Title: Simultaneous Generation of Multivariate Binary and Normal
Variates
Description: Generating multiple binary and normal variables simultaneously given marginal characteristics and association structure based on the methodology proposed by Demirtas and Doganay (2012) <DOI:10.1080/10543406.2010.521874>.
Author: Anup Amatya, Hakan Demirtas, Ran Gao
Maintainer: Ran Gao <rgao8@uic.edu>
Diff between BinNor versions 2.2 dated 2018-02-10 and 2.3 dated 2019-03-01
DESCRIPTION | 14 +-- MD5 | 10 +- R/compute.sigma.star.R | 129 ++++++++++++++---------------- man/BinNor-package.Rd | 81 +++++++++--------- man/compute.sigma.star.Rd | 106 ++++++++++++------------ man/jointly.generate.binary.normal.Rd | 146 +++++++++++++++++----------------- 6 files changed, 243 insertions(+), 243 deletions(-)
Title: Easily Tidy Data with 'spread()' and 'gather()' Functions
Description: An evolution of 'reshape2'. It's designed
specifically for data tidying (not general reshaping or aggregating)
and works well with 'dplyr' data pipelines.
Author: Hadley Wickham [aut, cre],
Lionel Henry [aut],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between tidyr versions 0.8.2 dated 2018-10-28 and 0.8.3 dated 2019-03-01
DESCRIPTION | 34 +++++++++------- MD5 | 72 +++++++++++++++++----------------- NAMESPACE | 5 -- NEWS.md | 16 +++++++ R/expand.R | 26 ++++++++---- R/fill.R | 6 ++ R/gather.R | 12 ++--- R/id.R | 2 R/nest.R | 25 +++++++++-- R/replace_na.R | 3 + R/separate-rows.R | 8 ++- R/separate.R | 17 +++++++- R/spread.R | 20 +++++++-- R/tidyr.R | 9 +--- R/unite.R | 2 R/unnest.R | 20 ++++++--- README.md | 28 ++++++++++--- build/vignette.rds |binary inst/doc/tidy-data.html | 76 ++++++++++++++++++++++-------------- man/complete.Rd | 3 - man/deprecated-se.Rd | 5 +- man/expand.Rd | 12 +++++ man/figures/logo.png |binary man/fill.Rd | 11 ++--- man/gather.Rd | 12 ++--- man/replace_na.Rd | 5 ++ man/separate.Rd | 17 +++++++- man/separate_rows.Rd | 9 +--- man/spread.Rd | 2 man/tidyr-package.Rd | 6 +- man/unite.Rd | 2 tests/testthat/test-expand.R | 16 +++++++ tests/testthat/test-id.R | 7 ++- tests/testthat/test-nest.R | 36 ++++++++++++++--- tests/testthat/test-separate-rows.R | 2 tests/testthat/test-spread.R | 34 ++++++++++++++-- tests/testthat/test-unnest.R | 22 +++++++++- 37 files changed, 415 insertions(+), 167 deletions(-)
Title: Multidimensional Penalized Splines for Survival and Net Survival
Models
Description: Fits hazard and excess hazard models with multidimensional penalized splines allowing for time-dependent effects, non-linear effects and interactions between several continuous covariates.
Author: Mathieu Fauvernier
Maintainer: Mathieu Fauvernier <mathieu.fauvernier@gmail.com>
Diff between survPen versions 1.0.0 dated 2019-02-27 and 1.0.1 dated 2019-03-01
survPen-1.0.0/survPen/R/survPenV1_00.r |only survPen-1.0.1/survPen/DESCRIPTION | 6 +- survPen-1.0.1/survPen/MD5 | 57 ++++++++++----------- survPen-1.0.1/survPen/NEWS |only survPen-1.0.1/survPen/R/survPenV1_01.r |only survPen-1.0.1/survPen/man/NR.beta.Rd | 2 survPen-1.0.1/survPen/man/NR.rho.Rd | 2 survPen-1.0.1/survPen/man/constraint.Rd | 2 survPen-1.0.1/survPen/man/cor.var.Rd | 2 survPen-1.0.1/survPen/man/crs.FP.Rd | 2 survPen-1.0.1/survPen/man/crs.Rd | 2 survPen-1.0.1/survPen/man/datCancer.Rd | 2 survPen-1.0.1/survPen/man/design.matrix.Rd | 2 survPen-1.0.1/survPen/man/instr.Rd | 2 survPen-1.0.1/survPen/man/inv.repam.Rd | 2 survPen-1.0.1/survPen/man/model.cons.Rd | 2 survPen-1.0.1/survPen/man/predict.survPen.Rd | 2 survPen-1.0.1/survPen/man/print.summary.survPen.Rd | 2 survPen-1.0.1/survPen/man/rd.Rd | 2 survPen-1.0.1/survPen/man/repam.Rd | 2 survPen-1.0.1/survPen/man/smf.Rd | 2 survPen-1.0.1/survPen/man/smooth.cons.Rd | 2 survPen-1.0.1/survPen/man/smooth.cons.integral.Rd | 2 survPen-1.0.1/survPen/man/smooth.spec.Rd | 2 survPen-1.0.1/survPen/man/summary.survPen.Rd | 4 - survPen-1.0.1/survPen/man/survPen.Rd | 2 survPen-1.0.1/survPen/man/survPen.fit.Rd | 2 survPen-1.0.1/survPen/man/survPenObject.Rd | 5 + survPen-1.0.1/survPen/man/tensor.in.Rd | 2 survPen-1.0.1/survPen/man/tensor.prod.S.Rd | 2 survPen-1.0.1/survPen/man/tensor.prod.X.Rd | 2 31 files changed, 61 insertions(+), 59 deletions(-)
Title: Threshold Selection and Uncertainty for Extreme Value Analysis
Description: Provides functions for the selection of thresholds for use in
extreme value models, based mainly on the methodology in
Northrop, Attalides and Jonathan (2017) <doi:10.1111/rssc.12159>.
It also performs predictive inferences about future extreme values,
based either on a single threshold or on a weighted average of inferences
from multiple thresholds, using the 'revdbayes' package
<https://cran.r-project.org/package=revdbayes>.
At the moment only the case where the data can be treated as
independent identically distributed observations is considered.
Author: Paul J. Northrop [aut, cre, cph],
Nicolas Attalides [aut]
Maintainer: Paul J. Northrop <p.northrop@ucl.ac.uk>
Diff between threshr versions 1.0.0 dated 2017-09-04 and 1.0.1 dated 2019-03-01
DESCRIPTION | 14 MD5 | 47 - NEWS.md |only R/ithresh.R | 1000 +++++++++++++------------- R/parameter_stability.R | 488 ++++++------- R/plot_and_summary.R | 1230 ++++++++++++++++----------------- R/predictive.R | 652 ++++++++--------- R/threshr.R | 32 README.md | 11 build/vignette.rds |binary inst/doc/threshr-vignette.R | 4 inst/doc/threshr-vignette.Rmd | 232 +++--- inst/doc/threshr-vignette.html | 22 man/gom.Rd | 10 man/ithresh.Rd | 12 man/ns.Rd | 10 man/plot.ithresh.Rd | 4 man/plot.ithreshpred.Rd | 7 man/plot.stability.Rd | 2 man/predict.ithresh.Rd | 7 man/stability.Rd | 2 man/summary.ithresh.Rd | 4 tests/testthat/test_ithresh.R | 84 +- tests/testthat/test_plot_and_summary.R | 334 ++++---- vignettes/threshr-vignette.Rmd | 232 +++--- 25 files changed, 2223 insertions(+), 2217 deletions(-)
Title: R Bindings for 'ZeroMQ'
Description: Interface to the 'ZeroMQ' lightweight messaging kernel (see <http://www.zeromq.org/> for more information).
Author: Whit Armstrong [aut],
Michael Schubert [ctb],
Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between rzmq versions 0.9.4 dated 2018-09-18 and 0.9.6 dated 2019-03-01
DESCRIPTION | 6 ++-- MD5 | 8 ++--- NEWS | 6 ++++ src/Makevars.win | 9 ++---- src/interface.cpp | 77 ++++++++++++++++++++++++++++++++---------------------- 5 files changed, 63 insertions(+), 43 deletions(-)
Title: Genotype Quality Control with 'PLINK'
Description: Genotyping arrays enable the direct measurement of an individuals
genotype at thousands of markers. 'plinkQC' facilitates genotype quality
control for genetic association studies as described by Anderson and
colleagues (2010) <doi:10.1038/nprot.2010.116>. It makes 'PLINK' basic
statistics (e.g. missing genotyping rates per individual, allele frequencies
per genetic marker) and relationship functions accessible from 'R' and
generates a per-individual and per-marker quality control report.
