 ++++- 5 files changed, 12 insertions(+), 11 deletions(-)
Title: Quantitative Analysis of Textual Data
Description: A fast, flexible, and comprehensive framework for
quantitative text analysis in R. Provides functionality for corpus management,
creating and manipulating tokens and ngrams, exploring keywords in context,
forming and manipulating sparse matrices
of documents by features and feature co-occurrences, analyzing keywords, computing feature similarities and
distances, applying content dictionaries, applying supervised and unsupervised machine learning,
visually representing text and text analyses, and more.
Author: Kenneth Benoit [cre, aut, cph]
(<https://orcid.org/0000-0002-0797-564X>),
Kohei Watanabe [aut] (<https://orcid.org/0000-0001-6519-5265>),
Haiyan Wang [aut] (<https://orcid.org/0000-0003-4992-4311>),
Paul Nulty [aut] (<https://orcid.org/0000-0002-7214-4666>),
Adam Obeng [aut] (<https://orcid.org/0000-0002-2906-4775>),
Stefan Müller [aut] (<https://orcid.org/0000-0002-6315-4125>),
Akitaka Matsuo [aut] (<https://orcid.org/0000-0002-3323-6330>),
Jiong Wei Lua [aut],
Patrick O. Perry [aut] (<https://orcid.org/0000-0001-7460-127X>),
Jouni Kuha [aut] (<https://orcid.org/0000-0002-1156-8465>),
Benjamin Lauderdale [aut] (<https://orcid.org/0000-0003-3090-0969>),
William Lowe [aut] (<https://orcid.org/0000-0002-1549-6163>),
Christian Müller [ctb],
Lori Young [dtc] (Lexicoder Sentiment Dictionary 2015),
Stuart Soroka [dtc] (Lexicoder Sentiment Dictionary 2015),
Ian Fellows [cph] (authored wordcloud C source code (modified)),
European Research Council [fnd] (ERC-2011-StG 283794-QUANTESS)
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda versions 1.3.14 dated 2018-11-19 and 1.4.0 dated 2019-01-30
DESCRIPTION | 48 MD5 | 455 ++++---- NAMESPACE | 9 NEWS.md | 72 - R/RcppExports.R | 32 R/View.R | 5 R/bootstrap_dfm.R | 44 R/casechange-functions.R | 32 R/character-methods.R | 4 R/convert.R | 44 R/corpus-methods-base.R | 8 R/corpus.R | 6 R/corpus_reshape.R | 12 R/corpus_sample.R | 19 R/corpus_segment.R | 14 R/corpus_trim.R | 16 R/data-documentation.R | 62 - R/dfm-classes.R | 40 R/dfm-methods.R | 36 R/dfm-print.R | 2 R/dfm-subsetting.R | 6 R/dfm.R | 329 +++--- R/dfm_compress.R | 27 R/dfm_group.R | 107 - R/dfm_lookup.R | 120 +- R/dfm_match.R |only R/dfm_replace.R | 34 R/dfm_sample.R | 10 R/dfm_select.R | 59 - R/dfm_sort.R | 8 R/dfm_subset.R | 16 R/dfm_trim.R | 24 R/dfm_weight.R | 93 - R/dictionaries.R | 704 ++++++------ R/dimnames.R |only R/docnames.R | 25 R/fcm-classes.R | 1 R/fcm-methods.R | 41 R/fcm-subsetting.R | 6 R/fcm.R | 52 R/kwic.R | 142 +- R/nfunctions.R | 20 R/pattern2fixed.R | 227 ++-- R/quanteda-documentation.R | 20 R/quanteda_options.R | 12 R/settings.R | 10 R/stopwords.R | 2 R/textmodel_affinity.R | 22 R/textmodel_ca.R | 11 R/textmodel_lsa.R | 29 R/textmodel_nb.R | 36 R/textmodel_wordfish.R | 53 R/textmodel_wordscores.R | 54 R/textplot_influence.R | 6 R/textplot_keyness.R | 18 R/textplot_network.R | 163 +- R/textplot_scale1d.R | 28 R/textplot_wordcloud.R | 20 R/textplot_xray.R | 128 +- R/textstat-methods.R | 6 R/textstat_collocations.R | 18 R/textstat_entropy.R |only R/textstat_frequency.R | 27 R/textstat_keyness.R | 79 - R/textstat_lexdiv.R | 446 ++++++-- R/textstat_readability.R | 820 +++++++++++---- R/textstat_simil.R | 206 ++- R/tokens.R | 588 +++++----- R/tokens_chunk.R |only R/tokens_compound.R | 29 R/tokens_lookup.R | 69 - R/tokens_ngrams.R | 7 R/tokens_replace.R | 98 + R/tokens_segment.R | 60 - R/tokens_select.R | 1 R/tokens_split.R |only R/tokens_subset.R | 14 R/utils.R | 107 + R/wordstem.R | 9 build/vignette.rds |binary data/data_corpus_irishbudget2010.rda |binary