Title: Simple, Consistent Wrappers for Common String Operations
Description: A consistent, simple and easy to use set of
wrappers around the fantastic 'stringi' package. All function and
argument names (and positions) are consistent, all functions deal with
"NA"'s and zero length vectors in the same way, and the output from
one function is easy to feed into the input of another.
Author: Hadley Wickham [aut, cre, cph],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between stringr versions 1.3.1 dated 2018-05-10 and 1.4.0 dated 2019-02-09
DESCRIPTION | 30 ++++++++------- MD5 | 61 ++++++++++++++++---------------- NAMESPACE | 3 + NEWS.md | 15 +++++++ R/c.r | 5 ++ R/case.R | 9 ++++ R/detect.r | 72 +++++++++++++++++++++++++++++++++++--- R/interp.R | 2 - R/subset.R | 18 +++++---- R/view.R | 7 +++ README.md | 37 +++++++++++++++---- build/vignette.rds |binary inst/doc/regular-expressions.Rmd | 2 - inst/doc/regular-expressions.html | 36 ++++++++++++++----- inst/doc/stringr.Rmd | 2 - inst/doc/stringr.html | 36 ++++++++++++++----- man/case.Rd | 4 ++ man/figures/logo.png |binary man/modifiers.Rd | 6 +-- man/str_c.Rd | 6 +++ man/str_detect.Rd | 9 ++++ man/str_glue.Rd | 3 + man/str_starts.Rd |only man/str_subset.Rd | 10 ++++- man/str_view.Rd | 3 + man/stringr-package.Rd | 12 +++--- tests/testthat/test-case.R | 4 ++ tests/testthat/test-detect.r | 28 ++++++++++++++ tests/testthat/test-interp.r | 9 ++++ tests/testthat/test-subset.r | 9 ++++ vignettes/regular-expressions.Rmd | 2 - vignettes/stringr.Rmd | 2 - 32 files changed, 344 insertions(+), 98 deletions(-)
Title: Evaluation of Indicator Performances for Assessing Ecosystem
States
Description: An implementation of the 7-step approach suggested by Otto et al.
(2018) <doi:10.1016/j.ecolind.2017.05.045> to validate ecological state indicators
and to select a suite of complimentary and well performing indicators.
This suite can be then used to assess the current state of the system
in comparison to a reference period. However, the tools in this package
are very generic and can be used to test any type of indicator (e.g. social
or economic indicators).
Author: Saskia A. Otto [aut, cre],
Rene Plonus [aut],
Steffen Funk [aut],
Alexander Keth [aut]
Maintainer: Saskia A. Otto <saskia.a.otto@gmail.com>
Diff between INDperform versions 0.1.1 dated 2018-06-28 and 0.2.0 dated 2019-02-09
INDperform-0.1.1/INDperform/tests/testthat/Rplots.pdf |only INDperform-0.2.0/INDperform/DESCRIPTION | 29 INDperform-0.2.0/INDperform/MD5 | 176 ++-- INDperform-0.2.0/INDperform/NAMESPACE | 2 INDperform-0.2.0/INDperform/NEWS.md |only INDperform-0.2.0/INDperform/R/calc_deriv.R | 6 INDperform-0.2.0/INDperform/R/calc_nrmse.R | 199 +++-- INDperform-0.2.0/INDperform/R/calc_pred.R | 4 INDperform-0.2.0/INDperform/R/clust_sc.R | 3 INDperform-0.2.0/INDperform/R/cond_boot.R | 2 