Individuals and markers that fail the quality control can subsequently be
removed to generate a new, clean dataset. Removal of individuals based on
relationship status is optimised to retain as many individuals as possible
in the study.
Author: Hannah Meyer [aut, cre] (<https://orcid.org/0000-0003-4564-0899>)
Maintainer: Hannah Meyer <hannah.v.meyer@gmail.com>
Diff between plinkQC versions 0.2.0 dated 2018-11-09 and 0.2.1 dated 2019-03-01
plinkQC-0.2.0/plinkQC/vignettes/Genomes1000.md |only plinkQC-0.2.0/plinkQC/vignettes/HapMap.md |only plinkQC-0.2.1/plinkQC/DESCRIPTION | 10 +- plinkQC-0.2.1/plinkQC/MD5 | 56 +++++++++------ plinkQC-0.2.1/plinkQC/NEWS.md | 5 + plinkQC-0.2.1/plinkQC/R/individualQC.R | 56 +++++++++------ plinkQC-0.2.1/plinkQC/R/utils.R | 10 +- plinkQC-0.2.1/plinkQC/README.md | 4 - plinkQC-0.2.1/plinkQC/build/vignette.rds |binary plinkQC-0.2.1/plinkQC/inst/doc/AncestryCheck.pdf |binary plinkQC-0.2.1/plinkQC/inst/doc/Genomes1000.pdf |binary plinkQC-0.2.1/plinkQC/inst/doc/HapMap.pdf |binary plinkQC-0.2.1/plinkQC/inst/doc/plinkQC.R | 3 plinkQC-0.2.1/plinkQC/inst/doc/plinkQC.Rmd | 3 plinkQC-0.2.1/plinkQC/inst/doc/plinkQC.pdf |binary plinkQC-0.2.1/plinkQC/inst/extdata |only plinkQC-0.2.1/plinkQC/man/check_het_and_miss.Rd | 8 +- plinkQC-0.2.1/plinkQC/man/check_sex.Rd | 5 + plinkQC-0.2.1/plinkQC/man/evaluate_check_het_and_miss.Rd | 5 + plinkQC-0.2.1/plinkQC/man/evaluate_check_sex.Rd | 7 + plinkQC-0.2.1/plinkQC/man/perIndividualQC.Rd | 8 +- plinkQC-0.2.1/plinkQC/tests/testthat/test-applyQC.R | 20 ----- plinkQC-0.2.1/plinkQC/vignettes/plinkQC.Rmd | 3 23 files changed, 117 insertions(+), 86 deletions(-)
Title: A Laboratory for Recursive Partytioning
Description: A computational toolbox for recursive partitioning.
The core of the package is ctree(), an implementation of
conditional inference trees which embed tree-structured
regression models into a well defined theory of conditional
inference procedures. This non-parametric class of regression
trees is applicable to all kinds of regression problems, including
nominal, ordinal, numeric, censored as well as multivariate response
variables and arbitrary measurement scales of the covariates.
Based on conditional inference trees, cforest() provides an
implementation of Breiman's random forests. The function mob()
implements an algorithm for recursive partitioning based on
parametric models (e.g. linear models, GLMs or survival
regression) employing parameter instability tests for split
selection. Extensible functionality for visualizing tree-structured
regression models is available. The methods are described in
Hothorn et al. (2006) <doi:10.1198/106186006X133933>,
Zeileis et al. (2008) <doi:10.1198/106186008X319331> and
Strobl et al. (2007) <doi:10.1186/1471-2105-8-25>.
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>),
Kurt Hornik [aut],
Carolin Strobl [aut],
Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>)
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between party versions 1.3-1 dated 2018-08-08 and 1.3-2 dated 2019-03-01
DESCRIPTION | 8 ++++---- MD5 | 27 ++++++++++++++------------- NAMESPACE | 3 --- R/Classes.R | 20 +++++++++++++++++++- R/Utils.R | 6 +++--- build/vignette.rds |binary inst/NEWS | 5 +++++ inst/doc/MOB.pdf |binary inst/doc/party.pdf |binary tests/Examples/party-Ex.Rout.save | 16 +++++++++------- tests/RandomForest-regtest.R | 1 + tests/RandomForest-regtest.Rout.save | 10 +++++++--- tests/bugfixes.R | 1 + tests/bugfixes.Rout.save | 10 +++++++--- vignettes/party.tpt |only 15 files changed, 70 insertions(+), 37 deletions(-)
Title: Inferring Causal Network from Mixed Observational Data Using a
Directed Acyclic Graph
Description: Learning a mixed directed acyclic graph based on both continuous and categorical data.
Author: Wujuan Zhong, Li Dong
Maintainer: Wujuan Zhong <zhongwujuan@gmail.com>
Diff between mDAG versions 1.0 dated 2019-02-26 and 1.1 dated 2019-03-01
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 2 ++ R/mDAG.R | 2 +- src/Makevars | 2 +- 5 files changed, 12 insertions(+), 10 deletions(-)
Title: Multiple Precision Arithmetic
Description: Multiple Precision Arithmetic (big integers and rationals,
prime number tests, matrix computation), "arithmetic without limitations"
using the C library GMP (GNU Multiple Precision Arithmetic).
Author: Antoine Lucas, Immanuel Scholz, Rainer Boehme <rb-gmp@reflex-studio.de>,
Sylvain Jasson <jasson@toulouse.inra.fr>,
Martin Maechler <maechler@stat.math.ethz.ch>
Maintainer: Antoine Lucas <antoinelucas@gmail.com>
Diff between gmp versions 0.5-13.2 dated 2018-07-14 and 0.5-13.4 dated 2019-03-01
DESCRIPTION | 8 ++++---- MD5 | 38 +++++++++++++++++++------------------- data/Oakley1.R | 4 ++-- data/Oakley2.R | 4 ++-- man/bigrational.Rd | 2 +- man/operators_bigq.Rd | 4 +--- src/Makevars.win | 3 +++ src/biginteger.h | 1 + src/bigintegerR.cc | 17 +++++++++++------ src/bigintegerR.h | 12 ++++++++++++ src/bigmod.h | 2 ++ src/bigrationalR.cc | 11 ++++++++--- src/bigvec.cc | 2 +- src/bigvec.h | 2 ++ src/bigvec_q.h | 2 ++ src/extract_matrix.h | 16 ++++++++++------ src/factorize.cc | 39 ++++++++++++--------------------------- src/matrix.cc | 9 +++++++-- src/solve.cc | 16 ++++++++-------- src/solve.h | 4 ++-- 20 files changed, 110 insertions(+), 86 deletions(-)
Title: Econometric Analysis of Explosive Time Series
Description: Testing for and dating periods of explosive dynamics (exuberance) in time series
using the univariate and panel recursive unit root tests proposed by Phillips et al. (2015)
<doi:10.1111/iere.12132> and Pavlidis et al. (2016) <doi:10.1007/s11146-015-9531-2>.
The recursive least-squares algorithm utilizes the matrix inversion lemma to avoid matrix
inversion which results in significant speed improvements. Simulation of a variety of
periodically-collapsing bubble processes.
Author: Kostas Vasilopoulos [cre, aut],
Efthymios Pavlidis [aut],
Simon Spavound [aut],
Enríque Martínez-García [aut]
Maintainer: Kostas Vasilopoulos <k.vasilopoulo@gmail.com>
Diff between exuber versions 0.2.0 dated 2019-02-04 and 0.2.1 dated 2019-03-01
DESCRIPTION | 31 ++++++++++++++++--------------- MD5 | 28 ++++++++++++++-------------- NAMESPACE | 3 ++- NEWS.md | 11 +++++++++-- R/autoplot.R | 5 ++--- R/exuber-package.r | 14 +++++++------- R/simul.R | 2 +- R/summary.R | 19 ++++++++++--------- R/utils.R | 2 +- R/zzz.R | 6 +++++- README.md | 2 +- inst/CITATION | 16 ++++++++-------- man/exuber.Rd | 17 ++++++++--------- man/sim_dgp2.Rd | 2 +- tests/testthat/test-summary.R | 2 +- 15 files changed, 86 insertions(+), 74 deletions(-)
Title: Big Data Mapping
Description: Unsupervised clustering protocol for large scale structured data, based on a low dimensional representation of the data. Dimensionality reduction is performed using a parallelized implementation of the t-Stochastic Neighboring Embedding algorithm (Garriga J. and Bartumeus F. (2018), <arXiv:1812.09869>).