inst/WORDLIST | 319 ++++- inst/doc/quickstart.R | 16 inst/doc/quickstart.Rmd | 16 inst/doc/quickstart.html | 448 ++++---- man/as.dictionary.Rd | 45 man/as.tokens.Rd | 32 man/bootstrap_dfm.Rd | 3 man/cbind.dfm.Rd | 24 man/char_tolower.Rd | 6 man/compute_lexdiv_stats.Rd |only man/compute_mattr.Rd |only man/compute_msttr.Rd |only man/convert-wrappers.Rd | 10 man/convert.Rd | 28 man/corpus.Rd | 6 man/corpus_reshape.Rd | 12 man/corpus_sample.Rd | 11 man/corpus_segment.Rd | 16 man/corpus_trim.Rd | 8 man/corpus_trimsentences.Rd | 8 man/data-internal.Rd | 37 man/data_corpus_dailnoconf1991.Rd | 32 man/data_corpus_irishbudget2010.Rd | 13 man/data_dfm_lbgexample.Rd | 8 man/data_dictionary_LSD2015.Rd | 11 man/dfm-class.Rd | 6 man/dfm.Rd | 96 - man/dfm2lsa.Rd | 4 man/dfm_compress.Rd | 32 man/dfm_group.Rd | 16 man/dfm_lookup.Rd | 22 man/dfm_match.Rd |only man/dfm_replace.Rd | 25 man/dfm_sample.Rd | 10 man/dfm_select.Rd | 70 - man/dfm_sort.Rd | 8 man/dfm_split_hyphenated_features.Rd |only man/dfm_subset.Rd | 16 man/dfm_tfidf.Rd | 25 man/dfm_tolower.Rd | 17 man/dfm_trim.Rd | 24 man/dfm_weight.Rd | 45 man/dictionary-class.Rd | 14 man/dictionary.Rd | 22 man/docfreq.Rd | 23 man/docnames.Rd | 16 man/fcm-class.Rd | 6 man/fcm.Rd | 37 man/fcm_sort.Rd | 18 man/featnames.Rd | 8 man/flatten_dictionary.Rd |only man/format_sparsity.Rd | 2 man/influence.predict.textmodel_affinity.Rd | 6 man/is_glob.Rd |only man/is_indexed.Rd | 2 man/keyness.Rd | 12 man/kwic.Rd | 48 man/lowercase_dictionary_values.Rd |only man/merge_dictionary_values.Rd | 8 man/ndoc.Rd | 5 man/nest_dictionary.Rd | 8 man/nfeature.Rd |only man/ntoken.Rd | 8 man/pattern.Rd | 18 man/pattern2id.Rd | 16 man/pattern2list.Rd | 7 man/predict.textmodel_nb.Rd | 6 man/predict.textmodel_wordscores.Rd | 14 man/quanteda-package.Rd | 1 man/read_dict_lexicoder.Rd |only man/read_dict_liwc.Rd | 14 man/read_dict_wordstat.Rd |only man/read_dict_yoshikoder.Rd |only man/reexports.Rd | 2 man/replace_dictionary_values.Rd | 2 man/sample_bygroup.Rd |only man/search_glob.Rd | 19 man/set_dfm_dimnames.Rd |only man/settings.Rd | 10 man/sparsity.Rd | 6 man/split_values.Rd |only man/summary.character.Rd | 2 man/summary.corpus.Rd | 8 man/summary_character.Rd | 4 man/textmodel_affinity.Rd | 10 man/textmodel_ca.Rd | 11 man/textmodel_lsa.Rd | 29 man/textmodel_nb.Rd | 30 man/textmodel_wordfish.Rd | 53 man/textmodel_wordscores.Rd | 40 man/textplot_influence.Rd | 6 man/textplot_keyness.Rd | 18 man/textplot_network.Rd | 20 man/textplot_scale1d.Rd | 26 man/textplot_wordcloud.Rd | 20 man/textplot_xray.Rd | 42 man/textstat_collocations.Rd | 18 man/textstat_entropy.Rd |only man/textstat_frequency.Rd | 27 man/textstat_keyness.Rd | 35 man/textstat_lexdiv.Rd | 149 +- man/textstat_proxy.Rd | 17 man/textstat_readability.Rd | 465 ++++++++ man/textstat_select.Rd | 8 man/textstat_simil.Rd | 33 man/tokens.Rd | 97 - man/tokens_chunk.Rd |only man/tokens_compound.Rd | 31 man/tokens_lookup.Rd | 32 man/tokens_ngrams.Rd | 7 man/tokens_replace.Rd | 47 man/tokens_segment.Rd | 23 man/tokens_select.Rd | 3 man/tokens_split.Rd |only man/tokens_subset.Rd | 14 man/topfeatures.Rd | 16 src/RcppExports.cpp | 92 + src/collocations_mt_.cpp | 48 src/simil_mt.cpp | 151 +- src/tokens_chunk_mt.cpp |only src/tokens_compound_mt.cpp | 25 src/tokens_lookup_mt.cpp | 27 src/tokens_replace_mt.cpp |only src/tokens_segment_mt.cpp | 2 tests/data_creation/create_data_corpus_irishbudget2010.R |only tests/spelling.R |only tests/testthat/test-as.dictionary.R | 38 tests/testthat/test-bootstrap.R | 78 - tests/testthat/test-corpus.R | 5 tests/testthat/test-corpus_sample.R | 15 tests/testthat/test-default-methods.R | 2 tests/testthat/test-dfm.R | 429 ++++--- tests/testthat/test-dfm_compress.R | 36 tests/testthat/test-dfm_group.R | 20 tests/testthat/test-dfm_match.R |only tests/testthat/test-dfm_replace.R | 18 tests/testthat/test-dfm_trim.R | 4 tests/testthat/test-dictionaries.R | 43 tests/testthat/test-docnames.R | 53 tests/testthat/test-fcm.R | 38 tests/testthat/test-fcm_methods.R | 5 tests/testthat/test-kwic.R | 215 ++- tests/testthat/test-nfunctions.R | 5 tests/testthat/test-pattern2fixed.R | 103 + tests/testthat/test-quanteda_options.R | 19 tests/testthat/test-textmodel_wordfish.R | 2 tests/testthat/test-textplot.R | 230 ++-- tests/testthat/test-textplot_network.R | 3 tests/testthat/test-textstat.R | 5 tests/testthat/test-textstat_dist_old.R | 2 tests/testthat/test-textstat_entropy.R |only tests/testthat/test-textstat_lexdiv.R | 294 ++++- tests/testthat/test-textstat_proxy.R | 156 +- tests/testthat/test-textstat_readability.R | 16 tests/testthat/test-textstat_simil.R | 241 ++++ tests/testthat/test-tokens.R | 90 + tests/testthat/test-tokens_chunk.R |only tests/testthat/test-tokens_group.R | 2 tests/testthat/test-tokens_replace.R | 169 ++- tests/testthat/test-tokens_segment.R | 3 tests/testthat/test-tokens_split.R |only tests/testthat/test-utils.R | 39 vignettes/quickstart.Rmd | 16 244 files changed, 7416 insertions(+), 4754 deletions(-)
Title: Multivariate Normality Tests
Description: Performs multivariate normality tests and graphical approaches and
implements multivariate outlier detection and univariate normality of marginal
distributions through plots and tests, and performs multivariate Box-Cox transformation
(Korkmaz et al, (2014), <https://journal.r-project.org/archive/2014-2/korkmaz-goksuluk-zararsiz.pdf>).
Author: Selcuk Korkmaz [aut, cre],
Dincer Goksuluk [aut],
Gokmen Zararsiz [aut]
Maintainer: Selcuk Korkmaz <selcukorkmaz@gmail.com>
Diff between MVN versions 5.5 dated 2018-06-14 and 5.6 dated 2019-01-30
DESCRIPTION | 18 +++++---- MD5 | 18 ++++----- NAMESPACE | 1 R/mvn.R | 98 ++++++++++++++++++++++++++++++++++++++++++++++------- build/vignette.rds |binary inst/doc/MVN.R | 8 ++-- inst/doc/MVN.Rnw | 14 +++---- inst/doc/MVN.pdf |binary man/mvn.Rd | 21 +++++++---- vignettes/MVN.Rnw | 14 +++---- 10 files changed, 137 insertions(+), 55 deletions(-)
Title: Estimation of the Relative Importance of Factors Affecting
Species Distribution Based on Stability Concept
Description: From output files obtained from the software 'ModestR', the relative contribution of factors to explain species distribution is depicted using several plots. A global geographic raster file for each environmental variable may be also obtained with the mean relative contribution, considering all species present in each raster cell, of the factor to explain species distribution. Finally, for each variable it is also possible to compare the frequencies of any variable obtained in the cells where the species is present with the frequencies of the same variable in the cells of the extent.
Author: Cástor Guisande González
Maintainer: Cástor Guisande González <castor@uvigo.es>
Diff between SPEDInstabR versions 1.7 dated 2018-12-06 and 1.8 dated 2019-01-30
DESCRIPTION | 6 +++--- MD5 | 4 ++-- data/adworld.RData |binary 3 files changed, 5 insertions(+), 5 deletions(-)
Title: Higher Order Inference for Nonlinear Heteroscedastic Models
Description: Likelihood inference based on higher order approximations
for nonlinear models with possibly non constant variance.
Author: S original by Alessandra R. Brazzale <alessandra.brazzale@unipd.it>
and Ruggero Bellio <ruggero.bellio@uniud.it>. R port by Alessandra R.
Brazzale <alessandra.brazzale@unipd.it>, following earlier work by
Douglas Bates.
