Title: Nuclear Penalized Multinomial Regression
Description: Fit multinomial logistic regression with a penalty on the nuclear
norm of the estimated regression coefficient matrix, using proximal
gradient descent. Reference: Powers S, Hastie T and Tibshirani R
(2018) <doi:10.1177/1471082X18777669>.
Author: Scott Powers, Trevor Hastie, Robert Tibshirani
Maintainer: Scott Powers <saberpowers@gmail.com>
Diff between npmr versions 1.1 dated 2016-08-03 and 1.2 dated 2019-02-02
DESCRIPTION | 13 +++++++------ MD5 | 28 ++++++++++++++-------------- man/cv.npmr.Rd | 4 ---- man/logL.Rd | 4 ---- man/npmr.Rd | 4 ---- man/nuclear.Rd | 4 ---- man/objective.Rd | 4 ---- man/objectiveFast.Rd | 4 ---- man/plot.cv.npmr.Rd | 4 ---- man/plot.npmr.Rd | 4 ---- man/predict.cv.npmr.Rd | 4 ---- man/predict.npmr.Rd | 4 ---- man/print.cv.npmr.Rd | 4 ---- man/print.npmr.Rd | 4 ---- man/prox.Rd | 4 ---- 15 files changed, 21 insertions(+), 72 deletions(-)
Title: Deciphering Central Informative Nodes in Network Analysis
Description: Functions for computing, comparing and demonstrating top informative centrality measures within a network.
Author: Minoo Ashtiani [aut, cre],
Mehdi Mirzaie [ctb],
Mohieddin Jafari [ctb]
Maintainer: Minoo Ashtiani <ashtiani.minoo@gmail.com>
Diff between CINNA versions 1.1.51 dated 2019-01-13 and 1.1.52 dated 2019-02-02
DESCRIPTION | 12 ++++++------ MD5 | 4 ++-- inst/doc/CINNA.html | 40 ++++++++++++++++++++-------------------- 3 files changed, 28 insertions(+), 28 deletions(-)
Title: Bayesian Multi-Trait Multi-Environment for Genomic Selection
Analysis
Description: Genomic selection and prediction models with the capacity to use multiple traits and environments, through ready-to-use Bayesian models. It consists a group of functions
that help to create regression models for some genomic models proposed by Montesinos-López, et al. (2016) <doi:10.1534/g3.116.032359>
also in Montesinos-López et al. (2018) <doi:10.1534/g3.118.200728> and Montesinos-López et al. (2018) <doi:10.2134/agronj2018.06.0362>.
Author: Francisco Javier Luna-Vazquez [aut, cre]
(<https://orcid.org/0000-0002-5370-7152>),
Fernando H. Toledo [aut],
Osval Antonio Montesinos-Lopez [aut]
(<https://orcid.org/0000-0002-3973-6547>),
Abelardo Montesinos-Lopez [aut],
Jose Crossa [aut] (<https://orcid.org/0000-0001-9429-5855>)
Maintainer: Francisco Javier Luna-Vazquez <frahik@gmail.com>
Diff between BMTME versions 1.0.4 dated 2019-01-11 and 1.0.5 dated 2019-02-02
DESCRIPTION | 8 +-- MD5 | 37 +++++++------- NAMESPACE | 1 NEWS.md | 9 +++ R/cholesky.R | 8 +-- R/utils.R | 15 ++++- inst/doc/bme.Rmd | 1 inst/doc/bme.html | 118 ++++++++++++++++++++++------------------------ inst/doc/bmors.Rmd | 1 inst/doc/bmors.html | 44 ++++++++--------- inst/doc/bmorsenv.Rmd | 1 inst/doc/bmorsenv.html | 24 ++++----- inst/doc/bmtme.Rmd | 1 inst/doc/bmtme.html | 74 ++++++++++++++-------------- man/cholesky.Rd | 4 + tests/testthat/Rplots.pdf |only vignettes/bme.Rmd | 1 vignettes/bmors.Rmd | 1 vignettes/bmorsenv.Rmd | 1 vignettes/bmtme.Rmd | 1 20 files changed, 178 insertions(+), 172 deletions(-)
Title: Conduct Simulation Studies with a Minimal Amount of Source Code
Description: The simTool package is designed for statistical simulations that
have two components. One component generates the data and the other one
analyzes the data. The main aims of the simTool package are the reduction
of the administrative source code (mainly loops and management code for the
results) and a simple applicability of the package that allows the user to
quickly learn how to work with the simTool package. Parallel computing is
also supported. Finally, convenient functions are provided to summarize the
simulation results.
Author: Marsel Scheer [aut, cre]
Maintainer: Marsel Scheer <scheer@freescience.de>
Diff between simTool versions 1.1.1 dated 2019-01-13 and 1.1.2 dated 2019-02-02
DESCRIPTION | 8 +- MD5 | 20 ++--- NEWS.md | 8 ++ R/eval_tibbles.R | 12 ++- README.md | 8 +- inst/doc/simTool.R | 6 - inst/doc/simTool.Rmd | 18 ++-- inst/doc/simTool.html | 137 ++++++++++++++++++------------------- man/eval_tibbles.Rd | 12 ++- tests/testthat/test_eval_tibbles.R | 7 + vignettes/simTool.Rmd | 18 ++-- 11 files changed, 142 insertions(+), 112 deletions(-)
Title: Bayesian Inference from the Conditional Genetic Stock
Identification Model
Description: Implements Bayesian inference for the conditional genetic
stock identification model. It allows inference of mixed fisheries and also
simulation of mixtures to predict accuracy. A full description of the underlying
methods is available in a recently published article in the
Canadian Journal of Fisheries and Aquatic Sciences: <doi.org/10.1139/cjfas-2018-0016>.