Author: Joan Garriga [aut, cre],
Frederic Bartumeus [aut]
Maintainer: Joan Garriga <jgarriga@ceab.csic.es>
Diff between bigMap versions 2.0.0 dated 2019-02-01 and 2.1.0 dated 2019-03-01
DESCRIPTION | 8 +++---- MD5 | 46 ++++++++++++++++++++-------------------- NEWS.md | 8 +++++-- R/bdm_dMap.R | 18 +++++++++------ R/bdm_env.R | 2 - R/bdm_main.R | 50 ++++++++++++++++++++++++++------------------ R/bdm_plot.R | 2 - R/bdm_qMap.R | 2 + inst/doc/bigMap_qckref.Rmd | 4 +-- inst/doc/bigMap_qckref.pdf |binary inst/extdata/exMap.RData |binary man/bdm.cost.Rd | 2 - man/bdm.dMap.Rd | 5 ++-- man/bdm.dMap.plot.Rd | 13 +++++++---- man/bdm.example.Rd | 5 ++-- man/bdm.fName.Rd | 4 +-- man/bdm.init.Rd | 6 ++--- man/bdm.labels.Rd | 2 - man/bdm.pakde.Rd | 16 +++++++------- man/bdm.ptsne.Rd | 11 +++++---- man/bdm.qMap.Rd | 2 - man/bdm.save.Rd | 2 - man/bdm.wtt.Rd | 2 - vignettes/bigMap_qckref.Rmd | 4 +-- 24 files changed, 121 insertions(+), 93 deletions(-)
Title: Calculating Concentration Risk under Solvency II
Description: Methods for determining spatial risk, in particular calculating the maximum value of insured fire risk policies of all buildings that are partly or fully located within circle of a radius of 200m.
Author: Martin Haringa
Maintainer: Martin Haringa <mtharinga@gmail.com>
Diff between spatialrisk versions 0.4.1 dated 2018-10-28 and 0.5.1 dated 2019-03-01
DESCRIPTION | 10 +++---- MD5 | 6 ++-- NEWS.md | 4 +++ src/haversine_cpp.cpp | 65 ++++++++++++++++++++++++++------------------------ 4 files changed, 46 insertions(+), 39 deletions(-)
Title: Phonetic Spelling Algorithms
Description: Provides a collection of phonetic algorithms including
Soundex, Metaphone, NYSIIS, Caverphone, and others.
Author: James P. Howard, II [aut, cre],
Oliver Keyes [ctb]
Maintainer: "James P. Howard, II" <jh@jameshoward.us>
Diff between phonics versions 1.2.3 dated 2019-01-09 and 1.3.0 dated 2019-03-01
phonics-1.2.3/phonics/man/phonics-package.Rd |only phonics-1.3.0/phonics/DESCRIPTION | 10 phonics-1.3.0/phonics/MD5 | 121 +++---- phonics-1.3.0/phonics/NAMESPACE | 3 phonics-1.3.0/phonics/R/RcppExports.R | 96 ----- phonics-1.3.0/phonics/R/caverphone.R | 41 +- phonics-1.3.0/phonics/R/cologne.R | 47 +- phonics-1.3.0/phonics/R/lein.R | 36 +- phonics-1.3.0/phonics/R/metaphone.R |only phonics-1.3.0/phonics/R/mra.R | 44 ++ phonics-1.3.0/phonics/R/nysiis.R | 51 +-- phonics-1.3.0/phonics/R/onca.R | 32 + phonics-1.3.0/phonics/R/phonex.R | 42 +- phonics-1.3.0/phonics/R/phonics.R | 138 +++++++- phonics-1.3.0/phonics/R/rogerroot.R | 36 +- phonics-1.3.0/phonics/R/soundex.R |only phonics-1.3.0/phonics/R/statcan.R | 36 +- phonics-1.3.0/phonics/README.md | 2 phonics-1.3.0/phonics/inst/CITATION | 8 phonics-1.3.0/phonics/inst/COPYRIGHTS | 2 phonics-1.3.0/phonics/inst/doc/phonics.html | 4 phonics-1.3.0/phonics/man/caverphone.Rd | 24 - phonics-1.3.0/phonics/man/cologne.Rd | 31 + phonics-1.3.0/phonics/man/lein.Rd | 23 - phonics-1.3.0/phonics/man/metaphone.Rd | 37 +- phonics-1.3.0/phonics/man/mra.Rd | 23 - phonics-1.3.0/phonics/man/nysiis.Rd | 23 - phonics-1.3.0/phonics/man/onca.Rd | 28 + phonics-1.3.0/phonics/man/phonex.Rd | 24 - phonics-1.3.0/phonics/man/phonics.Rd |only phonics-1.3.0/phonics/man/rogerroot.Rd | 23 - phonics-1.3.0/phonics/man/soundex.Rd | 24 + phonics-1.3.0/phonics/man/statcan.Rd | 22 - phonics-1.3.0/phonics/src/RcppExports.cpp | 30 - phonics-1.3.0/phonics/src/metaphone.cpp | 47 -- phonics-1.3.0/phonics/src/soundex.cpp | 51 --- phonics-1.3.0/phonics/tests/testthat/caverphone-modified.csv | 9 phonics-1.3.0/phonics/tests/testthat/caverphone.csv | 7 phonics-1.3.0/phonics/tests/testthat/cologne.csv | 6 phonics-1.3.0/phonics/tests/testthat/lein.csv | 8 phonics-1.3.0/phonics/tests/testthat/metaphone.csv | 10 phonics-1.3.0/phonics/tests/testthat/mra-encode.csv | 5 phonics-1.3.0/phonics/tests/testthat/nysiis-modified.csv | 7 phonics-1.3.0/phonics/tests/testthat/nysiis.csv | 9 phonics-1.3.0/phonics/tests/testthat/onca-modified-refined.csv |only phonics-1.3.0/phonics/tests/testthat/onca-modified.csv |only phonics-1.3.0/phonics/tests/testthat/onca-refined.csv |only phonics-1.3.0/phonics/tests/testthat/onca.csv | 8 phonics-1.3.0/phonics/tests/testthat/phonex.csv | 17 - phonics-1.3.0/phonics/tests/testthat/phonics.csv |only phonics-1.3.0/phonics/tests/testthat/rogerroot.csv | 9 phonics-1.3.0/phonics/tests/testthat/soundex-refined.csv | 4 phonics-1.3.0/phonics/tests/testthat/soundex.csv | 4 phonics-1.3.0/phonics/tests/testthat/statcan.csv | 11 phonics-1.3.0/phonics/tests/testthat/test-caverphone.R | 86 ++++- phonics-1.3.0/phonics/tests/testthat/test-cologne.R | 42 ++ phonics-1.3.0/phonics/tests/testthat/test-lein.R | 44 ++ phonics-1.3.0/phonics/tests/testthat/test-metaphone.R | 34 +- phonics-1.3.0/phonics/tests/testthat/test-mra.R | 44 ++ phonics-1.3.0/phonics/tests/testthat/test-nysiis.R | 88 ++++- phonics-1.3.0/phonics/tests/testthat/test-onca.R | 162 +++++++++- phonics-1.3.0/phonics/tests/testthat/test-phonex.R | 42 ++ phonics-1.3.0/phonics/tests/testthat/test-phonics.R |only phonics-1.3.0/phonics/tests/testthat/test-rogerroot.R | 44 ++ phonics-1.3.0/phonics/tests/testthat/test-soundex.R | 68 +++- phonics-1.3.0/phonics/tests/testthat/test-statcan.R | 42 ++ 66 files changed, 1352 insertions(+), 617 deletions(-)
Title: Support Functions and Datasets for Venables and Ripley's MASS
Description: Functions and datasets to support Venables and Ripley,
"Modern Applied Statistics with S" (4th edition, 2002).