INDperform-0.2.0/INDperform/R/data.R | 16 INDperform-0.2.0/INDperform/R/dist_sc.R | 129 --- INDperform-0.2.0/INDperform/R/dist_sc_group.R |only INDperform-0.2.0/INDperform/R/expect_resp.R | 32 INDperform-0.2.0/INDperform/R/helper_plot_diagnostics.R | 113 +- INDperform-0.2.0/INDperform/R/helper_plot_model.R | 161 ++-- INDperform-0.2.0/INDperform/R/helper_plot_spiechart.R | 383 +++++----- INDperform-0.2.0/INDperform/R/merge_models.R | 2 INDperform-0.2.0/INDperform/R/model_gam.R | 11 INDperform-0.2.0/INDperform/R/model_gamm.R | 13 INDperform-0.2.0/INDperform/R/model_trend.R | 6 INDperform-0.2.0/INDperform/R/nrmse.R |only INDperform-0.2.0/INDperform/R/plot_clust_sc.R | 11 INDperform-0.2.0/INDperform/R/plot_diagnostics.R | 12 INDperform-0.2.0/INDperform/R/plot_model.R | 4 INDperform-0.2.0/INDperform/R/plot_spiechart.R | 7 INDperform-0.2.0/INDperform/R/plot_statespace_ch.R | 33 INDperform-0.2.0/INDperform/R/plot_statespace_ed.R | 14 INDperform-0.2.0/INDperform/R/plot_trend.R | 25 INDperform-0.2.0/INDperform/R/scoring.R | 16 INDperform-0.2.0/INDperform/R/select_interaction.R | 7 INDperform-0.2.0/INDperform/R/select_model.R | 4 INDperform-0.2.0/INDperform/R/sort_output_tbl.R | 2 INDperform-0.2.0/INDperform/R/summary_sc.R | 245 ++++-- INDperform-0.2.0/INDperform/R/test_interaction.R | 62 - INDperform-0.2.0/INDperform/README.md | 2 INDperform-0.2.0/INDperform/data/all_results_ex.rda |binary INDperform-0.2.0/INDperform/data/crit_scores_tmpl.rda |binary INDperform-0.2.0/INDperform/data/ind_init_ex.rda |binary INDperform-0.2.0/INDperform/data/merge_models_ex.rda |binary INDperform-0.2.0/INDperform/data/model_gam_ex.rda |binary INDperform-0.2.0/INDperform/data/model_gamm_ex.rda |binary INDperform-0.2.0/INDperform/data/model_trend_ex.rda |binary INDperform-0.2.0/INDperform/man/all_results_ex.Rd | 7 INDperform-0.2.0/INDperform/man/calc_deriv.Rd | 5 INDperform-0.2.0/INDperform/man/calc_nrmse.Rd | 80 +- INDperform-0.2.0/INDperform/man/clust_sc.Rd | 9 INDperform-0.2.0/INDperform/man/cond_boot.Rd | 3 INDperform-0.2.0/INDperform/man/dist_sc.Rd | 17 INDperform-0.2.0/INDperform/man/dist_sc_group.Rd |only INDperform-0.2.0/INDperform/man/expect_resp.Rd | 7 INDperform-0.2.0/INDperform/man/find_id.Rd | 1 INDperform-0.2.0/INDperform/man/ind_init.Rd | 1 INDperform-0.2.0/INDperform/man/merge_models_ex.Rd | 3 INDperform-0.2.0/INDperform/man/model_gam.Rd | 4 INDperform-0.2.0/INDperform/man/model_gam_ex.Rd | 3 INDperform-0.2.0/INDperform/man/model_gamm.Rd | 1 INDperform-0.2.0/INDperform/man/model_gamm_ex.Rd | 3 INDperform-0.2.0/INDperform/man/nrmse.Rd |only INDperform-0.2.0/INDperform/man/plot_clust_sc.Rd | 10 INDperform-0.2.0/INDperform/man/plot_diagnostics.Rd | 1 INDperform-0.2.0/INDperform/man/plot_model.Rd | 1 INDperform-0.2.0/INDperform/man/plot_outline.Rd | 2 INDperform-0.2.0/INDperform/man/plot_spiechart.Rd | 7 