Author: Eric C. Anderson [aut, cre],
Ben Moran [aut]
Maintainer: Eric C. Anderson <eric.anderson@noaa.gov>
Diff between rubias versions 0.1.0 dated 2018-01-29 and 0.2.0 dated 2019-02-02
DESCRIPTION | 13 MD5 | 122 - NAMESPACE | 7 NEWS.md | 36 R/RcppExports.R | 36 R/assess_pb_bias_correction.R | 7 R/assess_reference_loo.R | 9 R/assess_reference_mc.R | 21 R/check_known_collections.R |only R/close_matching_samples.R |only R/count_missing_data.R | 13 R/custom_pi_prior.R |only R/data_conversion.R | 34 R/eca-internal-funcs.R | 79 R/import.R | 2 R/infer_mixture.R | 126 + R/modify-scaled-likelihoods-for-known-mixture-fish.R |only R/rubias.R | 8 R/self_assign.R | 7 R/simulation_pipelines.R | 39 R/utilities.R | 12 R/write_gsi_sim_reference.R | 1 README.md | 1466 +++++++++++----- build/vignette.rds |binary inst/CITATION |only inst/doc/rubias-overview.R | 125 + inst/doc/rubias-overview.Rmd | 238 ++ inst/doc/rubias-overview.html | 1431 ++++++++++----- inst/doc/rubias-underlying-data-structures.R | 4 inst/doc/rubias-underlying-data-structures.Rmd | 4 inst/doc/rubias-underlying-data-structures.html | 321 ++- man/assess_pb_bias_correction.Rd | 5 man/assess_reference_loo.Rd | 9 man/avg_coll2correctRU.Rd | 6 man/bootstrap_rho.Rd | 14 man/check_known_collections.Rd |only man/check_refmix.Rd | 6 man/close_matching_samples.Rd |only man/count_missing_data.Rd | 5 man/custom_pi_prior.Rd |only man/get_ploidy_from_frame.Rd |only man/gprob_sim_gc_missing.Rd | 6 man/gsi_em_1.Rd | 7 man/gsi_mcmc_1.Rd | 11 man/infer_mixture.Rd | 28 man/list_diploid_params.Rd | 1 man/modify_scaled_likelihoods_for_known_mixture_fish.Rd |only man/rcpp_close_matchers.Rd |only man/ref_and_mix_pipeline.Rd | 5 man/simulate_random_samples.Rd | 5 man/tcf2param_list.Rd | 11 src/RcppExports.cpp | 14 src/macros.h | 34 src/rcpp_close_matchers.cpp |only src/rcpp_gprobs.cpp | 6 src/rcpp_per_locus_logls.cpp | 3 src/rcpp_simulation.cpp | 15 src/simple_pi_em.cpp | 7 src/simple_pi_mcmc.cpp | 8 tools/boxplot-pofz-gc-sim-1.png |binary tools/boxplot-pofz-indiv-sim-1.png |binary tools/plot-6-1.png |binary tools/plot-top6-1.png |binary tools/plot-top6-n-1.png |binary tools/unnamed-chunk-4-1.png |only tools/unnamed-chunk-6-1.png |only tools/z-score-density-1.png |binary vignettes/rubias-overview.Rmd | 238 ++ vignettes/rubias-underlying-data-structures.Rmd | 4 69 files changed, 3566 insertions(+), 1043 deletions(-)
Title: Space-Filling Design under Maximin Distance
Description: Constructs a space-filling design under the criterion of maximin distance. Both discrete and continuous versions are provided.
Author: Furong Sun <furongs@vt.edu>, Robert B. Gramacy <rbg@vt.edu>
Maintainer: Furong Sun <furongs@vt.edu>
Diff between maximin versions 1.0-1 dated 2018-10-19 and 1.0-2 dated 2019-02-02
ChangeLog | 8 ++++ DESCRIPTION | 13 +++---- MD5 | 12 +++--- R/maximin.R | 29 ++++++++++++++-- R/maximin_cand.R | 62 +++++++++++++++++++++++++---------- README | 2 - man/maximin.Rd | 96 +++++++++++++++++++++++++++++++++---------------------- 7 files changed, 149 insertions(+), 73 deletions(-)
Title: Import Various Data File Types as a Rectangular Form Using a
File Picker Dialogue Box
Description: Easy data importing for the most frequently used file formats in a 'tibble' form.
Author: JooYoung Seo [aut, cre],
Soyoung Choi [aut]
Maintainer: JooYoung Seo <jooyoung@psu.edu>
Diff between ezpickr versions 0.1.3 dated 2018-12-02 and 1.0.0 dated 2019-02-02
DESCRIPTION | 11 ++-- MD5 | 26 +++++---- NAMESPACE | 1 NEWS.md | 6 ++ R/pick.R | 17 +++++- R/view.R |only README.md | 42 ++++++++++++--- build/vignette.rds |binary inst/NEWS | 6 ++ inst/doc/ezpickr_vignette.R | 23 ++++++-- inst/doc/ezpickr_vignette.Rmd | 53 ++++++++++++++----- inst/doc/ezpickr_vignette.html | 109 +++++++++++++++++++++++++++-------------- man/pick.Rd | 8 ++- man/view.Rd |only vignettes/ezpickr_vignette.Rmd | 53 ++++++++++++++----- 15 files changed, 254 insertions(+), 101 deletions(-)
Title: Implement Material Design in Shiny Applications
Description: Allows shiny developers to incorporate UI elements based on Google's Material design. See <https://material.io/guidelines/> for more information.