Maintainer: Alessandra R. Brazzale <alessandra.brazzale@unipd.it>
Diff between nlreg versions 1.2-2.1 dated 2018-04-16 and 1.2-2.2 dated 2019-01-30
nlreg-1.2-2.1/nlreg/man/all.profiles.nlreg.Rd |only nlreg-1.2-2.2/nlreg/CHANGES | 8 ++++++ nlreg-1.2-2.2/nlreg/DESCRIPTION | 10 ++++---- nlreg-1.2-2.2/nlreg/LICENCE | 2 - nlreg-1.2-2.2/nlreg/MD5 | 22 +++++++++-------- nlreg-1.2-2.2/nlreg/NAMESPACE | 1 nlreg-1.2-2.2/nlreg/R/nlreg.R | 21 ++++++++--------- nlreg-1.2-2.2/nlreg/R/zzz.R | 4 +-- nlreg-1.2-2.2/nlreg/build |only nlreg-1.2-2.2/nlreg/man/allProfiles.Rd |only nlreg-1.2-2.2/nlreg/man/allProfiles.nlreg.Rd |only nlreg-1.2-2.2/nlreg/man/fitted.nlreg.Rd | 2 - nlreg-1.2-2.2/nlreg/man/nlreg-package.Rd | 32 ++++++++++++++++++-------- nlreg-1.2-2.2/nlreg/man/profile.nlreg.Rd | 6 ++-- 14 files changed, 66 insertions(+), 42 deletions(-)
Title: Functional Time Series Analysis
Description: Functions for visualizing, modeling, forecasting and hypothesis testing of functional time series.
Author: Rob Hyndman [aut] (<https://orcid.org/0000-0002-2140-5352>),
Han Lin Shang [aut, cre, cph] (<https://orcid.org/0000-0003-1769-6430>)
Maintainer: Han Lin Shang <hanlin.shang@anu.edu.au>
Diff between ftsa versions 5.3 dated 2019-01-03 and 5.4 dated 2019-01-30
ftsa-5.3/ftsa/vignettes/ftsa.tex |only ftsa-5.3/ftsa/vignettes/ftsa_test.tex |only ftsa-5.4/ftsa/ChangeLog | 4 + ftsa-5.4/ftsa/DESCRIPTION | 8 +- ftsa-5.4/ftsa/MD5 | 64 +++++++++----------- ftsa-5.4/ftsa/inst/doc/ftsa.pdf |binary ftsa-5.4/ftsa/inst/doc/ftsa_test.pdf |binary ftsa-5.4/ftsa/man/centre.Rd | 8 +- ftsa-5.4/ftsa/man/diff.fts.Rd | 2 ftsa-5.4/ftsa/man/dynamic_FLR.Rd | 10 +-- ftsa-5.4/ftsa/man/dynupdate.Rd | 4 - ftsa-5.4/ftsa/man/extract.Rd | 6 + ftsa-5.4/ftsa/man/facf.Rd | 2 ftsa-5.4/ftsa/man/fbootstrap.Rd | 2 ftsa-5.4/ftsa/man/forecast.ftsm.Rd | 4 - ftsa-5.4/ftsa/man/forecastfplsr.Rd | 2 ftsa-5.4/ftsa/man/fplsr.Rd | 14 ++-- ftsa-5.4/ftsa/man/ftsm.Rd | 4 - ftsa-5.4/ftsa/man/is.fts.Rd | 38 +++++------ ftsa-5.4/ftsa/man/long_run_covariance_estimation.Rd | 2 ftsa-5.4/ftsa/man/mean.fts.Rd | 16 ++--- ftsa-5.4/ftsa/man/median.fts.Rd | 18 +++-- ftsa-5.4/ftsa/man/pcscorebootstrapdata.Rd | 15 +++- ftsa-5.4/ftsa/man/plot.fm.Rd | 2 ftsa-5.4/ftsa/man/plot.fmres.Rd | 2 ftsa-5.4/ftsa/man/plot.ftsf.Rd | 2 ftsa-5.4/ftsa/man/plot.ftsm.Rd | 2 ftsa-5.4/ftsa/man/plotfplsr.Rd | 2 ftsa-5.4/ftsa/man/quantile.fts.Rd | 2 ftsa-5.4/ftsa/man/residuals.fm.Rd | 3 ftsa-5.4/ftsa/man/sd.fts.Rd | 16 ++--- ftsa-5.4/ftsa/man/summary.fm.Rd | 2 ftsa-5.4/ftsa/man/var.fts.Rd | 16 ++--- ftsa-5.4/ftsa/vignettes/ftsa.Rnw | 12 +-- 34 files changed, 152 insertions(+), 132 deletions(-)
Title: Annotation of Isotopes, Adducts and Fragmentation Adducts for
in-Source LC/MS Metabolomics Data
Description: Annotates data from liquid chromatography coupled to mass spectrometry (LC/MS) metabolomics experiments. Based on a network algorithm (O.Senan, A. Aguilar- Mogas, M. Navarro, O. Yanes, R.Guimerà and M. Sales-Pardo, Metabolomics Conference (2016), Dublin), 'CliqueMS' builds a weighted similarity network where nodes are features and edges are weighted according to the similarity of this features. Then it searches for the most plausible division of the similarity network into cliques (fully connected components). Finally it annotates metabolites within each clique, obtaining for each annotated metabolite the neutral mass and their features, corresponding to isotopes, ionization adducts and fragmentation adducts of that metabolite.
