Title: Tools to Handle Taxonomic Lists
Description: Some tools to work with taxonomic name lists.
Author: Vijay Barve [aut, cre] (<https://orcid.org/0000-0002-4852-2567>)
Maintainer: Vijay Barve <vijay.barve@gmail.com>
Diff between taxotools versions 0.0.9 dated 2019-02-26 and 0.0.11 dated 2019-03-05
DESCRIPTION | 8 ++++---- MD5 | 10 ++++++---- NAMESPACE | 1 + NEWS | 2 +- R/MakeCanonical.R | 2 +- R/MatchLists.R |only man/MatchLists.Rd |only 7 files changed, 13 insertions(+), 10 deletions(-)
Title: Numerical Estimation of Sparse Hessians
Description: Estimates Hessian of a scalar-valued function, and returns it
in a sparse Matrix format. The sparsity pattern must be known in advance. The
algorithm is especially efficient for hierarchical models with a large number of
heterogeneous units. See Braun, M. (2017) <doi:10.18637/jss.v082.i10>.
Author: Michael Braun [aut, cre, cph]
Maintainer: Michael Braun <braunm@smu.edu>
Diff between sparseHessianFD versions 0.3.3.3 dated 2018-03-27 and 0.3.3.4 dated 2019-03-05
DESCRIPTION | 11 ++++++----- MD5 | 20 ++++++++++---------- NEWS | 4 ++++ NEWS.md | 5 +++++ build/vignette.rds |binary inst/doc/replication.R | 2 +- inst/doc/sparseHessianFD.pdf |binary man/Coord.to.Pointers.Rd | 3 ++- man/Matrix.to.Pointers.Rd | 4 ++-- man/deprecated.Rd | 2 -- vignettes/replication.R | 2 +- 11 files changed, 31 insertions(+), 22 deletions(-)
More information about sparseHessianFD at CRAN
Permanent link
Title: Financial and Actuarial Mathematics for Life Contingencies
Description: Classes and methods that allow the user to manage life table,
actuarial tables (also multiple decrements tables). Moreover, functions to easily
perform demographic, financial and actuarial mathematics on life contingencies
insurances calculations are contained therein.
Author: Giorgio Alfredo Spedicato [aut, cre]
(<https://orcid.org/0000-0002-0315-8888>),
Christophe Dutang [ctb] (<https://orcid.org/0000-0001-6732-1501>),
Reinhold Kainhofer [ctb] (<https://orcid.org/0000-0002-7895-1311>),
Kevin J Owens [ctb],
Ernesto Schirmacher [ctb],
Gian Paolo Clemente [ctb] (<https://orcid.org/0000-0001-6795-4595>),
Ivan Williams [ctb]
Maintainer: Giorgio Alfredo Spedicato <spedicato_giorgio@yahoo.it>
Diff between lifecontingencies versions 1.3.5 dated 2018-09-18 and 1.3.6 dated 2019-03-05
lifecontingencies-1.3.5/lifecontingencies/man/Lxt.Rd |only lifecontingencies-1.3.5/lifecontingencies/man/Tx.Rd |only lifecontingencies-1.3.6/lifecontingencies/ChangeLog | 3 lifecontingencies-1.3.6/lifecontingencies/DESCRIPTION | 30 lifecontingencies-1.3.6/lifecontingencies/MD5 | 79 - lifecontingencies-1.3.6/lifecontingencies/NAMESPACE | 2 lifecontingencies-1.3.6/lifecontingencies/NEWS | 7 lifecontingencies-1.3.6/lifecontingencies/R/3_demographicFunctions.R | 46 lifecontingencies-1.3.6/lifecontingencies/R/5_actuarialFunctions.R | 2 lifecontingencies-1.3.6/lifecontingencies/build/vignette.rds |binary lifecontingencies-1.3.6/lifecontingencies/data/AF92Lt.rda |binary lifecontingencies-1.3.6/lifecontingencies/data/AM92Lt.rda |binary lifecontingencies-1.3.6/lifecontingencies/data/SoAISTdata.rda |binary lifecontingencies-1.3.6/lifecontingencies/data/de_angelis_di_falco.rda |binary lifecontingencies-1.3.6/lifecontingencies/data/demoCanada.rda |binary lifecontingencies-1.3.6/lifecontingencies/data/demoChina.rda |binary lifecontingencies-1.3.6/lifecontingencies/data/demoFrance.rda |binary lifecontingencies-1.3.6/lifecontingencies/data/demoGermany.rda |binary lifecontingencies-1.3.6/lifecontingencies/data/demoIta.rda |binary lifecontingencies-1.3.6/lifecontingencies/data/demoIta_new.rda |binary lifecontingencies-1.3.6/lifecontingencies/data/demoJapan.rda |binary lifecontingencies-1.3.6/lifecontingencies/data/demoUk.rda |binary lifecontingencies-1.3.6/lifecontingencies/data/demoUsa.rda |binary lifecontingencies-1.3.6/lifecontingencies/data/soa08.rda |binary lifecontingencies-1.3.6/lifecontingencies/data/soa08Act.rda |binary lifecontingencies-1.3.6/lifecontingencies/data/soaLt.rda |binary lifecontingencies-1.3.6/lifecontingencies/inst/doc/PensionPlanVal.R |only lifecontingencies-1.3.6/lifecontingencies/inst/doc/PensionPlanVal.Rmd |only lifecontingencies-1.3.6/lifecontingencies/inst/doc/PensionPlanVal.html |only lifecontingencies-1.3.6/lifecontingencies/inst/doc/an_introduction_to_lifecontingencies_package.pdf |binary lifecontingencies-1.3.6/lifecontingencies/inst/doc/compute-detail.pdf |binary lifecontingencies-1.3.6/lifecontingencies/inst/doc/introToLifecontingencies.pdf |binary lifecontingencies-1.3.6/lifecontingencies/inst/doc/mortality_projection.R | 186 ++ lifecontingencies-1.3.6/lifecontingencies/inst/doc/mortality_projection.Rnw | 224 ++ lifecontingencies-1.3.6/lifecontingencies/inst/doc/mortality_projection.pdf |binary lifecontingencies-1.3.6/lifecontingencies/inst/doc/pensionfunding.html | 786 ++++++---- lifecontingencies-1.3.6/lifecontingencies/man/mxt.Rd | 59 lifecontingencies-1.3.6/lifecontingencies/man/other-demographic-functions.Rd |only lifecontingencies-1.3.6/lifecontingencies/man/pureendowment.Rd | 2 lifecontingencies-1.3.6/lifecontingencies/vignettes/PensionPlanVal.Rmd |only lifecontingencies-1.3.6/lifecontingencies/vignettes/StMoMoModels.RData |only lifecontingencies-1.3.6/lifecontingencies/vignettes/lifecontingenciesBiblio.bib | 51 lifecontingencies-1.3.6/lifecontingencies/vignettes/mortalityDatasets.RData |binary lifecontingencies-1.3.6/lifecontingencies/vignettes/mortality_projection-stmomo_rhplot.pdf |only lifecontingencies-1.3.6/lifecontingencies/vignettes/mortality_projection.Rnw | 224 ++ 45 files changed, 1312 insertions(+), 389 deletions(-)
More information about lifecontingencies at CRAN
Permanent link
Title: Identify and Correct Invalid HGNC Human Gene Symbols and MGI
Mouse Gene Symbols
Description: Contains functions for
identifying and correcting HGNC human gene symbols and MGI mouse gene symbols
which have been converted to date format by Excel, withdrawn, or aliased.