Author: Eric Anderson [aut, cre],
Alvin Wang [ctb, cph] (Materialize CSS library),
Alan Chang [ctb, cph] (Materialize CSS library),
Alex Mark [ctb, cph] (Materialize CSS library),
Kevin Louie [ctb, cph] (Materialize CSS library)
Maintainer: Eric Anderson <eric.ray.anderson@gmail.com>
Diff between shinymaterial versions 0.5.3 dated 2018-06-02 and 0.5.4 dated 2019-02-02
shinymaterial-0.5.3/shinymaterial/inst/doc |only shinymaterial-0.5.4/shinymaterial/DESCRIPTION | 8 +- shinymaterial-0.5.4/shinymaterial/MD5 | 25 ++++----- shinymaterial-0.5.4/shinymaterial/R/shiny-material-card.R | 27 ++++++++-- shinymaterial-0.5.4/shinymaterial/R/shiny-material-number-box.R | 7 +- shinymaterial-0.5.4/shinymaterial/R/shiny-material-slider.R | 5 + shinymaterial-0.5.4/shinymaterial/R/update-shiny-material-dropdown.R | 6 +- shinymaterial-0.5.4/shinymaterial/inst/js/shiny-material-dropdown.js | 3 + shinymaterial-0.5.4/shinymaterial/man/material_button.Rd | 3 - shinymaterial-0.5.4/shinymaterial/man/material_card.Rd | 7 ++ shinymaterial-0.5.4/shinymaterial/man/material_number_box.Rd | 7 +- shinymaterial-0.5.4/shinymaterial/man/material_slider.Rd | 7 +- shinymaterial-0.5.4/shinymaterial/man/update_material_dropdown.Rd | 3 - shinymaterial-0.5.4/shinymaterial/tests/app.R | 21 ++++++- 14 files changed, 92 insertions(+), 37 deletions(-)
Title: United States Postal Service API Interface
Description: An interface to the United States Postal Service Post Calc and Zone Calc APIs <https://postcalc.usps.com/>, postal
allows users to find the postage price, delivery day, and other information for packages and envelopes,
as well as to find the postal zone for an origin and a destination zip code pair.
Author: Amanda Dobbyn [aut, cre],
Bernie Gray [ctb]
Maintainer: Amanda Dobbyn <amanda.e.dobbyn@gmail.com>
Diff between postal versions 0.1.0 dated 2018-07-27 and 0.1.1 dated 2019-02-02
DESCRIPTION | 20 +++++--- MD5 | 26 +++++------ NEWS.md | 4 + R/fetch_mail.R | 23 +++++----- R/fetch_zones_five_digit.R | 15 ++---- R/fetch_zones_three_digit.R | 6 +- R/globals.R | 2 R/utils.R | 12 +---- README.md | 87 ++++++++++++++++++++++++-------------- build/vignette.rds |binary inst/doc/getting-zoned.html | 72 ++++++++++++++++++++----------- man/fetch_all.Rd | 5 +- tests/testthat/test_fetch_zones.R | 6 +- tests/testthat/test_utils.R | 2 14 files changed, 161 insertions(+), 119 deletions(-)
Title: Record Linkage in R
Description: Provides functions for linking and de-duplicating data sets.
Methods based on a stochastic approach are implemented as well as
classification algorithms from the machine learning domain.
Author: Andreas Borg <borga@uni-mainz.de>, Murat Sariyar <murat.sariyar@charite.de>
Maintainer: Andreas Borg <borga@uni-mainz.de>
Diff between RecordLinkage versions 0.4-10 dated 2016-07-27 and 0.4-10.1 dated 2019-02-02
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 4 ++++ data/RLdata10000.rda |binary data/RLdata500.rda |binary 5 files changed, 12 insertions(+), 8 deletions(-)
Title: Base Package for Phylogenetic Structures and Comparative Data
Description: Provides a base S4 class for comparative methods, incorporating
one or more trees and trait data.
