Sat, 16 Feb 2019

Package netgwas updated to version 1.8.1 with previous version 1.7.0 dated 2018-08-13

Title: Network-Based Genome Wide Association Studies
Description: A multi-core R package that contains a set of tools based on undirected graphical models for accomplishing three important and interrelated goals in genetics: (1) linkage map construction, (2) reconstructing intra- and inter-chromosomal conditional interactions (linkage disequilibrium) networks, and (3) exploring high-dimensional genotype-phenotype network and genotype-phenotype-environment interactions network. We use conditional independence relationships between variables. The netgwas package can deal with biparental inbreeding and outbreeding species with any ploidy level, namely diploid (2 sets of chromosomes), triploid (3 sets of chromosomes), tetraploid (4 sets of chromosomes) and so on. We target on high-dimensional data where number of variables p is larger than number of sample sizes (p >> n). The computations is memory-optimized using the sparse matrix output. The package is implemented the recent developments in Behrouzi and Wit (2017) <doi:10.1111/rssc.12287> and Behrouzi and Wit (2017) <arXiv:1710.01063>. NOTICE proper functionality of 'netgwas' requires that the 'RBGL' package is installed from 'bioconductor'; for installation instruction please refer to the 'RBGL' web page given below.
Author: Pariya Behrouzi <https://orcid.org/0000-0001-6762-5433> and Ernst C. Wit
Maintainer: Pariya Behrouzi <pariya.behrouzi@gmail.com>

Diff between netgwas versions 1.7.0 dated 2018-08-13 and 1.8.1 dated 2019-02-16

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New package mlbgameday with initial version 0.1.4
Package: mlbgameday
Title: Tools to Gather Data from Major League Baseball Advanced Media
Version: 0.1.4
Authors@R: person("Kris", "Eberwein", email = "eberwein@knights.ucf.edu", role = c("aut", "cre"))
Description: Multi-core processing of data from Major League Baseball Advanced Media <http://gd2.mlb.com/components/game/mlb/>. Additional tools to parallel process large data sets and write them to a database.
Depends: R (>= 3.3.0)
Imports: magrittr, xml2, dplyr, stringr, purrr, tidyr, utils, stats, foreach, iterators, parallel, doParallel, DBI
Suggests: testthat, knitr, rmarkdown, ggplot2, RSQLite, dbplyr
License: MIT + file LICENSE
URL: https://github.com/keberwein/mlbgameday
BugReports: https://github.com/keberwein/mlbgameday/issues
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2019-02-16 19:18:45 UTC; mediacenter
Author: Kris Eberwein [aut, cre]
Maintainer: Kris Eberwein <eberwein@knights.ucf.edu>
Repository: CRAN
Date/Publication: 2019-02-16 23:30:08 UTC

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Package optionstrat updated to version 1.1.0 with previous version 1.0.0 dated 2018-12-09

Title: Utilizes the Black-Scholes Option Pricing Model to Perform Strategic Option Analysis and Plot Option Strategies
Description: Utilizes the Black-Scholes-Merton option pricing model to calculate key option analytics and graphical analysis of various option strategies. Provides functions to calculate the option premium and option greeks of European-style options.
Author: John T. Buynak [aut, cre]
Maintainer: John T. Buynak <jbuynak94@gmail.com>

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Package matsbyname updated to version 0.4.10 with previous version 0.4.9 dated 2019-01-25

Title: An Implementation of Matrix Mathematics
Description: An implementation of matrix mathematics wherein operations are performed "by name."
Author: Matthew Heun [aut, cre] (<https://orcid.org/0000-0002-7438-214X>)
Maintainer: Matthew Heun <matthew.heun@me.com>

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Package CuCubes (with last version 0.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-12-09 0.1.0

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Package ezpickr updated to version 1.0.1 with previous version 1.0.0 dated 2019-02-02

Title: Import Various Data File Types as a Rectangular Form Using a File Picker Dialogue Box
Description: Easy data importing for the most frequently used file formats in a 'tibble' form.
Author: JooYoung Seo [aut, cre], Soyoung Choi [aut], hyun seung Lee [ctb], Jonghoen Kim [ctb]
Maintainer: JooYoung Seo <jooyoung@psu.edu>

