Title: Genetic Algorithm for Wind Farm Layout Optimization
Description: The genetic algorithm is designed to optimize small wind farms with
irregular shapes. The algorithm works with a fixed amount of turbines, a fixed
rotor radius and a mean wind speed value for every incoming wind direction.
If required, it can include a terrain effect model which downloads an
'SRTM' elevation model automatically and loads a Corine Land Cover raster,
which has to be downloaded previously. Further information can be found in the
description of the function 'windfarmGA'. To start an optimization run, either the
function 'windfarmGA' or 'genAlgo' can be used. The function 'windfarmGA' checks
the user inputs interactively and then runs the function 'genAlgo'. If the input
parameters are already known, an optimization can be run directly via the function
'genAlgo'. Their output is identical.
Author: Sebastian Gatscha
Maintainer: Sebastian Gatscha <sebastian_gatscha@gmx.at>
Diff between windfarmGA versions 1.2.1 dated 2018-03-24 and 2.2.1 dated 2019-02-18
windfarmGA-1.2.1/windfarmGA/R/GoogleChromePlot.R |only windfarmGA-1.2.1/windfarmGA/R/GooglePlot.R |only windfarmGA-1.2.1/windfarmGA/R/PointToLine2.R |only windfarmGA-1.2.1/windfarmGA/R/WinkelCalc.R |only windfarmGA-1.2.1/windfarmGA/R/eucDist.R |only windfarmGA-1.2.1/windfarmGA/R/readintegerSel.R |only windfarmGA-1.2.1/windfarmGA/R/splitAt.R |only windfarmGA-1.2.1/windfarmGA/R/tess2SPdf.R |only windfarmGA-1.2.1/windfarmGA/man/GoogleChromePlot.Rd |only windfarmGA-1.2.1/windfarmGA/man/GooglePlot.Rd |only windfarmGA-1.2.1/windfarmGA/man/PointToLine2.Rd |only windfarmGA-1.2.1/windfarmGA/man/WinkelCalc.Rd |only windfarmGA-1.2.1/windfarmGA/man/euc.dist.Rd |only windfarmGA-2.2.1/windfarmGA/DESCRIPTION | 30 windfarmGA-2.2.1/windfarmGA/MD5 | 167 +- windfarmGA-2.2.1/windfarmGA/NAMESPACE | 72 windfarmGA-2.2.1/windfarmGA/NEWS.md |only windfarmGA-2.2.1/windfarmGA/R/BaroHoehe.R | 41 windfarmGA-2.2.1/windfarmGA/R/GridFilter.R | 127 - windfarmGA-2.2.1/windfarmGA/R/HexaTex.R | 109 - windfarmGA-2.2.1/windfarmGA/R/InfluPoints.R | 63 windfarmGA-2.2.1/windfarmGA/R/PlotWindfarmGA.R | 114 - windfarmGA-2.2.1/windfarmGA/R/RandomSearch.R |only windfarmGA-2.2.1/windfarmGA/R/RandomSearchPlot.R |only windfarmGA-2.2.1/windfarmGA/R/RandomSearchTurb.R |only windfarmGA-2.2.1/windfarmGA/R/RcppExports.R |only windfarmGA-2.2.1/windfarmGA/R/StartGA.R | 59 windfarmGA-2.2.1/windfarmGA/R/VekWincelCalc.R | 144 - windfarmGA-2.2.1/windfarmGA/R/calculateEn.R | 686 ++++---- windfarmGA-2.2.1/windfarmGA/R/crossover1.R | 237 ++ windfarmGA-2.2.1/windfarmGA/R/fitness.R | 418 ++--- windfarmGA-2.2.1/windfarmGA/R/genAlgo.R | 1272 +++++++++++----- windfarmGA-2.2.1/windfarmGA/R/getRects.R | 33 windfarmGA-2.2.1/windfarmGA/R/heatmapGA.R | 138 + windfarmGA-2.2.1/windfarmGA/R/leafPlot.R | 216 +- windfarmGA-2.2.1/windfarmGA/R/mutation.R | 27 windfarmGA-2.2.1/windfarmGA/R/plotEvolution.R | 72 windfarmGA-2.2.1/windfarmGA/R/plotResults.R | 624 ++++--- windfarmGA-2.2.1/windfarmGA/R/plotWindrose.R | 203 +- windfarmGA-2.2.1/windfarmGA/R/plotbeorwor.R | 41 windfarmGA-2.2.1/windfarmGA/R/plotcloud.R | 209 +- windfarmGA-2.2.1/windfarmGA/R/plotfitnessevolution.R | 107 - windfarmGA-2.2.1/windfarmGA/R/plotparkfitness.R | 394 ++-- windfarmGA-2.2.1/windfarmGA/R/readInteger.R | 35 windfarmGA-2.2.1/windfarmGA/R/selection1.R | 204 +- windfarmGA-2.2.1/windfarmGA/R/trimton.R | 130 - windfarmGA-2.2.1/windfarmGA/R/visibility.R |only windfarmGA-2.2.1/windfarmGA/R/windfarmGA.R | 380 +--- windfarmGA-2.2.1/windfarmGA/R/zzz.R |only windfarmGA-2.2.1/windfarmGA/inst/extdata/resulthex.rda |binary windfarmGA-2.2.1/windfarmGA/inst/extdata/resultrect.rda |binary windfarmGA-2.2.1/windfarmGA/inst/img |only windfarmGA-2.2.1/windfarmGA/man/BaroHoehe.Rd | 11 windfarmGA-2.2.1/windfarmGA/man/GridFilter.Rd | 12 windfarmGA-2.2.1/windfarmGA/man/HexaTex.Rd | 14 windfarmGA-2.2.1/windfarmGA/man/InfluPoints.Rd | 36 windfarmGA-2.2.1/windfarmGA/man/PlotWindfarmGA.Rd | 24 windfarmGA-2.2.1/windfarmGA/man/RandomSearch.Rd |only windfarmGA-2.2.1/windfarmGA/man/RandomSearchPlot.Rd |only windfarmGA-2.2.1/windfarmGA/man/RandomSearchTurb.Rd |only windfarmGA-2.2.1/windfarmGA/man/StartGA.Rd | 8 windfarmGA-2.2.1/windfarmGA/man/VekWinkelCalc.Rd | 40 windfarmGA-2.2.1/windfarmGA/man/calculateEn.Rd | 110 - windfarmGA-2.2.1/windfarmGA/man/cansee.Rd |only windfarmGA-2.2.1/windfarmGA/man/crossover1.Rd | 46 windfarmGA-2.2.1/windfarmGA/man/dup_coords.Rd |only windfarmGA-2.2.1/windfarmGA/man/fitness.Rd | 78 windfarmGA-2.2.1/windfarmGA/man/genAlgo.Rd | 156 + windfarmGA-2.2.1/windfarmGA/man/getDEM.Rd |only windfarmGA-2.2.1/windfarmGA/man/getISO3.Rd |only windfarmGA-2.2.1/windfarmGA/man/getRects.Rd | 16 windfarmGA-2.2.1/windfarmGA/man/heatmapGA.Rd | 10 windfarmGA-2.2.1/windfarmGA/man/interpol_view.Rd |only windfarmGA-2.2.1/windfarmGA/man/isSpatial.Rd |only windfarmGA-2.2.1/windfarmGA/man/leafPlot.Rd | 16 windfarmGA-2.2.1/windfarmGA/man/mutation.Rd | 10 windfarmGA-2.2.1/windfarmGA/man/permutations.Rd |only windfarmGA-2.2.1/windfarmGA/man/plotCloud.Rd | 6 windfarmGA-2.2.1/windfarmGA/man/plotEvolution.Rd | 6 windfarmGA-2.2.1/windfarmGA/man/plotResult.Rd | 18 windfarmGA-2.2.1/windfarmGA/man/plotWindrose.Rd | 30 windfarmGA-2.2.1/windfarmGA/man/plot_farm_3d.Rd |only windfarmGA-2.2.1/windfarmGA/man/plot_viewshed.Rd |only windfarmGA-2.2.1/windfarmGA/man/plotbeorwor.Rd | 2 windfarmGA-2.2.1/windfarmGA/man/plotfitnessevolution.Rd | 5 windfarmGA-2.2.1/windfarmGA/man/plotparkfitness.Rd | 6 windfarmGA-2.2.1/windfarmGA/man/rasterprofile.Rd |only windfarmGA-2.2.1/windfarmGA/man/readintegerSel.Rd | 2 windfarmGA-2.2.1/windfarmGA/man/selection1.Rd | 38 windfarmGA-2.2.1/windfarmGA/man/splitAt.Rd | 2 windfarmGA-2.2.1/windfarmGA/man/tess2SPdf.Rd | 2 windfarmGA-2.2.1/windfarmGA/man/trimton.Rd | 19 windfarmGA-2.2.1/windfarmGA/man/viewTo.Rd |only windfarmGA-2.2.1/windfarmGA/man/viewshed.Rd |only windfarmGA-2.2.1/windfarmGA/man/windata_format.Rd |only windfarmGA-2.2.1/windfarmGA/man/windfarmGA.Rd | 246 --- windfarmGA-2.2.1/windfarmGA/src |only windfarmGA-2.2.1/windfarmGA/tests |only 98 files changed, 4026 insertions(+), 3295 deletions(-)
Title: A Tidy API for Graph Manipulation
Description: A graph, while not "tidy" in itself, can be thought of as two tidy
data frames describing node and edge data respectively. 'tidygraph'
provides an approach to manipulate these two virtual data frames using the
API defined in the 'dplyr' package, as well as provides tidy interfaces to
a lot of common graph algorithms.
Author: Thomas Lin Pedersen [cre, aut]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between tidygraph versions 1.1.1 dated 2018-11-20 and 1.1.2 dated 2019-02-18
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 21 ++++++++++++++++++++- R/morphers.R | 7 +++++-- R/sample_frac.R | 4 ++-- R/sample_n.R | 4 ++-- 6 files changed, 39 insertions(+), 17 deletions(-)
Title: Custom Inputs Widgets for Shiny
Description: Some custom inputs widgets to use in Shiny applications, like a toggle switch to replace checkboxes. And other components to pimp your apps.
Author: Victor Perrier [aut, cre],
Fanny Meyer [aut],
David Granjon [aut] (jQuery Knob shiny interface & sliders appearance),
Ian Fellows [ctb] (Methods for mutating vertical tabs &
updateMultiInput),
Wil Davis [ctb] (numericRangeInput function),
SnapAppointments [cph] (bootstrap-select),
Mattia Larentis [ctb, cph] (Bootstrap Switch),
Emanuele Marchi [ctb, cph] (Bootstrap Switch),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Flatlogic [cph] (Awesome Bootstrap Checkbox),
mouse0270 [ctb, cph] (Material Design Switch),
Tristan Edwards [ctb, cph] (SweetAlert),
Fabian Lindfors [ctb, cph] (multi.js),
Anthony Terrien [ctb, cph] (jQuery Knob),
Daniel Eden [ctb, cph] (animate.css),
Ganapati V S [ctb, cph] (bttn.css),
Brian Grinstead [ctb, cph] (Spectrum),
Lokesh Rajendran [ctb, cph] (pretty-checkbox),
Leon Gersen [ctb, cph] (wnumb & noUiSlider),
Timofey Marochkin [ctb, cph] (air-datepicker),
Tobias Ahlin [ctb, cph] (CSS spin)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between shinyWidgets versions 0.4.4 dated 2018-11-05 and 0.4.5 dated 2019-02-18
shinyWidgets-0.4.4/shinyWidgets/inst/images |only shinyWidgets-0.4.5/shinyWidgets/DESCRIPTION | 13 - shinyWidgets-0.4.5/shinyWidgets/MD5 | 106 +++++---- shinyWidgets-0.4.5/shinyWidgets/NAMESPACE | 6 shinyWidgets-0.4.5/shinyWidgets/NEWS.md | 11 - shinyWidgets-0.4.5/shinyWidgets/R/actionBttn.R | 4 shinyWidgets-0.4.5/shinyWidgets/R/chooseSliderSkin.R | 4 shinyWidgets-0.4.5/shinyWidgets/R/demos.R | 22 ++ shinyWidgets-0.4.5/shinyWidgets/R/input-airDatepicker.R | 37 +-- shinyWidgets-0.4.5/shinyWidgets/R/input-awesomecheckbox.R | 4 shinyWidgets-0.4.5/shinyWidgets/R/input-colorselector.R | 7 shinyWidgets-0.4.5/shinyWidgets/R/input-numericRange.R |only shinyWidgets-0.4.5/shinyWidgets/R/input-pretty.R | 4 shinyWidgets-0.4.5/shinyWidgets/R/module-pickerGroup.R | 4 shinyWidgets-0.4.5/shinyWidgets/R/set-background.R | 14 - shinyWidgets-0.4.5/shinyWidgets/R/sw-dropdown.R | 4 shinyWidgets-0.4.5/shinyWidgets/R/useShinydashboard.R | 2 shinyWidgets-0.4.5/shinyWidgets/R/utils.R | 14 - shinyWidgets-0.4.5/shinyWidgets/R/vertical-tab.R | 107 ++++++++-- shinyWidgets-0.4.5/shinyWidgets/README.md | 29 +- shinyWidgets-0.4.5/shinyWidgets/inst/examples/numericRange |only shinyWidgets-0.4.5/shinyWidgets/inst/www/air-datepicker/i18n/datepicker.ru.js |only shinyWidgets-0.4.5/shinyWidgets/inst/www/awesomeRadioCheckbox/css/awesome-bootstrap-checkbox-shiny.css | 3 shinyWidgets-0.4.5/shinyWidgets/inst/www/numericRange |only shinyWidgets-0.4.5/shinyWidgets/inst/www/searchInput/search-bindings.js | 4 shinyWidgets-0.4.5/shinyWidgets/inst/www/shinyWidgets-bindings.min.js | 2 shinyWidgets-0.4.5/shinyWidgets/inst/www/vertical-tab-panel/vertical-tab-panel-bindings.js | 8 shinyWidgets-0.4.5/shinyWidgets/inst/www/vertical-tab-panel/vertical-tab-panel.css | 13 + shinyWidgets-0.4.5/shinyWidgets/inst/www/vertical-tab-panel/vertical-tab-panel.js | 2 shinyWidgets-0.4.5/shinyWidgets/man/actionBttn.Rd | 2 shinyWidgets-0.4.5/shinyWidgets/man/airDatepicker.Rd | 4 shinyWidgets-0.4.5/shinyWidgets/man/appendVerticalTab.Rd |only shinyWidgets-0.4.5/shinyWidgets/man/chooseSliderSkin.Rd | 4 shinyWidgets-0.4.5/shinyWidgets/man/colorSelectorInput.Rd | 5 shinyWidgets-0.4.5/shinyWidgets/man/demoNumericRange.Rd |only shinyWidgets-0.4.5/shinyWidgets/man/downloadBttn.Rd | 2 shinyWidgets-0.4.5/shinyWidgets/man/dropdown.Rd | 2 shinyWidgets-0.4.5/shinyWidgets/man/figures |only shinyWidgets-0.4.5/shinyWidgets/man/numericRangeInput.Rd |only shinyWidgets-0.4.5/shinyWidgets/man/pickerGroup-module.Rd | 4 shinyWidgets-0.4.5/shinyWidgets/man/setBackgroundImage.Rd | 8 shinyWidgets-0.4.5/shinyWidgets/man/updateAirDateInput.Rd | 4 shinyWidgets-0.4.5/shinyWidgets/man/updateAwesomeCheckboxGroup.Rd | 4 shinyWidgets-0.4.5/shinyWidgets/man/updateNumericRangeInput.Rd |only shinyWidgets-0.4.5/shinyWidgets/man/vertical-tab.Rd | 6 shinyWidgets-0.4.5/shinyWidgets/tests/testthat/test-airdatepicker.R | 14 - shinyWidgets-0.4.5/shinyWidgets/tests/testthat/test-numericRange.R |only 47 files changed, 314 insertions(+), 169 deletions(-)
Title: Loading NONMEM Output Files with Functions for Visual Predictive
Checks (VPC) and Goodness of Fit (GOF) Plots
Description: Loading NONMEM (NONlinear Mixed-Effect Modeling, <http://www.iconplc.com/innovation/solutions/nonmem/>) and PSN (Perl-speaks-NONMEM, <https://uupharmacometrics.github.io/PsN/>) output files to extract parameter estimates, provide visual predictive check (VPC) and goodness of fit (GOF) plots, and simulate with parameter uncertainty.