Also contains functions for reversibly converting between HGNC
symbols and valid R names.
Author: Levi Waldron and Markus Riester
Maintainer: Levi Waldron <lwaldron.research@gmail.com>
Diff between HGNChelper versions 0.5.2 dated 2018-07-06 and 0.7.1 dated 2019-03-05
DESCRIPTION | 15 ++++++++------- MD5 | 33 ++++++++++++++++++++------------- NEWS | 7 +++++++ R/checkGeneSymbols.R | 4 +--- R/data.R | 2 +- R/getCurrentMaps.R | 24 +++++++++++++++--------- README.md | 26 +++++++++++++++++++++----- build/HGNChelper.pdf |binary build/vignette.rds |only data/hgnc.table.rda |binary data/mouse.table.rda |binary inst/doc |only man/checkGeneSymbols.Rd | 3 ++- man/findExcelGeneSymbols.Rd | 5 +++-- man/hgnc.table.Rd | 4 ++-- man/mouse.table.Rd | 2 +- vignettes |only 17 files changed, 81 insertions(+), 44 deletions(-)
Title: Estimating Weight-Function Models for Publication Bias
Description: Estimates the Vevea and Hedges (1995)
weight-function model. By specifying arguments, users can
also estimate the modified model described in Vevea and Woods (2005),
which may be more practical with small datasets. Users
can also specify moderators to estimate a linear model.
The package functionality allows users to easily extract the
results of these analyses as R objects for other uses. In addition,
the package includes a function to launch both models as
a Shiny application. Although the Shiny application is also available online,
this function allows users to launch it locally if they choose.
Author: Kathleen M. Coburn [aut, cre],
Jack L. Vevea [aut]
Maintainer: Kathleen M. Coburn <kcoburn@ucmerced.edu>
Diff between weightr versions 2.0.0 dated 2019-02-28 and 2.0.1 dated 2019-03-05
weightr-2.0.0/weightr/man/predict.Rd |only weightr-2.0.0/weightr/man/print.Rd |only weightr-2.0.1/weightr/DESCRIPTION | 6 +-- weightr-2.0.1/weightr/MD5 | 14 ++++---- weightr-2.0.1/weightr/NAMESPACE | 4 +- weightr-2.0.1/weightr/NEWS.md | 7 ++++ weightr-2.0.1/weightr/R/predict.weightfunct.R | 36 +++++++++++------------ weightr-2.0.1/weightr/R/print.weightfunct.R | 2 - weightr-2.0.1/weightr/man/predict.weightfunct.Rd |only weightr-2.0.1/weightr/man/print.weightfunct.Rd |only 10 files changed, 38 insertions(+), 31 deletions(-)
Title: Tidy RSS for R
Description: With the objective of including data from RSS feeds into your analysis, 'tidyRSS' parses RSS, Atom XML, JSON and geoRSS feeds and returns a tidy data frame.
Author: Robert Myles McDonnell
Maintainer: Robert Myles McDonnell <robertmylesmcdonnell@gmail.com>
Diff between tidyRSS versions 1.2.7 dated 2018-11-03 and 1.2.8 dated 2019-03-05
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 5 +++++ R/atom_parse.R | 7 ++++--- R/tidyfeed.R | 5 +++-- build/vignette.rds |binary inst/doc/tidyrss.html | 28 +++++++++++++++++++++++++--- man/tidyfeed.Rd | 7 ++++++- 8 files changed, 54 insertions(+), 20 deletions(-)
Title: Mixed Data Sampling Regression
Description: Methods and tools for mixed frequency time series data analysis.
Allows estimation, model selection and forecasting for MIDAS regressions.
Author: Virmantas Kvedaras <virmantas.kvedaras@ec.europa.eu>, Vaidotas Zemlys-Balevičius
<vaidotas.zemlys@mif.vu.lt>
Maintainer: Vaidotas Zemlys-Balevičius <zemlys@gmail.com>
Diff between midasr versions 0.6 dated 2016-08-08 and 0.7 dated 2019-03-05
midasr-0.6/midasr/man/midas_r_simple.Rd |only midasr-0.6/midasr/man/plot_midas_coef.Rd |only midasr-0.7/midasr/DESCRIPTION | 27 - midasr-0.7/midasr/LICENCE | 4 midasr-0.7/midasr/MD5 | 216 +++++++---- midasr-0.7/midasr/NAMESPACE | 59 +++ midasr-0.7/midasr/NEWS | 15 midasr-0.7/midasr/R/deriv.R | 50 +- midasr-0.7/midasr/R/imidasreg.R | 368 ++++++++++---------- midasr-0.7/midasr/R/lagspec.R | 41 ++ midasr-0.7/midasr/R/midas_nlpr.R |only midasr-0.7/midasr/R/midas_nlpr_methods.R |only midasr-0.7/midasr/R/midas_qr_methods.R |only midasr-0.7/midasr/R/midas_r_methods.R | 118 +++++- midasr-0.7/midasr/R/midas_sp.R |only midasr-0.7/midasr/R/midas_sp_methods.R |only midasr-0.7/midasr/R/midaslag.R | 291 ++++++++++----- midasr-0.7/midasr/R/midasqr.R |only midasr-0.7/midasr/R/midasr-package.R | 24 + midasr-0.7/midasr/R/midasreg.R | 162 ++++++-- midasr-0.7/midasr/R/modsel.R | 21 - midasr-0.7/midasr/R/simulate.R | 252 +++++++++++++ midasr-0.7/midasr/README.md | 30 + midasr-0.7/midasr/data/UScpiqs.RData |only midasr-0.7/midasr/data/USeffrw.RData |only midasr-0.7/midasr/demo/00Index | 13 midasr-0.7/midasr/demo/autoreg.R | 56 +-- midasr-0.7/midasr/demo/imidasr.R | 52 +- midasr-0.7/midasr/demo/nlpr.R |only midasr-0.7/midasr/demo/okun.R | 94 ++--- midasr-0.7/midasr/demo/pl.R |only midasr-0.7/midasr/demo/single_index.R |only midasr-0.7/midasr/inst/CITATION | 52 +- midasr-0.7/midasr/man/UScpiqs.Rd |only midasr-0.7/midasr/man/USeffrw.Rd |only midasr-0.7/midasr/man/USpayems.Rd | 1 midasr-0.7/midasr/man/USqgdp.Rd | 1 midasr-0.7/midasr/man/USrealgdp.Rd | 1 midasr-0.7/midasr/man/USunempr.Rd | 1 midasr-0.7/midasr/man/agk.test.Rd | 7 midasr-0.7/midasr/man/almonp.Rd | 1 midasr-0.7/midasr/man/almonp_gradient.Rd | 1 midasr-0.7/midasr/man/amidas_table.Rd | 7 midasr-0.7/midasr/man/amweights.Rd | 1 midasr-0.7/midasr/man/average_forecast.Rd | 1 midasr-0.7/midasr/man/check_mixfreq.Rd | 1 midasr-0.7/midasr/man/coef.midas_nlpr.Rd |only midasr-0.7/midasr/man/coef.midas_r.Rd | 1 midasr-0.7/midasr/man/coef.midas_sp.Rd |only midasr-0.7/midasr/man/deriv_tests.Rd | 7 midasr-0.7/midasr/man/deviance.midas_nlpr.Rd |only midasr-0.7/midasr/man/deviance.midas_r.Rd | 1 midasr-0.7/midasr/man/deviance.midas_sp.Rd |only midasr-0.7/midasr/man/dmls.Rd | 1 midasr-0.7/midasr/man/expand_amidas.Rd | 1 midasr-0.7/midasr/man/expand_weights_lags.Rd | 1 midasr-0.7/midasr/man/extract.midas_r.Rd |only midasr-0.7/midasr/man/fitted.midas_nlpr.Rd |only midasr-0.7/midasr/man/fitted.midas_sp.Rd |only midasr-0.7/midasr/man/fmls.Rd | 7 midasr-0.7/midasr/man/forecast.midas_r.Rd | 10 midasr-0.7/midasr/man/genexp.Rd | 7 midasr-0.7/midasr/man/genexp_gradient.Rd | 9 midasr-0.7/midasr/man/get_estimation_sample.Rd | 1 midasr-0.7/midasr/man/gompertzp.Rd | 5 midasr-0.7/midasr/man/gompertzp_gradient.Rd | 5 midasr-0.7/midasr/man/hAh_test.Rd | 7 midasr-0.7/midasr/man/hAhr_test.Rd | 7 midasr-0.7/midasr/man/harstep.Rd | 7 midasr-0.7/midasr/man/harstep_gradient.Rd | 7 midasr-0.7/midasr/man/hf_lags_table.Rd | 4 midasr-0.7/midasr/man/imidas_r.Rd | 11 midasr-0.7/midasr/man/lcauchyp.Rd | 5 midasr-0.7/midasr/man/lcauchyp_gradient.Rd | 5 midasr-0.7/midasr/man/lf_lags_table.Rd | 4 midasr-0.7/midasr/man/lstr.Rd |only midasr-0.7/midasr/man/lws_table-add.Rd | 1 midasr-0.7/midasr/man/midas_auto_sim.Rd | 5 midasr-0.7/midasr/man/midas_lstr_plain.Rd |only midasr-0.7/midasr/man/midas_lstr_sim.Rd |only midasr-0.7/midasr/man/midas_mmm_plain.Rd |only midasr-0.7/midasr/man/midas_mmm_sim.Rd |only midasr-0.7/midasr/man/midas_nlpr.Rd |only midasr-0.7/midasr/man/midas_nlpr.fit.Rd |only midasr-0.7/midasr/man/midas_pl_plain.Rd |only midasr-0.7/midasr/man/midas_pl_sim.Rd |only midasr-0.7/midasr/man/midas_qr.Rd |only midasr-0.7/midasr/man/midas_r.Rd | 11 midasr-0.7/midasr/man/midas_r.fit.Rd | 1 midasr-0.7/midasr/man/midas_r_ic_table.Rd | 5 midasr-0.7/midasr/man/midas_r_np.Rd | 7 midasr-0.7/midasr/man/midas_r_plain.Rd |only midasr-0.7/midasr/man/midas_si_plain.Rd |only midasr-0.7/midasr/man/midas_si_sim.Rd |only midasr-0.7/midasr/man/midas_sim.Rd | 1 midasr-0.7/midasr/man/midas_sp.Rd |only midasr-0.7/midasr/man/midas_u.Rd | 7 midasr-0.7/midasr/man/midasr-package.Rd | 3 midasr-0.7/midasr/man/mls.Rd | 1 midasr-0.7/midasr/man/mlsd.Rd |only midasr-0.7/midasr/man/mmm.Rd |only midasr-0.7/midasr/man/modsel.Rd | 3 midasr-0.7/midasr/man/nakagamip.Rd | 5 midasr-0.7/midasr/man/nakagamip_gradient.Rd | 5 midasr-0.7/midasr/man/nbeta.Rd | 5 midasr-0.7/midasr/man/nbetaMT.Rd | 5 midasr-0.7/midasr/man/nbetaMT_gradient.Rd | 5 midasr-0.7/midasr/man/nbeta_gradient.Rd | 5 midasr-0.7/midasr/man/nealmon.Rd | 1 midasr-0.7/midasr/man/nealmon_gradient.Rd | 1 midasr-0.7/midasr/man/oos_prec.Rd | 1 midasr-0.7/midasr/man/plot_lstr.Rd |only midasr-0.7/midasr/man/plot_midas_coef.midas_nlpr.Rd |only midasr-0.7/midasr/man/plot_midas_coef.midas_r.Rd |only midasr-0.7/midasr/man/plot_sp.Rd |only midasr-0.7/midasr/man/polystep.Rd | 1 midasr-0.7/midasr/man/polystep_gradient.Rd | 1 midasr-0.7/midasr/man/predict.midas_nlpr.Rd |only midasr-0.7/midasr/man/predict.midas_r.Rd | 1 midasr-0.7/midasr/man/predict.midas_sp.Rd |only midasr-0.7/midasr/man/prep_hAh.Rd | 7 midasr-0.7/midasr/man/rvsp500.Rd | 1 midasr-0.7/midasr/man/select_and_forecast.Rd | 1 midasr-0.7/midasr/man/simulate.midas_r.Rd | 10 midasr-0.7/midasr/man/split_data.Rd | 1 midasr-0.7/midasr/man/update_weights.Rd | 1 midasr-0.7/midasr/man/weights_table.Rd | 4 midasr-0.7/midasr/tests/testthat/test_methods.R | 2 midasr-0.7/midasr/tests/testthat/test_midas_nlpr.R |only midasr-0.7/midasr/tests/testthat/test_midas_sp.R |only midasr-0.7/midasr/tests/testthat/test_midaslag.R | 55 ++ midasr-0.7/midasr/tests/testthat/test_midasr.R | 113 +++++- 132 files changed, 1558 insertions(+), 799 deletions(-)
Title: Linear Mixed-Effects Models using 'Eigen' and S4
Description: Fit linear and generalized linear mixed-effects models.
The models and their components are represented using S4 classes and
methods. The core computational algorithms are implemented using the
'Eigen' C++ library for numerical linear algebra and 'RcppEigen' "glue".