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Package SignifReg updated to version 1.1 with previous version 1.0 dated 2017-02-01

Title: Consistent Significance Controlled Variable Selection in Linear Regression
Description: Provide consistent significance controlled variable selection procedure with different directions (forward, backward, stepwise) based on diverse criteria (Mallows' Cp, AIC, BIC, adjusted r-square, p-value). The algorithm selects a final model with only significant variables based on a correction choice of False Discovery Rate, Bonferroni, or no correction.
Author: Jongwook Kim, Adriano Zanin Zambom
Maintainer: Jongwook Kim <jongwook226@gmail.com>

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Package ROI.plugin.neos updated to version 0.3-1 with previous version 0.3-0 dated 2018-06-19

Title: 'NEOS' Plug-in for the 'R' Optimization Interface
Description: Enhances the 'R' Optimization Infrastructure ('ROI') package with a connection to the 'neos' server. 'ROI' optimization problems can be directly be sent to the 'neos' server and solution obtained in the typical 'ROI' style.
Author: Ronald Hochreiter [aut], Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>

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Package hoa updated to version 2.1.4.1 with previous version 2.1.4 dated 2015-08-11

Title: Higher Order Likelihood Inference
Description: Performs likelihood-based inference for a wide range of regression models. Provides higher-order approximations for inference based on extensions of saddlepoint type arguments as discussed in the book Applied Asymptotics: Case Studies in Small-Sample Statistics by Brazzale, Davison, and Reid (2007).
Author: R port by Alessandra R. Brazzale <alessandra.brazzale@unipd.it>, following earlier work by Douglas Bates. The function tem is based on work by Anthony Davison <Anthony.Davison@epfl.ch>
Maintainer: Alex-Antoine Fortin <alex@fortin.bio>

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Package ipcwswitch updated to version 1.0.2 with previous version 1.0.1 dated 2018-11-16

Title: Inverse Probability of Censoring Weights to Deal with Treatment Switch in Randomized Clinical Trials
Description: Contains functions for formatting clinical trials data and implementing inverse probability of censoring weights to handle treatment switches when estimating causal treatment effect in randomized clinical trials.
Author: Nathalie Graffeo [aut, cre], Aurelien Latouche [aut], Sylvie Chevret [aut]
Maintainer: Nathalie Graffeo <nathalie.graffeo@univ-amu.fr>

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Package rPref updated to version 1.3 with previous version 1.2 dated 2016-12-18

Title: Database Preferences and Skyline Computation
Description: Routines to select and visualize the maxima for a given strict partial order. This especially includes the computation of the Pareto frontier, also known as (Top-k) Skyline operator (see Börzsönyi, et al. (2001) <doi:10.1109/ICDE.2001.914855>), and some generalizations known as database preferences (see Kießling (2002) <doi:10.1016/B978-155860869-6/50035-4>).
Author: Patrick Roocks <mail@p-roocks.de>
Maintainer: Patrick Roocks <mail@p-roocks.de>

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Package WRSS updated to version 2.2 with previous version 2.1 dated 2019-01-21

Title: Water Resources System Simulator
Description: Water resources system simulator is a tool for simulation and analysis of large-scale water resources systems. 'WRSS' proposes functions and methods for construction, simulation and analysis of primary storage and hydropower water resources features (e.g. reservoirs, aquifers, and etc.) based on Standard Operating Policy (SOP).
Author: Rezgar Arabzadeh; Parisa Aberi; Kaveh Panaghi; Shahab Araghinejad; Majid Montaseri
Maintainer: Rezgar Arabzadeh <rezgararabzadeh@ut.ac.ir>

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Package areaplot updated to version 1.2-1 with previous version 1.2-0 dated 2017-10-18

Title: Plot Stacked Areas and Confidence Bands as Filled Polygons
Description: Plot stacked areas and confidence bands as filled polygons, or add polygons to existing plots. A variety of input formats are supported, including vectors, matrices, data frames, formulas, etc.
Author: Arni Magnusson [aut, cre]
Maintainer: Arni Magnusson <arni.magnusson@ices.dk>

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