Author: Magnus Astrand
Maintainer: Magnus Astrand <magnus.astrand@astrazeneca.com>
Diff between nonmem2R versions 0.1.10 dated 2018-09-26 and 0.2.1 dated 2019-02-18
nonmem2R-0.1.10/nonmem2R/R/VPCs.R |only nonmem2R-0.1.10/nonmem2R/R/VPCs_ggplot.R |only nonmem2R-0.2.1/nonmem2R/DESCRIPTION | 21 +-- nonmem2R-0.2.1/nonmem2R/MD5 | 67 +++++++-- nonmem2R-0.2.1/nonmem2R/NAMESPACE | 65 +++++++++ nonmem2R-0.2.1/nonmem2R/NEWS | 38 +++++ nonmem2R-0.2.1/nonmem2R/R/04_GOFs.R |only nonmem2R-0.2.1/nonmem2R/R/GOF.control.R |only nonmem2R-0.2.1/nonmem2R/R/LoadNonmemOutput.R | 152 +++++++++++----------- nonmem2R-0.2.1/nonmem2R/R/geom_and_stats.R |only nonmem2R-0.2.1/nonmem2R/R/qqnorm_geom.R | 98 ++++++++++++++ nonmem2R-0.2.1/nonmem2R/R/vpc_read.R | 11 + nonmem2R-0.2.1/nonmem2R/R/vpcfig.R |only nonmem2R-0.2.1/nonmem2R/R/vpcfig2.R |only nonmem2R-0.2.1/nonmem2R/R/vpcfig3.R |only nonmem2R-0.2.1/nonmem2R/R/vpcfig3subfunc.R |only nonmem2R-0.2.1/nonmem2R/build |only nonmem2R-0.2.1/nonmem2R/inst/doc |only nonmem2R-0.2.1/nonmem2R/inst/extdata/sdtab999 |only nonmem2R-0.2.1/nonmem2R/man/PositionScale.Rd |only nonmem2R-0.2.1/nonmem2R/man/StatCorr.Rd |only nonmem2R-0.2.1/nonmem2R/man/StatDenx.Rd |only nonmem2R-0.2.1/nonmem2R/man/StatDnorm.Rd |only nonmem2R-0.2.1/nonmem2R/man/StatHmean.Rd |only nonmem2R-0.2.1/nonmem2R/man/StatHmedian.Rd |only nonmem2R-0.2.1/nonmem2R/man/StatQQVPC.Rd | 2 nonmem2R-0.2.1/nonmem2R/man/StatQQnorm.Rd | 2 nonmem2R-0.2.1/nonmem2R/man/StatQQrefline.Rd |only nonmem2R-0.2.1/nonmem2R/man/add.caption.Rd |only nonmem2R-0.2.1/nonmem2R/man/basic.GOF4.Rd |only nonmem2R-0.2.1/nonmem2R/man/basic.eta.GOF.Rd |only nonmem2R-0.2.1/nonmem2R/man/do.cat.GOF.Rd |only nonmem2R-0.2.1/nonmem2R/man/do.individual.GOF.Rd |only nonmem2R-0.2.1/nonmem2R/man/do.multi.GOF.Rd |only nonmem2R-0.2.1/nonmem2R/man/do.one.GOF.Rd |only nonmem2R-0.2.1/nonmem2R/man/eta.cov.GOF.Rd |only nonmem2R-0.2.1/nonmem2R/man/get.GOF.dictionary.Rd |only nonmem2R-0.2.1/nonmem2R/man/get.label.Rd |only nonmem2R-0.2.1/nonmem2R/man/get.model.path.Rd |only nonmem2R-0.2.1/nonmem2R/man/histGOF.Rd |only nonmem2R-0.2.1/nonmem2R/man/merge2GOF.Rd |only nonmem2R-0.2.1/nonmem2R/man/position_scale.Rd |only nonmem2R-0.2.1/nonmem2R/man/qqnormGOF.Rd |only nonmem2R-0.2.1/nonmem2R/man/stat_QQrefline.Rd |only nonmem2R-0.2.1/nonmem2R/man/stat_corr.Rd |only nonmem2R-0.2.1/nonmem2R/man/stat_denx.Rd |only nonmem2R-0.2.1/nonmem2R/man/stat_dnorm.Rd |only nonmem2R-0.2.1/nonmem2R/man/stat_hmean.Rd |only nonmem2R-0.2.1/nonmem2R/man/stat_hmedian.Rd |only nonmem2R-0.2.1/nonmem2R/man/systemPSN.Rd | 13 + nonmem2R-0.2.1/nonmem2R/man/vpcfig.Rd | 12 - nonmem2R-0.2.1/nonmem2R/man/vpcfig2.Rd | 22 ++- nonmem2R-0.2.1/nonmem2R/man/vpcfig3.Rd | 24 ++- nonmem2R-0.2.1/nonmem2R/vignettes |only 54 files changed, 401 insertions(+), 126 deletions(-)
Title: North Symbols and Scale Bars for Maps Created with 'ggplot2' or
'ggmap'
Description: Adds north symbols (18 options) and scale bars in kilometers,
meters, nautical miles, or statue miles, to maps in geographic
or metric coordinates created with 'ggplot2' or 'ggmap'.
Author: Oswaldo Santos Baquero [aut, cre]
Maintainer: Oswaldo Santos Baquero <baquero@usp.br>
Diff between ggsn versions 0.4.0 dated 2017-03-20 and 0.5.0 dated 2019-02-18
ggsn-0.4.0/ggsn/inst/extdata |only ggsn-0.5.0/ggsn/DESCRIPTION | 21 +- ggsn-0.5.0/ggsn/MD5 | 35 ++-- ggsn-0.5.0/ggsn/NAMESPACE | 6 ggsn-0.5.0/ggsn/NEWS | 69 +++++++++ ggsn-0.5.0/ggsn/R/blank.R | 28 +-- ggsn-0.5.0/ggsn/R/domestic_violence.R |only ggsn-0.5.0/ggsn/R/ggsn-package.R | 18 +- ggsn-0.5.0/ggsn/R/north.R | 86 ++++------- ggsn-0.5.0/ggsn/R/north2.R | 34 +--- ggsn-0.5.0/ggsn/R/scalebar.R | 235 ++++++++++++++++++++++--------- ggsn-0.5.0/ggsn/data |only ggsn-0.5.0/ggsn/man/blank.Rd | 28 +-- ggsn-0.5.0/ggsn/man/domestic_violence.Rd |only ggsn-0.5.0/ggsn/man/ggsn-package.Rd | 11 - ggsn-0.5.0/ggsn/man/north.Rd | 40 ----- ggsn-0.5.0/ggsn/man/north2.Rd | 23 +-- ggsn-0.5.0/ggsn/man/northSymbols.Rd | 1 ggsn-0.5.0/ggsn/man/scalebar.Rd | 84 ++++++----- 19 files changed, 421 insertions(+), 298 deletions(-)
Title: Modelling Functions that Work with the Pipe
Description: Functions for modelling that help you seamlessly
integrate modelling into a pipeline of data manipulation and
visualisation.
Author: Hadley Wickham [aut, cre],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between modelr versions 0.1.3 dated 2019-02-05 and 0.1.4 dated 2019-02-18
DESCRIPTION | 6 +++--- MD5 | 21 ++++++++++++++------- NEWS.md | 6 ++++++ R/predictions.R | 12 ++++++++++-- README.md | 4 ++-- tests/testthat/test-cross-validate.R |only tests/testthat/test-data-grid.R | 6 ++++++ tests/testthat/test-geom-ref-line.R |only tests/testthat/test-model-matrix.R |only tests/testthat/test-na-warn.R |only tests/testthat/test-predictions.R | 21 +++++++++++++++++++++ tests/testthat/test-resample-partition.R |only tests/testthat/test-resampling.R | 17 +++++++++++++++++ tests/testthat/test-residuals.R |only tests/testthat/test-seq-range.R |only 15 files changed, 79 insertions(+), 14 deletions(-)
Title: Flexible Mixture Modeling
Description: A general framework for finite mixtures of regression
models using the EM algorithm is implemented. The E-step and all
data handling are provided, while the M-step can be supplied by the
user to easily define new models. Existing drivers implement
mixtures of standard linear models, generalized linear models and
model-based clustering.
Author: Bettina Gruen [aut, cre] (<https://orcid.org/0000-0001-7265-4773>),
Friedrich Leisch [aut] (<https://orcid.org/0000-0001-7278-1983>),
Deepayan Sarkar [ctb] (<https://orcid.org/0000-0003-4107-1553>),
Frederic Mortier [ctb],
Nicolas Picard [ctb] (<https://orcid.org/0000-0001-5548-9171>)
Maintainer: Bettina Gruen <Bettina.Gruen@jku.at>
Diff between flexmix versions 2.3-14 dated 2017-04-28 and 2.3-15 dated 2019-02-18
DESCRIPTION | 43 +++++++++++++++++++++----------------- MD5 | 44 +++++++++++++++++++-------------------- NAMESPACE | 3 +- R/flexmix.R | 14 +++++------- R/glmFix.R | 24 ++++++++++++++------- R/lmer.R | 27 +++++++++++++++++++---- R/lmm.R | 5 ++-- R/lmmc.R | 4 +++ R/mgcv.R | 5 +++- build/vignette.rds |binary data/Mehta.RData |binary inst/NEWS.Rd | 13 +++++++++++ inst/doc/bootstrapping.pdf |binary inst/doc/flexmix-intro.R | 4 +-- inst/doc/flexmix-intro.Rnw | 6 ++--- inst/doc/flexmix-intro.pdf |binary inst/doc/mixture-regressions.pdf |binary inst/doc/regression-examples.pdf |binary man/FLXMCdist1.Rd | 2 - man/FLXMRcondlogit.Rd | 4 +-- man/FLXMRglmnet.Rd | 2 - man/FLXMRlmer.Rd | 14 ++++++++++++ vignettes/flexmix-intro.Rnw | 6 ++--- 23 files changed, 142 insertions(+), 78 deletions(-)
Title: Non-Negative Conjugate-Gradient Minimizer
Description: Minimize a differentiable function subject to all the variables being non-negative (i.e. >= 0),
using a Conjugate-Gradient algorithm based on a modified Polak-Ribiere-Polyak formula as described in
(Li, Can, 2013, <https://www.hindawi.com/journals/jam/2013/986317/abs/>).
Author: David Cortes
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between nonneg.cg versions 0.1 dated 2019-01-27 and 0.1.1 dated 2019-02-18
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/minimize.R | 2 +- man/minimize.nonneg.cg.Rd | 4 ++-- src/nonnegcg.c | 45 +++++++++++++++++++++++---------------------- 5 files changed, 35 insertions(+), 34 deletions(-)
Title: Linear Test Statistics for Permutation Inference
Description: Basic infrastructure for linear test statistics and permutation
inference in the framework of Strasser and Weber (1999) <http://epub.wu.ac.at/102/>.
This package must not be used by end-users. CRAN package 'coin' implements all
user interfaces and is ready to be used by anyone.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between libcoin versions 1.0-2 dated 2018-12-13 and 1.0-3 dated 2019-02-18
DESCRIPTION | 8 MD5 | 14 build/vignette.rds |binary inst/NEWS.Rd | 6 inst/doc/libcoin.Rnw | 2400 +++++++++++++++++++++++++------------------------- inst/doc/libcoin.pdf |binary src/libcoin.c | 16 vignettes/libcoin.Rnw | 2400 +++++++++++++++++++++++++------------------------- 8 files changed, 2425 insertions(+), 2419 deletions(-)
Title: Tools for Simplifying the Population and Querying of SQLite
Databases
Description: Provides objects and accompanying methods which facilitates populating and querying SQLite databases.
Author: Daniel Bottomly [cre, aut],
Shannon McWeeney [aut],
Beth Wilmot [aut]
Maintainer: Daniel Bottomly <bottomly@ohsu.edu>
Diff between poplite versions 0.99.19 dated 2017-10-12 and 0.99.21 dated 2019-02-18
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- R/external_funcs.R | 4 ++-- R/tableSchemaList.R | 8 ++++---- build/vignette.rds |binary data/clinical.rda |binary inst/doc/poplite.R | 2 +- inst/doc/poplite.pdf |binary man/external_funcs.Rd | 7 +++++-- tests/testthat.R | 3 ++- tests/testthat/test-poplite.R | 21 +++++++++++++++------ 11 files changed, 44 insertions(+), 31 deletions(-)
Title: Create and Visualize Hillshaded Maps from Elevation Matrices
Description: Uses a combination of raytracing, spherical texture mapping, lambertian reflectance, and ambient occlusion to produce hillshades of elevation matrices. Includes water detection and layering functions, programmable color palette generation, several built-in textures, 2D and 3D plotting options, and the ability to export 3D maps to a 3D printable format.