Author: Oriol Senan Campos [aut, cre],
Antoni Aguilar-Mogas [aut],
Jordi Capellades [aut],
Miriam Navarro [aut],
Oscar Yanes [aut],
Roger Guimerà [aut],
Marta Sales-Pardo [aut]
Maintainer: Oriol Senan Campos <oriol.senan@urv.cat>
Diff between cliqueMS versions 0.2.4 dated 2019-01-10 and 0.3.0 dated 2019-01-30
DESCRIPTION | 16 +-- MD5 | 37 ++++--- NAMESPACE | 15 ++- NEWS.md | 13 ++ R/allClasses.R | 73 +++++++++++++- R/buildNetwork.R | 198 +++++++++++++++++++++++++++++++++------- R/findAnnotation.R | 1 R/findCliques.R | 13 +- R/findIsotopes.R | 3 inst/doc/annotate_features.R | 8 + inst/doc/annotate_features.Rmd | 10 +- inst/doc/annotate_features.html | 68 +++++++------ man/anClique.Rd | 24 ---- man/computeCliques.Rd | 2 man/createNetwork.Rd | 15 +-- man/createNetwork.XCMSnExp.Rd |only man/createNetwork.xcmsSet.Rd |only man/createanClique.Rd |only man/createanClique.XCMSnExp.Rd |only man/createanClique.xcmsSet.Rd |only man/getCliques.Rd | 5 - vignettes/annotate_features.Rmd | 10 +- 22 files changed, 365 insertions(+), 146 deletions(-)
Title: Taxonomic Information from Around the Web
Description: Interacts with a suite of web 'APIs' for taxonomic tasks,
such as getting database specific taxonomic identifiers, verifying
species names, getting taxonomic hierarchies, fetching downstream and
upstream taxonomic names, getting taxonomic synonyms, converting
scientific to common names and vice versa, and more.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
Eduard Szoecs [aut],
Zachary Foster [aut],
Zebulun Arendsee [aut],
Carl Boettiger [ctb],
Karthik Ram [ctb],
Ignasi Bartomeus [ctb],
John Baumgartner [ctb],
James O'Donnell [ctb],
Jari Oksanen [ctb],
Bastian Greshake Tzovaras [ctb],
Philippe Marchand [ctb],
Vinh Tran [ctb],
Maëlle Salmon [ctb],
Gaopeng Li [ctb],
rOpenSci [fnd] (https://ropensci.org/)
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between taxize versions 0.9.4 dated 2018-07-24 and 0.9.5 dated 2019-01-30
DESCRIPTION | 23 - LICENSE | 2 MD5 | 578 +++++++++++++++++---------- NAMESPACE | 22 - NEWS.md | 37 + R/apg.R | 13 R/bold_search.R | 8 R/children.R | 16 R/class2tree.R | 5 R/classification.R | 192 +++++--- R/col_children.R | 67 +-- R/col_downstream.R | 64 +- R/comm2sci.R | 20 R/downstream-utils.R | 7 R/downstream.R | 53 +- R/eol_dataobjects.R | 19 R/eol_pages.R | 86 ++-- R/eol_search.R | 14 R/eubon.R | 40 + R/eubon_capabilities.R | 11 R/eubon_children.R | 9 R/eubon_hierarchy.R | 9 R/fungorum.R | 12 R/gbif_helpers.R | 68 --- R/gbif_parse.R | 16 R/get_boldid.R | 20 R/get_colid.R | 29 - R/get_eolid.R | 87 ++-- R/get_gbifid.R | 17 R/get_iucn.R | 30 - R/get_natservid.R | 21 R/get_nbnid.R | 29 - R/get_tolid.R | 19 R/get_tpsid.R | 38 - R/get_tsn.R | 24 - R/get_uid.R | 34 - R/get_wiki.R | 15 R/get_wormsid.R | 19 R/getkey.R | 38 - R/gni_details.R | 46 +- R/gni_parse.R | 36 - R/gni_search.R | 55 +- R/http.R |only R/id2name.R |only R/ion.R | 13 R/iplant_resolve.R | 21 R/ipni_search.R | 98 ++-- R/itis_acceptname.R | 14 R/itis_downstream.R | 7 R/itis_name.R | 8 R/iucn_getname.R | 5 R/iucn_summary.R | 132 ------ R/messages.R |only R/nbn_classification.R | 13 R/nbn_synonyms.R | 2 R/ncbi_get_taxon_summary.R | 10 R/ping.R | 96 ++-- R/resolve.R | 47 +- R/sci2comm.R | 9 R/scrapenames.r | 37 - R/synonyms.R | 15 R/tax_name.R | 6 R/tax_rank.R | 54 +- R/taxize-package.R | 9 R/tnrs.R | 78 +-- R/tnrs_sources.r | 25 - R/tol_id2name.R |only R/tol_resolve.R | 6 R/tp_accnames.R | 2 R/tp_summary.R | 2 R/tpl_families.r | 39 + R/tpl_get.r | 12 R/vascan_search.r | 25 - R/worms_downstream.R |only R/zzz.R | 18 README.md | 69 +-- build/vignette.rds |binary data/rank_ref.RData |binary inst/CITATION | 8 inst/doc/name_cleaning.Rmd | 48 +- inst/doc/name_cleaning.html | 48 +- inst/doc/taxize_vignette.Rmd | 64 +- inst/doc/taxize_vignette.html | 64 +- inst/ignore/rank_ref_script.R |only inst/vign/name_cleaning.md | 48 +- inst/vign/taxize_vignette.md | 64 +- man/apg.Rd | 4 man/bold_search.Rd | 6 man/classification.Rd | 54 +- man/col_children.Rd | 28 - man/col_downstream.Rd | 36 + man/comm2sci.Rd | 13 man/downstream.Rd | 24 - man/eol_dataobjects.Rd | 12 man/eol_pages.Rd | 44 +- man/eol_search.Rd | 5 man/eubon.Rd | 19 man/eubon_capabilities.Rd | 3 man/eubon_children.Rd | 3 man/eubon_hierarchy.Rd | 3 man/fungorum.Rd | 4 man/gbif_name_usage.Rd | 6 man/gbif_parse.Rd | 2 man/get_boldid.Rd | 3 man/get_colid.Rd | 5 man/get_eolid.Rd | 25 - man/get_gbifid.Rd | 1 man/get_ids.Rd | 1 man/get_iucn.Rd | 5 man/get_natservid.Rd | 1 man/get_nbnid.Rd | 2 man/get_tolid.Rd | 1 man/get_tpsid.Rd | 5 man/get_tsn.Rd | 1 man/get_uid.Rd | 1 man/get_wiki.Rd | 1 man/get_wormsid.Rd | 1 man/getkey.Rd | 16 man/gni_details.Rd | 11 man/gni_parse.Rd | 11 man/gni_search.Rd | 41 + man/id2name.Rd |only man/ion.Rd | 2 man/iplant_resolve.Rd | 13 man/ipni_search.Rd | 67 +-- man/itis_acceptname.Rd | 10 man/iucn_summary.Rd | 30 - man/iucn_summary_id-defunct.Rd |only man/lowest_common.Rd | 9 man/nbn_classification.Rd | 6 man/nbn_search.Rd | 1 man/nbn_synonyms.Rd | 3 man/ncbi_get_taxon_summary.Rd | 4 man/ping.Rd | 12 man/rank_ref.Rd | 4 man/resolve.Rd | 31 - man/sci2comm.Rd | 7 man/scrapenames.Rd | 10 man/synonyms.Rd | 6 man/tax_name.Rd | 3 man/tax_rank.Rd | 5 man/taxize-defunct.Rd | 2 man/tnrs.Rd | 11 man/tnrs_sources.Rd | 7 man/tol_resolve.Rd | 6 man/tp_accnames.Rd | 2 man/tp_search.Rd | 6 man/tp_summary.Rd | 2 man/tpl_families.Rd | 16 man/tpl_get.Rd | 2 man/vascan_search.Rd | 9 man/worms_downstream.Rd |only tests/fixtures |only tests/testthat/Rplots.pdf |binary tests/testthat/helper-taxize.R | 14 tests/testthat/test-apgscraping.R | 12 tests/testthat/test-bold_search.R | 15 tests/testthat/test-children.R | 92 ++-- tests/testthat/test-class2tree.R | 37 - tests/testthat/test-classification.R | 132 +++--- tests/testthat/test-col_children.R | 32 - tests/testthat/test-col_downstream.R | 14 tests/testthat/test-col_search.R | 13 tests/testthat/test-comm2sci.R | 6 tests/testthat/test-downstream.R | 54 +- tests/testthat/test-eol_dataobjects.R | 24 - tests/testthat/test-eol_pages.R | 10 tests/testthat/test-eol_ping.R | 1 tests/testthat/test-eol_search.R | 4 tests/testthat/test-eubon.R | 29 - tests/testthat/test-fungorum.R | 36 - tests/testthat/test-gbif_downstream.R | 40 - tests/testthat/test-gbif_parse.R | 7 tests/testthat/test-genbank2uid.R | 47 +- tests/testthat/test-get_boldid.R | 38 - tests/testthat/test-get_colid.R | 33 - tests/testthat/test-get_eolid.R | 6 tests/testthat/test-get_gbifid.R | 55 +- tests/testthat/test-get_ids.R | 49 +- tests/testthat/test-get_natservid.R | 28 - tests/testthat/test-get_tpsid.R | 75 +-- tests/testthat/test-get_tsn.R | 31 - tests/testthat/test-get_uid.R | 73 +-- tests/testthat/test-get_wormsid.R | 51 +- tests/testthat/test-gni_details.R | 14 tests/testthat/test-gni_parse.R | 13 tests/testthat/test-gni_search.R | 14 tests/testthat/test-id2name.R |only tests/testthat/test-ion.R | 49 +- tests/testthat/test-ipni_search.R | 86 ++-- tests/testthat/test-itis_acceptname.R | 14 tests/testthat/test-itis_downstream.R | 11 tests/testthat/test-itis_getrecord.R | 13 tests/testthat/test-itis_hierarchy.R | 14 tests/testthat/test-itis_kingdomnames.R | 23 - tests/testthat/test-itis_lsid.R | 14 tests/testthat/test-itis_native.R | 14 tests/testthat/test-itis_ping.R | 19 tests/testthat/test-itis_refs.R | 10 tests/testthat/test-itis_taxrank.R | 9 tests/testthat/test-itis_terms.R | 18 tests/testthat/test-iucn_getname.R | 23 - tests/testthat/test-iucn_id.R | 10 tests/testthat/test-iucn_summary.R | 63 -- tests/testthat/test-names_list.R | 1 tests/testthat/test-ncbi_children.R | 13 tests/testthat/test-ncbi_get_taxon_summary.R | 24 - tests/testthat/test-ping.R | 91 ++-- tests/testthat/test-plantminer.R | 17 tests/testthat/test-sci2comm.R | 17 tests/testthat/test-synonyms.R | 14 tests/testthat/test-tax_name.R | 95 ++-- tests/testthat/test-tax_rank.R | 20 tests/testthat/test-tnrs.R | 22 - tests/testthat/test-tnrs_sources.R | 9 tests/testthat/test-tol_resolve.R | 6 tests/testthat/test-tp_accnames.R | 19 tests/testthat/test-tp_dist.R | 9 tests/testthat/test-tp_refs.R | 9 tests/testthat/test-tp_search.R | 49 +- tests/testthat/test-tp_summary.R | 10 tests/testthat/test-tp_synonyms.R | 9 tests/testthat/test-vascan_search.r | 14 tests/testthat/test-worms_downstream.R |only tools |only vignettes/name_cleaning.Rmd | 48 +- vignettes/taxize_vignette.Rmd | 64 +- 227 files changed, 3196 insertions(+), 2701 deletions(-)
Title: R Interface to Geochemical Modeling Software
Description: A geochemical modeling program developed by the US Geological
Survey that is designed to perform a wide variety of aqueous geochemical
calculations, including speciation, batch-reaction, one-dimensional
reactive-transport, and inverse geochemical calculations.
Author: S.R. Charlton, D.L. Parkhurst, and C.A.J. Appelo, with contributions
from D. Gillespie for Chipmunk BASIC and S.D. Cohen, A.C. Hindmarsh,
R. Serban, D. Shumaker, and A.G. Taylor for CVODE/SUNDIALS
Maintainer: S.R. Charlton <charlton@usgs.gov>
Diff between phreeqc versions 3.4.9 dated 2018-08-15 and 3.4.10 dated 2019-01-30
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- R/phreeqc.R | 2 +- man/phreeqc-package.Rd | 2 +- src/IPhreeqc.cpp | 32 ++++++++++++++++---------------- src/IPhreeqc.h | 2 +- src/IPhreeqcLib.cpp | 4 +++- src/Version.h | 5 +++-- src/phreeqcpp/PHRQ_io_output.cpp | 10 +++++----- 9 files changed, 41 insertions(+), 38 deletions(-)
Title: Draw Treemaps in 'ggplot2'
Description: Provides 'ggplot2' geoms for drawing treemaps.
Author: David Wilkins <david@wilkox.org>
Maintainer: David Wilkins <david@wilkox.org>
Diff between treemapify versions 2.5.2 dated 2018-10-13 and 2.5.3 dated 2019-01-30
DESCRIPTION | 8 +- MD5 | 14 ++-- NEWS.md | 6 + R/geom_treemap_subgroup_text.R | 5 - build/vignette.rds |binary inst/doc/introduction-to-treemapify.html | 102 ++++++++++++++++++------------- tests/testthat/test_geoms.R | 12 +++ tests/testthat/test_plots.R | 24 +++++++ 8 files changed, 117 insertions(+), 54 deletions(-)
Title: A Tidy Tool for Phylogenetic Tree Data Manipulation
Description: Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.
Author: Guangchuang Yu [aut, cre, cph]
(<https://orcid.org/0000-0002-6485-8781>),
Bradley Jones [ctb],
Zebulun Arendsee [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between tidytree versions 0.2.1 dated 2018-12-19 and 0.2.3 dated 2019-01-30
DESCRIPTION | 6 - MD5 | 22 ++-- NEWS.md | 8 + R/AllGenerics.R | 5 R/offspring.R | 22 ++-- README.md | 20 ++- build/vignette.rds |binary inst/doc/tidytree.R | 53 --------- inst/doc/tidytree.Rmd | 164 ----------------------------- inst/doc/tidytree.html | 268 ------------------------------------------------- man/offspring.Rd | 10 + vignettes/tidytree.Rmd | 164 ----------------------------- 12 files changed, 71 insertions(+), 671 deletions(-)
Title: Analyzing Linguistic Data: A Practical Introduction to
Statistics
Description: Data sets exemplifying statistical methods, and some
facilitatory utility functions used in ``Analyzing Linguistic
Data: A practical introduction to statistics using R'',
Cambridge University Press, 2008.