Author: Brian Ripley [aut, cre, cph],
Bill Venables [ctb],
Douglas M. Bates [ctb],
Kurt Hornik [trl] (partial port ca 1998),
Albrecht Gebhardt [trl] (partial port ca 1998),
David Firth [ctb]
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>
Diff between MASS versions 7.3-51.1 dated 2018-11-01 and 7.3-51.2 dated 2019-03-01
DESCRIPTION | 8 +++--- MD5 | 4 +-- tests/Examples/MASS-Ex.Rout.save | 45 +++++++++++++++++++-------------------- 3 files changed, 28 insertions(+), 29 deletions(-)
Title: Bootstrap Functions (Originally by Angelo Canty for S)
Description: Functions and datasets for bootstrapping from the
book "Bootstrap Methods and Their Application" by A. C. Davison and
D. V. Hinkley (1997, CUP), originally written by Angelo Canty for S.
Author: Angelo Canty [aut],
Brian Ripley [aut, trl, cre] (author of parallel support)
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>
Diff between boot versions 1.3-20 dated 2017-07-30 and 1.3-21 dated 2019-03-01
ChangeLog | 4 DESCRIPTION | 8 MD5 | 30 +-- inst/po/de/LC_MESSAGES/R-boot.mo |binary inst/po/en@quot/LC_MESSAGES/R-boot.mo |binary inst/po/fr/LC_MESSAGES/R-boot.mo |binary inst/po/ko/LC_MESSAGES/R-boot.mo |binary inst/po/pl/LC_MESSAGES/R-boot.mo |binary inst/po/ru/LC_MESSAGES/R-boot.mo |binary po/R-boot.pot | 7 po/R-de.po | 6 po/R-fr.po | 6 po/R-ko.po | 54 ++++- po/R-pl.po | 8 po/R-ru.po | 25 ++ tests/Examples/boot-Ex.Rout.save | 308 +++++++++++++++------------------- 16 files changed, 241 insertions(+), 215 deletions(-)
Title: Psychometric Functions from the Waller Lab
Description: Computes fungible coefficients and Monte Carlo data. Underlying theory for these functions is described in the following publications:
Waller, N. (2008). Fungible Weights in Multiple Regression. Psychometrika, 73(4), 691-703, <DOI:10.1007/s11336-008-9066-z>.
Waller, N. & Jones, J. (2009). Locating the Extrema of Fungible Regression Weights.
Psychometrika, 74(4), 589-602, <DOI:10.1007/s11336-008-9087-7>.
Waller, N. G. (2016). Fungible Correlation Matrices:
A Method for Generating Nonsingular, Singular, and Improper Correlation Matrices for
Monte Carlo Research. Multivariate Behavioral Research, 51(4), 554-568, <DOI:10.1080/00273171.2016.1178566>.
Jones, J. A. & Waller, N. G. (2015). The normal-theory and asymptotic distribution-free (ADF)
covariance matrix of standardized regression coefficients: theoretical extensions
and finite sample behavior. Psychometrika, 80, 365-378, <DOI:10.1007/s11336-013-9380-y>.
Waller, N. G. (2018). Direct Schmid-Leiman transformations and rank-deficient loadings matrices. Psychometrika, 83, 858-870. <DOI:10.1007/s11336-017-9599-0>.
Author: Niels Waller [aut, cre],
Jeff Jones [ctb],
Casey Giordano [ctb]
Maintainer: Niels Waller <nwaller@umn.edu>
Diff between fungible versions 1.76 dated 2019-01-25 and 1.79 dated 2019-03-01
fungible-1.76/fungible/R/rotate.R |only fungible-1.76/fungible/man/rotate.Rd |only fungible-1.79/fungible/DESCRIPTION | 42 +- fungible-1.79/fungible/MD5 | 286 +++++++------ fungible-1.79/fungible/NAMESPACE | 116 ++++- fungible-1.79/fungible/R/BiFAD.R | 280 +++++++++---- fungible-1.79/fungible/R/FMP.R | 140 ++++++ fungible-1.79/fungible/R/FMPMonotonicityCheck.R | 34 + fungible-1.79/fungible/R/FUP.R | 121 +++++ fungible-1.79/fungible/R/Omega.R | 2 fungible-1.79/fungible/R/RnpdMAP.R | 142 ++++++ fungible-1.79/fungible/R/SLi.R | 262 +++++------- fungible-1.79/fungible/R/SchmidLeiman.R | 321 +++++---------- fungible-1.79/fungible/R/Standardize.R |only fungible-1.79/fungible/R/adfCor.R | 57 ++ fungible-1.79/fungible/R/adfCov.R | 55 ++ fungible-1.79/fungible/R/bigen.R | 82 +++ fungible-1.79/fungible/R/corSample.R | 30 + fungible-1.79/fungible/R/corSmooth.R | 37 + fungible-1.79/fungible/R/d2r.r | 17 fungible-1.79/fungible/R/eap.R | 77 +++ fungible-1.79/fungible/R/eigGen.R | 46 ++ fungible-1.79/fungible/R/enhancement.R | 50 ++ fungible-1.79/fungible/R/erf.R | 63 +++ fungible-1.79/fungible/R/faAlign.R | 155 +++++++ fungible-1.79/fungible/R/faMAP.R | 65 +++ fungible-1.79/fungible/R/faMain.R |only fungible-1.79/fungible/R/faSort.R | 78 +++ fungible-1.79/fungible/R/faX.R | 310 ++++++++++----- fungible-1.79/fungible/R/fals.R | 33 + fungible-1.79/fungible/R/fapa.R | 26 - fungible-1.79/fungible/R/fungible-package.R |only fungible-1.79/fungible/R/fungible.R | 56 ++ fungible-1.79/fungible/R/fungibleExtrema.R | 70 +++ fungible-1.79/fungible/R/fungibleL.R | 85 ++++ fungible-1.79/fungible/R/fungibleR.R | 241 +++++++++++ fungible-1.79/fungible/R/gen4PMData.R | 61 ++ fungible-1.79/fungible/R/genCorr.R | 47 ++ fungible-1.79/fungible/R/genFMPData.R | 65 +++ fungible-1.79/fungible/R/irf.R | 82 +++ fungible-1.79/fungible/R/itemDescriptives.R | 70 +++ fungible-1.79/fungible/R/kurt.R | 21 + fungible-1.79/fungible/R/monte.R | 386 ++++++++++++++++++ fungible-1.79/fungible/R/monte1.R | 48 ++ fungible-1.79/fungible/R/normF.R | 22 + fungible-1.79/fungible/R/normalCor.R | 22 + fungible-1.79/fungible/R/plot.monte.R | 17 fungible-1.79/fungible/R/print.summary.monte.R | 4 fungible-1.79/fungible/R/print.summary.monte1.R | 2 fungible-1.79/fungible/R/promaxQ.R | 186 ++++----- fungible-1.79/fungible/R/r2d.r | 17 fungible-1.79/fungible/R/rGivens.R | 61 ++ fungible-1.79/fungible/R/rMAP.R | 43 ++ fungible-1.79/fungible/R/rarc.R | 80 +++ fungible-1.79/fungible/R/rcone.R | 43 ++ fungible-1.79/fungible/R/rcor.R | 28 + fungible-1.79/fungible/R/rellipsoid.R | 53 ++ fungible-1.79/fungible/R/restScore.R | 60 ++ fungible-1.79/fungible/R/rmsd.R | 31 + fungible-1.79/fungible/R/seBeta.R | 56 ++ fungible-1.79/fungible/R/seBetaCor.R | 433 +++++++++++---------- fungible-1.79/fungible/R/seBetaFixed.R | 67 +++ fungible-1.79/fungible/R/skew.R | 19 fungible-1.79/fungible/R/smoothAPA.R | 108 +++++ fungible-1.79/fungible/R/smoothBY.R | 49 ++ fungible-1.79/fungible/R/smoothKB.R | 31 + fungible-1.79/fungible/R/smoothLG.R | 68 +++ fungible-1.79/fungible/R/summary.monte.R | 59 ++ fungible-1.79/fungible/R/summary.monte1.R | 35 + fungible-1.79/fungible/R/svdNorm.R | 54 ++ fungible-1.79/fungible/R/tetcor.R | 69 +++ fungible-1.79/fungible/R/tetcorQuasi.R | 44 ++ fungible-1.79/fungible/R/vcos.r | 18 fungible-1.79/fungible/R/vnorm.r | 20 fungible-1.79/fungible/inst/CITATION | 4 fungible-1.79/fungible/inst/doc |only fungible-1.79/fungible/man/BadRBY.Rd | 21 - fungible-1.79/fungible/man/BadRJN.Rd | 20 fungible-1.79/fungible/man/BadRKtB.Rd | 22 - fungible-1.79/fungible/man/BadRLG.Rd | 21 - fungible-1.79/fungible/man/BadRRM.Rd | 21 - fungible-1.79/fungible/man/BiFAD.Rd | 204 +++++++-- fungible-1.79/fungible/man/FMP.Rd | 90 ++-- fungible-1.79/fungible/man/FMPMonotonicityCheck.Rd | 40 + fungible-1.79/fungible/man/FUP.Rd | 59 +- fungible-1.79/fungible/man/HS9Var.Rd | 60 +- fungible-1.79/fungible/man/RnpdMAP.Rd | 93 ++-- fungible-1.79/fungible/man/SLi.Rd | 118 ++++- fungible-1.79/fungible/man/SchmidLeiman.Rd | 134 ++++-- fungible-1.79/fungible/man/Standardize.Rd |only fungible-1.79/fungible/man/adfCor.Rd | 41 + fungible-1.79/fungible/man/adfCov.Rd | 33 - fungible-1.79/fungible/man/bigen.Rd | 50 +- fungible-1.79/fungible/man/corSample.Rd | 34 + fungible-1.79/fungible/man/corSmooth.Rd | 34 + fungible-1.79/fungible/man/cosMat.Rd | 10 fungible-1.79/fungible/man/d2r.Rd | 16 fungible-1.79/fungible/man/eap.Rd | 42 +- fungible-1.79/fungible/man/eigGen.Rd | 109 ++--- fungible-1.79/fungible/man/enhancement.Rd | 40 + fungible-1.79/fungible/man/erf.Rd | 43 +- fungible-1.79/fungible/man/faAlign.Rd | 106 +++-- fungible-1.79/fungible/man/faMAP.Rd | 62 +-- fungible-1.79/fungible/man/faMain.Rd |only fungible-1.79/fungible/man/faSort.Rd | 85 ++-- fungible-1.79/fungible/man/faX.Rd | 103 +++- fungible-1.79/fungible/man/fals.Rd | 56 +- fungible-1.79/fungible/man/fapa.Rd | 15 fungible-1.79/fungible/man/fungible.Rd | 54 +- fungible-1.79/fungible/man/fungibleExtrema.Rd | 64 +-- fungible-1.79/fungible/man/fungibleL.Rd | 93 ++-- fungible-1.79/fungible/man/fungibleR.Rd | 100 ++-- fungible-1.79/fungible/man/gen4PMData.Rd | 55 +- fungible-1.79/fungible/man/genCorr.Rd | 43 +- fungible-1.79/fungible/man/genFMPData.Rd | 48 +- fungible-1.79/fungible/man/irf.Rd | 52 +- fungible-1.79/fungible/man/itemDescriptives.Rd | 46 +- fungible-1.79/fungible/man/kurt.Rd | 34 - fungible-1.79/fungible/man/monte.Rd | 109 +++-- fungible-1.79/fungible/man/monte1.Rd | 54 +- fungible-1.79/fungible/man/normF.Rd | 23 - fungible-1.79/fungible/man/normalCor.Rd | 34 + fungible-1.79/fungible/man/plot.monte.Rd | 22 - fungible-1.79/fungible/man/promaxQ.Rd | 101 +++- fungible-1.79/fungible/man/r2d.Rd | 16 fungible-1.79/fungible/man/rGivens.Rd | 44 +- fungible-1.79/fungible/man/rMAP.Rd | 104 ++--- fungible-1.79/fungible/man/rarc.Rd | 50 +- fungible-1.79/fungible/man/rcone.Rd | 48 +- fungible-1.79/fungible/man/rcor.Rd | 37 + fungible-1.79/fungible/man/rellipsoid.Rd | 42 +- fungible-1.79/fungible/man/restScore.Rd | 37 + fungible-1.79/fungible/man/rmsd.Rd | 46 +- fungible-1.79/fungible/man/seBeta.Rd | 131 +++--- fungible-1.79/fungible/man/seBetaCor.Rd | 123 +++-- fungible-1.79/fungible/man/seBetaFixed.Rd | 61 +- fungible-1.79/fungible/man/skew.Rd | 32 - fungible-1.79/fungible/man/smoothAPA.Rd | 51 +- fungible-1.79/fungible/man/smoothBY.Rd | 88 ++-- fungible-1.79/fungible/man/smoothKB.Rd | 37 + fungible-1.79/fungible/man/smoothLG.Rd | 72 ++- fungible-1.79/fungible/man/summary.monte.Rd | 63 +-- fungible-1.79/fungible/man/summary.monte1.Rd | 21 - fungible-1.79/fungible/man/svdNorm.Rd | 25 - fungible-1.79/fungible/man/tetcor.Rd | 63 ++- fungible-1.79/fungible/man/tetcorQuasi.Rd | 38 + fungible-1.79/fungible/man/vcos.Rd | 21 - fungible-1.79/fungible/man/vnorm.Rd | 19 148 files changed, 7446 insertions(+), 2499 deletions(-)
Title: Classification and Regression Trees
Description: Classification and regression trees.
Author: Brian Ripley [aut, cre]
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>
Diff between tree versions 1.0-39 dated 2018-03-17 and 1.0-40 dated 2019-03-01
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- tests/Examples/tree-Ex.Rout.save | 14 ++++++++------ 3 files changed, 15 insertions(+), 13 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-23 0.3.2
2018-06-12 0.3.1
2018-05-03 0.3.0
2018-03-14 0.2.2
2018-01-08 0.2.1
2017-12-03 0.2.0
2017-10-05 0.1.8
2017-09-16 0.1.7
2017-08-30 0.1.6
2017-07-27 0.1.5
2017-06-06 0.1.4
2017-05-01 0.1.3
2017-04-29 0.1.2
2017-03-12 0.1.1
2017-03-01 0.1.0
Title: Interface to 'TensorFlow IO'
Description: Interface to 'TensorFlow IO', Datasets and filesystem extensions maintained by `TensorFlow SIG-IO` <https://github.com/tensorflow/community/blob/master/sigs/io/CHARTER.md>.
Author: TensorFlow IO Contributors [aut, cph] (Full list of contributors can be
found at <https://github.com/tensorflow/io/graphs/contributors>),
Yuan Tang [aut, cre] (<https://orcid.org/0000-0001-5243-233X>),
TensorFlow Authors [cph],
Ant Financial [cph],
RStudio [cph]
Maintainer: Yuan Tang <terrytangyuan@gmail.com>
Diff between tfio versions 0.2.0 dated 2019-02-05 and 0.4.0 dated 2019-03-01
DESCRIPTION | 8 +++---- MD5 | 32 +++++++++++++++++++----------- NAMESPACE | 5 ++++ NEWS.md | 33 +++++++++++++++++++++++++++++++ R/arrow_dataset.R | 24 +++++++++++++++------- R/dataset_utils.R | 8 ++++--- R/ignite_dataset.R | 2 - R/image_dataset.R | 26 ++++++++++++++++++++++++ R/lmdb_dataset.R |only R/mnist_dataset.R |only R/pubsub_dataset.R |only man/from_schema.arrow_feather_dataset.Rd | 14 +++++++------ man/from_schema.arrow_stream_dataset.Rd | 14 +++++++------ man/ignite_dataset.Rd | 2 - man/lmdb_dataset.Rd |only man/mnist_image_dataset.Rd |only man/mnist_label_dataset.Rd |only man/pubsub_dataset.Rd |only man/tiff_dataset.Rd |only tests/testthat/test-datasets-ops.R | 18 +++++++++++++++- tests/testthat/testdata/data.mdb |only tests/testthat/testdata/small.tiff |only 22 files changed, 145 insertions(+), 41 deletions(-)
Title: A Package for Statistical Analysis in Epidemiology
Description: Functions for demographic and epidemiological analysis in
the Lexis diagram, i.e. register and cohort follow-up data, in
particular representation, manipulation and simulation of multistate
data - the Lexis suite of functions, which includes interfaces to
'mstate', 'etm' and 'cmprsk' packages.
Also contains functions for Age-Period-Cohort and Lee-Carter
modeling and a function for interval censored data and some useful
functions for tabulation and plotting, as well as a number of
epidemiological data sets.