Author: Douglas Bates [aut] (<https://orcid.org/0000-0001-8316-9503>),
Martin Maechler [aut] (<https://orcid.org/0000-0002-8685-9910>),
Ben Bolker [aut, cre] (<https://orcid.org/0000-0002-2127-0443>),
Steven Walker [aut] (<https://orcid.org/0000-0002-4394-9078>),
Rune Haubo Bojesen Christensen [ctb]
(<https://orcid.org/0000-0002-4494-3399>),
Henrik Singmann [ctb] (<https://orcid.org/0000-0002-4842-3657>),
Bin Dai [ctb],
Fabian Scheipl [ctb] (<https://orcid.org/0000-0001-8172-3603>),
Gabor Grothendieck [ctb],
Peter Green [ctb] (<https://orcid.org/0000-0002-0238-9852>),
John Fox [ctb]
Maintainer: Ben Bolker <bbolker+lme4@gmail.com>
Diff between lme4 versions 1.1-20 dated 2019-02-04 and 1.1-21 dated 2019-03-05
lme4-1.1-20/lme4/configure.ac |only lme4-1.1-21/lme4/DESCRIPTION | 36 ++--- lme4-1.1-21/lme4/MD5 | 64 ++++----- lme4-1.1-21/lme4/NAMESPACE | 7 - lme4-1.1-21/lme4/R/bootMer.R | 96 +++++++++++--- lme4-1.1-21/lme4/R/checkConv.R | 2 lme4-1.1-21/lme4/R/error_factory.R |only lme4-1.1-21/lme4/R/methods.R | 2 lme4-1.1-21/lme4/R/profile.R | 13 -- lme4-1.1-21/lme4/R/utilities.R | 6 lme4-1.1-21/lme4/inst/NEWS.Rd | 16 ++ lme4-1.1-21/lme4/man/allFit.Rd | 2 lme4-1.1-21/lme4/man/bootMer.Rd | 26 ---- lme4-1.1-21/lme4/man/confint.merMod.Rd | 2 lme4-1.1-21/lme4/man/convergence.Rd | 148 ++++++++++++++-------- lme4-1.1-21/lme4/man/isSingular.Rd | 25 ++- lme4-1.1-21/lme4/man/lmerControl.Rd | 113 ++++++++--------- lme4-1.1-21/lme4/man/nloptwrap.Rd | 17 ++ lme4-1.1-21/lme4/tests/Rplots.pdf |binary lme4-1.1-21/lme4/tests/glmerWarn.R | 11 - lme4-1.1-21/lme4/tests/hatvalues.R | 6 lme4-1.1-21/lme4/tests/lmList-tst.R | 162 ++----------------------- lme4-1.1-21/lme4/tests/lmer-0.R | 5 lme4-1.1-21/lme4/tests/lmer-1.R | 12 + lme4-1.1-21/lme4/tests/lmer-1.Rout.save | 42 +++--- lme4-1.1-21/lme4/tests/predsim.R | 5 lme4-1.1-21/lme4/tests/priorWeights.R | 6 lme4-1.1-21/lme4/tests/testthat/test-allFit.R | 4 lme4-1.1-21/lme4/tests/testthat/test-glmer.R | 4 lme4-1.1-21/lme4/tests/testthat/test-lmList.R | 23 +++ lme4-1.1-21/lme4/tests/testthat/test-lmer.R | 5 lme4-1.1-21/lme4/tests/testthat/test-methods.R | 23 ++- lme4-1.1-21/lme4/tests/testthat/test-predict.R | 11 + lme4-1.1-21/lme4/tests/testthat/test-utils.R | 5 34 files changed, 470 insertions(+), 429 deletions(-)
Title: Data Analysis of Liquid-Liquid Systems using R
Description: Originally design to characterise Aqueous Two Phase Systems, LLSR provide a simple way to analyse experimental data and obtain phase diagram parameters, among other properties, systematically. The package will include (every other update) new functions in order to comprise useful tools in liquid-liquid extraction research.
Author: Diego F Coelho <diegofcoelho@gmail.com> [aut, cre], Pedro Vitor Oliveira Menezes <pedrod841@hotmail.com> [dtc], Carla Corina dos Santos Porto <carlacorina@hotmail.com.br> [dtc], Jon George Huddleston <Jonathan.Huddleston@brunel.ac.uk> [rev], Elias Basile Tambourgi <eliastam@feq.unicamp.br> [rev]
Maintainer: Diego F Coelho <diegofcoelho@gmail.com>
Diff between LLSR versions 0.0.2.12 dated 2019-02-15 and 0.0.2.19 dated 2019-03-05
LLSR-0.0.2.12/LLSR/R/AQSys.gsnchk.R |only LLSR-0.0.2.12/LLSR/R/AQSys.mrgsn.R |only LLSR-0.0.2.12/LLSR/R/AQSysEvalAnimation.R |only LLSR-0.0.2.12/LLSR/man/AQSys.gsnchk.Rd |only LLSR-0.0.2.12/LLSR/man/AQSysAnima.Rd |only LLSR-0.0.2.19/LLSR/DESCRIPTION | 18 +-- LLSR-0.0.2.19/LLSR/MD5 | 87 +++++++-------- LLSR-0.0.2.19/LLSR/NAMESPACE | 7 - LLSR-0.0.2.19/LLSR/R/AQSearch.Binodal.R | 50 +++----- LLSR-0.0.2.19/LLSR/R/AQSearch.Parameter.R | 57 +++------- LLSR-0.0.2.19/LLSR/R/AQSearch.R | 4 LLSR-0.0.2.19/LLSR/R/AQSearch.Slope.R | 58 ++++------ LLSR-0.0.2.19/LLSR/R/AQSearch.Tieline.R | 58 ++++------ LLSR-0.0.2.19/LLSR/R/AQSearchUtils.R | 10 - LLSR-0.0.2.19/LLSR/R/AQSys.Bancroft_Othmer.R |only LLSR-0.0.2.19/LLSR/R/AQSys.CriticalPoint.R | 14 +- LLSR-0.0.2.19/LLSR/R/AQSys.LevArmRule.R | 7 - LLSR-0.0.2.19/LLSR/R/AQSys.R | 79 +++++++++++--- LLSR-0.0.2.19/LLSR/R/AQSys.err.R | 2 LLSR-0.0.2.19/LLSR/R/AQSysCurve.R | 2 LLSR-0.0.2.19/LLSR/R/AQSysDB.R | 15 -- LLSR-0.0.2.19/LLSR/R/AQSysDOE.R | 17 ++- LLSR-0.0.2.19/LLSR/R/AQSysEval.R | 13 +- LLSR-0.0.2.19/LLSR/R/AQSysPlot.R | 17 ++- LLSR-0.0.2.19/LLSR/R/AQSysUtils.R | 152 +++++++++++++++------------ LLSR-0.0.2.19/LLSR/R/CritPointSeq.R | 6 - LLSR-0.0.2.19/LLSR/R/LLSRUtils.R | 19 +++ LLSR-0.0.2.19/LLSR/R/datasets.R | 32 +++-- LLSR-0.0.2.19/LLSR/data/llsr_data.rda |binary LLSR-0.0.2.19/LLSR/man/AQSearch.Binodal.Rd | 4 LLSR-0.0.2.19/LLSR/man/AQSearch.Parameter.Rd | 4 LLSR-0.0.2.19/LLSR/man/AQSearch.Rd | 4 LLSR-0.0.2.19/LLSR/man/AQSearch.Slope.Rd | 4 LLSR-0.0.2.19/LLSR/man/AQSearch.Tieline.Rd | 4 LLSR-0.0.2.19/LLSR/man/AQSys.CritPoint.Rd | 15 +- LLSR-0.0.2.19/LLSR/man/AQSys.LevArmRule.Rd | 7 - LLSR-0.0.2.19/LLSR/man/AQSys.Rd | 8 - LLSR-0.0.2.19/LLSR/man/AQSys.data.Rd |only LLSR-0.0.2.19/LLSR/man/AQSys.plot.Rd | 8 - LLSR-0.0.2.19/LLSR/man/AQSysBancroft.Rd | 8 - LLSR-0.0.2.19/LLSR/man/AQSysCurve.Rd | 2 LLSR-0.0.2.19/LLSR/man/AQSysDB.Rd | 4 LLSR-0.0.2.19/LLSR/man/AQSysDOE.Rd | 18 ++- LLSR-0.0.2.19/LLSR/man/AQSysEval.Rd | 8 - LLSR-0.0.2.19/LLSR/man/AQSysOthmer.Rd | 8 - LLSR-0.0.2.19/LLSR/man/AQSysPlot.Rd | 18 ++- LLSR-0.0.2.19/LLSR/man/llsr_data.Rd | 23 ++-- LLSR-0.0.2.19/LLSR/man/peg4kslt.Rd | 13 -- 48 files changed, 478 insertions(+), 406 deletions(-)