Author: Tyler Morgan-Wall
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between rayshader versions 0.5.1 dated 2018-09-11 and 0.10.0 dated 2019-02-18
rayshader-0.10.0/rayshader/DESCRIPTION | 14 - rayshader-0.10.0/rayshader/MD5 | 117 +++++------ rayshader-0.10.0/rayshader/NAMESPACE | 7 rayshader-0.10.0/rayshader/NEWS | 29 ++ rayshader-0.10.0/rayshader/NEWS.md |only rayshader-0.10.0/rayshader/R/RcppExports.R | 44 ++++ rayshader-0.10.0/rayshader/R/add_overlay.R |only rayshader-0.10.0/rayshader/R/add_shadow.R | 7 rayshader-0.10.0/rayshader/R/add_water.R | 6 rayshader-0.10.0/rayshader/R/ambient_shade.R | 30 +- rayshader-0.10.0/rayshader/R/create_texture.R | 2 rayshader-0.10.0/rayshader/R/detect_water.R | 2 rayshader-0.10.0/rayshader/R/flipfunctions.R |only rayshader-0.10.0/rayshader/R/get_ids_with_labels.R |only rayshader-0.10.0/rayshader/R/lamb_shade.R | 2 rayshader-0.10.0/rayshader/R/make_base.R | 46 +--- rayshader-0.10.0/rayshader/R/make_lines.R | 69 +++--- rayshader-0.10.0/rayshader/R/make_shadow.R | 27 +- rayshader-0.10.0/rayshader/R/make_water.R | 56 +---- rayshader-0.10.0/rayshader/R/make_waterlines.R | 70 ------ rayshader-0.10.0/rayshader/R/plot_3d.R | 146 +++++++++++--- rayshader-0.10.0/rayshader/R/plot_map.R | 9 rayshader-0.10.0/rayshader/R/ray_shade.R | 42 ++-- rayshader-0.10.0/rayshader/R/render_camera.R |only rayshader-0.10.0/rayshader/R/render_depth.R |only rayshader-0.10.0/rayshader/R/render_label.R |only rayshader-0.10.0/rayshader/R/render_snapshot.R |only rayshader-0.10.0/rayshader/R/render_water.R |only rayshader-0.10.0/rayshader/R/save_3dprint.R | 46 +++- rayshader-0.10.0/rayshader/R/save_png.R | 2 rayshader-0.10.0/rayshader/R/sphere_shade.R | 32 ++- rayshader-0.10.0/rayshader/data/montereybay.rda |binary rayshader-0.10.0/rayshader/man/add_overlay.Rd |only rayshader-0.10.0/rayshader/man/add_water.Rd | 2 rayshader-0.10.0/rayshader/man/ambient_shade.Rd | 24 +- rayshader-0.10.0/rayshader/man/create_texture.Rd | 2 rayshader-0.10.0/rayshader/man/detect_water.Rd | 2 rayshader-0.10.0/rayshader/man/fliplr.Rd |only rayshader-0.10.0/rayshader/man/flipud.Rd |only rayshader-0.10.0/rayshader/man/get_ids_with_labels.Rd |only rayshader-0.10.0/rayshader/man/lamb_shade.Rd | 2 rayshader-0.10.0/rayshader/man/make_lines.Rd | 2 rayshader-0.10.0/rayshader/man/make_shadow.Rd | 6 rayshader-0.10.0/rayshader/man/make_water.Rd | 3 rayshader-0.10.0/rayshader/man/make_waterlines.Rd | 6 rayshader-0.10.0/rayshader/man/plot_3d.Rd | 66 +++++- rayshader-0.10.0/rayshader/man/plot_map.Rd | 5 rayshader-0.10.0/rayshader/man/ray_shade.Rd | 9 rayshader-0.10.0/rayshader/man/render_camera.Rd |only rayshader-0.10.0/rayshader/man/render_depth.Rd |only rayshader-0.10.0/rayshader/man/render_label.Rd |only rayshader-0.10.0/rayshader/man/render_snapshot.Rd |only rayshader-0.10.0/rayshader/man/render_water.Rd |only rayshader-0.10.0/rayshader/man/save_3dprint.Rd | 11 - rayshader-0.10.0/rayshader/man/save_png.Rd | 2 rayshader-0.10.0/rayshader/man/sphere_shade.Rd | 32 ++- rayshader-0.10.0/rayshader/src/RcppExports.cpp | 171 +++++++++++++++- rayshader-0.10.0/rayshader/src/make_base_cpp.cpp |only rayshader-0.10.0/rayshader/src/pointspread.cpp |only rayshader-0.10.0/rayshader/src/rayshade.cpp | 168 ++++++++++------ rayshader-0.10.0/rayshader/src/rayshade_multicore.cpp | 182 +++++++++++------- rayshader-0.5.1/rayshader/README.md |only rayshader-0.5.1/rayshader/man/figures |only rayshader-0.5.1/rayshader/tools |only 64 files changed, 997 insertions(+), 503 deletions(-)
Title: Bindings to Selected 'liblwgeom' Functions for Simple Features
Description: Access to selected functions found in 'liblwgeom' <https://github.com/postgis/postgis/tree/svn-trunk/liblwgeom>, the light-weight geometry library used by 'PostGIS' <http://postgis.net/>.
Author: Edzer Pebesma [aut, cre] (<https://orcid.org/0000-0001-8049-7069>),
Colin Rundel [ctb],
Andy Teucher [ctb],
liblwgeom developers [cph]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between lwgeom versions 0.1-5 dated 2018-12-07 and 0.1-6 dated 2019-02-18
DESCRIPTION | 8 +- MD5 | 20 ++--- NAMESPACE | 1 R/RcppExports.R | 4 + R/startpoint.R | 8 ++ configure | 182 +-------------------------------------------------- configure.ac | 37 +--------- man/st_startpoint.Rd | 5 + src/README | 2 src/RcppExports.cpp | 12 +++ src/lwgeom.cpp | 19 +++++ 11 files changed, 78 insertions(+), 220 deletions(-)
Title: Sparse Additive Modelling
Description: Computationally efficient tools for high dimensional predictive
modeling (regression and classification). SAM is short for sparse
additive modeling, and adopts the computationally efficient basis
spline technique. We solve the optimization problems by various
computational algorithms including the block coordinate descent
algorithm, fast iterative soft-thresholding algorithm, and newton method.
The computation is further accelerated by warm-start and active-set tricks.
Author: Haoming Jiang, Yukun Ma, Xinyu Fei, Tuo Zhao, Xingguo Li, Han Liu, and Kathryn Roeder
Maintainer: Haoming Jiang <jianghm.ustc@gmail.com>
Diff between SAM versions 1.0.5 dated 2014-02-12 and 1.1.0 dated 2019-02-18
SAM-1.0.5/SAM/src/Makevars |only SAM-1.0.5/SAM/src/grpLR.c |only SAM-1.0.5/SAM/src/grpPR.c |only SAM-1.0.5/SAM/src/grpSVM.c |only SAM-1.0.5/SAM/src/grplasso.c |only SAM-1.1.0/SAM/DESCRIPTION | 31 +-- SAM-1.1.0/SAM/MD5 | 75 ++++--- SAM-1.1.0/SAM/NAMESPACE | 40 ++-- SAM-1.1.0/SAM/R/SAM-package.R |only SAM-1.1.0/SAM/R/samEL.R | 353 +++++++++++++++++++++++------------ SAM-1.1.0/SAM/R/samHL.R | 359 +++++++++++++++++++++++------------- SAM-1.1.0/SAM/R/samLL.R | 367 ++++++++++++++++++++++++------------- SAM-1.1.0/SAM/R/samQL.R | 334 ++++++++++++++++++++++----------- SAM-1.1.0/SAM/configure |only SAM-1.1.0/SAM/man/SAM-package.Rd | 60 +++--- SAM-1.1.0/SAM/man/plot.samEL.Rd | 56 ++--- SAM-1.1.0/SAM/man/plot.samHL.Rd | 56 ++--- SAM-1.1.0/SAM/man/plot.samLL.Rd | 56 ++--- SAM-1.1.0/SAM/man/plot.samQL.Rd | 56 ++--- SAM-1.1.0/SAM/man/predict.samEL.Rd | 70 ++----- SAM-1.1.0/SAM/man/predict.samHL.Rd | 80 +++----- SAM-1.1.0/SAM/man/predict.samLL.Rd | 80 +++----- SAM-1.1.0/SAM/man/predict.samQL.Rd | 70 ++----- SAM-1.1.0/SAM/man/print.samEL.Rd | 55 ++--- SAM-1.1.0/SAM/man/print.samHL.Rd | 55 ++--- SAM-1.1.0/SAM/man/print.samLL.Rd | 55 ++--- SAM-1.1.0/SAM/man/print.samQL.Rd | 55 ++--- SAM-1.1.0/SAM/man/samEL.Rd | 202 +++++++++----------- SAM-1.1.0/SAM/man/samHL.Rd | 210 +++++++++------------ SAM-1.1.0/SAM/man/samLL.Rd | 212 +++++++++------------ SAM-1.1.0/SAM/man/samQL.Rd | 212 +++++++++------------ SAM-1.1.0/SAM/src/Makevars.in |only SAM-1.1.0/SAM/src/Makevars.win |only SAM-1.1.0/SAM/src/amalgamation.cpp |only SAM-1.1.0/SAM/src/c_api |only SAM-1.1.0/SAM/src/c_api.cpp |only SAM-1.1.0/SAM/src/objective |only SAM-1.1.0/SAM/src/solver |only SAM-1.1.0/SAM/src/utils.cpp |only SAM-1.1.0/SAM/src/utils.h |only SAM-1.1.0/SAM/tests |only 41 files changed, 1734 insertions(+), 1465 deletions(-)
Title: Client for the 'DKAN' API
Description: Provides functions to facilitate access to the 'DKAN' API (<https://dkan.readthedocs.io/en/latest/apis/index.html>), including the 'DKAN' REST API (metadata), and the 'DKAN' datastore API (data). Includes functions to list, create, retrieve, update, and delete datasets and resources nodes. It also includes functions to search and retrieve data from the 'DKAN' datastore.
Author: Tony Fujs [aut, cre],
Meera Desai [aut],
Karthik Ramanathan [aut]
Maintainer: Tony Fujs <tonyfujs@gmail.com>
Diff between dkanr versions 0.1.2 dated 2018-07-12 and 0.1.3 dated 2019-02-18
DESCRIPTION | 8 - LICENSE | 2 MD5 | 20 ++-- NEWS.md | 4 README.md | 8 - build/vignette.rds |binary inst/doc/getting_started_with_dkanr.html | 134 +++++++++++++++++-------------- man/attach_file_to_node.Rd | 3 man/dkanr_settings.Rd | 1 man/ds_search_all.Rd | 4 man/list_nodes.Rd | 6 - 11 files changed, 108 insertions(+), 82 deletions(-)
Title: Simulation and Analysis of Random Fields
Description: Methods for the inference on and the simulation of Gaussian fields are provided, as well as methods for the simulation of extreme value random fields.
Author: Martin Schlather [aut, cre], Alexander Malinowski [aut], Marco Oesting [aut], Daphne Boecker [aut], Kirstin Strokorb [aut], Sebastian Engelke [aut], Johannes Martini [aut], Felix Ballani [aut], Olga Moreva [aut], Jonas Auel[ctr], Peter Menck [ctr], Sebastian Gross [ctr], Ulrike Ober [ctb], Paulo Ribeiro [ctb], Richard Singleton [ctb], Ben Pfaff [ctb], R Core Team [ctb]
Maintainer: Martin Schlather <schlather@math.uni-mannheim.de>
Diff between RandomFields versions 3.3 dated 2019-02-14 and 3.3.1 dated 2019-02-18
DESCRIPTION | 8 +++++--- MD5 | 4 ++-- src/fft.cc | 4 ++-- 3 files changed, 9 insertions(+), 7 deletions(-)
Title: Mesh Generation and Surface Tessellation
Description: Makes the 'Qhull' library <http://www.qhull.org>
available in R, in a similar manner as in Octave and MATLAB. Qhull
computes convex hulls, Delaunay triangulations, halfspace
intersections about a point, Voronoi diagrams, furthest-site
Delaunay triangulations, and furthest-site Voronoi diagrams. It
runs in 2D, 3D, 4D, and higher dimensions. It implements the
Quickhull algorithm for computing the convex hull. Qhull does not
support constrained Delaunay triangulations, or mesh generation of
non-convex objects, but the package does include some R functions
that allow for this.