Author: Bendix Carstensen [aut, cre],
Martyn Plummer [aut],
Esa Laara [ctb],
Michael Hills [ctb]
Maintainer: Bendix Carstensen <b@bxc.dk>
Diff between Epi versions 2.34 dated 2019-02-10 and 2.35 dated 2019-03-01
Epi-2.34/Epi/inst/doc/etm.R |only Epi-2.34/Epi/inst/doc/etm.pdf |only Epi-2.34/Epi/vignettes/flup-nic-box.pdf |only Epi-2.34/Epi/vignettes/flup-nicL1.pdf |only Epi-2.34/Epi/vignettes/flup-nicL2.pdf |only Epi-2.34/Epi/vignettes/flup-pr-at-af.pdf |only Epi-2.34/Epi/vignettes/flup-pr-at.pdf |only Epi-2.34/Epi/vignettes/int-test.Rda |only Epi-2.34/Epi/vignettes/pr.Rda |only Epi-2.35/Epi/CHANGES | 23 Epi-2.35/Epi/DESCRIPTION | 8 Epi-2.35/Epi/MD5 | 126 - Epi-2.35/Epi/NAMESPACE | 2 Epi-2.35/Epi/R/ci.lin.R | 8 Epi-2.35/Epi/R/cutLexis.R | 11 Epi-2.35/Epi/R/lexis.R | 13 Epi-2.35/Epi/R/mod.Lexis.R | 9 Epi-2.35/Epi/R/simLexis.R | 7 Epi-2.35/Epi/R/summary.Lexis.r | 5 Epi-2.35/Epi/inst/doc/flup.R | 590 ++++-- Epi-2.35/Epi/inst/doc/flup.pdf |binary Epi-2.35/Epi/inst/doc/index.html | 17 Epi-2.35/Epi/inst/doc/simLexis.R | 145 - Epi-2.35/Epi/inst/doc/simLexis.pdf |binary Epi-2.35/Epi/inst/doc/yll.pdf |binary Epi-2.35/Epi/man/Epi.Rd |only Epi-2.35/Epi/man/ci.lin.Rd | 9 Epi-2.35/Epi/man/cutLexis.Rd | 5 Epi-2.35/Epi/man/effx.Rd | 3 Epi-2.35/Epi/man/mod.Lexis.Rd | 23 Epi-2.35/Epi/man/start.Lexis.Rd | 29 Epi-2.35/Epi/man/time.scales.Rd | 26 Epi-2.35/Epi/vignettes/auto |only Epi-2.35/Epi/vignettes/fixall | 2 Epi-2.35/Epi/vignettes/flup-Ieff.pdf |only Epi-2.35/Epi/vignettes/flup-IeffR.pdf |only Epi-2.35/Epi/vignettes/flup-RR-int.pdf |only Epi-2.35/Epi/vignettes/flup-box1.pdf |only Epi-2.35/Epi/vignettes/flup-box4.pdf |only Epi-2.35/Epi/vignettes/flup-dmL1.pdf |only Epi-2.35/Epi/vignettes/flup-dmL2.pdf |only Epi-2.35/Epi/vignettes/flup-dur-int-RR.pdf |only Epi-2.35/Epi/vignettes/flup-dur-int.pdf |only Epi-2.35/Epi/vignettes/flup-ins-time.pdf |only Epi-2.35/Epi/vignettes/flup-mbox.pdf |only Epi-2.35/Epi/vignettes/flup-mboxr.pdf |only Epi-2.35/Epi/vignettes/flup-pr-a.pdf |binary Epi-2.35/Epi/vignettes/flup-sep-HR.pdf |only Epi-2.35/Epi/vignettes/flup-sep-mort.pdf |only Epi-2.35/Epi/vignettes/flup-splint.pdf |only Epi-2.35/Epi/vignettes/flup.R | 590 ++++-- Epi-2.35/Epi/vignettes/flup.pdf |binary Epi-2.35/Epi/vignettes/flup.rnw | 1696 ++++++++++++----- Epi-2.35/Epi/vignettes/flup.rwl | 96 - Epi-2.35/Epi/vignettes/flup.tex | 2568 +++++++++++++++++---------- Epi-2.35/Epi/vignettes/sL.pdf |binary Epi-2.35/Epi/vignettes/sL.tex |only Epi-2.35/Epi/vignettes/simLexis-boxes.pdf |binary Epi-2.35/Epi/vignettes/simLexis-comp-0.pdf |binary Epi-2.35/Epi/vignettes/simLexis-mort-int.pdf |binary Epi-2.35/Epi/vignettes/simLexis-pstate0.pdf |binary Epi-2.35/Epi/vignettes/simLexis-pstatex.pdf |binary Epi-2.35/Epi/vignettes/simLexis-pstatey.pdf |binary Epi-2.35/Epi/vignettes/simLexis.R | 145 - Epi-2.35/Epi/vignettes/simLexis.pdf |binary Epi-2.35/Epi/vignettes/simLexis.rnw | 221 +- Epi-2.35/Epi/vignettes/simLexis.rwl | 87 Epi-2.35/Epi/vignettes/simLexis.tex | 1036 ++++------ Epi-2.35/Epi/vignettes/useful.tex | 141 - Epi-2.35/Epi/vignettes/yl.pdf |binary Epi-2.35/Epi/vignettes/yl.tex |only Epi-2.35/Epi/vignettes/yll-imm.pdf |binary Epi-2.35/Epi/vignettes/yll-states.pdf |binary Epi-2.35/Epi/vignettes/yll-sus.pdf |binary Epi-2.35/Epi/vignettes/yll-tot.pdf |binary Epi-2.35/Epi/vignettes/yll.pdf |binary Epi-2.35/Epi/vignettes/yll.rwl | 12 Epi-2.35/Epi/vignettes/yll.tex | 532 ++--- 78 files changed, 4921 insertions(+), 3264 deletions(-)
Title: Concurrent Generation of Binary, Ordinal and Continuous Data
Description: Generation of samples from a mix of binary, ordinal and continuous random variables with a pre-specified correlation matrix and marginal distributions. The details of the method are explained in Demirtas et al. (2012) <DOI:10.1002/sim.5362>.
Author: Hakan Demirtas, Yue Wang, Rawan Allozi, Ran Gao
Maintainer: Ran Gao <rgao8@uic.edu>
Diff between BinOrdNonNor versions 1.4 dated 2018-01-10 and 1.5 dated 2019-03-01
BinOrdNonNor-1.4/BinOrdNonNor/R/Limit_forNN.R |only BinOrdNonNor-1.4/BinOrdNonNor/R/Limit_forONN.R |only BinOrdNonNor-1.4/BinOrdNonNor/man/Limit_forNN.Rd |only BinOrdNonNor-1.4/BinOrdNonNor/man/Limit_forONN.Rd |only BinOrdNonNor-1.5/BinOrdNonNor/DESCRIPTION | 14 +- BinOrdNonNor-1.5/BinOrdNonNor/MD5 | 18 +- BinOrdNonNor-1.5/BinOrdNonNor/R/LimitforNN.R |only BinOrdNonNor-1.5/BinOrdNonNor/R/LimitforONN.R |only BinOrdNonNor-1.5/BinOrdNonNor/R/valid.limits.BinOrdNN.R | 56 ++++---- BinOrdNonNor-1.5/BinOrdNonNor/man/BinOrdNonNor-package.Rd | 10 - BinOrdNonNor-1.5/BinOrdNonNor/man/LimitforNN.Rd |only BinOrdNonNor-1.5/BinOrdNonNor/man/LimitforONN.Rd |only BinOrdNonNor-1.5/BinOrdNonNor/man/valid.limits.BinOrdNN.Rd | 44 +++--- BinOrdNonNor-1.5/BinOrdNonNor/man/validate.target.cormat.BinOrdNN.Rd | 66 +++++----- 14 files changed, 104 insertions(+), 104 deletions(-)
Title: Land Use Change Modelling in R
Description: Classes and methods for spatially explicit land use change
modelling in R.
Author: Simon Moulds <sim.moulds@gmail.com>
Maintainer: Simon Moulds <sim.moulds@gmail.com>
Diff between lulcc versions 1.0.3 dated 2019-01-24 and 1.0.4 dated 2019-03-01
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/models.R | 16 ++++++++++------ 3 files changed, 15 insertions(+), 11 deletions(-)
Title: Toolkit for Encryption, Signatures and Certificates Based on
OpenSSL
Description: Bindings to OpenSSL libssl and libcrypto, plus custom SSH pubkey parsers.