INDperform-0.2.0/INDperform/man/plot_statespace_ch.Rd | 1 INDperform-0.2.0/INDperform/man/plot_statespace_ed.Rd | 1 INDperform-0.2.0/INDperform/man/plot_thresh.Rd | 9 INDperform-0.2.0/INDperform/man/scoring.Rd | 6 INDperform-0.2.0/INDperform/man/select_model.Rd | 3 INDperform-0.2.0/INDperform/man/statespace_ch.Rd | 1 INDperform-0.2.0/INDperform/man/statespace_ed.Rd | 1 INDperform-0.2.0/INDperform/man/summary_sc.Rd | 13 INDperform-0.2.0/INDperform/man/test_interaction.Rd | 5 INDperform-0.2.0/INDperform/tests/figs |only INDperform-0.2.0/INDperform/tests/testthat/test_calc_nrmse.R | 135 ++- INDperform-0.2.0/INDperform/tests/testthat/test_clust_sc.R | 2 INDperform-0.2.0/INDperform/tests/testthat/test_dist_sc.R | 22 INDperform-0.2.0/INDperform/tests/testthat/test_dist_sc_group.R |only INDperform-0.2.0/INDperform/tests/testthat/test_model_gam.R | 4 INDperform-0.2.0/INDperform/tests/testthat/test_model_gamm.R | 25 INDperform-0.2.0/INDperform/tests/testthat/test_nrmse.R |only INDperform-0.2.0/INDperform/tests/testthat/test_plots.R | 11 INDperform-0.2.0/INDperform/tests/testthat/test_scoring.R | 41 - INDperform-0.2.0/INDperform/tests/testthat/test_summary_sc.R | 24 84 files changed, 1304 insertions(+), 896 deletions(-)
Title: Develop a 'Telegram Bot' with R
Description: Provides a pure interface for the 'Telegram Bot API' <http://core.telegram.org/bots/api>. In addition to the pure API implementation, it features a number of tools to make the development of 'Telegram' bots with R easy and straightforward, providing an easy-to-use interface that takes some work off the programmer.
Author: Ernest Benedito [aut, cre]
Maintainer: Ernest Benedito <ebeneditos@gmail.com>
Diff between telegram.bot versions 2.2.0 dated 2018-12-01 and 2.3.0 dated 2019-02-09
DESCRIPTION | 8 +++--- MD5 | 28 ++++++++++++------------ NEWS.md | 6 +++++ R/bot.R | 6 ++--- R/commandhandler.R | 2 - R/dispatcher.R | 20 +++++------------ R/updater.R | 10 +++++--- README.md | 14 ++++++------ build/vignette.rds |binary inst/doc/telegrambot-advanced-filters.html | 28 +++++++++++++++++++++--- inst/doc/telegrambot-basic-functionalities.html | 28 +++++++++++++++++++++--- inst/doc/telegrambot-building-a-bot.html | 28 +++++++++++++++++++++--- inst/doc/telegrambot-introduction.html | 28 +++++++++++++++++++++--- inst/doc/telegrambot-set-a-proxy.html | 28 +++++++++++++++++++++--- inst/doc/telegrambot-the-add-operator.html | 28 +++++++++++++++++++++--- 15 files changed, 198 insertions(+), 64 deletions(-)
Title: Damped Anderson Acceleration with Epsilon Monotonicity for
Accelerating EM-Like Monotone Algorithms
Description: Implements the DAAREM method for accelerating the convergence of slow, monotone sequences from smooth, fixed-point iterations such as the EM algorithm. For further details about the DAAREM method. see Henderson, N.C. and Varadhan, R. (2018) <arXiv:1803.06673>.