Author: R Hackathon et al. (alphabetically: Ben Bolker, Marguerite Butler,
Peter Cowan, Damien de Vienne, Dirk Eddelbuettel, Mark Holder, Thibaut
Jombart, Steve Kembel, Francois Michonneau, David Orme, Brian O'Meara,
Emmanuel Paradis, Jim Regetz, Derrick Zwickl)
Maintainer: Francois Michonneau <francois.michonneau@gmail.com>
Diff between phylobase versions 0.8.4 dated 2017-04-21 and 0.8.6 dated 2019-02-02
phylobase-0.8.4/phylobase/tests/testthat/test.badnex.R |only phylobase-0.8.6/phylobase/DESCRIPTION | 9 - phylobase-0.8.6/phylobase/MD5 | 63 ++++------ phylobase-0.8.6/phylobase/NAMESPACE | 5 phylobase-0.8.6/phylobase/NEWS.md | 4 phylobase-0.8.6/phylobase/R/ancestors.R | 6 phylobase-0.8.6/phylobase/R/phylobase-package.R | 2 phylobase-0.8.6/phylobase/R/reorder-methods.R | 11 - phylobase-0.8.6/phylobase/R/treePlot.R | 3 phylobase-0.8.6/phylobase/build/vignette.rds |binary phylobase-0.8.6/phylobase/inst/doc/phylobase.pdf |binary phylobase-0.8.6/phylobase/man/addData-methods.Rd | 8 - phylobase-0.8.6/phylobase/man/ancestors.Rd | 1 phylobase-0.8.6/phylobase/man/edgeLength-methods.Rd | 5 phylobase-0.8.6/phylobase/man/formatData.Rd | 9 - phylobase-0.8.6/phylobase/man/getNode-methods.Rd | 9 - phylobase-0.8.6/phylobase/man/labels-methods.Rd | 7 - phylobase-0.8.6/phylobase/man/multiPhylo-class.Rd | 4 phylobase-0.8.6/phylobase/man/phylobubbles.Rd | 7 - phylobase-0.8.6/phylobase/man/phylomat-class.Rd | 1 phylobase-0.8.6/phylobase/man/plotOneTree.Rd | 4 phylobase-0.8.6/phylobase/man/readNexus.Rd | 14 +- phylobase-0.8.6/phylobase/man/root-methods.Rd | 1 phylobase-0.8.6/phylobase/man/setAs-methods.Rd | 6 phylobase-0.8.6/phylobase/man/tdata-methods.Rd | 5 phylobase-0.8.6/phylobase/man/tip.data.plot.Rd | 4 phylobase-0.8.6/phylobase/man/treePlot-methods.Rd | 5 phylobase-0.8.6/phylobase/tests/test-all.R | 10 + phylobase-0.8.6/phylobase/tests/testthat/test.checkdata.R | 6 phylobase-0.8.6/phylobase/tests/testthat/test.class-phylo4.R | 6 phylobase-0.8.6/phylobase/tests/testthat/test.class-phylo4d.R | 4 phylobase-0.8.6/phylobase/tests/testthat/test.readNCL.R | 4 phylobase-0.8.6/phylobase/tests/testthat/test.setAs-Methods.R | 6 33 files changed, 116 insertions(+), 113 deletions(-)
Title: R Interface to SymPy Computer Algebra System
Description: Access SymPy computer algebra system from R via Jython.
Author: G Grothendieck (SymPy itself is by Ondrej Certik and others),
Contributors: Carlos J. Gil Bellosta
Maintainer: G Grothendieck <ggrothendieck@gmail.com>
Diff between rSymPy versions 0.2-1.1 dated 2010-08-01 and 0.2-1.2 dated 2019-02-02
DESCRIPTION | 11 ++++++----- MD5 |only NAMESPACE |only 3 files changed, 6 insertions(+), 5 deletions(-)
Title: Read and Combine Multiple Data Files
Description: Combine multiple data files from a common directory.
The data files will be read into R and bound together, creating a
single large data.frame. A general function is provided along with
a specific function for data that was collected using the open-source
experiment builder 'OpenSesame' <http://osdoc.cogsci.nl/>.
Author: Pascal J. Kieslich [aut, cre] (<https://orcid.org/0000-0002-0853-9364>),
Felix Henninger [aut] (<https://orcid.org/0000-0002-7730-9511>)
Maintainer: Pascal J. Kieslich <kieslich@psychologie.uni-mannheim.de>
Diff between readbulk versions 1.1.0 dated 2016-10-25 and 1.1.2 dated 2019-02-02
DESCRIPTION | 23 +++++++++++++---------- MD5 | 17 ++++++++++------- NEWS.md | 7 +++++++ R/process_labjs.R |only R/read_bulk.R | 49 +++++++++++++++++++++++++++++++------------------ R/read_opensesame.R | 2 +- README.md | 12 ++++++++++++ inst |only man/process_labjs.Rd |only man/read_bulk.Rd | 5 ++--- man/read_opensesame.Rd | 7 +++---- 11 files changed, 79 insertions(+), 43 deletions(-)
Title: Visualizations of High-Dimensional Data
Description: A collection of various visualizations methods is provided. In the case of exploratory data analysis, 'DataVisualizations' makes it possible to inspect the distribution of each feature of a dataset visually through the combination of four methods. One of these methods is the Pareto density estimation (PDE) of the probability density function (pdf). The visualizations of the distribution of distances using PDE, the scatter-density plot using PDE for two variables, the Shepard density plot as well as the Bland-Altman plot are presented here. With regards to classified high-dimensional data several visualizations are presented, e.g. the heat map and silhouette plot. For a classification of countries, a map of the world or Germany can be visualized. More detailed explanations can be found in the book of Thrun, M.C.:"Projection-Based Clustering through Self-Organization and Swarm Intelligence" (2018) <DOI:10.1007/978-3-658-20540-9>. Furthermore, for categorical features the ABC analysis improved Pie charts, slope charts and fan plots are usable. Additionally, for measurements across a geographic area an easy to use function for a Choropleth map is presented here. The flagship of this package is the mirrored density plot (MD-plot) which is a PDE-optimized violin plot for either classified or non-classified, univariate or multivariate data. The MD-plot is an alternative for the box-and-whisker diagram (box plot) and bean plot.