Author: Jean-Romain Roussel [cph, ctb] (wrote tsearch function with QuadTrees),
C. B. Barber [cph],
Kai Habel [cph, aut],
Raoul Grasman [cph, aut],
Robert B. Gramacy [cph, aut],
Pavlo Mozharovskyi [cph, aut],
David C. Sterratt [cph, aut, cre]
Maintainer: David C. Sterratt <david.c.sterratt@ed.ac.uk>
Diff between geometry versions 0.3-6 dated 2015-09-09 and 0.4.0 dated 2019-02-18
geometry-0.3-6/geometry/LICENSE |only geometry-0.3-6/geometry/TODO |only geometry-0.3-6/geometry/inst/doc/Announce.txt |only geometry-0.3-6/geometry/inst/doc/COPYING.txt |only geometry-0.3-6/geometry/inst/doc/File_id.diz |only geometry-0.3-6/geometry/inst/doc/README.txt |only geometry-0.3-6/geometry/inst/doc/REGISTER.txt |only geometry-0.3-6/geometry/inst/doc/html |only geometry-0.3-6/geometry/inst/doc/index.html |only geometry-0.3-6/geometry/src/Rtsearch.c |only geometry-0.3-6/geometry/src/geom.c |only geometry-0.3-6/geometry/src/geom.h |only geometry-0.3-6/geometry/src/geom2.c |only geometry-0.3-6/geometry/src/global.c |only geometry-0.3-6/geometry/src/io.c |only geometry-0.3-6/geometry/src/io.h |only geometry-0.3-6/geometry/src/libqhull.c |only geometry-0.3-6/geometry/src/libqhull.h |only geometry-0.3-6/geometry/src/mem.c |only geometry-0.3-6/geometry/src/mem.h |only geometry-0.3-6/geometry/src/merge.c |only geometry-0.3-6/geometry/src/merge.h |only geometry-0.3-6/geometry/src/poly.c |only geometry-0.3-6/geometry/src/poly.h |only geometry-0.3-6/geometry/src/poly2.c |only geometry-0.3-6/geometry/src/qhull_a.h |only geometry-0.3-6/geometry/src/qset.c |only geometry-0.3-6/geometry/src/qset.h |only geometry-0.3-6/geometry/src/random.c |only geometry-0.3-6/geometry/src/random.h |only geometry-0.3-6/geometry/src/rboxlib.c |only geometry-0.3-6/geometry/src/stat.c |only geometry-0.3-6/geometry/src/stat.h |only geometry-0.3-6/geometry/src/user.c |only geometry-0.3-6/geometry/src/user.h |only geometry-0.3-6/geometry/src/usermem.c |only geometry-0.3-6/geometry/src/userprintf.c |only geometry-0.3-6/geometry/src/userprintf_rbox.c |only geometry-0.4.0/geometry/DESCRIPTION | 50 +- geometry-0.4.0/geometry/MD5 | 325 +++++++++------ geometry-0.4.0/geometry/NAMESPACE | 17 geometry-0.4.0/geometry/NEWS | 117 +++++ geometry-0.4.0/geometry/R/RcppExports.R |only geometry-0.4.0/geometry/R/cart2pol.R |only geometry-0.4.0/geometry/R/cart2sph.R |only geometry-0.4.0/geometry/R/convhulln.R | 182 ++++++-- geometry-0.4.0/geometry/R/delaunayn.R | 176 ++++---- geometry-0.4.0/geometry/R/distmesh2d.R | 172 ++++--- geometry-0.4.0/geometry/R/distmeshnd.R | 12 geometry-0.4.0/geometry/R/extprod3d.R | 18 geometry-0.4.0/geometry/R/halfspacen.R |only geometry-0.4.0/geometry/R/inhulln.R |only geometry-0.4.0/geometry/R/intersectn.R |only geometry-0.4.0/geometry/R/matmax.R | 2 geometry-0.4.0/geometry/R/mesh.diff.R | 2 geometry-0.4.0/geometry/R/pol2cart.R |only geometry-0.4.0/geometry/R/polyarea.R | 16 geometry-0.4.0/geometry/R/qhull-options.R |only geometry-0.4.0/geometry/R/rbox.R |only geometry-0.4.0/geometry/R/sph2cart.R |only geometry-0.4.0/geometry/R/surf.tri.R | 8 geometry-0.4.0/geometry/R/tetramesh.R | 4 geometry-0.4.0/geometry/R/tsearch.R | 212 ++++++--- geometry-0.4.0/geometry/build |only geometry-0.4.0/geometry/demo |only geometry-0.4.0/geometry/inst/WORDLIST |only geometry-0.4.0/geometry/inst/doc/LICENSE-NOTES |only geometry-0.4.0/geometry/inst/doc/MODIFIED.txt | 12 geometry-0.4.0/geometry/inst/doc/qhull |only geometry-0.4.0/geometry/inst/doc/qhull-eg.R |only geometry-0.4.0/geometry/inst/doc/qhull-eg.Rnw |only geometry-0.4.0/geometry/inst/doc/qhull-eg.pdf |only geometry-0.4.0/geometry/inst/extdata/halfspacen.RData |only geometry-0.4.0/geometry/man/Unique.Rd | 5 geometry-0.4.0/geometry/man/bary2cart.Rd | 13 geometry-0.4.0/geometry/man/cart2bary.Rd | 44 +- geometry-0.4.0/geometry/man/cart2pol.Rd |only geometry-0.4.0/geometry/man/cart2sph.Rd |only geometry-0.4.0/geometry/man/convhulln.Rd | 77 ++- geometry-0.4.0/geometry/man/delaunayn.Rd | 124 +++-- geometry-0.4.0/geometry/man/distmesh2d.Rd | 71 +-- geometry-0.4.0/geometry/man/distmeshnd.Rd | 26 - geometry-0.4.0/geometry/man/dot.Rd | 3 geometry-0.4.0/geometry/man/entry.value.Rd | 5 geometry-0.4.0/geometry/man/extprod3d.Rd | 16 geometry-0.4.0/geometry/man/feasible.point.Rd |only geometry-0.4.0/geometry/man/halfspacen.Rd |only geometry-0.4.0/geometry/man/inhulln.Rd |only geometry-0.4.0/geometry/man/intersectn.Rd |only geometry-0.4.0/geometry/man/matmax.Rd | 9 geometry-0.4.0/geometry/man/mesh.dcircle.Rd | 12 geometry-0.4.0/geometry/man/mesh.diff.Rd | 15 geometry-0.4.0/geometry/man/mesh.drectangle.Rd | 11 geometry-0.4.0/geometry/man/mesh.dsphere.Rd | 12 geometry-0.4.0/geometry/man/mesh.hunif.Rd | 9 geometry-0.4.0/geometry/man/pol2cart.Rd |only geometry-0.4.0/geometry/man/polyarea.Rd | 11 geometry-0.4.0/geometry/man/rbox.Rd |only geometry-0.4.0/geometry/man/sph2cart.Rd |only geometry-0.4.0/geometry/man/surf.tri.Rd | 19 geometry-0.4.0/geometry/man/tetramesh.Rd | 16 geometry-0.4.0/geometry/man/to.mesh3d.Rd |only geometry-0.4.0/geometry/man/trimesh.Rd | 9 geometry-0.4.0/geometry/man/tsearch.Rd | 48 +- geometry-0.4.0/geometry/man/tsearchn.Rd | 57 +- geometry-0.4.0/geometry/src/Makevars | 2 geometry-0.4.0/geometry/src/QuadTree.cpp |only geometry-0.4.0/geometry/src/QuadTree.h |only geometry-0.4.0/geometry/src/Rconvhulln.c | 259 +++++------ geometry-0.4.0/geometry/src/RcppExports.cpp |only geometry-0.4.0/geometry/src/Rdelaunayn.c | 296 ++++++------- geometry-0.4.0/geometry/src/Rgeometry.c |only geometry-0.4.0/geometry/src/Rgeometry.h | 13 geometry-0.4.0/geometry/src/Rhalfspacen.c |only geometry-0.4.0/geometry/src/Rinhulln.c |only geometry-0.4.0/geometry/src/Rtsearch.cpp |only geometry-0.4.0/geometry/src/Rtsearch_orig.c |only geometry-0.4.0/geometry/src/Rtsearchn.c |only geometry-0.4.0/geometry/src/geom2_r.c |only geometry-0.4.0/geometry/src/geom_r.c |only geometry-0.4.0/geometry/src/geom_r.h |only geometry-0.4.0/geometry/src/geometry_init.c |only geometry-0.4.0/geometry/src/global_r.c |only geometry-0.4.0/geometry/src/io_r.c |only geometry-0.4.0/geometry/src/io_r.h |only geometry-0.4.0/geometry/src/libqhull_r.c |only geometry-0.4.0/geometry/src/libqhull_r.h |only geometry-0.4.0/geometry/src/mem_r.c |only geometry-0.4.0/geometry/src/mem_r.h |only geometry-0.4.0/geometry/src/merge_r.c |only geometry-0.4.0/geometry/src/merge_r.h |only geometry-0.4.0/geometry/src/poly2_r.c |only geometry-0.4.0/geometry/src/poly_r.c |only geometry-0.4.0/geometry/src/poly_r.h |only geometry-0.4.0/geometry/src/qhull_ra.h |only geometry-0.4.0/geometry/src/qset_r.c |only geometry-0.4.0/geometry/src/qset_r.h |only geometry-0.4.0/geometry/src/random_r.c |only geometry-0.4.0/geometry/src/random_r.h |only geometry-0.4.0/geometry/src/rboxlib_r.c |only geometry-0.4.0/geometry/src/stat_r.c |only geometry-0.4.0/geometry/src/stat_r.h |only geometry-0.4.0/geometry/src/user_r.c |only geometry-0.4.0/geometry/src/user_r.h |only geometry-0.4.0/geometry/src/usermem_r.c |only geometry-0.4.0/geometry/src/userprintf_r.c |only geometry-0.4.0/geometry/src/userprintf_rbox_r.c |only geometry-0.4.0/geometry/tests/spelling.R |only geometry-0.4.0/geometry/tests/testthat/test-cart2pol.R |only geometry-0.4.0/geometry/tests/testthat/test-cart2sph.R |only geometry-0.4.0/geometry/tests/testthat/test-convhulln.R | 96 ++++ geometry-0.4.0/geometry/tests/testthat/test-delaunayn.R | 67 ++- geometry-0.4.0/geometry/tests/testthat/test-distmesh2d.R |only geometry-0.4.0/geometry/tests/testthat/test-extprod3d.R |only geometry-0.4.0/geometry/tests/testthat/test-halfspacen.R |only geometry-0.4.0/geometry/tests/testthat/test-inhulln.R |only geometry-0.4.0/geometry/tests/testthat/test-intersectn.R |only geometry-0.4.0/geometry/tests/testthat/test-pol2cart.R |only geometry-0.4.0/geometry/tests/testthat/test-polyarea.R |only geometry-0.4.0/geometry/tests/testthat/test-sph2cart.R |only geometry-0.4.0/geometry/tests/testthat/test-tsearch.R | 121 +++++ geometry-0.4.0/geometry/tests/testthat/test-tsearchn.R | 103 ++++ geometry-0.4.0/geometry/vignettes |only 163 files changed, 1902 insertions(+), 992 deletions(-)
Title: Treatment of Zeros, Left-Censored and Missing Values in
Compositional Data Sets
Description: Principled methods for the imputation of zeros, left-censored and missing data in
compositional data sets.
Author: Javier Palarea-Albaladejo and Josep Antoni Martin-Fernandez
Maintainer: Javier Palarea-Albaladejo <javier.palarea@bioss.ac.uk>
Diff between zCompositions versions 1.1.2 dated 2018-11-06 and 1.2.0 dated 2019-02-18
DESCRIPTION | 8 ++++---- MD5 | 34 +++++++++++++++++++--------------- NEWS | 12 ++++++++++++ R/cmultRepl.R | 6 +++--- R/lrEM.R | 3 +-- R/lrEMplus.R |only R/zPatterns.R | 34 +++++++++++++++++++++++----------- data/LPdataZM.rda |only man/LPdata.Rd | 4 +++- man/LPdataZM.Rd |only man/cmultRepl.Rd | 12 ++++++------ man/lrDA.Rd | 6 +++--- man/lrEM.Rd | 10 +++++----- man/lrEMplus.Rd |only man/multKM.Rd | 6 +++--- man/multLN.Rd | 6 +++--- man/multRepl.Rd | 6 +++--- man/splineKM.Rd | 4 ++-- man/zCompositions-package.Rd | 11 +++++++++-- man/zPatterns.Rd | 31 ++++++++++++++++++++++++------- 20 files changed, 123 insertions(+), 70 deletions(-)
Title: Formal Psychological Models of Categorization and Learning
Description: Formal psychological models of categorization and learning, independently-replicated data sets against which to test them, and simulation archives.
Author: Andy Wills, Lenard Dome, Charlotte Edmunds, Garrett Honke, Angus Inkster, René Schlegelmilch, Stuart Spicer
Maintainer: Andy Wills <andy@willslab.co.uk>
Diff between catlearn versions 0.6 dated 2018-07-17 and 0.6.1 dated 2019-02-18
DESCRIPTION | 8 ++++---- MD5 | 11 ++++++----- R/slpEXIT.R | 24 ++++++++++++++++-------- R/slpSUSTAIN.R | 54 ++++++++++++++++++++++++++++-------------------------- README.md |only man/slpEXIT.Rd | 2 +- man/slpSUSTAIN.Rd | 36 ++++++++++++++++++++---------------- 7 files changed, 75 insertions(+), 60 deletions(-)
Title: Vector Generalized Linear and Additive Models
Description: An implementation of about 6 major classes of
statistical regression models. The central algorithm is
Fisher scoring and iterative reweighted least squares.
At the heart of this package are the vector generalized linear
and additive model (VGLM/VGAM) classes. VGLMs can be loosely
thought of as multivariate GLMs. VGAMs are data-driven
VGLMs that use smoothing. The book "Vector Generalized
Linear and Additive Models: With an Implementation in R"
(Yee, 2015) <DOI:10.1007/978-1-4939-2818-7> gives details of
the statistical framework and the package. Currently only
fixed-effects models are implemented. Many (150+) models and
distributions are estimated by maximum likelihood estimation
(MLE) or penalized MLE. The other classes are RR-VGLMs
(reduced-rank VGLMs), quadratic RR-VGLMs, reduced-rank VGAMs,
RCIMs (row-column interaction models)---these classes perform
constrained and unconstrained quadratic ordination (CQO/UQO)
models in ecology, as well as constrained additive ordination
(CAO). Note that these functions are subject to change;
see the NEWS and ChangeLog files for latest changes.