Author: Nicholas Henderson [cre, aut],
Ravi Varadhan [aut]
Maintainer: Nicholas Henderson <nhender5@jhmi.edu>
Diff between daarem versions 0.2 dated 2018-08-06 and 0.3 dated 2019-02-09
DESCRIPTION | 12 ++++++------ MD5 | 7 ++++--- NEWS |only R/DampingFind.R | 16 ++++++++++++++-- R/daarem.R | 10 +++++----- 5 files changed, 29 insertions(+), 16 deletions(-)
Title: A Statistically Sound 'data.frame' Processor/Conditioner
Description: A 'data.frame' processor/conditioner that prepares real-world data for predictive modeling in a statistically sound manner.
'vtreat' prepares variables so that data has fewer exceptional cases, making
it easier to safely use models in production. Common problems 'vtreat' defends
against: 'Inf', 'NA', too many categorical levels, rare categorical levels, and new
categorical levels (levels seen during application, but not during training). Reference:
"'vtreat': a data.frame Processor for Predictive Modeling", 'Zumel', 'Mount', 2016, DOI:10.5281/zenodo.1173314.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between vtreat versions 1.3.5 dated 2019-01-27 and 1.3.6 dated 2019-02-09
vtreat-1.3.5/vtreat/R/patch_in_frame.R |only vtreat-1.3.5/vtreat/man/patch_in_frame.Rd |only vtreat-1.3.5/vtreat/tests/testthat |only vtreat-1.3.5/vtreat/tests/testthat.R |only vtreat-1.3.6/vtreat/DESCRIPTION | 16 +-- vtreat-1.3.6/vtreat/MD5 | 93 +++++++++--------- vtreat-1.3.6/vtreat/NAMESPACE | 3 vtreat-1.3.6/vtreat/NEWS.md | 6 + vtreat-1.3.6/vtreat/R/cleanTreatment.R | 2 vtreat-1.3.6/vtreat/R/design_missing_Z.R | 31 +++--- vtreat-1.3.6/vtreat/R/patch_columns_into_frame.R |only vtreat-1.3.6/vtreat/R/run_vtreat_tests.R |only vtreat-1.3.6/vtreat/R/vtreat.R | 8 + vtreat-1.3.6/vtreat/README.md | 12 +- vtreat-1.3.6/vtreat/inst/doc/MultiClassVtreat.html | 28 ++++- vtreat-1.3.6/vtreat/inst/doc/SavingTreamentPlans.html | 28 ++++- vtreat-1.3.6/vtreat/inst/doc/VariableImportance.html | 34 +++++- vtreat-1.3.6/vtreat/inst/doc/vtreat.html | 90 ++++++++++------- vtreat-1.3.6/vtreat/inst/doc/vtreatCrossFrames.html | 62 ++++++++---- vtreat-1.3.6/vtreat/inst/doc/vtreatGrouping.html | 28 ++++- vtreat-1.3.6/vtreat/inst/doc/vtreatOverfit.html | 62 ++++++++---- vtreat-1.3.6/vtreat/inst/doc/vtreatRareLevels.html | 28 ++++- vtreat-1.3.6/vtreat/inst/doc/vtreatScaleMode.html | 40 ++++++- vtreat-1.3.6/vtreat/inst/doc/vtreatSignificance.html | 42 ++++++-- vtreat-1.3.6/vtreat/inst/doc/vtreatSplitting.html | 28 ++++- vtreat-1.3.6/vtreat/inst/doc/vtreatVariableTypes.html | 66 ++++++++---- vtreat-1.3.6/vtreat/inst/unit_tests |only vtreat-1.3.6/vtreat/man/designTreatmentsC.Rd | 2 vtreat-1.3.6/vtreat/man/designTreatmentsN.Rd | 2 vtreat-1.3.6/vtreat/man/designTreatmentsZ.Rd | 2 vtreat-1.3.6/vtreat/man/patch_columns_into_frame.Rd |only vtreat-1.3.6/vtreat/man/run_vtreat_tests.Rd |only vtreat-1.3.6/vtreat/tests/run_RUnit_tests.R |only 33 files changed, 503 insertions(+), 210 deletions(-)
Title: Tools for R Markdown to Docx Documents
Description: A set of helper functions for using R Markdown to create documents
in docx format, especially documents for use in a classroom or workshop
setting.