Author: Michael Thrun [aut, cre, cph],
Felix Pape [aut, rev],
Onno Hansen-Goos [ctr, ctb],
Alfred Ultsch [dtc, ctb]
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between DataVisualizations versions 1.1.4 dated 2018-10-22 and 1.1.5 dated 2019-02-02
DataVisualizations-1.1.4/DataVisualizations/R/BoxplotData.R |only DataVisualizations-1.1.4/DataVisualizations/R/ClassViolinPlot.R |only DataVisualizations-1.1.4/DataVisualizations/R/CrossTablePlot.R |only DataVisualizations-1.1.4/DataVisualizations/R/DualAxisLineChart.R |only DataVisualizations-1.1.4/DataVisualizations/R/InspectScatterOfData.R |only DataVisualizations-1.1.4/DataVisualizations/R/PixelMatrixPlot.R |only DataVisualizations-1.1.4/DataVisualizations/R/ProductRatioPlot.R |only DataVisualizations-1.1.4/DataVisualizations/R/QQplotForStandardization.R |only DataVisualizations-1.1.4/DataVisualizations/R/QQplotWithFit.R |only DataVisualizations-1.1.4/DataVisualizations/R/ShepardDensityPlot.R |only DataVisualizations-1.1.4/DataVisualizations/R/ShepardScatterPlot.R |only DataVisualizations-1.1.4/DataVisualizations/R/SilhouettePlot.R |only DataVisualizations-1.1.4/DataVisualizations/R/fanPlot.R |only DataVisualizations-1.1.4/DataVisualizations/R/nanPlot.R |only DataVisualizations-1.1.4/DataVisualizations/R/pieChart.R |only DataVisualizations-1.1.4/DataVisualizations/R/plot3D.R |only DataVisualizations-1.1.4/DataVisualizations/R/plotChoroplethMap.R |only DataVisualizations-1.1.4/DataVisualizations/R/plotWorldmap.R |only DataVisualizations-1.1.4/DataVisualizations/R/slopeChart.R |only DataVisualizations-1.1.4/DataVisualizations/man/BoxplotData.Rd |only DataVisualizations-1.1.4/DataVisualizations/man/ClassViolinPlot.Rd |only DataVisualizations-1.1.4/DataVisualizations/man/CrossTablePlot.Rd |only DataVisualizations-1.1.4/DataVisualizations/man/DrawWorldWithCls.Rd |only DataVisualizations-1.1.4/DataVisualizations/man/DualAxisLineChart.Rd |only DataVisualizations-1.1.4/DataVisualizations/man/InspectScatterOfData.Rd |only DataVisualizations-1.1.4/DataVisualizations/man/PixelMatrixPlot.Rd |only DataVisualizations-1.1.4/DataVisualizations/man/ProductRatioPlot.Rd |only DataVisualizations-1.1.4/DataVisualizations/man/QQplotForStandardization.Rd |only DataVisualizations-1.1.4/DataVisualizations/man/QQplotWithFit.Rd |only DataVisualizations-1.1.4/DataVisualizations/man/ShepardDensityPlot.Rd |only DataVisualizations-1.1.4/DataVisualizations/man/ShepardScatterPlot.Rd |only DataVisualizations-1.1.4/DataVisualizations/man/SilhouettePlot.Rd |only DataVisualizations-1.1.4/DataVisualizations/man/fanPlot.Rd |only DataVisualizations-1.1.4/DataVisualizations/man/nanPlot.Rd |only DataVisualizations-1.1.4/DataVisualizations/man/pieChart.Rd |only DataVisualizations-1.1.4/DataVisualizations/man/plot3D.Rd |only DataVisualizations-1.1.4/DataVisualizations/man/plotChoroplethMap.Rd |only DataVisualizations-1.1.4/DataVisualizations/man/plotWorldmap.Rd |only DataVisualizations-1.1.4/DataVisualizations/man/slopeChart.Rd |only DataVisualizations-1.1.5/DataVisualizations/DESCRIPTION | 12 DataVisualizations-1.1.5/DataVisualizations/MD5 | 119 +-- DataVisualizations-1.1.5/DataVisualizations/NAMESPACE | 49 - 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More information about DataVisualizations at CRAN
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Title: Airborne LiDAR Data Manipulation and Visualization for Forestry
Applications
Description: Airborne LiDAR (Light Detection and Ranging) interface for data
manipulation and visualization. Read/write 'las' and 'laz' files, computation
of metrics in area based approach, point filtering, artificial point reduction,
classification from geographic data, normalization, individual tree segmentation
and other manipulations.