Author: Thomas W. Yee <t.yee@auckland.ac.nz>
Maintainer: Thomas Yee <t.yee@auckland.ac.nz>
Diff between VGAM versions 1.0-6 dated 2018-08-18 and 1.1-1 dated 2019-02-18
VGAM-1.0-6/VGAM/R/family.math.R |only VGAM-1.0-6/VGAM/man/cauchit.Rd |only VGAM-1.0-6/VGAM/man/cloglog.Rd |only VGAM-1.0-6/VGAM/man/fisherz.Rd |only VGAM-1.0-6/VGAM/man/foldsqrt.Rd |only VGAM-1.0-6/VGAM/man/golf.Rd |only VGAM-1.0-6/VGAM/man/logc.Rd |only VGAM-1.0-6/VGAM/man/loge.Rd |only VGAM-1.0-6/VGAM/man/logit.Rd |only VGAM-1.0-6/VGAM/man/loglog.Rd |only VGAM-1.0-6/VGAM/man/logoff.Rd |only VGAM-1.0-6/VGAM/man/multilogit.Rd |only VGAM-1.0-6/VGAM/man/nbolf.Rd |only VGAM-1.0-6/VGAM/man/polf.Rd |only VGAM-1.0-6/VGAM/man/probit.Rd |only VGAM-1.0-6/VGAM/man/reciprocal.Rd |only VGAM-1.0-6/VGAM/man/rhobit.Rd |only VGAM-1.1-1/VGAM/DESCRIPTION | 8 VGAM-1.1-1/VGAM/MD5 | 771 +++++++++++++-------------- VGAM-1.1-1/VGAM/NAMESPACE | 28 VGAM-1.1-1/VGAM/NEWS | 84 +- VGAM-1.1-1/VGAM/R/Links.R | 2 VGAM-1.1-1/VGAM/R/aamethods.q | 2 VGAM-1.1-1/VGAM/R/anova.vglm.q | 4 VGAM-1.1-1/VGAM/R/attrassign.R | 2 VGAM-1.1-1/VGAM/R/bAIC.q | 2 VGAM-1.1-1/VGAM/R/build.terms.vlm.q | 2 VGAM-1.1-1/VGAM/R/calibrate.R | 32 - VGAM-1.1-1/VGAM/R/cao.R | 2 VGAM-1.1-1/VGAM/R/cao.fit.q | 3 VGAM-1.1-1/VGAM/R/coef.vlm.q | 13 VGAM-1.1-1/VGAM/R/confint.vlm.R | 2 VGAM-1.1-1/VGAM/R/cqo.R | 2 VGAM-1.1-1/VGAM/R/cqo.fit.q | 6 VGAM-1.1-1/VGAM/R/deviance.vlm.q | 6 VGAM-1.1-1/VGAM/R/effects.vglm.q | 2 VGAM-1.1-1/VGAM/R/family.actuary.R | 137 ++-- VGAM-1.1-1/VGAM/R/family.ait.R |only VGAM-1.1-1/VGAM/R/family.aunivariate.R | 157 +++-- VGAM-1.1-1/VGAM/R/family.basics.R | 43 + VGAM-1.1-1/VGAM/R/family.binomial.R | 54 - VGAM-1.1-1/VGAM/R/family.bivariate.R | 70 +- VGAM-1.1-1/VGAM/R/family.categorical.R | 105 +-- VGAM-1.1-1/VGAM/R/family.censored.R | 16 VGAM-1.1-1/VGAM/R/family.circular.R | 10 VGAM-1.1-1/VGAM/R/family.exp.R | 4 VGAM-1.1-1/VGAM/R/family.extremes.R | 54 - VGAM-1.1-1/VGAM/R/family.functions.R | 2 VGAM-1.1-1/VGAM/R/family.genetic.R | 33 - VGAM-1.1-1/VGAM/R/family.glmgam.R | 48 - VGAM-1.1-1/VGAM/R/family.loglin.R | 2 VGAM-1.1-1/VGAM/R/family.maths.R |only VGAM-1.1-1/VGAM/R/family.mixture.R | 10 VGAM-1.1-1/VGAM/R/family.nbd.R | 84 +- VGAM-1.1-1/VGAM/R/family.nonlinear.R | 2 VGAM-1.1-1/VGAM/R/family.normal.R | 205 ++++--- VGAM-1.1-1/VGAM/R/family.oneinf.R | 36 - VGAM-1.1-1/VGAM/R/family.others.R | 25 VGAM-1.1-1/VGAM/R/family.positive.R | 43 - VGAM-1.1-1/VGAM/R/family.qreg.R | 189 ++++-- VGAM-1.1-1/VGAM/R/family.rcim.R | 18 VGAM-1.1-1/VGAM/R/family.rcqo.R | 2 VGAM-1.1-1/VGAM/R/family.robust.R | 12 VGAM-1.1-1/VGAM/R/family.rrr.R | 40 - VGAM-1.1-1/VGAM/R/family.sur.R | 4 VGAM-1.1-1/VGAM/R/family.survival.R | 6 VGAM-1.1-1/VGAM/R/family.ts.R | 42 - VGAM-1.1-1/VGAM/R/family.univariate.R | 566 +++++++++++++++---- VGAM-1.1-1/VGAM/R/family.vglm.R | 2 VGAM-1.1-1/VGAM/R/family.zeroinf.R | 103 +-- VGAM-1.1-1/VGAM/R/fittedvlm.R | 2 VGAM-1.1-1/VGAM/R/formula.vlm.q | 2 VGAM-1.1-1/VGAM/R/generic.q | 2 VGAM-1.1-1/VGAM/R/getxvlmaug.R | 2 VGAM-1.1-1/VGAM/R/hdeff.R | 166 +++++ VGAM-1.1-1/VGAM/R/links.q | 283 +++++++-- VGAM-1.1-1/VGAM/R/logLik.vlm.q | 2 VGAM-1.1-1/VGAM/R/lrp.R | 2 VGAM-1.1-1/VGAM/R/lrwaldtest.R | 2 VGAM-1.1-1/VGAM/R/model.matrix.vglm.q | 2 VGAM-1.1-1/VGAM/R/mux.q | 2 VGAM-1.1-1/VGAM/R/nobs.R | 2 VGAM-1.1-1/VGAM/R/plot.vgam.R | 2 VGAM-1.1-1/VGAM/R/plot.vglm.R | 2 VGAM-1.1-1/VGAM/R/predict.vgam.q | 2 VGAM-1.1-1/VGAM/R/predict.vglm.q | 2 VGAM-1.1-1/VGAM/R/predict.vlm.q | 2 VGAM-1.1-1/VGAM/R/print.vglm.q | 2 VGAM-1.1-1/VGAM/R/print.vlm.q | 2 VGAM-1.1-1/VGAM/R/psv2magic.R | 2 VGAM-1.1-1/VGAM/R/qrrvglm.control.q | 6 VGAM-1.1-1/VGAM/R/qtplot.q | 2 VGAM-1.1-1/VGAM/R/residuals.vlm.q | 2 VGAM-1.1-1/VGAM/R/rrvglm.R | 2 VGAM-1.1-1/VGAM/R/rrvglm.control.q | 2 VGAM-1.1-1/VGAM/R/rrvglm.fit.q | 12 VGAM-1.1-1/VGAM/R/s.q | 2 VGAM-1.1-1/VGAM/R/s.vam.q | 2 VGAM-1.1-1/VGAM/R/simulate.vglm.R | 2 VGAM-1.1-1/VGAM/R/sm.os.R | 2 VGAM-1.1-1/VGAM/R/sm.ps.R | 2 VGAM-1.1-1/VGAM/R/smart.R | 2 VGAM-1.1-1/VGAM/R/summary.vgam.q | 21 VGAM-1.1-1/VGAM/R/summary.vglm.q | 24 VGAM-1.1-1/VGAM/R/summary.vlm.q | 2 VGAM-1.1-1/VGAM/R/vcov.pvgam.R | 2 VGAM-1.1-1/VGAM/R/vgam.R | 2 VGAM-1.1-1/VGAM/R/vgam.control.q | 3 VGAM-1.1-1/VGAM/R/vgam.fit.q | 2 VGAM-1.1-1/VGAM/R/vgam.match.q | 2 VGAM-1.1-1/VGAM/R/vglm.R | 2 VGAM-1.1-1/VGAM/R/vglm.control.q | 2 VGAM-1.1-1/VGAM/R/vglm.fit.q | 17 VGAM-1.1-1/VGAM/R/vlm.R | 2 VGAM-1.1-1/VGAM/R/vlm.wfit.q | 2 VGAM-1.1-1/VGAM/R/vsmooth.spline.q | 2 VGAM-1.1-1/VGAM/R/wald0.R | 2 VGAM-1.1-1/VGAM/build/vignette.rds |binary VGAM-1.1-1/VGAM/data/Huggins89.t1.rda |binary VGAM-1.1-1/VGAM/data/Huggins89table1.rda |binary VGAM-1.1-1/VGAM/data/alclevels.rda |binary VGAM-1.1-1/VGAM/data/alcoff.rda |binary VGAM-1.1-1/VGAM/data/auuc.rda |binary VGAM-1.1-1/VGAM/data/backPain.rda |binary VGAM-1.1-1/VGAM/data/beggs.rda |binary VGAM-1.1-1/VGAM/data/car.all.rda |binary VGAM-1.1-1/VGAM/data/cfibrosis.rda |binary VGAM-1.1-1/VGAM/data/corbet.rda |binary VGAM-1.1-1/VGAM/data/crashbc.rda |binary VGAM-1.1-1/VGAM/data/crashf.rda |binary VGAM-1.1-1/VGAM/data/crashi.rda |binary VGAM-1.1-1/VGAM/data/crashmc.rda |binary VGAM-1.1-1/VGAM/data/crashp.rda |binary VGAM-1.1-1/VGAM/data/crashtr.rda |binary VGAM-1.1-1/VGAM/data/deermice.rda |binary VGAM-1.1-1/VGAM/data/ducklings.rda |binary VGAM-1.1-1/VGAM/data/finney44.rda |binary VGAM-1.1-1/VGAM/data/flourbeetle.rda |binary VGAM-1.1-1/VGAM/data/hspider.rda |binary VGAM-1.1-1/VGAM/data/lakeO.rda |binary VGAM-1.1-1/VGAM/data/leukemia.rda |binary VGAM-1.1-1/VGAM/data/marital.nz.rda |binary VGAM-1.1-1/VGAM/data/melbmaxtemp.rda |binary VGAM-1.1-1/VGAM/data/pneumo.rda |binary VGAM-1.1-1/VGAM/data/prinia.rda |binary VGAM-1.1-1/VGAM/data/ruge.rda |binary VGAM-1.1-1/VGAM/data/toxop.rda |binary VGAM-1.1-1/VGAM/data/venice.rda |binary VGAM-1.1-1/VGAM/data/venice90.rda |binary VGAM-1.1-1/VGAM/data/wine.rda |binary VGAM-1.1-1/VGAM/inst/doc/categoricalVGAM.pdf |binary VGAM-1.1-1/VGAM/inst/doc/crVGAM.pdf |binary VGAM-1.1-1/VGAM/man/A1A2A3.Rd | 9 VGAM-1.1-1/VGAM/man/AA.Aa.aa.Rd | 2 VGAM-1.1-1/VGAM/man/AB.Ab.aB.ab.Rd | 2 VGAM-1.1-1/VGAM/man/ABO.Rd | 2 VGAM-1.1-1/VGAM/man/AR1.Rd | 8 VGAM-1.1-1/VGAM/man/AR1EIM.Rd | 4 VGAM-1.1-1/VGAM/man/AR1UC.Rd | 2 VGAM-1.1-1/VGAM/man/CommonVGAMffArguments.Rd | 106 ++- VGAM-1.1-1/VGAM/man/Links.Rd | 119 ++-- VGAM-1.1-1/VGAM/man/MNSs.Rd | 6 VGAM-1.1-1/VGAM/man/R2latvar.Rd | 14 VGAM-1.1-1/VGAM/man/VGAM-package.Rd | 14 VGAM-1.1-1/VGAM/man/acat.Rd | 8 VGAM-1.1-1/VGAM/man/alaplace3.Rd | 20 VGAM-1.1-1/VGAM/man/amlbinomial.Rd | 4 VGAM-1.1-1/VGAM/man/amlexponential.Rd | 6 VGAM-1.1-1/VGAM/man/amlpoisson.Rd | 2 VGAM-1.1-1/VGAM/man/anovavglm.Rd | 14 VGAM-1.1-1/VGAM/man/bellff.Rd | 4 VGAM-1.1-1/VGAM/man/benini.Rd | 16 VGAM-1.1-1/VGAM/man/beniniUC.Rd | 2 VGAM-1.1-1/VGAM/man/betaII.Rd | 2 VGAM-1.1-1/VGAM/man/betaR.Rd | 6 VGAM-1.1-1/VGAM/man/betabinomial.Rd | 6 VGAM-1.1-1/VGAM/man/betabinomialff.Rd | 8 VGAM-1.1-1/VGAM/man/betaff.Rd | 14 VGAM-1.1-1/VGAM/man/betageometric.Rd | 2 VGAM-1.1-1/VGAM/man/betaprime.Rd | 2 VGAM-1.1-1/VGAM/man/biamhcop.Rd | 4 VGAM-1.1-1/VGAM/man/biclaytoncop.Rd | 4 VGAM-1.1-1/VGAM/man/bifgmcop.Rd | 4 VGAM-1.1-1/VGAM/man/bifgmexp.Rd | 2 VGAM-1.1-1/VGAM/man/bifrankcop.Rd | 2 VGAM-1.1-1/VGAM/man/bigamma.mckay.Rd | 2 VGAM-1.1-1/VGAM/man/bilogistic.Rd | 2 VGAM-1.1-1/VGAM/man/binom2.or.Rd | 14 VGAM-1.1-1/VGAM/man/binom2.orUC.Rd | 6 VGAM-1.1-1/VGAM/man/binom2.rho.Rd | 12 VGAM-1.1-1/VGAM/man/binom2.rhoUC.Rd | 6 VGAM-1.1-1/VGAM/man/binomialff.Rd | 11 VGAM-1.1-1/VGAM/man/binormal.Rd | 12 VGAM-1.1-1/VGAM/man/binormalcop.Rd | 4 VGAM-1.1-1/VGAM/man/biplackettcop.Rd | 2 VGAM-1.1-1/VGAM/man/bisa.Rd | 2 VGAM-1.1-1/VGAM/man/bistudentt.Rd | 2 VGAM-1.1-1/VGAM/man/borel.tanner.Rd | 2 VGAM-1.1-1/VGAM/man/calibrate.Rd | 16 VGAM-1.1-1/VGAM/man/calibrate.qrrvglm.Rd | 26 VGAM-1.1-1/VGAM/man/cao.Rd | 4 VGAM-1.1-1/VGAM/man/cardioid.Rd | 6 VGAM-1.1-1/VGAM/man/cauchitlink.Rd |only VGAM-1.1-1/VGAM/man/cauchy.Rd | 4 VGAM-1.1-1/VGAM/man/cens.gumbel.Rd | 2 VGAM-1.1-1/VGAM/man/cens.normal.Rd | 2 VGAM-1.1-1/VGAM/man/cens.poisson.Rd | 2 VGAM-1.1-1/VGAM/man/chisq.Rd | 2 VGAM-1.1-1/VGAM/man/clogloglink.Rd |only VGAM-1.1-1/VGAM/man/coefvlm.Rd | 2 VGAM-1.1-1/VGAM/man/constraints.Rd | 6 VGAM-1.1-1/VGAM/man/cqo.Rd | 4 VGAM-1.1-1/VGAM/man/cratio.Rd | 12 VGAM-1.1-1/VGAM/man/cumulative.Rd | 48 + VGAM-1.1-1/VGAM/man/dagum.Rd | 2 VGAM-1.1-1/VGAM/man/diffzeta.Rd | 4 VGAM-1.1-1/VGAM/man/dirichlet.Rd | 2 VGAM-1.1-1/VGAM/man/dirmul.old.Rd | 2 VGAM-1.1-1/VGAM/man/dirmultinomial.Rd | 2 VGAM-1.1-1/VGAM/man/double.cens.normal.Rd | 2 VGAM-1.1-1/VGAM/man/double.expbinomial.Rd | 8 VGAM-1.1-1/VGAM/man/erlang.Rd | 2 VGAM-1.1-1/VGAM/man/expexpff.Rd | 2 VGAM-1.1-1/VGAM/man/expexpff1.Rd | 2 VGAM-1.1-1/VGAM/man/expgeometric.Rd | 4 VGAM-1.1-1/VGAM/man/explink.Rd | 7 VGAM-1.1-1/VGAM/man/explogff.Rd | 4 VGAM-1.1-1/VGAM/man/exponential.Rd | 9 VGAM-1.1-1/VGAM/man/exppoisson.Rd | 2 VGAM-1.1-1/VGAM/man/felix.Rd | 2 VGAM-1.1-1/VGAM/man/fff.Rd | 2 VGAM-1.1-1/VGAM/man/fill.Rd | 4 VGAM-1.1-1/VGAM/man/fisherzlink.Rd |only VGAM-1.1-1/VGAM/man/fisk.Rd | 2 VGAM-1.1-1/VGAM/man/fittedvlm.Rd | 2 VGAM-1.1-1/VGAM/man/flourbeetle.Rd | 6 VGAM-1.1-1/VGAM/man/foldnormal.Rd | 2 VGAM-1.1-1/VGAM/man/foldsqrtlink.Rd |only VGAM-1.1-1/VGAM/man/frechet.Rd | 4 VGAM-1.1-1/VGAM/man/freund61.Rd | 2 VGAM-1.1-1/VGAM/man/gamma1.Rd | 26 VGAM-1.1-1/VGAM/man/gamma2.Rd | 6 VGAM-1.1-1/VGAM/man/gammaR.Rd | 6 VGAM-1.1-1/VGAM/man/gammahyperbola.Rd | 2 VGAM-1.1-1/VGAM/man/garma.Rd | 14 VGAM-1.1-1/VGAM/man/genabinomUC.Rd |only VGAM-1.1-1/VGAM/man/genapoisUC.Rd |only VGAM-1.1-1/VGAM/man/genapoisson.Rd |only VGAM-1.1-1/VGAM/man/genbetaII.Rd | 4 VGAM-1.1-1/VGAM/man/gengamma.Rd | 2 VGAM-1.1-1/VGAM/man/genibinomUC.Rd |only VGAM-1.1-1/VGAM/man/genipoisUC.Rd |only VGAM-1.1-1/VGAM/man/genipoisson.Rd |only VGAM-1.1-1/VGAM/man/genpoisson.Rd | 8 VGAM-1.1-1/VGAM/man/genrayleigh.Rd | 2 VGAM-1.1-1/VGAM/man/gentbinomUC.Rd |only VGAM-1.1-1/VGAM/man/gentbinomial.Rd |only VGAM-1.1-1/VGAM/man/gentpoisUC.Rd |only VGAM-1.1-1/VGAM/man/gentpoisson.Rd |only VGAM-1.1-1/VGAM/man/geometric.Rd | 6 VGAM-1.1-1/VGAM/man/gev.Rd | 20 VGAM-1.1-1/VGAM/man/gompertz.Rd | 2 VGAM-1.1-1/VGAM/man/gordlink.Rd |only VGAM-1.1-1/VGAM/man/gpd.Rd | 10 VGAM-1.1-1/VGAM/man/gumbel.Rd | 4 VGAM-1.1-1/VGAM/man/gumbelII.Rd | 2 VGAM-1.1-1/VGAM/man/hdeff.Rd | 18 VGAM-1.1-1/VGAM/man/hdeffsev.Rd |only VGAM-1.1-1/VGAM/man/hormone.Rd | 12 VGAM-1.1-1/VGAM/man/hspider.Rd | 2 VGAM-1.1-1/VGAM/man/huber.Rd | 2 VGAM-1.1-1/VGAM/man/hyperg.Rd | 2 VGAM-1.1-1/VGAM/man/hypersecant.Rd | 6 VGAM-1.1-1/VGAM/man/hzeta.Rd | 2 VGAM-1.1-1/VGAM/man/identitylink.Rd | 15 VGAM-1.1-1/VGAM/man/inv.binomial.Rd | 4 VGAM-1.1-1/VGAM/man/inv.gaussianff.Rd | 2 VGAM-1.1-1/VGAM/man/inv.lomax.Rd | 2 VGAM-1.1-1/VGAM/man/inv.paralogistic.Rd | 2 VGAM-1.1-1/VGAM/man/kumar.Rd | 2 VGAM-1.1-1/VGAM/man/laplace.Rd | 2 VGAM-1.1-1/VGAM/man/leipnik.Rd | 8 VGAM-1.1-1/VGAM/man/lerch.Rd | 55 + VGAM-1.1-1/VGAM/man/levy.Rd | 2 VGAM-1.1-1/VGAM/man/lgammaff.Rd | 4 VGAM-1.1-1/VGAM/man/lindley.Rd | 2 VGAM-1.1-1/VGAM/man/linkfun.Rd | 2 VGAM-1.1-1/VGAM/man/linkfun.vglm.Rd | 6 VGAM-1.1-1/VGAM/man/lino.Rd | 4 VGAM-1.1-1/VGAM/man/lms.bcg.Rd | 2 VGAM-1.1-1/VGAM/man/lms.bcn.Rd | 22 VGAM-1.1-1/VGAM/man/lms.yjn.Rd | 4 VGAM-1.1-1/VGAM/man/logF.Rd | 2 VGAM-1.1-1/VGAM/man/logLikvlm.Rd | 8 VGAM-1.1-1/VGAM/man/logclink.Rd |only VGAM-1.1-1/VGAM/man/logff.Rd | 10 VGAM-1.1-1/VGAM/man/logistic.Rd | 4 VGAM-1.1-1/VGAM/man/logitlink.Rd |only VGAM-1.1-1/VGAM/man/logitoffsetlink.Rd | 10 VGAM-1.1-1/VGAM/man/loglaplace.Rd | 22 VGAM-1.1-1/VGAM/man/loglink.Rd |only VGAM-1.1-1/VGAM/man/logloglink.Rd |only VGAM-1.1-1/VGAM/man/lognormal.Rd | 4 VGAM-1.1-1/VGAM/man/logofflink.Rd |only VGAM-1.1-1/VGAM/man/lomax.Rd | 2 VGAM-1.1-1/VGAM/man/lrt.stat.Rd | 2 VGAM-1.1-1/VGAM/man/lvplot.qrrvglm.Rd | 8 VGAM-1.1-1/VGAM/man/makeham.Rd | 2 VGAM-1.1-1/VGAM/man/margeff.Rd | 2 VGAM-1.1-1/VGAM/man/maxwell.Rd | 17 VGAM-1.1-1/VGAM/man/mccullagh89.Rd | 6 VGAM-1.1-1/VGAM/man/mix2exp.Rd | 4 VGAM-1.1-1/VGAM/man/mix2normal.Rd | 8 VGAM-1.1-1/VGAM/man/mix2poisson.Rd | 4 VGAM-1.1-1/VGAM/man/multilogitlink.Rd |only VGAM-1.1-1/VGAM/man/multinomial.Rd | 2 VGAM-1.1-1/VGAM/man/nakagami.Rd | 2 VGAM-1.1-1/VGAM/man/nbcanlink.Rd | 2 VGAM-1.1-1/VGAM/man/nbordlink.Rd |only VGAM-1.1-1/VGAM/man/negbinomial.Rd | 72 +- VGAM-1.1-1/VGAM/man/negbinomial.size.Rd | 2 VGAM-1.1-1/VGAM/man/normal.vcm.Rd | 76 +- VGAM-1.1-1/VGAM/man/notdocumentedyet.Rd | 37 + VGAM-1.1-1/VGAM/man/oalog.Rd | 6 VGAM-1.1-1/VGAM/man/oapospoisson.Rd | 6 VGAM-1.1-1/VGAM/man/oazeta.Rd | 6 VGAM-1.1-1/VGAM/man/oilog.Rd | 4 VGAM-1.1-1/VGAM/man/oiposbinomial.Rd | 8 VGAM-1.1-1/VGAM/man/oipospoisson.Rd | 2 VGAM-1.1-1/VGAM/man/oizeta.Rd | 4 VGAM-1.1-1/VGAM/man/oizipf.Rd | 4 VGAM-1.1-1/VGAM/man/ordpoisson.Rd | 2 VGAM-1.1-1/VGAM/man/ordsup.Rd | 5 VGAM-1.1-1/VGAM/man/otlog.Rd | 4 VGAM-1.1-1/VGAM/man/otpospoisson.Rd | 4 VGAM-1.1-1/VGAM/man/otzeta.Rd | 4 VGAM-1.1-1/VGAM/man/paralogistic.Rd | 2 VGAM-1.1-1/VGAM/man/paretoIV.Rd | 11 VGAM-1.1-1/VGAM/man/paretoff.Rd | 4 VGAM-1.1-1/VGAM/man/perks.Rd | 2 VGAM-1.1-1/VGAM/man/poisson.points.Rd | 2 VGAM-1.1-1/VGAM/man/poissonff.Rd | 10 VGAM-1.1-1/VGAM/man/pordlink.Rd |only VGAM-1.1-1/VGAM/man/posbernUC.Rd | 2 VGAM-1.1-1/VGAM/man/posbernoulli.b.Rd | 2 VGAM-1.1-1/VGAM/man/posbernoulli.t.Rd | 2 VGAM-1.1-1/VGAM/man/posbernoulli.tb.Rd | 10 VGAM-1.1-1/VGAM/man/posbinomUC.Rd | 5 VGAM-1.1-1/VGAM/man/posbinomial.Rd | 3 VGAM-1.1-1/VGAM/man/posnegbinomial.Rd | 4 VGAM-1.1-1/VGAM/man/posnormal.Rd | 2 VGAM-1.1-1/VGAM/man/pospoisUC.Rd | 1 VGAM-1.1-1/VGAM/man/pospoisson.Rd | 3 VGAM-1.1-1/VGAM/man/powerlink.Rd | 2 VGAM-1.1-1/VGAM/man/predictqrrvglm.Rd | 2 VGAM-1.1-1/VGAM/man/prentice74.Rd | 2 VGAM-1.1-1/VGAM/man/probitlink.Rd |only VGAM-1.1-1/VGAM/man/qrrvglm.control.Rd | 2 VGAM-1.1-1/VGAM/man/rayleigh.Rd | 41 - VGAM-1.1-1/VGAM/man/rec.exp1.Rd | 2 VGAM-1.1-1/VGAM/man/rec.normal.Rd | 2 VGAM-1.1-1/VGAM/man/reciprocallink.Rd |only VGAM-1.1-1/VGAM/man/rhobitlink.Rd |only VGAM-1.1-1/VGAM/man/riceff.Rd | 2 VGAM-1.1-1/VGAM/man/rigff.Rd | 2 VGAM-1.1-1/VGAM/man/rrvglm.Rd | 11 VGAM-1.1-1/VGAM/man/s.Rd | 4 VGAM-1.1-1/VGAM/man/sc.studentt2.Rd | 2 VGAM-1.1-1/VGAM/man/score.stat.Rd | 1 VGAM-1.1-1/VGAM/man/seglines.Rd |only VGAM-1.1-1/VGAM/man/seq2binomial.Rd | 6 VGAM-1.1-1/VGAM/man/simplex.Rd | 4 VGAM-1.1-1/VGAM/man/simulate.vlm.Rd | 14 VGAM-1.1-1/VGAM/man/sinmad.Rd | 2 VGAM-1.1-1/VGAM/man/skellam.Rd | 2 VGAM-1.1-1/VGAM/man/slash.Rd | 2 VGAM-1.1-1/VGAM/man/sratio.Rd | 12 VGAM-1.1-1/VGAM/man/studentt.Rd | 6 VGAM-1.1-1/VGAM/man/tikuv.Rd | 2 VGAM-1.1-1/VGAM/man/tobit.Rd | 2 VGAM-1.1-1/VGAM/man/topple.Rd | 24 VGAM-1.1-1/VGAM/man/triangle.Rd | 8 VGAM-1.1-1/VGAM/man/trinormal.Rd | 22 VGAM-1.1-1/VGAM/man/truncweibull.Rd | 2 VGAM-1.1-1/VGAM/man/uninormal.Rd | 25 VGAM-1.1-1/VGAM/man/vglm.Rd | 116 ++-- VGAM-1.1-1/VGAM/man/vglmff-class.Rd | 4 VGAM-1.1-1/VGAM/man/vonmises.Rd | 2 VGAM-1.1-1/VGAM/man/wald.stat.Rd | 14 VGAM-1.1-1/VGAM/man/waldff.Rd | 2 VGAM-1.1-1/VGAM/man/weibull.mean.Rd | 8 VGAM-1.1-1/VGAM/man/weibullR.Rd | 4 VGAM-1.1-1/VGAM/man/yip88.Rd | 2 VGAM-1.1-1/VGAM/man/yulesimon.Rd | 2 VGAM-1.1-1/VGAM/man/zabinomial.Rd | 8 VGAM-1.1-1/VGAM/man/zageometric.Rd | 8 VGAM-1.1-1/VGAM/man/zanegbinomial.Rd | 12 VGAM-1.1-1/VGAM/man/zapoisUC.Rd | 1 VGAM-1.1-1/VGAM/man/zapoisson.Rd | 13 VGAM-1.1-1/VGAM/man/zeta.Rd | 11 VGAM-1.1-1/VGAM/man/zetaff.Rd | 2 VGAM-1.1-1/VGAM/man/zibinomUC.Rd | 5 VGAM-1.1-1/VGAM/man/zibinomial.Rd | 9 VGAM-1.1-1/VGAM/man/zigeometric.Rd | 10 VGAM-1.1-1/VGAM/man/zinegbinomial.Rd | 14 VGAM-1.1-1/VGAM/man/zipebcom.Rd | 16 VGAM-1.1-1/VGAM/man/zipf.Rd | 2 VGAM-1.1-1/VGAM/man/zipoisUC.Rd | 1 VGAM-1.1-1/VGAM/man/zipoisson.Rd | 27 VGAM-1.1-1/VGAM/man/zoabetaR.Rd | 8 410 files changed, 3480 insertions(+), 2179 deletions(-)
Title: Tools for Handling Spatial Objects
Description: Set of tools for manipulating geographic data. It includes binary access to 'GSHHG' shoreline files. The package also provides interface wrappers for exchanging spatial objects with packages such as 'PBSmapping', 'spatstat', 'maps', 'RArcInfo', and others.
Author: Roger Bivand [cre, aut] (<https://orcid.org/0000-0003-2392-6140>),
Nicholas Lewin-Koh [aut],
Edzer Pebesma [ctb],
Eric Archer [ctb],
Adrian Baddeley [ctb],
Nick Bearman [ctb],
Hans-Jörg Bibiko [ctb],
Steven Brey [ctb],
Jonathan Callahan [ctb],
German Carrillo [ctb],
Stéphane Dray [ctb],
David Forrest [ctb],
Michael Friendly [ctb],
Patrick Giraudoux [ctb],
Duncan Golicher [ctb],
Virgilio Gómez Rubio [ctb],
Patrick Hausmann [ctb],
Karl Ove Hufthammer [ctb],
Thomas Jagger [ctb],
Kent Johnson [ctb],
Sebastian Luque [ctb],
Don MacQueen [ctb],
Andrew Niccolai [ctb],
Edzer Pebesma [ctb],
Oscar Perpiñán Lamigueiro [ctb],
Ethan Plunkett [ctb],
Tom Short [ctb],
Greg Snow [ctb],
Ben Stabler [ctb],
Murray Stokely [ctb],
Rolf Turner [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between maptools versions 0.9-4 dated 2018-09-19 and 0.9-5 dated 2019-02-18
ChangeLog | 43 +++++++++++ DESCRIPTION | 13 ++- MD5 | 20 ++--- R/as.linnet.SL.R | 151 +++++++++++++++++++++--------------------- R/gc_dist.R | 2 R/point_line_distance.R | 55 +++++++++++---- build/vignette.rds |binary inst/ChangeLog | 59 ++++++++++++++++ inst/doc/combine_maptools.pdf |binary man/as.linnet.SpatialLines.Rd | 14 +++ man/snapPointsToLines.Rd | 8 +- 11 files changed, 252 insertions(+), 113 deletions(-)
Title: Tidy Temporal Data Frames and Tools
Description: Provides a 'tbl_ts' class (the 'tsibble') to store
and manage temporal data in a data-centric format, which is built on
top of the 'tibble'. The 'tsibble' aims at easily manipulating and
analysing temporal data, including counting and filling in time gaps,
aggregate over calendar periods, performing rolling window
calculations, and etc.