Author: R. H. Baayen <harald.baayen@uni-tuebingen.de>,
Elnaz Shafaei-Bajestan <elnaz.shafaei-bajestan@uni-tuebingen.de>
Maintainer: R. H. Baayen <harald.baayen@uni-tuebingen.de>
Diff between languageR versions 1.4.1 dated 2013-12-11 and 1.5.0 dated 2019-01-30
DESCRIPTION | 19 +++++----- MD5 | 76 +++++++++++++++++++++---------------------- NAMESPACE | 13 ++++++- R/acf.fnc.R | 12 +++--- R/collin.fnc.R | 2 - R/compare.richness.fnc.R | 40 +++++++++++----------- R/corsup.fnc.R | 8 ++-- R/growth.fnc.R | 4 +- R/growth2vgc.fnc.R | 4 +- R/herdan.fnc.R | 2 - R/item.fnc.R | 2 - R/items.quasif.fnc.R | 2 - R/lmerPlotInt.fnc.R | 36 ++++++++++---------- R/make.reg.fnc.R | 6 +-- R/makeDefaultMatrix.fnc.R | 8 ++-- R/makeSplineData.fnc.R | 4 +- R/mvrnormplot.fnc.R | 16 ++++----- R/pairscor.fnc.R | 38 ++++++++++----------- R/plot.corres.R | 16 ++++----- R/plot.growth.R | 22 ++++++------ R/plotAll.fnc.R | 44 ++++++++++++------------ R/plotLMER.fnc.R | 4 +- R/plotlogistic.fit.fnc.R | 26 +++++++------- R/preparePredictor.fnc.R | 4 +- R/quasiF.fnc.R | 2 - R/quasiFsim.fnc.R | 6 +-- R/shadenormal.fnc.R | 16 ++++----- R/simulateLatinsquare.fnc.R | 24 ++++++------- R/simulateQuasif.fnc.R | 22 ++++++------ R/simulateRegression.fnc.R | 24 ++++++------- R/subjects.latinsquare.fnc.R | 6 +-- R/subjects.quasif.fnc.R | 6 +-- R/text2spc.fnc.R | 4 +- R/xylowess.fnc.R | 10 ++--- man/english.Rd | 7 +-- man/growth-class.Rd | 2 - man/growth.fnc.Rd | 2 - man/head.growth.Rd | 7 ++- man/tail.growth.Rd | 5 ++ 39 files changed, 282 insertions(+), 269 deletions(-)
Title: Fast Robust Moments
Description: Fast, numerically robust computation of weighted moments via 'Rcpp'.
Supports computation on vectors and matrices, and Monoidal append of moments.
Moments and cumulants over running fixed length windows can be computed,
as well as over time-based windows.
Moment computations are via a generalization of Welford's method, as described
by Bennett et. (2009) <doi:10.1109/CLUSTR.2009.5289161>.
Author: Steven E. Pav [aut, cre] (<https://orcid.org/0000-0002-4197-6195>)
Maintainer: Steven E. Pav <shabbychef@gmail.com>
Diff between fromo versions 0.2.0 dated 2019-01-13 and 0.2.1 dated 2019-01-30
fromo-0.2.0/fromo/src/Makevars |only fromo-0.2.1/fromo/ChangeLog | 6 fromo-0.2.1/fromo/DESCRIPTION | 10 fromo-0.2.1/fromo/MD5 | 36 - fromo-0.2.1/fromo/R/fromo.r | 5 fromo-0.2.1/fromo/README.md | 181 ++++--- fromo-0.2.1/fromo/build/vignette.rds |binary fromo-0.2.1/fromo/inst/doc/fromo.pdf |binary fromo-0.2.1/fromo/man/NEWS.Rd | 7 fromo-0.2.1/fromo/src/fromo.cpp | 4 fromo-0.2.1/fromo/src/running.cpp | 1 fromo-0.2.1/fromo/src/running.h | 72 ++- fromo-0.2.1/fromo/src/runningmean.h | 4 fromo-0.2.1/fromo/src/t_running.h | 49 +- fromo-0.2.1/fromo/src/t_runningmean.h | 28 - fromo-0.2.1/fromo/src/welford.h | 100 ++-- fromo-0.2.1/fromo/tests/testthat/test-basic.r | 528 ---------------------- fromo-0.2.1/fromo/tests/testthat/test-monoid.r | 176 ++++++- fromo-0.2.1/fromo/tests/testthat/test-running.r |only fromo-0.2.1/fromo/tests/testthat/test-trunning.r |only fromo-0.2.1/fromo/tools/figure/trun_testing-1.png |only 21 files changed, 475 insertions(+), 732 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-04-09 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-29 2.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-10 0.2.2
2018-01-09 0.2.1
2017-08-31 0.2.0
2016-03-13 0.1.1
2016-03-09 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-14 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-28 0.4.3
2018-01-30 0.4.2
2018-01-09 0.4.1
2017-11-17 0.4.0