Title: Continuous-Lag Spatial Markov Chains
Description: A set of functions is provided for 1) the stratum lengths analysis along a chosen direction, 2) fast estimation of continuous lag spatial Markov chains model parameters and probability computing (also for large data sets), 3) transition probability maps and transiograms drawing, 4) simulation methods for categorical random fields.
Author: Luca Sartore
Maintainer: Luca Sartore <drwolf85@gmail.com>
Diff between spMC versions 0.3.9 dated 2018-02-12 and 0.3.10 dated 2019-03-05
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 6 ++++++ man/spMC-package.Rd | 4 ++-- src/spMC.c | 7 ++++--- 5 files changed, 20 insertions(+), 13 deletions(-)
Title: Visualize 'Reproducibility' and 'Replicability' in a Comparison
of Scientific Studies
Description: Users may specify what fundamental qualities of a new study have
or have not changed in an attempt to reproduce or replicate an
original study. A comparison of the differences is visualized.
Visualization approach follows 'Patil', 'Peng', and
'Leek' (2016) <doi:10.1101/066803>.
Author: Prasad Patil [aut, cre],
Gehlenborg Nils [ctb],
Muschelli John [ctb],
Leek Jeff [aut]
Maintainer: Prasad Patil <prpatil42@gmail.com>
Diff between scifigure versions 0.1.1 dated 2017-07-19 and 0.2 dated 2019-03-05
DESCRIPTION | 32 + MD5 | 52 ++ R/data.R | 15 R/init_experiments.R | 28 - R/replicate_figure.R | 2 R/reproduce_figure.R | 2 R/sci_figure.R | 163 +++++--- build/vignette.rds |binary data/icons_diff.RData |only inst/CITATION |only inst/doc/Visualizing_Scientific_Replication.R | 54 ++ inst/doc/Visualizing_Scientific_Replication.Rmd | 213 +++++++---- inst/doc/Visualizing_Scientific_Replication.html | 419 +++++++++++++++++++---- inst/extdata |only man/icons.Rd | 4 man/icons_diff.Rd |only man/init_experiments.Rd | 18 man/sci_figure.Rd | 47 ++ tests |only vignettes/Visualizing_Scientific_Replication.Rmd | 213 +++++++---- 20 files changed, 946 insertions(+), 316 deletions(-)
Title: Combinatorial Efficient Global Optimization
Description: Model building, surrogate model
based optimization and Efficient Global Optimization in combinatorial
or mixed search spaces.
Author: Martin Zaefferer <mzaefferer@gmail.com>
Maintainer: Martin Zaefferer <mzaefferer@gmail.com>
Diff between CEGO versions 2.2.0 dated 2017-07-12 and 2.3.0 dated 2019-03-05
DESCRIPTION | 10 +- MD5 | 50 +++++++------- NEWS | 10 ++ R/DoE.R | 6 - R/cegoPackage.R | 4 - R/indefiniteLearning.R | 25 +++---- R/modelKriging.R | 35 +++++++-- R/modelKrigingLikelihood.R | 26 +++---- R/modelKrigingPredict.R | 103 +++++++++++++++++++++++++++-- R/optimCEGO.R | 33 ++++++--- R/optimEA.R | 37 +++++++++- R/optimInterface.R | 2 R/optimMIES.R | 63 ++++++++++------- R/permutationDistances.r | 3 R/testFunctionGeneration.R | 4 - man/CEGO-package.Rd | 4 - man/correctionKernelMatrix.Rd | 3 man/designRandom.Rd | 6 - man/distancePermutationInsert.Rd | 3 man/modelKrigingInit.Rd | 8 +- man/modelKrigingParameterizedLikelihood.Rd | 8 +- man/optimEA.Rd | 35 +++++++++ man/optimInterface.Rd | 3 man/optimMIES.Rd | 16 ++-- man/tournamentSelection.Rd | 3 src/permutationDistance.c | 14 ++- 26 files changed, 366 insertions(+), 148 deletions(-)
Title: Bayesian Network Structure Learning, Parameter Learning and
Inference
Description: Bayesian network structure learning, parameter learning and
inference.
This package implements constraint-based (PC, GS, IAMB, Inter-IAMB, Fast-IAMB,
MMPC, Hiton-PC), pairwise (ARACNE and Chow-Liu), score-based (Hill-Climbing
and Tabu Search) and hybrid (MMHC and RSMAX2) structure learning algorithms
for discrete, Gaussian and conditional Gaussian networks, along with many
score functions and conditional independence tests.
The Naive Bayes and the Tree-Augmented Naive Bayes (TAN) classifiers are
also implemented.
Some utility functions (model comparison and manipulation, random data
generation, arc orientation testing, simple and advanced plots) are
included, as well as support for parameter estimation (maximum likelihood
and Bayesian) and inference, conditional probability queries and
cross-validation. Development snapshots with the latest bugfixes are
available from <http://www.bnlearn.com>.