Supports RSA, DSA and EC curves P-256, P-384 and P-521. Cryptographic signatures
can either be created and verified manually or via x509 certificates. AES can be
used in cbc, ctr or gcm mode for symmetric encryption; RSA for asymmetric (public
key) encryption or EC for Diffie Hellman. High-level envelope functions combine
RSA and AES for encrypting arbitrary sized data. Other utilities include key
generators, hash functions (md5, sha1, sha256, etc), base64 encoder, a secure
random number generator, and 'bignum' math methods for manually performing
crypto calculations on large multibyte integers.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>),
Oliver Keyes [ctb]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between openssl versions 1.2.1 dated 2019-01-17 and 1.2.2 dated 2019-03-01
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS | 6 ++++++ inst/doc/bignum.html | 28 ++++++++++++++-------------- inst/doc/crypto_hashing.html | 4 ++-- inst/doc/keys.html | 42 +++++++++++++++++++++--------------------- inst/doc/secure_rng.html | 18 +++++++++--------- src/base64.c | 1 - 8 files changed, 62 insertions(+), 57 deletions(-)
Title: Interface to the 'MODIS Land Products Subsets' Web Services
Description: Programmatic interface to the 'MODIS Land Products Subsets'
web services (<https://modis.ornl.gov/data/modis_webservice.html>).
Allows for easy downloads of 'MODIS' time series directly to your R
workspace or your computer.
Author: Hufkens Koen [aut, cre] (<https://orcid.org/0000-0002-5070-8109>)
Maintainer: Hufkens Koen <koen.hufkens@gmail.com>
Diff between MODISTools versions 1.0.0 dated 2018-06-14 and 1.1.0 dated 2019-03-01
MODISTools-1.0.0/MODISTools/R/mt_read.R |only MODISTools-1.0.0/MODISTools/R/mt_write.R |only MODISTools-1.0.0/MODISTools/man/mt_read.Rd |only MODISTools-1.0.0/MODISTools/man/mt_write.Rd |only MODISTools-1.0.0/MODISTools/tests/run_tests.r |only MODISTools-1.0.0/MODISTools/tests/testthat/test_ancillary_functions.r |only MODISTools-1.0.0/MODISTools/tests/testthat/test_main_functions.r |only MODISTools-1.1.0/MODISTools/DESCRIPTION | 10 MODISTools-1.1.0/MODISTools/MD5 | 53 MODISTools-1.1.0/MODISTools/NAMESPACE | 5 MODISTools-1.1.0/MODISTools/R/coordinate_conversion.R |only MODISTools-1.1.0/MODISTools/R/mt_bands.R | 18 MODISTools-1.1.0/MODISTools/R/mt_batch_subset.R | 122 - MODISTools-1.1.0/MODISTools/R/mt_dates.R | 59 MODISTools-1.1.0/MODISTools/R/mt_products.R | 27 MODISTools-1.1.0/MODISTools/R/mt_sites.R | 15 MODISTools-1.1.0/MODISTools/R/mt_subset.R | 208 +- MODISTools-1.1.0/MODISTools/R/zzz.R |only MODISTools-1.1.0/MODISTools/build/vignette.rds |binary MODISTools-1.1.0/MODISTools/inst/doc/modistools-vignette.R | 82 - MODISTools-1.1.0/MODISTools/inst/doc/modistools-vignette.Rmd | 108 - MODISTools-1.1.0/MODISTools/inst/doc/modistools-vignette.html | 761 +++------- MODISTools-1.1.0/MODISTools/man/mt_bands.Rd | 9 MODISTools-1.1.0/MODISTools/man/mt_batch_subset.Rd | 31 MODISTools-1.1.0/MODISTools/man/mt_bbox.Rd |only MODISTools-1.1.0/MODISTools/man/mt_dates.Rd | 8 MODISTools-1.1.0/MODISTools/man/mt_products.Rd | 7 MODISTools-1.1.0/MODISTools/man/mt_sites.Rd | 5 MODISTools-1.1.0/MODISTools/man/mt_subset.Rd | 26 MODISTools-1.1.0/MODISTools/man/sin_to_ll.Rd |only MODISTools-1.1.0/MODISTools/tests/testthat.R |only MODISTools-1.1.0/MODISTools/tests/testthat/test_coordinate_conversions.R |only MODISTools-1.1.0/MODISTools/tests/testthat/test_download_functions.R |only MODISTools-1.1.0/MODISTools/tests/testthat/test_server_errors.R |only MODISTools-1.1.0/MODISTools/vignettes/modistools-vignette.Rmd | 108 - 35 files changed, 830 insertions(+), 832 deletions(-)
Title: Balanced and Spatially Balanced Sampling
Description: Select balanced and spatially balanced probability samples in multi-dimensional spaces with any prescribed inclusion probabilities. It contains fast (C++ via Rcpp) implementations of the included sampling methods. The local pivotal method and spatially correlated Poisson sampling (for spatially balanced sampling) are included. Also the cube method (for balanced sampling) and the local cube method (for doubly balanced sampling) are included.
Author: Anton Grafström, Jonathan Lisic
Maintainer: Anton Grafström <anton.grafstrom@gmail.com>
Diff between BalancedSampling versions 1.5.4 dated 2018-09-10 and 1.5.5 dated 2019-03-01
DESCRIPTION | 8 - MD5 | 9 +- R/RcppExports.R | 4 man/scps_coord.Rd |only src/RcppExports.cpp | 14 +++ src/scps.cpp | 230 ++++++++++++++++++++++++++++++++++------------------ 6 files changed, 180 insertions(+), 85 deletions(-)
More information about BalancedSampling at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-25 1.2.1
2013-02-25 1.2
2013-02-04 1.1
2013-01-14 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-28 1.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-07-01 1.0.1
2017-06-29 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-22 1.5
2015-03-19 1.4
2012-12-27 1.1
2010-07-02 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-05-23 1.1
2013-10-15 1.0
Title: R Interface to 'FishBase'
Description: A programmatic interface to <http://www.fishbase.org>, re-written
based on an accompanying 'RESTful' API. Access tables describing over 30,000
species of fish, their biology, ecology, morphology, and more. This package also
supports experimental access to <http://www.sealifebase.org> data, which contains
nearly 200,000 species records for all types of aquatic life not covered by
'FishBase.'
Author: Carl Boettiger [cre, aut] (<https://orcid.org/0000-0002-1642-628X>),
Scott Chamberlain [aut] (<https://orcid.org/0000-0003-1444-9135>),
Duncan Temple Lang [aut],
Peter Wainwright [aut]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between rfishbase versions 3.0.0 dated 2018-11-09 and 3.0.0.1 dated 2019-03-01
DESCRIPTION | 7 ++++--- MD5 | 2 +- 2 files changed, 5 insertions(+), 4 deletions(-)
Title: MCMC, Particle Filtering, and Programmable Hierarchical Modeling
Description: A system for writing hierarchical statistical models largely compatible with 'BUGS' and 'JAGS', writing nimbleFunctions to operate models and do basic R-style math, and compiling both models and nimbleFunctions via custom-generated C++. 'NIMBLE' includes default methods for MCMC, particle filtering, Monte Carlo Expectation Maximization, and some other tools. The nimbleFunction system makes it easy to do things like implement new MCMC samplers from R, customize the assignment of samplers to different parts of a model from R, and compile the new samplers automatically via C++ alongside the samplers 'NIMBLE' provides. 'NIMBLE' extends the 'BUGS'/'JAGS' language by making it extensible: New distributions and functions can be added, including as calls to external compiled code. Although most people think of MCMC as the main goal of the 'BUGS'/'JAGS' language for writing models, one can use 'NIMBLE' for writing arbitrary other kinds of model-generic algorithms as well. A full User Manual is available at <https://r-nimble.org>.
Author: Perry de Valpine, Christopher Paciorek, Daniel Turek, Cliff Anderson-Bergman, Nick Michaud, Fritz Obermeyer, Claudia Wehrhahn Cortes, Abel Rodriguez, Duncan Temple Lang, and see AUTHORS file for additional contributors.
Maintainer: Christopher Paciorek <paciorek@stat.berkeley.edu>
Diff between nimble versions 0.7.0 dated 2019-02-01 and 0.7.0.1 dated 2019-03-01
DESCRIPTION | 7 ++++--- MD5 | 2 +- 2 files changed, 5 insertions(+), 4 deletions(-)
Title: Goodness-of-Fit Tests for the Exponential and Two-Parameter
Weibull Distributions
Description: Contains a large number of the goodness-of-fit tests for the Exponential and Weibull distributions classified into families: the tests based on the empirical distribution function, the tests based on the probability plot, the tests based on the normalized spacings, the tests based on the Laplace transform and the likelihood based tests.
Author: Meryam Krit
Maintainer: Meryam Krit <meryam.krit@gmail.com>
Diff between EWGoF versions 2.2.1 dated 2017-10-05 and 2.2.2 dated 2019-03-01
DESCRIPTION | 6 +++--- MD5 | 7 ++++--- README.md |only src/GoFsim.cpp | 3 +++ src/GoFsim2d.cpp | 2 ++ 5 files changed, 12 insertions(+), 6 deletions(-)
Title: Emissions and Statistics in R for Wastewater and Pollutants in
Combined Sewer Systems
Description: Provides a fast and parallelised calculator to estimate combined wastewater emissions.