Author: Earo Wang [aut, cre] (<https://orcid.org/0000-0001-6448-5260>),
Di Cook [aut, ths] (<https://orcid.org/0000-0002-3813-7155>),
Rob Hyndman [aut, ths] (<https://orcid.org/0000-0002-2140-5352>),
Mitchell O'Hara-Wild [ctb]
Maintainer: Earo Wang <earo.wang@gmail.com>
Diff between tsibble versions 0.6.2 dated 2018-12-12 and 0.7.0 dated 2019-02-18
tsibble-0.6.2/tsibble/man/build_tsibble_meta.Rd |only tsibble-0.6.2/tsibble/man/count-gaps.Rd |only tsibble-0.6.2/tsibble/man/duplicated.Rd |only tsibble-0.6.2/tsibble/man/fill-gaps.Rd |only tsibble-0.6.2/tsibble/man/gaps.Rd |only tsibble-0.6.2/tsibble/man/has-gaps.Rd |only tsibble-0.6.2/tsibble/man/key-size.Rd |only tsibble-0.6.2/tsibble/man/key_by.Rd |only tsibble-0.6.2/tsibble/man/scan-gaps.Rd |only tsibble-0.7.0/tsibble/DESCRIPTION | 18 - tsibble-0.7.0/tsibble/MD5 | 181 +++++----- tsibble-0.7.0/tsibble/NAMESPACE | 51 +- tsibble-0.7.0/tsibble/NEWS.md | 34 + tsibble-0.7.0/tsibble/R/RcppExports.R | 4 tsibble-0.7.0/tsibble/R/as-tsibble.R | 253 ++++++++------ tsibble-0.7.0/tsibble/R/bind.R | 5 tsibble-0.7.0/tsibble/R/deprecated.R | 13 tsibble-0.7.0/tsibble/R/dplyr-groups.R |only tsibble-0.7.0/tsibble/R/dplyr-join.R | 44 +- tsibble-0.7.0/tsibble/R/dplyr-verbs.R | 221 ++++++++---- tsibble-0.7.0/tsibble/R/error.R | 15 tsibble-0.7.0/tsibble/R/filter-index.R | 5 tsibble-0.7.0/tsibble/R/format.R | 12 tsibble-0.7.0/tsibble/R/gaps.R | 155 ++++---- tsibble-0.7.0/tsibble/R/holiday.R | 2 tsibble-0.7.0/tsibble/R/index-by.R | 16 tsibble-0.7.0/tsibble/R/interval.R | 10 tsibble-0.7.0/tsibble/R/key-group.R | 144 +------- tsibble-0.7.0/tsibble/R/new-data.R | 8 tsibble-0.7.0/tsibble/R/period.R | 17 tsibble-0.7.0/tsibble/R/reexports.R | 124 ------ tsibble-0.7.0/tsibble/R/slide.R | 268 +++++++++------ tsibble-0.7.0/tsibble/R/stretch.R | 207 +++++++---- tsibble-0.7.0/tsibble/R/subset.R | 75 ---- tsibble-0.7.0/tsibble/R/tidyr-verbs.R | 87 +++- tsibble-0.7.0/tsibble/R/tile.R | 32 + tsibble-0.7.0/tsibble/R/time-wise.R | 2 tsibble-0.7.0/tsibble/R/ts2tsibble.R | 15 tsibble-0.7.0/tsibble/R/tsibble-pkg.R | 1 tsibble-0.7.0/tsibble/R/tsibble2ts.R | 5 tsibble-0.7.0/tsibble/R/type-sum.R | 13 tsibble-0.7.0/tsibble/R/update.R | 87 ++-- tsibble-0.7.0/tsibble/R/utils-format.R | 6 tsibble-0.7.0/tsibble/R/utils.R | 10 tsibble-0.7.0/tsibble/R/zzz.R | 2 tsibble-0.7.0/tsibble/README.md | 39 +- tsibble-0.7.0/tsibble/build/vignette.rds |binary tsibble-0.7.0/tsibble/data/pedestrian.rda |binary tsibble-0.7.0/tsibble/data/tourism.rda |binary tsibble-0.7.0/tsibble/inst/CITATION |only tsibble-0.7.0/tsibble/inst/WORDLIST | 42 +- tsibble-0.7.0/tsibble/inst/doc/implicit-na.html | 2 tsibble-0.7.0/tsibble/inst/doc/intro-tsibble.html | 2 tsibble-0.7.0/tsibble/man/as-tibble.Rd | 4 tsibble-0.7.0/tsibble/man/as-tsibble.Rd | 3 tsibble-0.7.0/tsibble/man/build_tsibble.Rd | 8 tsibble-0.7.0/tsibble/man/count_gaps.Rd |only tsibble-0.7.0/tsibble/man/duplicates.Rd |only tsibble-0.7.0/tsibble/man/fill_gaps.Rd |only tsibble-0.7.0/tsibble/man/filter_index.Rd | 5 tsibble-0.7.0/tsibble/man/future-slide.Rd | 4 tsibble-0.7.0/tsibble/man/future-stretch.Rd | 4 tsibble-0.7.0/tsibble/man/future-tile.Rd | 4 tsibble-0.7.0/tsibble/man/group_by_key.Rd | 4 tsibble-0.7.0/tsibble/man/has_gaps.Rd |only tsibble-0.7.0/tsibble/man/index-by.Rd | 6 tsibble-0.7.0/tsibble/man/key-data.Rd |only tsibble-0.7.0/tsibble/man/key.Rd | 2 tsibble-0.7.0/tsibble/man/new_tsibble.Rd | 2 tsibble-0.7.0/tsibble/man/partial-slider.Rd | 17 tsibble-0.7.0/tsibble/man/period.Rd | 7 tsibble-0.7.0/tsibble/man/reexports.Rd | 46 +- tsibble-0.7.0/tsibble/man/scan_gaps.Rd |only tsibble-0.7.0/tsibble/man/slide.Rd | 45 +- tsibble-0.7.0/tsibble/man/slide2.Rd | 58 +-- tsibble-0.7.0/tsibble/man/slide_tsibble.Rd |only tsibble-0.7.0/tsibble/man/slider.Rd | 7 tsibble-0.7.0/tsibble/man/stretch.Rd | 48 +- tsibble-0.7.0/tsibble/man/stretch2.Rd | 65 ++- tsibble-0.7.0/tsibble/man/stretch_tsibble.Rd |only tsibble-0.7.0/tsibble/man/stretcher.Rd | 15 tsibble-0.7.0/tsibble/man/tidyverse.Rd | 62 +-- tsibble-0.7.0/tsibble/man/tile.Rd | 23 - tsibble-0.7.0/tsibble/man/tile2.Rd | 27 - tsibble-0.7.0/tsibble/man/tile_tsibble.Rd |only tsibble-0.7.0/tsibble/man/tsibble-package.Rd | 2 tsibble-0.7.0/tsibble/man/update_tsibble.Rd |only tsibble-0.7.0/tsibble/src/RcppExports.cpp | 12 tsibble-0.7.0/tsibble/src/utils.cpp | 42 +- tsibble-0.7.0/tsibble/tests/testthat/test-bind.R | 9 tsibble-0.7.0/tsibble/tests/testthat/test-dplyr.R | 19 + tsibble-0.7.0/tsibble/tests/testthat/test-empty.R | 59 +++ tsibble-0.7.0/tsibble/tests/testthat/test-filter-index.R | 4 tsibble-0.7.0/tsibble/tests/testthat/test-gaps.R | 27 + tsibble-0.7.0/tsibble/tests/testthat/test-groups.R |only tsibble-0.7.0/tsibble/tests/testthat/test-index-fun.R | 6 tsibble-0.7.0/tsibble/tests/testthat/test-key.R | 10 tsibble-0.7.0/tsibble/tests/testthat/test-roll-tsibble.R |only tsibble-0.7.0/tsibble/tests/testthat/test-slide.R | 85 ++++ tsibble-0.7.0/tsibble/tests/testthat/test-stretch.R | 81 ++-- tsibble-0.7.0/tsibble/tests/testthat/test-subset.R | 13 tsibble-0.7.0/tsibble/tests/testthat/test-tidyr.R | 13 tsibble-0.7.0/tsibble/tests/testthat/test-tsibble.R | 24 + 103 files changed, 1799 insertions(+), 1300 deletions(-)
Title: Versatile Ultra-Fast Spectral Clustering for Single and
Multi-View Data
Description: A versatile ultra-fast spectral clustering method for single or multi-view data. 'Spectrum' uses a new type of adaptive density aware kernel that strengthens local connections in dense regions in the graph. For integrating multi-view data and reducing noise we use a recently developed tensor product graph data integration and diffusion system. 'Spectrum' contains two techniques for finding the number of clusters (K); the classical eigengap method and a novel multimodality gap procedure. The multimodality gap analyses the distribution of the eigenvectors of the graph Laplacian to decide K and tune the kernel. 'Spectrum' is suited for clustering a wide range of complex data.
Author: Christopher R John, David Watson
Maintainer: Christopher R John <chris.r.john86@gmail.com>
Diff between Spectrum versions 0.2 dated 2019-02-11 and 0.3 dated 2019-02-18
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/spectrum.R | 17 +++++++++-------- inst/doc/Spectrum_vignette.R | 10 +++++----- inst/doc/Spectrum_vignette.Rmd | 14 +++++++------- inst/doc/Spectrum_vignette.pdf |binary man/Spectrum.Rd | 4 +++- vignettes/Spectrum_vignette.Rmd | 14 +++++++------- 8 files changed, 42 insertions(+), 39 deletions(-)
Title: Filtering Satellite-Derived Locations
Description: Functions to filter GPS and/or Argos locations. The provided
filters remove temporal and spatial duplicates, fixes located at a given
height from estimated high tide line, and locations with high error as
proposed in Shimada et al. (2012) <doi:10.3354/meps09747> and
Shimada et al. (2016) <doi:10.1007/s00227-015-2771-0>.
Author: Takahiro Shimada
Maintainer: Takahiro Shimada <takahiro.shimada@my.jcu.edu.au>
Diff between SDLfilter versions 1.1.1 dated 2018-06-20 and 1.2.0 dated 2019-02-18
DESCRIPTION | 13 +++++++------ MD5 | 44 +++++++++++++++++++++++--------------------- NAMESPACE | 1 + NEWS | 6 ++++++ NEWS.md | 6 ++++++ R/ddfilter.loop.r | 12 ++++++------ R/ddfilter.r | 11 ++++++----- R/ddfilter.speed.r | 4 +++- R/depthfilter.r | 6 +++--- R/distancefilter.r |only R/dupfilter.exact.r | 1 + R/dupfilter.qi.r | 2 ++ R/dupfilter.space.r | 6 ++++-- R/dupfilter.time.r | 1 + R/estMaxVlp.R | 3 +-- R/plotMap.R | 14 +++++++++----- README.md | 4 ++-- man/ddfilter.Rd | 12 +++++++----- man/ddfilter.loop.Rd | 10 +++++----- man/ddfilter.speed.Rd | 2 +- man/depthfilter.Rd | 6 +++--- man/distance_filter.Rd |only man/dupfilter.space.Rd | 6 ++++-- man/plotMap.Rd | 13 ++++++++----- 24 files changed, 109 insertions(+), 74 deletions(-)
Title: 'ggplot2' Based Plots with Statistical Details
Description: Extension of 'ggplot2', 'ggstatsplot' creates
graphics with details from statistical tests included in the plots
themselves. It is targeted primarily at behavioral sciences community
to provide a one-line code to generate information-rich plots for
statistical analysis. of continuous (violin plots, scatterplots,
histograms) or categorical (pie and bar charts) data. Currently, it
supports only the most common types of statistical tests: parametric,
nonparametric, robust, and bayesian versions of t-test/anova,
correlation analyses, contingency table analysis, and regression
analyses.
Author: Indrajeet Patil [cre, aut, ctb]
(<https://orcid.org/0000-0003-1995-6531>),
Chuck Powell [aut, ctb] (<https://orcid.org/0000-0002-3606-2188>)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between ggstatsplot versions 0.0.8 dated 2019-01-07 and 0.0.9 dated 2019-02-18
ggstatsplot-0.0.8/ggstatsplot/man/figures/README-ggcoefstats3-1.png |only ggstatsplot-0.0.8/ggstatsplot/tests/figs |only ggstatsplot-0.0.8/ggstatsplot/tests/testthat/helper-vdiffr.R |only ggstatsplot-0.0.8/ggstatsplot/tests/testthat/test_subtitle_mann_paired.R |only ggstatsplot-0.0.8/ggstatsplot/tests/testthat/test_subtitle_t_bayes_paired.R |only ggstatsplot-0.0.8/ggstatsplot/tests/testthat/test_yuend_ci_paired.R |only ggstatsplot-0.0.9/ggstatsplot/DESCRIPTION | 86 - ggstatsplot-0.0.9/ggstatsplot/MD5 | 335 ++--- ggstatsplot-0.0.9/ggstatsplot/NAMESPACE | 26 ggstatsplot-0.0.9/ggstatsplot/NEWS.md | 62 ggstatsplot-0.0.9/ggstatsplot/R/combine_plots.R | 8 ggstatsplot-0.0.9/ggstatsplot/R/ggbarstats.R |only ggstatsplot-0.0.9/ggstatsplot/R/ggbetweenstats.R | 154 +- ggstatsplot-0.0.9/ggstatsplot/R/ggcoefstats.R | 190 +- ggstatsplot-0.0.9/ggstatsplot/R/ggcorrmat.R | 26 ggstatsplot-0.0.9/ggstatsplot/R/ggdotplotstats.R | 32 ggstatsplot-0.0.9/ggstatsplot/R/gghistostats.R | 119 + ggstatsplot-0.0.9/ggstatsplot/R/ggpiestats.R | 376 ++--- ggstatsplot-0.0.9/ggstatsplot/R/ggscatterstats.R | 151 -- ggstatsplot-0.0.9/ggstatsplot/R/ggstatsplot-package.R | 2 ggstatsplot-0.0.9/ggstatsplot/R/global_vars.R | 8 ggstatsplot-0.0.9/ggstatsplot/R/grouped_ggbarstats.R |only ggstatsplot-0.0.9/ggstatsplot/R/grouped_ggbetweenstats.R | 103 - ggstatsplot-0.0.9/ggstatsplot/R/grouped_ggcorrmat.R | 235 +-- ggstatsplot-0.0.9/ggstatsplot/R/grouped_ggdotplotstats.R | 141 -- ggstatsplot-0.0.9/ggstatsplot/R/grouped_gghistostats.R | 173 +- ggstatsplot-0.0.9/ggstatsplot/R/grouped_ggpiestats.R | 123 - ggstatsplot-0.0.9/ggstatsplot/R/grouped_ggscatterstats.R | 44 ggstatsplot-0.0.9/ggstatsplot/R/helpers_bf_tests.R | 291 +--- ggstatsplot-0.0.9/ggstatsplot/R/helpers_effsize_ci.R | 114 + ggstatsplot-0.0.9/ggstatsplot/R/helpers_ggbetween_anova_subtitles.R | 134 -- ggstatsplot-0.0.9/ggstatsplot/R/helpers_ggbetween_t_subtitles.R | 662 +++++++--- ggstatsplot-0.0.9/ggstatsplot/R/helpers_ggbetweenstats.R | 13 ggstatsplot-0.0.9/ggstatsplot/R/helpers_ggcatstats.R |only ggstatsplot-0.0.9/ggstatsplot/R/helpers_ggcoefstats.R | 362 ++--- ggstatsplot-0.0.9/ggstatsplot/R/helpers_ggcorrmat.R | 2 ggstatsplot-0.0.9/ggstatsplot/R/helpers_gghistostats.R | 156 +- ggstatsplot-0.0.9/ggstatsplot/R/helpers_gghistostats_subtitles.R | 166 -- ggstatsplot-0.0.9/ggstatsplot/R/helpers_ggpiestats_subtitles.R | 179 -- ggstatsplot-0.0.9/ggstatsplot/R/helpers_ggscatterstats_subtitles.R | 22 ggstatsplot-0.0.9/ggstatsplot/R/helpers_grouped_functions.R |only ggstatsplot-0.0.9/ggstatsplot/R/helpers_messages.R | 145 +- ggstatsplot-0.0.9/ggstatsplot/R/helpers_pairwise_comparison.R | 37 ggstatsplot-0.0.9/ggstatsplot/R/subtitle_maker_templates.R | 92 + ggstatsplot-0.0.9/ggstatsplot/R/theme_ggstatsplot.R | 7 ggstatsplot-0.0.9/ggstatsplot/R/utils-tidy.R | 32 ggstatsplot-0.0.9/ggstatsplot/README.md | 403 +++--- ggstatsplot-0.0.9/ggstatsplot/inst/WORDLIST | 26 ggstatsplot-0.0.9/ggstatsplot/inst/doc/additional.Rmd | 8 ggstatsplot-0.0.9/ggstatsplot/inst/doc/additional.html | 9 ggstatsplot-0.0.9/ggstatsplot/man/bartlett_message.Rd | 19 ggstatsplot-0.0.9/ggstatsplot/man/bf_contingency_tab.Rd | 7 ggstatsplot-0.0.9/ggstatsplot/man/bf_corr_test.Rd | 20 ggstatsplot-0.0.9/ggstatsplot/man/bf_extractor.Rd | 42 ggstatsplot-0.0.9/ggstatsplot/man/bf_one_sample_ttest.Rd | 10 ggstatsplot-0.0.9/ggstatsplot/man/bf_oneway_anova.Rd | 7 ggstatsplot-0.0.9/ggstatsplot/man/bf_two_sample_ttest.Rd | 14 ggstatsplot-0.0.9/ggstatsplot/man/cat_counter.Rd |only ggstatsplot-0.0.9/ggstatsplot/man/cat_label_df.Rd |only ggstatsplot-0.0.9/ggstatsplot/man/chisq_v_ci.Rd | 23 ggstatsplot-0.0.9/ggstatsplot/man/combine_plots.Rd | 39 ggstatsplot-0.0.9/ggstatsplot/man/cor_test_ci.Rd | 22 ggstatsplot-0.0.9/ggstatsplot/man/effsize_t_parametric.Rd |only ggstatsplot-0.0.9/ggstatsplot/man/figures/README-ggbarstats1-1.png |only ggstatsplot-0.0.9/ggstatsplot/man/figures/README-ggbarstats2-1.png |only ggstatsplot-0.0.9/ggstatsplot/man/figures/README-ggbetweenstats1-1.png |binary ggstatsplot-0.0.9/ggstatsplot/man/figures/README-ggbetweenstats2-1.png |binary ggstatsplot-0.0.9/ggstatsplot/man/figures/README-ggbetweenstats3-1.png |binary ggstatsplot-0.0.9/ggstatsplot/man/figures/README-ggbetweenstats4-1.png |binary ggstatsplot-0.0.9/ggstatsplot/man/figures/README-ggcoefstats2-1.png |binary ggstatsplot-0.0.9/ggstatsplot/man/figures/README-ggdotplotstats1-1.png |binary ggstatsplot-0.0.9/ggstatsplot/man/figures/README-ggdotplotstats2-1.png |binary ggstatsplot-0.0.9/ggstatsplot/man/figures/README-gghistostats1-1.png |binary ggstatsplot-0.0.9/ggstatsplot/man/figures/README-gghistostats2-1.png |binary ggstatsplot-0.0.9/ggstatsplot/man/figures/README-gghistostats4-1.png |binary ggstatsplot-0.0.9/ggstatsplot/man/figures/README-ggpiestats2-1.png |binary ggstatsplot-0.0.9/ggstatsplot/man/figures/README-ggscatterstats1-1.png |binary ggstatsplot-0.0.9/ggstatsplot/man/figures/README-ggscatterstats3-1.png |binary ggstatsplot-0.0.9/ggstatsplot/man/figures/README-theme_ggstatsplot-1.png |binary ggstatsplot-0.0.9/ggstatsplot/man/figures/stats_reporting_format.png |only ggstatsplot-0.0.9/ggstatsplot/man/games_howell.Rd | 4 ggstatsplot-0.0.9/ggstatsplot/man/ggbarstats.Rd |only ggstatsplot-0.0.9/ggstatsplot/man/ggbetweenstats.Rd | 40 ggstatsplot-0.0.9/ggstatsplot/man/ggcoefstats.Rd | 76 - ggstatsplot-0.0.9/ggstatsplot/man/ggcorrmat.Rd | 4 ggstatsplot-0.0.9/ggstatsplot/man/ggdotplotstats.Rd | 19 ggstatsplot-0.0.9/ggstatsplot/man/gghistostats.Rd | 34 ggstatsplot-0.0.9/ggstatsplot/man/ggpiestats.Rd | 56 ggstatsplot-0.0.9/ggstatsplot/man/ggplot_converter.Rd |only ggstatsplot-0.0.9/ggstatsplot/man/ggscatterstats.Rd | 31 ggstatsplot-0.0.9/ggstatsplot/man/ggstatsplot-package.Rd | 6 ggstatsplot-0.0.9/ggstatsplot/man/grouped_ggbarstats.Rd |only ggstatsplot-0.0.9/ggstatsplot/man/grouped_ggbetweenstats.Rd | 52 ggstatsplot-0.0.9/ggstatsplot/man/grouped_ggcorrmat.Rd | 16 ggstatsplot-0.0.9/ggstatsplot/man/grouped_ggdotplotstats.Rd | 38 ggstatsplot-0.0.9/ggstatsplot/man/grouped_gghistostats.Rd | 56 ggstatsplot-0.0.9/ggstatsplot/man/grouped_ggpiestats.Rd | 60 ggstatsplot-0.0.9/ggstatsplot/man/grouped_ggscatterstats.Rd | 42 ggstatsplot-0.0.9/ggstatsplot/man/grouped_list.Rd |only ggstatsplot-0.0.9/ggstatsplot/man/kw_eta_h_ci.Rd | 22 ggstatsplot-0.0.9/ggstatsplot/man/line_labeller.Rd |only ggstatsplot-0.0.9/ggstatsplot/man/long_to_wide_converter.Rd | 4 ggstatsplot-0.0.9/ggstatsplot/man/mean_labeller.Rd | 4 ggstatsplot-0.0.9/ggstatsplot/man/normality_message.Rd | 23 ggstatsplot-0.0.9/ggstatsplot/man/pairwise_p.Rd | 6 ggstatsplot-0.0.9/ggstatsplot/man/pairwise_p_caption.Rd | 4 ggstatsplot-0.0.9/ggstatsplot/man/proptest_message.Rd |only ggstatsplot-0.0.9/ggstatsplot/man/robcor_ci.Rd | 18 ggstatsplot-0.0.9/ggstatsplot/man/subtitle_anova_bayes.Rd | 11 ggstatsplot-0.0.9/ggstatsplot/man/subtitle_anova_parametric.Rd | 15 ggstatsplot-0.0.9/ggstatsplot/man/subtitle_anova_robust.Rd | 11 ggstatsplot-0.0.9/ggstatsplot/man/subtitle_contingency_tab.Rd | 13 ggstatsplot-0.0.9/ggstatsplot/man/subtitle_friedman_nonparametric.Rd | 9 ggstatsplot-0.0.9/ggstatsplot/man/subtitle_ggscatterstats.Rd | 8 ggstatsplot-0.0.9/ggstatsplot/man/subtitle_kw_nonparametric.Rd | 9 ggstatsplot-0.0.9/ggstatsplot/man/subtitle_mann_nonparametric.Rd | 46 ggstatsplot-0.0.9/ggstatsplot/man/subtitle_meta_ggcoefstats.Rd | 71 - ggstatsplot-0.0.9/ggstatsplot/man/subtitle_onesample_proptest.Rd | 13 ggstatsplot-0.0.9/ggstatsplot/man/subtitle_t_bayes.Rd | 11 ggstatsplot-0.0.9/ggstatsplot/man/subtitle_t_onesample.Rd | 22 ggstatsplot-0.0.9/ggstatsplot/man/subtitle_t_parametric.Rd | 46 ggstatsplot-0.0.9/ggstatsplot/man/subtitle_t_robust.Rd | 15 ggstatsplot-0.0.9/ggstatsplot/man/subtitle_template.Rd | 18 ggstatsplot-0.0.9/ggstatsplot/man/t1way_ci.Rd | 26 ggstatsplot-0.0.9/ggstatsplot/man/theme_ggstatsplot.Rd | 4 ggstatsplot-0.0.9/ggstatsplot/man/theme_pie.Rd | 4 ggstatsplot-0.0.9/ggstatsplot/man/yuend_ci.Rd | 24 ggstatsplot-0.0.9/ggstatsplot/tests/README.md | 411 +++--- ggstatsplot-0.0.9/ggstatsplot/tests/testthat/helper-funs.R | 64 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_argument_count.R | 2 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_combine_plots.R | 2 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_cor_test_ci.R | 77 - ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_effsize_t_parametric.R |only ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_formals.R |only ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_ggbarstats.R |only ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_ggbetweenstats.R | 96 + ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_ggcoefstats.R | 184 +- ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_ggcoefstats_label_maker.R | 49 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_ggcorrmat.R | 21 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_ggdotplotstats.R | 7 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_gghistostats.R | 131 + ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_ggpiestats.R | 62 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_ggplot_converter.R |only ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_ggscatterstats.R | 42 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_grouped_ggbarstats.R |only ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_grouped_ggcorrmat.R | 96 + ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_grouped_ggdotplotstats.R | 3 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_grouped_gghistostats.R | 6 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_grouped_list.R |only ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_helper_messages.R | 95 + ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_helpers_bf_tests.R | 65 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_helpers_ggcatstats.R |only ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_histo_labeller.R | 18 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_kw_eta_h_ci.R | 46 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_line_labeller.R |only ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_lm_effsize_ci.R | 259 +++ ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_long_to_wide_converter.R | 1 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_mean_labeller.R | 35 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_numdf_summary.R | 1 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_pairwise_ggsignif.R | 5 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_robcor_ci.R | 60 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_subtitle_anova_bayes.R | 8 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_subtitle_contingency_tab.R | 4 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_subtitle_contingency_tab_gof.R | 39 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_subtitle_contingency_tab_paired.R | 2 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_subtitle_friedman_nonparametric.R | 2 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_subtitle_ggscatterstats.R | 8 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_subtitle_kw_nonparametric.R | 4 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_subtitle_mann_nonparametric.R | 180 ++ ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_subtitle_meta.R | 63 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_subtitle_t_bayes.R | 101 + ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_subtitle_t_onesample.R | 105 - ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_subtitle_t_parametric.R | 16 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_subtitle_templates.R | 75 + ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_t1way_ci.R | 94 - ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_theme_ggstatsplot.R | 23 ggstatsplot-0.0.9/ggstatsplot/tests/testthat/test_yuend_ci.R |only ggstatsplot-0.0.9/ggstatsplot/vignettes/additional.Rmd | 8 ggstatsplot-0.0.9/ggstatsplot/vignettes/web_only/combine_plots.Rmd | 3 ggstatsplot-0.0.9/ggstatsplot/vignettes/web_only/ggbetweenstats.Rmd | 16 ggstatsplot-0.0.9/ggstatsplot/vignettes/web_only/ggcoefstats.Rmd | 321 ++++ ggstatsplot-0.0.9/ggstatsplot/vignettes/web_only/gghistostats.Rmd | 2 ggstatsplot-0.0.9/ggstatsplot/vignettes/web_only/ggstatsplot_paper.Rmd | 13 ggstatsplot-0.0.9/ggstatsplot/vignettes/web_only/purrr_examples.Rmd | 136 +- 184 files changed, 5996 insertions(+), 3513 deletions(-)
Title: Cox Model for Case-Cohort Data with Stratified
Subcohort-Selection
Description: Contains a function, also called 'cchs', that calculates Estimator III of Borgan et al (2000), <DOI:10.1023/A:1009661900674>. This estimator is for fitting a Cox proportional hazards model to data from a case-cohort study where the subcohort was selected by stratified simple random sampling.
Author: E. Jones
Maintainer: E. Jones <edmundjones79@gmail.com>
Diff between cchs versions 0.4.0 dated 2017-08-26 and 0.4.1 dated 2019-02-18
DESCRIPTION | 10 +++++----- MD5 | 15 ++++++++------- R/argProcessingSubroutines.R | 2 +- R/cchs.R | 6 +++--- R/rowManipulationSubroutines.R | 2 +- data/cchsData.rda |binary inst |only man/cchs.Rd | 8 ++++---- man/cchsData.Rd | 6 +++--- 9 files changed, 25 insertions(+), 24 deletions(-)
Title: Automated Method for Verbal Autopsy
Description: Implements multiple existing open-source algorithms for coding cause of death from verbal autopsies. It also provides tools for data manipulation tasks commonly used in Verbal Autopsy analysis and implements easy graphical visualization of individual and population level statistics.
Author: Zehang Li, Tyler McCormick, Sam Clark
Maintainer: Zehang Li <lizehang@gmail.com>
Diff between openVA versions 1.0.7 dated 2018-09-13 and 1.0.8 dated 2019-02-18
openVA-1.0.7/openVA/inst |only openVA-1.0.8/openVA/DESCRIPTION | 12 +- openVA-1.0.8/openVA/MD5 | 20 ++-- openVA-1.0.8/openVA/NAMESPACE | 2 openVA-1.0.8/openVA/NEWS.md |only openVA-1.0.8/openVA/R/CSMF.r | 4 openVA-1.0.8/openVA/R/ConvertData.r | 117 ++++++++++++++++------------ openVA-1.0.8/openVA/R/update.R | 7 + openVA-1.0.8/openVA/man/codeVA.Rd | 13 +-- openVA-1.0.8/openVA/man/getCSMF_accuracy.Rd | 3 openVA-1.0.8/openVA/man/interVA.train.Rd | 6 - openVA-1.0.8/openVA/man/stackplotVA.Rd | 8 - 12 files changed, 110 insertions(+), 82 deletions(-)
Title: Seamless Integration Between R and 'Julia'
Description: Provides an R interface to 'Julia',
which is a high-level, high-performance dynamic programming language
for numerical computing, see <https://julialang.org/> for more information.
It provides a high-level interface as well as a low-level interface.
Using the high level interface, you could call any 'Julia' function just like
any R function with automatic type conversion. Using the low level interface,
you could deal with C-level SEXP directly while enjoying the convenience of
using a high-level programming language like 'Julia'.
Author: Changcheng Li [aut, cre],
Randy Lai [ctb],
Dmitri Grominski [ctb],
Nagi Teramo [ctb]
Maintainer: Changcheng Li <cxl508@psu.edu>
Diff between JuliaCall versions 0.16.2 dated 2019-01-02 and 0.16.4 dated 2019-02-18
DESCRIPTION | 12 +-- MD5 | 24 +++---- NAMESPACE | 2 NEWS.md | 16 ++++ R/JuliaObject.R | 14 +++- R/RMarkdown.R | 70 ++++++++++---------- README.md | 4 - inst/doc/JuliaCall_in_Jupyter_R_Notebook.html | 4 - inst/doc/Julia_in_RMarkdown.html | 4 - inst/julia/JuliaObject.jl | 88 ++++++++++++++------------ inst/julia/setup.jl | 7 +- tests/testthat/Rmd_test.md | 3 tests/testthat/test_JuliaObject.R | 18 +++++ 13 files changed, 162 insertions(+), 104 deletions(-)