Author: Richard Layton [aut, cre]
Maintainer: Richard Layton <graphdoctor@gmail.com>
Diff between docxtools versions 0.2.0 dated 2018-07-06 and 0.2.1 dated 2019-02-09
DESCRIPTION | 11 +--- MD5 | 30 +++++------ NAMESPACE | 1 NEWS.md | 4 + R/format_engr.R | 4 - README.md | 8 --- build/vignette.rds |binary inst/WORDLIST | 9 +-- inst/doc/numbers-in-engineering-format.R | 65 +++++++++++++++++++++--- inst/doc/numbers-in-engineering-format.Rmd | 62 +++-------------------- inst/doc/numbers-in-engineering-format.html | 74 ++++++++++++---------------- inst/doc/put-workspace-in-docx.Rmd | 3 - inst/doc/put-workspace-in-docx.html | 27 +++++++++- tests/testthat/Rplots.pdf |binary vignettes/numbers-in-engineering-format.Rmd | 62 +++-------------------- vignettes/put-workspace-in-docx.Rmd | 3 - 16 files changed, 166 insertions(+), 197 deletions(-)
Title: Fuzzy Stationary Probabilities from a Sequence of Observations
of an Unknown Markov Chain
Description: An implementation of a method for computing fuzzy numbers representing stationary probabilities of an unknown Markov chain,
from which a sequence of observations along time has been obtained. The algorithm is based on the proposal presented by James Buckley
in his book on Fuzzy probabilities (Springer, 2005), chapter 6. Package 'FuzzyNumbers' is used to represent the output probabilities.
Author: Pablo J. Villacorta <pjvi@decsai.ugr.es>
Maintainer: Pablo J. Villacorta <pjvi@decsai.ugr.es>
Diff between FuzzyStatProb versions 2.0.3 dated 2017-07-21 and 2.0.4 dated 2019-02-09
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- build/vignette.rds |binary 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Spatio-Temporal Model Estimation
Description: Utilities that estimate, predict and cross-validate the
spatio-temporal model developed for MESA Air.
Author: Johan Lindstrom, Adam Szpiro, Paul D. Sampson, Silas Bergen, Assaf P.
Oron
Maintainer: Johan Lindstrom <johanl@maths.lth.se>
Diff between SpatioTemporal versions 1.1.9 dated 2018-06-24 and 1.1.9.1 dated 2019-02-09
DESCRIPTION | 6 MD5 | 32 NAMESPACE | 1 R/STmodel_predict.R | 2 R/SpatioTemporal-package.R | 1 build/vignette.rds |binary data/MCMC.mesa.model.RData |binary data/est.cv.mesa.RData |binary data/est.mesa.model.RData |binary data/mesa.data.raw.RData |binary data/mesa.model.RData |binary data/pred.cv.mesa.RData |binary data/pred.mesa.model.RData |binary inst/doc/ST_intro.R | 1454 ++++++++++++++++----------------- inst/doc/ST_intro.pdf |binary inst/doc/ST_tutorial.R | 1974 ++++++++++++++++++++++----------------------- inst/doc/ST_tutorial.pdf |binary 17 files changed, 1734 insertions(+), 1736 deletions(-)
More information about SpatioTemporal at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-07 0.9.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-29 0.7.5
2017-10-12 0.7.3
2017-06-12 0.7.0
Title: R/GNU Linear Programming Kit Interface
Description: R interface to the GNU Linear Programming Kit.
'GLPK' is open source software for solving large-scale linear programming (LP),
mixed integer linear programming ('MILP') and other related problems.