Author: Jean-Romain Roussel [aut, cre, cph],
David Auty [aut, ctb] (Reviews the documentation),
Florian De Boissieu [ctb] (Fixed bugs and improved catalog features),
Andrew Sánchez Meador [ctb] (Implemented lassnags)
Maintainer: Jean-Romain Roussel <jean-romain.roussel.1@ulaval.ca>
Diff between lidR versions 2.0.0 dated 2019-01-02 and 2.0.1 dated 2019-02-02
lidR-2.0.0/lidR/tests/testthat/test-lasaggregate.R |only lidR-2.0.1/lidR/DESCRIPTION | 8 - lidR-2.0.1/lidR/MD5 | 54 +++++----- lidR-2.0.1/lidR/NEWS.md | 15 ++ lidR-2.0.1/lidR/R/LASmethods-LAS.r | 4 lidR-2.0.1/lidR/R/LASmethods-LAScatalog.r | 20 ++- lidR-2.0.1/lidR/R/LASmethods-LASheader.r | 2 lidR-2.0.1/lidR/R/algo_spatial_interpolations.r | 4 lidR-2.0.1/lidR/R/grid_metrics3d.r | 8 - lidR-2.0.1/lidR/R/grid_terrain.r | 2 lidR-2.0.1/lidR/R/lascheck.r | 51 +++++++-- lidR-2.0.1/lidR/R/lasmetrics.r | 2 lidR-2.0.1/lidR/R/lasnormalize.r | 49 +++++---- lidR-2.0.1/lidR/R/utils_metrics.r | 24 +--- lidR-2.0.1/lidR/R/utils_misc.r | 33 ++++-- lidR-2.0.1/lidR/R/zzz.r | 3 lidR-2.0.1/lidR/inst/doc/lidR-LAS-class.html | 7 - lidR-2.0.1/lidR/inst/doc/lidR-LAScatalog-class.html | 3 lidR-2.0.1/lidR/inst/doc/lidR-computation-speed-LAScatalog.html | 2 lidR-2.0.1/lidR/man/grid_metrics3d.Rd | 8 - lidR-2.0.1/lidR/man/knnidw.Rd | 2 lidR-2.0.1/lidR/man/lasmetrics.Rd | 2 lidR-2.0.1/lidR/man/lasnormalize.Rd | 12 +- lidR-2.0.1/lidR/man/stdmetrics.Rd | 10 - lidR-2.0.1/lidR/man/tin.Rd | 2 lidR-2.0.1/lidR/src/C_knn.cpp | 2 lidR-2.0.1/lidR/tests/testthat/Rplots.pdf |only lidR-2.0.1/lidR/tests/testthat/test-grid_terrain.R | 4 lidR-2.0.1/lidR/tests/testthat/test-stdmetric.R | 2 29 files changed, 203 insertions(+), 132 deletions(-)
Title: Supporting Graphs for Analysing Time Series
Description: Provides 'ggplot2' graphics for analysing time
series data. It aims to fit into the 'tidyverse' and grammar of
graphics framework for handling temporal data.
Author: Earo Wang [aut, cre] (<https://orcid.org/0000-0001-6448-5260>),
Di Cook [aut, ths] (<https://orcid.org/0000-0002-3813-7155>),
Rob Hyndman [aut, ths] (<https://orcid.org/0000-0002-2140-5352>)
Maintainer: Earo Wang <earo.wang@gmail.com>
Diff between sugrrants versions 0.2.1 dated 2018-11-28 and 0.2.2 dated 2019-02-02
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NAMESPACE | 2 ++ NEWS.md | 6 ++++++ R/facet-calendar.R | 24 +++++++++++++----------- R/frame-calendar.R | 4 ++-- build/vignette.rds |binary inst/doc/frame-calendar.html | 24 +++++++++++++++++++++++- man/facet-calendar.Rd | 5 +++-- 9 files changed, 60 insertions(+), 27 deletions(-)
Title: Find, Map, and Gather Environmental Data and Metadata
Description: A tool for locating, mapping, and gathering environmental data and metadata, worldwide. Users can search for and filter metadata from > 157,000 environmental monitoring stations among 219 countries/territories and >20 networks/organizations via elevation, location, active dates, elements measured (e.g., temperature, precipitation), country, network, and/or known identifier. Future updates to the package will allow the user to obtain datasets from stations within the database.
Author: Josh Roberti [aut, cre],
Cody Flagg [aut],
Lee Stanish [aut],
Robert Lee [aut]
Maintainer: Josh Roberti <jaroberti87@gmail.com>
Diff between metScanR versions 1.2.1 dated 2019-01-30 and 1.2.2 dated 2019-02-02
DESCRIPTION | 11 +++--- MD5 | 24 +++++++------- NEWS.md | 11 ++++++ R/getNearby.R | 5 +-- R/getNetwork.R | 8 ++-- R/getTerritory.R | 2 - R/getVars.R | 1 R/mapSiteFinder.R | 40 +++++++----------------- R/updateDatabase.R | 6 +-- man/getNearby.Rd | 2 - man/getNetwork.Rd | 8 ++-- man/getTerritory.Rd | 2 - tests/testthat/test_mapSiteFinder.R | 60 ++++++++++++++++++++++++++++++++++++ 13 files changed, 115 insertions(+), 65 deletions(-)
Title: Geographically-Weighted Models
Description: In GWmodel, we introduce techniques from a particular branch of spatial statistics,termed geographically-weighted (GW) models. GW models suit situations when data are not described well by some global model, but where there are spatial regions where a suitably localised calibration provides a better description. GWmodel includes functions to calibrate: GW summary statistics, GW principal components analysis, GW discriminant analysis and various forms of GW regression; some of which are provided in basic and robust (outlier resistant) forms.
Author: Binbin Lu[aut], Paul Harris[aut], Martin Charlton[aut], Chris Brunsdon[aut], Tomoki Nakaya[aut], Isabella Gollini[ctb]
Maintainer: Binbin Lu <binbinlu@whu.edu.cn>
Diff between GWmodel versions 2.0-6 dated 2018-08-20 and 2.0-7 dated 2019-02-02
GWmodel-2.0-6/GWmodel/R/gwr.psdm.r |only GWmodel-2.0-7/GWmodel/DESCRIPTION | 8 +++--- GWmodel-2.0-7/GWmodel/MD5 | 20 +++++++-------- GWmodel-2.0-7/GWmodel/NAMESPACE | 2 - GWmodel-2.0-7/GWmodel/R/bw.sel.r | 2 + GWmodel-2.0-7/GWmodel/R/gtwr.R | 13 +++++----- GWmodel-2.0-7/GWmodel/R/gwr.mixed.r | 36 +++++++++++++++++----------- GWmodel-2.0-7/GWmodel/R/gwr.multiscale.R |only GWmodel-2.0-7/GWmodel/R/zzz.r | 2 - GWmodel-2.0-7/GWmodel/inst/CITATION | 4 +-- GWmodel-2.0-7/GWmodel/man/USelect.rd | 3 -- GWmodel-2.0-7/GWmodel/man/gwr.multiscale.rd | 21 ++++++++++------ 12 files changed, 63 insertions(+), 48 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-01 0.1.4
2019-01-30 0.1.3
Title: Partial Least Squares Regression for Generalized Linear Models
Description: Provides (weighted) Partial least squares Regression for generalized linear models and repeated k-fold cross-validation of such models using various criteria. It allows for missing data in the explanatory variables. Bootstrap confidence intervals constructions are also available.