Author: Marco Scutari [aut, cre], Robert Ness [ctb]
Maintainer: Marco Scutari <marco.scutari@gmail.com>
Diff between bnlearn versions 4.4 dated 2018-10-16 and 4.4.1 dated 2019-03-05
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/ci.test.R | 2 +- man/bnlearn-package.Rd | 4 ++-- src/bayesian.network.c | 16 +++++++++++++--- src/cpdist.c | 4 ++-- src/score.delta.c | 49 +++++++++++++++++++++++++++++-------------------- 7 files changed, 57 insertions(+), 38 deletions(-)
Title: Automagically Document and Install Packages Necessary to Run R
Code
Description: Parse R code in a given directory for R packages and attempt to install them from CRAN or GitHub. Optionally use a dependencies file for tighter control over which package versions to install.
Author: Cole Brokamp [aut, cre],
Steph Locke [ctb]
Maintainer: Cole Brokamp <cole.brokamp@gmail.com>
Diff between automagic versions 0.3 dated 2017-02-26 and 0.5.1 dated 2019-03-05
automagic-0.3/automagic/README.md |only automagic-0.5.1/automagic/DESCRIPTION | 21 +++-- automagic-0.5.1/automagic/MD5 | 35 +++++---- automagic-0.5.1/automagic/NAMESPACE | 15 ---- automagic-0.5.1/automagic/NEWS.md |only automagic-0.5.1/automagic/R/automagic.R | 9 +- automagic-0.5.1/automagic/R/deps_file.R | 25 ++---- automagic-0.5.1/automagic/R/get_dependent_packages.R | 2 automagic-0.5.1/automagic/R/install_package_guess.R | 47 ++++-------- automagic-0.5.1/automagic/R/parse_packages.R | 60 +++++++--------- automagic-0.5.1/automagic/R/pipe.R |only automagic-0.5.1/automagic/man/automagic.Rd | 3 automagic-0.5.1/automagic/man/get_dependent_packages.Rd | 1 automagic-0.5.1/automagic/man/get_package_details.Rd | 1 automagic-0.5.1/automagic/man/install_deps_file.Rd | 1 automagic-0.5.1/automagic/man/install_package_guess.Rd | 18 ++-- automagic-0.5.1/automagic/man/make_deps_file.Rd | 1 automagic-0.5.1/automagic/man/parse_packages.Rd | 3 automagic-0.5.1/automagic/man/pipe.Rd |only automagic-0.5.1/automagic/tests |only 20 files changed, 104 insertions(+), 138 deletions(-)
Title: Prediction of Wildland Fire Behavior and Hazard
Description: Fire behavior prediction models, including the Scott & Reinhardt's (2001) Rothermel Wildland Fire Modelling System <DOI:10.2737/RMRS-RP-29> and Alexander et al.'s (2006) Crown Fire Initiation & Spread model <DOI:10.1016/j.foreco.2006.08.174>. Also contains sample datasets, estimation of fire behavior prediction model inputs (e.g., fuel moisture, canopy characteristics, wind adjustment factor), results visualization, and methods to estimate fire weather hazard.
Author: Justin Ziegler [aut, cre]
Maintainer: Justin Ziegler <Justin.Ziegler@colostate.edu>
Diff between firebehavioR versions 0.1.1 dated 2018-10-26 and 0.1.2 dated 2019-03-05
DESCRIPTION | 6 MD5 | 18 NEWS.md | 9 R/fireChart_function.R | 2 R/rothermel_function.R | 449 ++++++++++------------ README.md | 2 inst/doc/firebehavioR.R | 2 inst/doc/firebehavioR.Rmd | 2 inst/doc/firebehavioR.html | 914 ++++++++++++++++++++++----------------------- vignettes/firebehavioR.Rmd | 2 10 files changed, 708 insertions(+), 698 deletions(-)
Title: Calculate Accurate Precision-Recall and ROC (Receiver Operator
Characteristics) Curves
Description: Accurate calculations and visualization of precision-recall and ROC (Receiver Operator Characteristics)
curves.
Author: Takaya Saito [aut, cre],
Marc Rehmsmeier [aut]
Maintainer: Takaya Saito <takaya.saito@outlook.com>
Diff between precrec versions 0.9.1 dated 2017-08-23 and 0.10 dated 2019-03-05
DESCRIPTION | 11 +-- MD5 | 31 +++++----- NEWS.md | 5 + R/RcppExports.R | 8 +- R/etc_create_samples.R | 4 - R/etc_utils_validate_args.R | 2 R/pl5_create_curves.R | 2 R/pl6_calc_average.R | 2 build/vignette.rds |binary inst/doc/introduction.html | 132 +++++++++++++++++++++++++------------------ man/as.data.frame.Rd | 3 man/autoplot.Rd | 16 ++--- man/fortify.Rd | 32 +++++----- man/mmdata.Rd | 8 +- src/Makevars |only src/RcppExports.cpp | 24 +++---- src/sort_indices_by_scores.h | 1 17 files changed, 156 insertions(+), 125 deletions(-)
Title: Infrastructure for Running, Cycling and Swimming Data from
GPS-Enabled Tracking Devices
Description: Provides infrastructure for handling running, cycling and swimming data from GPS-enabled tracking devices within R. The package provides methods to extract, clean and organise workout and competition data into session-based and unit-aware data objects of class 'trackeRdata' (S3 class). The information can then be visualised, summarised, and analysed through flexible and extensible methods. Frick and Kosmidis (2017) <doi: 10.18637/jss.v082.i07>, which is updated and maintained as one of the vignettes, provides detailed descriptions of the package and its methods, and real-data demonstrations of the package functionality.