It supports the planning and design of urban drainage systems, without the requirement of
extensive simulation tools. The 'EmiStatR' package implements modular R methods. This enables
to add new functionalities through the R framework. Furthermore, 'EmiStatR' was implemented
with an interactive user interface with sliders and input data exploration.
Author: J.A. Torres-Matallana [aut, cre]
K. Klepiszewski [aut, cre]
U. Leopold [ctb]
G. Schutz [ctb]
G.B.M. Heuvelink [ctb]
Maintainer: J.A. Torres-Matallana <arturo.torres@list.lu>
Diff between EmiStatR versions 1.2.1.1 dated 2018-07-04 and 1.2.1.2 dated 2019-03-01
DESCRIPTION | 7 ++++--- MD5 | 2 +- 2 files changed, 5 insertions(+), 4 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-14 0.1.2
2017-11-22 0.1.1
2017-11-14 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-25 1.2.0
2018-11-13 1.0.1
2018-11-03 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-07 0.1.4
2017-07-08 0.1.3
2016-06-24 0.1.2
2016-03-31 0.1.1
2016-03-03 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-23 0.1.7
2017-07-03 0.1.6
2017-06-28 0.1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-14 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-09-29 1.0.4
2018-05-22 1.0.3
2018-03-11 1.0.2
2018-02-11 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-17 0.3.0
2018-02-22 0.2.0
2018-01-15 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-16 0.0.2
2018-07-28 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-15 0.1.2
2016-04-12 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-02 2.0.4
2018-05-07 2.0.3
2018-02-08 2.0.0
2017-06-14 1.2.0
2016-03-06 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-07 0.2.5
2017-09-22 0.2.4
2017-09-14 0.2.3
2017-09-01 0.2.2
2017-07-08 0.1.2
2017-03-29 0.1.1
2017-03-20 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-11 0.2.1
2016-07-03 0.2.0
2015-10-16 0.1.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-02 1.1.2
2019-01-13 1.1.1
2018-03-26 1.1.0
2014-10-25 1.0.3
2014-10-14 1.0.2
2014-07-08 1.0
Title: 'Pubmed' Word Clouds
Description: Create a word cloud using the abstract of publications from 'Pubmed'.
Author: Felix Yanhui Fan <nolanfyh@gmail.com>
Maintainer: Felix Yanhui Fan <nolanfyh@gmail.com>
Diff between PubMedWordcloud versions 0.3.5 dated 2017-10-12 and 0.3.6 dated 2019-03-01
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/getPMIDsByKeyWords.R | 2 ++ 3 files changed, 8 insertions(+), 6 deletions(-)
More information about PubMedWordcloud at CRAN
Permanent link
Title: Easy Linguistics Document Writing with R Markdown
Description: Provides 'Shiny gadgets' to search, type, and insert IPA symbols
into documents or scripts, requiring only knowledge about phonetics or
'X-SAMPA'. Also provides functions to facilitate the rendering of IPA
symbols in 'LaTeX' and PDF format, making IPA symbols properly rendered
in all output formats. A minimal R Markdown template for authoring
Linguistics related documents is also bundled with the package. Some
helper functions to facilitate authoring with R Markdown is also provided.
Author: Yongfu Liao [aut, cre, cph] (<https://orcid.org/0000-0002-1814-2993>)
Maintainer: Yongfu Liao <liao961120@gmail.com>
Diff between linguisticsdown versions 1.1.0 dated 2018-11-09 and 1.2.0 dated 2019-03-01
DESCRIPTION | 15 ++++++++------- MD5 | 11 +++++++---- NAMESPACE | 5 +++++ NEWS.md | 5 +++++ R/include_graphics2.R |only README.md | 29 ++++++++++++++++++++++++----- man/include_graphics2.Rd |only man/include_graphics_latex.Rd |only 8 files changed, 49 insertions(+), 16 deletions(-)
More information about linguisticsdown at CRAN
Permanent link
Title: Functions Supporting Packages ChemoSpec and ChemoSpec2D
Description: Functions supporting the common needs of packages 'ChemoSpec' and 'ChemoSpec2D'.
Author: Bryan A. Hanson [aut, cre] (ORCID 0000-0003-3536-8246)
Maintainer: Bryan A. Hanson <hanson@depauw.edu>
Diff between ChemoSpecUtils versions 0.2.204 dated 2018-12-19 and 0.2.211 dated 2019-03-01
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 7 ++++++- R/chkSpectra.Spectra2D.R | 17 +++++++++-------- R/remGrpSam.R | 2 +- R/rowDist.R | 8 ++------ 6 files changed, 28 insertions(+), 26 deletions(-)
More information about ChemoSpecUtils at CRAN
Permanent link
Title: Exploratory Chemometrics for 2D Spectroscopy
Description: A collection of functions for exploratory chemometrics of 2D spectroscopic data sets such as COSY (correlated spectroscopy) and HSQC (heteronuclear single quantum coherence) 2D NMR (nuclear magnetic resonance) spectra. 'ChemoSpec2D' deploys methods aimed primarily at classification of samples and the identification of spectral features which are important in distinguishing samples from each other. Each 2D spectrum (a matrix) is treated as the unit of observation, and thus the physical sample in the spectrometer corresponds to the sample from a statistical perspective. In addition to chemometric tools, a few tools are provided for plotting 2D spectra, but these are not intended to replace the functionality typically available on the spectrometer. 'ChemoSpec2D' takes many of its cues from 'ChemoSpec' and tries to create consistent graphical output and to be very user friendly.
Author: Bryan A. Hanson [aut, cre] (ORCID 0000-0003-3536-8246)
Maintainer: Bryan A. Hanson <hanson@depauw.edu>
Diff between ChemoSpec2D versions 0.2.0 dated 2018-12-09 and 0.2.19 dated 2019-03-01
DESCRIPTION | 12 +-- MD5 | 28 ++++----- NAMESPACE | 1 NEWS.md | 10 +++ R/inspectLvls.R | 25 +++++--- R/miaLoadings.R | 142 ++++++++++++++++++++++++++-------------------- R/pfacLoadings.R | 117 ++++++++++++++++++++++--------------- R/pfacSpectra2D.R | 36 +++++++---- inst/doc/ChemoSpec2D.Rmd | 2 inst/doc/ChemoSpec2D.pdf |binary man/inspectLvls.Rd | 8 +- man/miaLoadings.Rd | 12 ++- man/pfacLoadings.Rd | 10 ++- man/pfacSpectra2D.Rd | 8 +- vignettes/ChemoSpec2D.Rmd | 2 15 files changed, 251 insertions(+), 162 deletions(-)
Title: Exploratory Chemometrics for Spectroscopy
Description: A collection of functions for top-down exploratory data analysis
of spectral data including nuclear magnetic resonance (NMR), infrared (IR),
Raman, X-ray fluorescence (XRF) and other similar types of spectroscopy.
Includes functions for plotting and inspecting spectra, peak alignment,
hierarchical cluster analysis (HCA), principal components analysis (PCA) and
model-based clustering. Robust methods appropriate for this type of
high-dimensional data are available. ChemoSpec is designed for structured
experiments, such as metabolomics investigations, where the samples fall into
treatment and control groups. Graphical output is formatted consistently for
publication quality plots. ChemoSpec is intended to be very user friendly and
to help you get usable results quickly. A vignette covering typical operations
is available.
Author: Bryan A. Hanson [aut, cre] (ORCID 0000-0003-3536-8246),
Mike Bostock [cph, ctb] (author of the d3.js library used by
plotSpectraJS, http://d3js.org),
Matt Keinsley [ctb] (author of initial AOV-PCA code)
Maintainer: Bryan A. Hanson <hanson@depauw.edu>
Diff between ChemoSpec versions 5.0.225 dated 2018-12-19 and 5.0.229 dated 2019-03-01
DESCRIPTION | 13 ++++++------- MD5 | 14 +++++++------- NEWS.md | 2 +- R/LoopThruSpectra.R | 2 +- inst/doc/ChemoSpec.R | 2 +- inst/doc/ChemoSpec.Rmd | 4 ++-- inst/doc/ChemoSpec.pdf |binary vignettes/ChemoSpec.Rmd | 4 ++-- 8 files changed, 20 insertions(+), 21 deletions(-)