Author: Frederic Bertrand [cre, aut] (<https://orcid.org/0000-0002-0837-8281>),
Myriam Maumy-Bertrand [aut] (<https://orcid.org/0000-0002-4615-1512>)
Maintainer: Frederic Bertrand <frederic.bertrand@math.unistra.fr>
Diff between plsRglm versions 1.2.3 dated 2018-06-11 and 1.2.5 dated 2019-02-02
DESCRIPTION | 21 +- MD5 | 137 ++++++++------- NAMESPACE | 1 NEWS | 2 NEWS.md |only R/PLS_glm.R | 2 R/PLS_glm_formula.R | 20 +- R/PLS_glm_wvc.R | 2 R/signpred.R | 61 +++---- build/vignette.rds |binary data/bordeauxNA.RData |only data/pineNAX21.RData |only inst/CITATION | 2 inst/doc/plsRglm-manual.pdf |binary inst/doc/plsRglm-manual.pdf.asis | 5 inst/doc/plsRglm.pdf |binary inst/doc/plsRglm.pdf.asis | 5 man/PLS_glm_wvc.Rd | 32 +-- man/PLS_lm_wvc.Rd | 15 - man/XpineNAX21.Rd | 4 man/aze.Rd | 2 man/aze_compl.Rd | 116 ++++++------- man/bootpls.Rd | 11 - man/bootplsglm.Rd | 260 +++++++++++++++--------------- man/bordeaux.Rd | 3 man/bordeauxNA.Rd |only man/boxplots.bootpls.Rd | 2 man/coefs.plsR.Rd | 2 man/coefs.plsRglm.Rd | 3 man/coefs.plsRglmnp.Rd | 2 man/coefs.plsRnp.rd | 3 man/confints.bootpls.Rd | 2 man/cv.plsR.Rd | 8 man/cv.plsRglm.Rd | 201 ++++++++++------------- man/cvtable.Rd | 26 +-- man/dicho.Rd | 70 ++++---- man/kfolds2CVinfos_glm.Rd | 48 ++--- man/kfolds2CVinfos_lm.Rd | 29 --- man/kfolds2Chisq.Rd | 33 +-- man/kfolds2Chisqind.Rd | 33 +-- man/kfolds2Mclassed.Rd | 8 man/kfolds2Mclassedind.Rd | 8 man/kfolds2Press.Rd | 24 +- man/kfolds2Pressind.Rd | 24 +- man/kfolds2coeff.Rd | 9 - man/permcoefs.plsR.Rd | 2 man/permcoefs.plsRglm.Rd | 2 man/permcoefs.plsRglmnp.Rd | 2 man/permcoefs.plsRnp.Rd | 2 man/pineNAX21.Rd |only man/plot.table.summary.cv.plsRglmmodel.Rd | 19 -- man/plot.table.summary.cv.plsRmodel.Rd | 12 - man/plots.confints.bootpls.Rd | 8 man/plsR.Rd | 36 +--- man/plsRglm.Rd | 21 +- man/predict.plsRglmmodel.Rd | 9 - man/predict.plsRmodel.Rd | 8 man/print.cv.plsRglmmodel.Rd | 7 man/print.cv.plsRmodel.Rd | 3 man/print.plsRglmmodel.Rd | 4 man/print.plsRmodel.Rd | 4 man/print.summary.plsRglmmodel.Rd | 4 man/print.summary.plsRmodel.Rd | 4 man/simul_data_UniYX.Rd | 14 - man/simul_data_UniYX_binom.Rd | 2 man/simul_data_YX.Rd | 2 man/summary.cv.plsRglmmodel.Rd | 5 man/summary.cv.plsRmodel.Rd | 6 man/tilt.bootpls.Rd | 40 +--- man/tilt.bootplsglm.Rd | 49 ++--- vignettes/plsRglm-manual.pdf.asis | 5 vignettes/plsRglm.pdf.asis | 5 72 files changed, 731 insertions(+), 780 deletions(-)
Title: Conditional Akaike Information Criterion for 'lme4'
Description: Provides functions for the estimation of the conditional Akaike
information in generalized mixed-effect models fitted with (g)lmer()
from 'lme4'.
Author: Benjamin Saefken and David Ruegamer, with contributions from Sonja
Greven and Thomas Kneib
Maintainer: David Ruegamer <david.ruegamer@gmail.com>
Diff between cAIC4 versions 0.6 dated 2018-11-11 and 0.7 dated 2019-02-02
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NAMESPACE | 1 + R/helperfuns_stepcAIC.R | 38 ++++++++++++++++++++++++++++++++++---- R/methods.R | 2 +- R/stepcAIC.R | 5 ++++- build/partial.rdb |binary man/print.cAIC.Rd | 3 +-- man/stepcAIC.Rd | 11 +++++++---- 9 files changed, 60 insertions(+), 24 deletions(-)
Title: Time-Based Rolling Functions
Description: Provides rolling statistical functions based
on date and time windows instead of n-lagged observations.