Author: Stefan Theussl [aut, cre],
Kurt Hornik [aut],
Christian Buchta [ctb],
Florian Schwendinger [ctb],
Heinrich Schuchardt [ctb]
Maintainer: Stefan Theussl <Stefan.Theussl@R-project.org>
Diff between Rglpk versions 0.6-3 dated 2017-05-18 and 0.6-4 dated 2019-02-09
DESCRIPTION | 6 +- MD5 | 13 +++--- R/Rglpk_solve.R | 62 ++++++++++++++++++++---------- inst/CHANGELOG | 5 ++ src/Makevars.win | 2 src/Rglpk_solve.c | 109 +++++++++++++++++++++++++++++------------------------- src/init.c | 104 ++++++++++++++++++++++++++------------------------- tests |only 8 files changed, 170 insertions(+), 131 deletions(-)
Title: Approximate Inclusion Probabilities for Survey Sampling
Description: Approximate joint-inclusion probabilities in Unequal Probability Sampling, or compute Monte Carlo approximations of the first and second-order inclusion probabilities of a general sampling design as in Fattorini (2006) <doi:10.1093/biomet/93.2.269>.
Author: Roberto Sichera [aut, cre]
Maintainer: Roberto Sichera <roberto.sichera@unipa.it>
Diff between jipApprox versions 0.1.1 dated 2018-10-08 and 0.1.2 dated 2019-02-09
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/jip_MonteCarlo.R | 14 +++++++++----- README.md | 2 +- man/jip_MonteCarlo.Rd | 4 +++- 5 files changed, 22 insertions(+), 16 deletions(-)
Title: Miscellaneous Functions for the USGS INL Project Office
Description: A collection of functions for creating high-level graphics,
performing raster-based analysis, processing MODFLOW-based models,
selecting subsets using a genetic algorithm, creating interactive web maps,
accessing color palettes, etc. Used to support packages and scripts written
by researchers at the United States Geological Survey (USGS)
Idaho National Laboratory (INL) Project Office.
Author: Jason C. Fisher [aut, cre] (<https://orcid.org/0000-0001-9032-8912>)
Maintainer: Jason C. Fisher <jfisher@usgs.gov>
Diff between inlmisc versions 0.4.4 dated 2018-11-08 and 0.4.5 dated 2019-02-09
inlmisc-0.4.4/inlmisc/man/figures/table.pdf |only inlmisc-0.4.4/inlmisc/man/figures/table.svg |only inlmisc-0.4.5/inlmisc/DESCRIPTION | 12 - inlmisc-0.4.5/inlmisc/MD5 | 70 +++--- inlmisc-0.4.5/inlmisc/NEWS.md | 23 + inlmisc-0.4.5/inlmisc/R/AddPoints.R | 4 inlmisc-0.4.5/inlmisc/R/BuildVignettes.R | 18 - inlmisc-0.4.5/inlmisc/R/BumpRiverStage.R | 3 inlmisc-0.4.5/inlmisc/R/GetColors.R | 12 - inlmisc-0.4.5/inlmisc/R/GetRegionOfInterest.R | 118 +++++++++- inlmisc-0.4.5/inlmisc/R/Grid2Polygons.R | 80 +++--- inlmisc-0.4.5/inlmisc/R/POSIXct2Character.R | 8 inlmisc-0.4.5/inlmisc/R/PlotGraph.R | 2 inlmisc-0.4.5/inlmisc/R/PlotMap.R | 2 inlmisc-0.4.5/inlmisc/R/PrintTable.R | 161 +++++++++++-- inlmisc-0.4.5/inlmisc/R/RecreateLibrary.R | 6 inlmisc-0.4.5/inlmisc/R/ToScientific.R | 21 + inlmisc-0.4.5/inlmisc/R/sysdata.rda |binary inlmisc-0.4.5/inlmisc/README.md | 4 inlmisc-0.4.5/inlmisc/inst/misc/preamble.tex | 18 - inlmisc-0.4.5/inlmisc/inst/raw/README.md | 17 - inlmisc-0.4.5/inlmisc/inst/raw/cpt/cool.cpt |only inlmisc-0.4.5/inlmisc/inst/raw/cpt/grayC.cpt |only inlmisc-0.4.5/inlmisc/inst/raw/cpt/polar.cpt |only inlmisc-0.4.5/inlmisc/inst/raw/cpt/red2green.cpt |only inlmisc-0.4.5/inlmisc/inst/raw/cpt/seis.cpt |only inlmisc-0.4.5/inlmisc/inst/raw/internal-datasets.R | 244 ++++++++++++--------- inlmisc-0.4.5/inlmisc/man/BuildVignettes.Rd | 20 - inlmisc-0.4.5/inlmisc/man/BumpRiverStage.Rd | 4 inlmisc-0.4.5/inlmisc/man/FindPolyNodes.Rd |only inlmisc-0.4.5/inlmisc/man/GetColors.Rd | 12 - inlmisc-0.4.5/inlmisc/man/GetRegionOfInterest.Rd | 53 +++- inlmisc-0.4.5/inlmisc/man/Grid2Polygons.Rd | 23 + inlmisc-0.4.5/inlmisc/man/POSIXct2Character.Rd | 6 inlmisc-0.4.5/inlmisc/man/PlotMap.Rd | 2 inlmisc-0.4.5/inlmisc/man/PrintTable.Rd | 49 +++- inlmisc-0.4.5/inlmisc/man/ToScientific.Rd | 8 inlmisc-0.4.5/inlmisc/man/figures/table01.pdf |only inlmisc-0.4.5/inlmisc/man/figures/table01.svg |only inlmisc-0.4.5/inlmisc/man/figures/table02.pdf |only inlmisc-0.4.5/inlmisc/man/figures/table02.svg |only inlmisc-0.4.5/inlmisc/man/figures/table03.pdf |only inlmisc-0.4.5/inlmisc/man/figures/table03.svg |only 43 files changed, 667 insertions(+), 333 deletions(-)
Title: Stubbing and Setting Expectations on 'HTTP' Requests
Description: Stubbing and setting expectations on 'HTTP' requests.
Includes tools for stubbing 'HTTP' requests, including expected
request conditions and response conditions. Match on
'HTTP' method, query parameters, request body, headers and
more. Can be used for unit tests or outside of a testing
context.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>),
rOpenSci [fnd] (https://ropensci.org)
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>
Diff between webmockr versions 0.3.0 dated 2019-01-09 and 0.3.4 dated 2019-02-09
webmockr-0.3.0/webmockr/tests/testthat/test-no-cassette-in-use.R |only webmockr-0.3.4/webmockr/DESCRIPTION | 10 - webmockr-0.3.4/webmockr/MD5 | 55 +++--- webmockr-0.3.4/webmockr/NAMESPACE | 2 webmockr-0.3.4/webmockr/NEWS.md | 23 ++ webmockr-0.3.4/webmockr/R/StubRegistry.R | 2 webmockr-0.3.4/webmockr/R/StubbedRequest.R | 25 +- webmockr-0.3.4/webmockr/R/adapter-httr.R | 20 +- webmockr-0.3.4/webmockr/R/defunct.R | 24 +- webmockr-0.3.4/webmockr/R/to_raise.R | 5 webmockr-0.3.4/webmockr/R/to_return.R | 66 ++++--- webmockr-0.3.4/webmockr/R/to_timeout.R | 2 webmockr-0.3.4/webmockr/R/webmockr.R | 7 webmockr-0.3.4/webmockr/R/wi_th.R | 61 ++----- webmockr-0.3.4/webmockr/R/zzz.R | 34 +++ webmockr-0.3.4/webmockr/README.md | 12 - webmockr-0.3.4/webmockr/man/StubbedRequest.Rd | 2 webmockr-0.3.4/webmockr/man/to_return.Rd | 31 ++- webmockr-0.3.4/webmockr/man/to_return_-defunct.Rd |only webmockr-0.3.4/webmockr/man/webmockr-defunct.Rd | 4 webmockr-0.3.4/webmockr/man/webmockr-package.Rd | 2 webmockr-0.3.4/webmockr/man/wi_th.Rd | 24 +- webmockr-0.3.4/webmockr/man/wi_th_-defunct.Rd |only webmockr-0.3.4/webmockr/tests/testthat/httr_obj.rda |only webmockr-0.3.4/webmockr/tests/testthat/test-HttrAdapter.R |only webmockr-0.3.4/webmockr/tests/testthat/test-StubbedRequest.R | 86 +++++++++- webmockr-0.3.4/webmockr/tests/testthat/test-b-no-cassette-in-use.R |only webmockr-0.3.4/webmockr/tests/testthat/test-to_return.R | 8 webmockr-0.3.4/webmockr/tests/testthat/test-to_timeout.R | 3 webmockr-0.3.4/webmockr/tests/testthat/test-wi_th.R | 35 +++- webmockr-0.3.4/webmockr/tests/testthat/test-within_test_that_blocks.R |only webmockr-0.3.4/webmockr/tests/testthat/test-zutils.R | 8 32 files changed, 369 insertions(+), 182 deletions(-)
Title: Detecting Differentially Expressed Genes in Time Course RNA-Seq
Data
Description: A negative binomial mixed-effects (NBME) model to detect
nonparallel differential expression(NPDE) genes and parallel differential
expression(PDE) genes in the time course RNA-seq data.
Author: Fan Gao, Xiaoxiao Sun
Maintainer: Fan Gao <fangaohz@gmail.com>
Diff between timeSeq versions 1.0.3 dated 2017-07-17 and 1.0.4 dated 2019-02-09
timeSeq-1.0.3/timeSeq/man/timeSeq_1.0.3-package.Rd |only timeSeq-1.0.4/timeSeq/DESCRIPTION | 14 timeSeq-1.0.4/timeSeq/MD5 | 40 +- timeSeq-1.0.4/timeSeq/NAMESPACE | 1 timeSeq-1.0.4/timeSeq/R/timeSeq.R | 188 +++++----- timeSeq-1.0.4/timeSeq/R/timeSeq.heatmap.R | 63 +-- timeSeq-1.0.4/timeSeq/R/timeSeq.screeplot.R | 60 ++- timeSeq-1.0.4/timeSeq/R/timeSeq.sort.R | 41 +- timeSeq-1.0.4/timeSeq/build/vignette.rds |binary timeSeq-1.0.4/timeSeq/data/pAbp.RData |binary timeSeq-1.0.4/timeSeq/data/simulate.dt.RData |binary timeSeq-1.0.4/timeSeq/inst/doc/my-vignette.R | 17 timeSeq-1.0.4/timeSeq/inst/doc/my-vignette.Rmd | 200 +++++------ timeSeq-1.0.4/timeSeq/inst/doc/my-vignette.html | 378 ++++++++++++++------- timeSeq-1.0.4/timeSeq/man/pAbp.Rd | 34 - timeSeq-1.0.4/timeSeq/man/simulate.dt.Rd | 34 - timeSeq-1.0.4/timeSeq/man/timeSeq.Rd | 157 ++++---- timeSeq-1.0.4/timeSeq/man/timeSeq.heatmap.Rd | 75 ++-- timeSeq-1.0.4/timeSeq/man/timeSeq.screeplot.Rd | 73 ++-- timeSeq-1.0.4/timeSeq/man/timeSeq.sort.Rd | 77 ++-- timeSeq-1.0.4/timeSeq/man/timeSeq_1.0.4-package.Rd |only timeSeq-1.0.4/timeSeq/vignettes/my-vignette.Rmd | 200 +++++------ 22 files changed, 911 insertions(+), 741 deletions(-)