Author: Michael Schramm [aut, cre] (<https://orcid.org/0000-0003-1876-6592>),
Frank Harrell [ctb]
Maintainer: Michael Schramm <michael.schramm@ag.tamu.edu>
Diff between tbrf versions 0.1.1 dated 2019-01-07 and 0.1.2 dated 2019-02-02
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS.md | 6 ++++++ README.md | 12 ++++++------ build/vignette.rds |binary inst/doc/intro_to_tbrf.html | 4 ++-- man/figures/README-tbr_misc-1.png |binary man/figures/index-unnamed-chunk-3-1.png |binary man/figures/index-unnamed-chunk-5-1.png |binary man/figures/index-unnamed-chunk-6-1.png |binary man/figures/index-unnamed-chunk-7-1.png |binary tests/testthat/test-expectedMessages.R | 14 +++++++------- 12 files changed, 35 insertions(+), 29 deletions(-)
Title: NASA POWER API Client
Description: Client for 'NASA' 'POWER' global meteorology, surface solar
energy and climatology data 'API'. 'POWER' (Prediction Of Worldwide Energy
Resource) data are freely available global meteorology and surface solar
energy climatology data for download with a resolution of 1/2 by 1/2 arc
degree longitude and latitude and are funded through the 'NASA' Earth
Science Directorate Applied Science Program. For more on the data
themselves, a web-based data viewer and web access, please see
<https://power.larc.nasa.gov/>.
Author: Adam H. Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>),
Scott Chamberlain [rev] (<https://orcid.org/0000-0003-1444-9135>),
Hazel Kavili [rev],
Alison Boyer [rev]
Maintainer: Adam H. Sparks <adamhsparks@gmail.com>
Diff between nasapower versions 1.0.4 dated 2019-01-08 and 1.0.5 dated 2019-02-02
nasapower-1.0.4/nasapower/tests/fixtures |only nasapower-1.0.4/nasapower/tests/testthat/helper-nasapower.R |only nasapower-1.0.5/nasapower/DESCRIPTION | 9 ++-- nasapower-1.0.5/nasapower/MD5 | 20 +++-------- nasapower-1.0.5/nasapower/NEWS.md | 8 ++++ nasapower-1.0.5/nasapower/README.md | 3 + nasapower-1.0.5/nasapower/data/parameters.rda |binary nasapower-1.0.5/nasapower/tests/testthat/test-create_icasa.R | 2 - nasapower-1.0.5/nasapower/tests/testthat/test-create_met.R | 2 - nasapower-1.0.5/nasapower/tests/testthat/test-get_power.R | 6 --- 10 files changed, 21 insertions(+), 29 deletions(-)
Title: Process and Analyze Mouse-Tracking Data
Description: Mouse-tracking, the analysis of mouse movements in computerized
experiments, is a method that is becoming increasingly popular in the
cognitive sciences. The mousetrap package offers functions for importing,
preprocessing, analyzing, aggregating, and visualizing mouse-tracking data.
Author: Pascal J. Kieslich [aut, cre] (<https://orcid.org/0000-0002-0853-9364>),
Dirk U. Wulff [aut] (<https://orcid.org/0000-0002-4008-8022>),
Felix Henninger [aut] (<https://orcid.org/0000-0002-7730-9511>),
Jonas M. B. Haslbeck [aut],
Sarah Brockhaus [ctb]
Maintainer: Pascal J. Kieslich <kieslich@psychologie.uni-mannheim.de>
Diff between mousetrap versions 3.1.1 dated 2018-07-06 and 3.1.2 dated 2019-02-02
DESCRIPTION | 26 ++++++++------ MD5 | 77 +++++++++++++++++++++---------------------- NEWS.md | 15 ++++++-- R/cluster.R | 6 +-- R/cluster_k.R | 6 +-- R/distmat.R | 4 +- R/heatmap.R | 50 +++++++++++++-------------- R/import.R | 2 - R/map.R | 6 +-- R/measures.R | 6 +-- R/startupmessage.R | 2 - README.md | 8 ++-- inst |only man/mt_add_trajectory.Rd | 4 +- man/mt_aggregate.Rd | 5 +- man/mt_align.Rd | 7 ++- man/mt_angles.Rd | 3 + man/mt_animate.Rd | 11 +++--- man/mt_check_resolution.Rd | 4 +- man/mt_cluster.Rd | 12 +++--- man/mt_cluster_k.Rd | 16 ++++---- man/mt_derivatives.Rd | 5 +- man/mt_deviations.Rd | 4 +- man/mt_diffmap.Rd | 12 +++--- man/mt_distmat.Rd | 4 +- man/mt_heatmap.Rd | 15 ++++---- man/mt_heatmap_ggplot.Rd | 12 +++--- man/mt_heatmap_raw.Rd | 26 +++++++------- man/mt_import_long.Rd | 6 +-- man/mt_import_mousetrap.Rd | 3 + man/mt_map.Rd | 11 +++--- man/mt_measures.Rd | 6 +-- man/mt_plot.Rd | 12 +++--- man/mt_remap_symmetric.Rd | 3 + man/mt_reshape.Rd | 7 ++- man/mt_scale_trajectories.Rd | 6 +-- man/mt_space_normalize.Rd | 6 +-- man/mt_spatialize.Rd | 4 +- man/mt_time_normalize.Rd | 6 +-- man/read_mt.Rd | 3 + 40 files changed, 223 insertions(+), 198 deletions(-)