Author: Ioannis Kosmidis [aut, cre] (<https://orcid.org/0000-0003-1556-0302>),
Hannah Frick [aut] (<https://orcid.org/0000-0002-6049-5258>),
Robin Hornak [aut]
Maintainer: Ioannis Kosmidis <ioannis.kosmidis@warwick.ac.uk>
Diff between trackeR versions 1.2.0 dated 2018-10-12 and 1.3.0 dated 2019-03-05
trackeR-1.2.0/trackeR/inst/classifier.R |only trackeR-1.2.0/trackeR/inst/notes.org |only trackeR-1.3.0/trackeR/DESCRIPTION | 8 - trackeR-1.3.0/trackeR/MD5 | 47 +++++----- trackeR-1.3.0/trackeR/NEWS.md | 15 +++ trackeR-1.3.0/trackeR/R/thresholds.R | 64 ++++++-------- trackeR-1.3.0/trackeR/R/trackeRdata_plot.R | 53 ++++++++--- trackeR-1.3.0/trackeR/build/vignette.rds |binary trackeR-1.3.0/trackeR/inst/art |only trackeR-1.3.0/trackeR/inst/doc/TourDetrackeR.html | 51 ++++++++--- trackeR-1.3.0/trackeR/inst/doc/trackeR.pdf |binary trackeR-1.3.0/trackeR/man/Wexp.Rd | 3 trackeR-1.3.0/trackeR/man/Wprime.Rd | 4 trackeR-1.3.0/trackeR/man/conversions.Rd | 2 trackeR-1.3.0/trackeR/man/distribution_profile.Rd | 4 trackeR-1.3.0/trackeR/man/funPCA.Rd | 1 trackeR-1.3.0/trackeR/man/get_profile.Rd | 6 - trackeR-1.3.0/trackeR/man/impute_speeds.Rd | 8 - trackeR-1.3.0/trackeR/man/plot.trackeRdata.Rd | 3 trackeR-1.3.0/trackeR/man/plot_route.Rd | 33 ++++--- trackeR-1.3.0/trackeR/man/readX.Rd | 16 +-- trackeR-1.3.0/trackeR/man/read_directory.Rd | 16 +-- trackeR-1.3.0/trackeR/man/session_duration.Rd | 3 trackeR-1.3.0/trackeR/man/smoother.trackeRdata.Rd | 4 trackeR-1.3.0/trackeR/man/smoother_control.trackeRdata.Rd | 10 +- trackeR-1.3.0/trackeR/man/threshold.trackeRdata.Rd | 5 - 26 files changed, 215 insertions(+), 141 deletions(-)
Title: Fast and Simple 'MongoDB' Client for R
Description: High-performance MongoDB client based on 'mongo-c-driver' and 'jsonlite'.
Includes support for aggregation, indexing, map-reduce, streaming, encryption,
enterprise authentication, and GridFS. The online user manual provides an overview
of the available methods in the package: <https://jeroen.github.io/mongolite/>.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>),
MongoDB, Inc [cph] (Bundled mongo-c-driver, see AUTHORS file)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between mongolite versions 2.0 dated 2018-08-09 and 2.0.1 dated 2019-03-05
mongolite-2.0.1/mongolite/DESCRIPTION | 15 ++--- mongolite-2.0.1/mongolite/MD5 | 52 +++--------------- mongolite-2.0.1/mongolite/NEWS | 3 + mongolite-2.0.1/mongolite/R/gridfs.R | 2 mongolite-2.0.1/mongolite/man/gridfs.Rd | 2 mongolite-2.0.1/mongolite/src/Makevars.win | 8 ++ mongolite-2.0.1/mongolite/src/bson/bson-iso8601.c | 2 mongolite-2.0.1/mongolite/src/collection.c | 8 +- mongolite-2.0.1/mongolite/src/gridfs.c | 14 +++- mongolite-2.0.1/mongolite/src/reader.c | 6 +- mongolite-2.0/mongolite/tests/testthat/specifications |only 11 files changed, 47 insertions(+), 65 deletions(-)
Title: Format R Code Automatically
Description: Provides a function tidy_source() to format R source code. Spaces
and indent will be added to the code automatically, and comments will be
preserved under certain conditions, so that R code will be more
human-readable and tidy. There is also a Shiny app as a user interface in
this package (see tidy_app()).
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Eugene Ha [ctb],
Kohske Takahashi [ctb],
Ed Lee [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between formatR versions 1.5 dated 2017-04-25 and 1.6 dated 2019-03-05
DESCRIPTION | 18 - MD5 | 22 - NEWS | 8 R/tidy.R | 9 R/utils.R | 6 README.md | 3 build/vignette.rds |binary inst/doc/formatR.R | 37 ++ inst/doc/formatR.Rmd | 29 ++ inst/doc/formatR.html | 645 ++++++++++++++++++++++++++++++++++++-------------- man/tidy_source.Rd | 18 - vignettes/formatR.Rmd | 29 ++ 12 files changed, 599 insertions(+), 225 deletions(-)
Title: Convenience Functions, Moving Window Statistics, and Graphics
Description: Contains functions that do something convenient (e.g. create BMI categories), functions for calculating moving-window statistics efficiently, and functions for generating various figures (e.g. histograms with fitted probability mass/density function).
Author: Dane R. Van Domelen
Maintainer: Dane R. Van Domelen <vandomed@gmail.com>
Diff between dvmisc versions 1.1.2 dated 2018-02-05 and 1.1.3 dated 2019-03-05
dvmisc-1.1.2/dvmisc/R/mean_n.R |only dvmisc-1.1.2/dvmisc/R/pooled_var_i.R |only dvmisc-1.1.2/dvmisc/R/pooled_var_n.R |only dvmisc-1.1.2/dvmisc/R/sd_i.R |only dvmisc-1.1.2/dvmisc/R/sd_n.R |only dvmisc-1.1.2/dvmisc/man/cov_i.Rd |only dvmisc-1.1.2/dvmisc/man/cov_n.Rd |only dvmisc-1.1.2/dvmisc/man/diff1_i.Rd |only dvmisc-1.1.2/dvmisc/man/diff1_n.Rd |only dvmisc-1.1.2/dvmisc/man/diff_i.Rd |only dvmisc-1.1.2/dvmisc/man/diff_n.Rd |only dvmisc-1.1.2/dvmisc/man/mean_n.Rd |only dvmisc-1.1.2/dvmisc/man/pooled_var_i.Rd |only dvmisc-1.1.2/dvmisc/man/pooled_var_n.Rd |only dvmisc-1.1.2/dvmisc/man/range_i.Rd |only dvmisc-1.1.2/dvmisc/man/range_n.Rd |only dvmisc-1.1.2/dvmisc/man/sd_i.Rd |only dvmisc-1.1.2/dvmisc/man/sd_n.Rd |only dvmisc-1.1.2/dvmisc/man/true_range_i.Rd |only dvmisc-1.1.2/dvmisc/man/true_range_n.Rd |only dvmisc-1.1.2/dvmisc/man/var_i.Rd |only dvmisc-1.1.2/dvmisc/man/var_n.Rd |only dvmisc-1.1.2/dvmisc/man/weighted_mean_ii.Rd |only dvmisc-1.1.2/dvmisc/man/weighted_mean_in.Rd |only dvmisc-1.1.2/dvmisc/man/weighted_mean_ni.Rd |only dvmisc-1.1.2/dvmisc/man/weighted_mean_nn.Rd |only dvmisc-1.1.2/dvmisc/src/cov_i.cpp |only dvmisc-1.1.2/dvmisc/src/cov_n.cpp |only dvmisc-1.1.2/dvmisc/src/diff1_i.cpp |only dvmisc-1.1.2/dvmisc/src/diff1_n.cpp |only dvmisc-1.1.2/dvmisc/src/diff_i.cpp |only dvmisc-1.1.2/dvmisc/src/diff_n.cpp |only dvmisc-1.1.2/dvmisc/src/range_i.cpp |only dvmisc-1.1.2/dvmisc/src/range_n.cpp |only dvmisc-1.1.2/dvmisc/src/true_range_i.cpp |only dvmisc-1.1.2/dvmisc/src/true_range_n.cpp |only dvmisc-1.1.2/dvmisc/src/var_i.cpp |only dvmisc-1.1.2/dvmisc/src/var_n.cpp |only dvmisc-1.1.2/dvmisc/src/weighted_mean_ii.cpp |only dvmisc-1.1.2/dvmisc/src/weighted_mean_in.cpp |only dvmisc-1.1.2/dvmisc/src/weighted_mean_ni.cpp |only dvmisc-1.1.2/dvmisc/src/weighted_mean_nn.cpp |only dvmisc-1.1.3/dvmisc/DESCRIPTION | 25 dvmisc-1.1.3/dvmisc/MD5 | 158 +++-- dvmisc-1.1.3/dvmisc/NAMESPACE | 82 ++- dvmisc-1.1.3/dvmisc/R/RcppExports.R | 478 +----------------- dvmisc-1.1.3/dvmisc/R/dots_bars.R | 152 ++++- dvmisc-1.1.3/dvmisc/R/dvmisc.R | 38 + dvmisc-1.1.3/dvmisc/R/expand_grid.R |only dvmisc-1.1.3/dvmisc/R/gammareg.R |only dvmisc-1.1.3/dvmisc/R/headtail.R | 8 dvmisc-1.1.3/dvmisc/R/histo.R | 717 +++++++++++++++++++-------- dvmisc-1.1.3/dvmisc/R/interval_groups.R | 4 dvmisc-1.1.3/dvmisc/R/iterate.R |only dvmisc-1.1.3/dvmisc/R/list_override.R | 5 dvmisc-1.1.3/dvmisc/R/lognormalreg.R |only dvmisc-1.1.3/dvmisc/R/mle_gamma.R |only dvmisc-1.1.3/dvmisc/R/mle_gamma_lnorm.R |only dvmisc-1.1.3/dvmisc/R/mle_lnorm.R |only dvmisc-1.1.3/dvmisc/R/mle_lnorm_lnorm.R |only dvmisc-1.1.3/dvmisc/R/moving_mean.R |only dvmisc-1.1.3/dvmisc/R/n_2t_equal.R |only dvmisc-1.1.3/dvmisc/R/n_2t_unequal.R |only dvmisc-1.1.3/dvmisc/R/plot_ll.R |only dvmisc-1.1.3/dvmisc/R/pooled_var.R |only dvmisc-1.1.3/dvmisc/R/power_2t_equal.R |only dvmisc-1.1.3/dvmisc/R/power_2t_unequal.R |only dvmisc-1.1.3/dvmisc/R/quant_groups.R | 21 dvmisc-1.1.3/dvmisc/R/quant_groups_svy.R |only dvmisc-1.1.3/dvmisc/R/sliding_cor.R |only dvmisc-1.1.3/dvmisc/R/sliding_cov.R |only dvmisc-1.1.3/dvmisc/R/sumsim.R | 118 +++- dvmisc-1.1.3/dvmisc/R/truerange.R |only dvmisc-1.1.3/dvmisc/R/which_max2.R |only dvmisc-1.1.3/dvmisc/R/which_min2.R |only dvmisc-1.1.3/dvmisc/build |only dvmisc-1.1.3/dvmisc/inst |only dvmisc-1.1.3/dvmisc/man/dots_bars.Rd | 45 + dvmisc-1.1.3/dvmisc/man/dvmisc.Rd | 28 - 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Title: Statistical Methods for Phenology Analysis in Temperate Fruit
Trees
Description: The phenology of plants (i.e. the timing of their annual life
phases) depends on climatic cues. For temperate trees and many other plants,
spring phases, such as leaf emergence and flowering, have been found to result
from the effects of both cool (chilling) conditions and heat. Fruit tree
scientists (pomologists) have developed some metrics to quantify chilling
and heat (e.g. see Luedeling (2012) <doi.org/10.1016/j.scienta.2012.07.011>).
'chillR' contains functions for processing temperature records into
chilling (Chilling Hours, Utah Chill Units and Chill Portions) and heat units
(Growing Degree Hours). Regarding chilling metrics, Chill Portions are often
considered the most promising, but they are difficult to calculate. This package
makes it easy. 'chillR' also contains procedures for conducting a PLS analysis
relating phenological dates (e.g. bloom dates) to either mean temperatures or
mean chill and heat accumulation rates, based on long-term weather and phenology
records (Luedeling and Gassner (2012) <doi.org/10.1016/j.agrformet.2011.10.020>).
As of version 0.65, it also includes functions for generating weather
scenarios with a weather generator, for conducting climate change analyses
for temperature-based climatic metrics and for plotting results from such
analyses. Since version 0.70, 'chillR' contains a function for interpolating
hourly temperature records.
Author: Eike Luedeling
Maintainer: Eike Luedeling <eike@eikeluedeling.com>
Diff between chillR versions 0.70.14 dated 2019-02-15 and 0.70.15 dated 2019-03-05
DESCRIPTION | 9 +++++---- MD5 | 4 ++-- inst/doc/hourly_temperatures.html | 4 ++-- 3 files changed, 9 insertions(+), 8 deletions(-)
Title: Estimating Abundance of Clones from DNA Fragmentation Data
Description: Estimate the abundance of cell clones from the
distribution of lengths of DNA fragments (as created by
sonication, whence `sonicLength'). The algorithm in
"Estimating abundances of retroviral insertion sites from
DNA fragment length data" by Berry CC, Gillet NA, Melamed
A, Gormley N, Bangham CR, Bushman FD. Bioinformatics;
2012 Mar 15;28(6):755-62 is implemented. The
experimental setting and estimation details are described
in detail there. Briefly, integration of new DNA in a
host genome (due to retroviral infection or gene therapy)
can be tracked using DNA sequencing, potentially allowing
characterization of the abundance of individual cell
clones bearing distinct integration sites. The locations
of integration sites can be determined by fragmenting the
host DNA (via sonication or fragmentase), breaking the
newly integrated DNA at a known sequence, amplifying the
fragments containing both host and integrated DNA,
sequencing those amplicons, then mapping the host
sequences to positions on the reference genome. The
relative number of fragments containing a given position
in the host genome estimates the relative abundance of
cells hosting the corresponding integration site, but
that number is not available and the count of amplicons
per fragment varies widely. However, the expected number
of distinct fragment lengths is a function of the
abundance of cells hosting an integration site at a given
position and a certain nuisance parameter. The algorithm
implicitly estimates that function to estimate the
relative abundance.
Author: Charles Berry <ccberry@ucsd.edu>
Maintainer: Charles Berry <ccberry@ucsd.edu>
Diff between sonicLength versions 1.4.4 dated 2014-08-23 and 1.4.6 dated 2019-03-05
DESCRIPTION | 14 +++--- MD5 | 26 ++++++------ NAMESPACE | 3 + R/estAbund.R | 23 ++++++---- R/pad.tab.R | 41 ++++++++++-------- R/simFragment.R | 106 ++++++++++++++++++++++++------------------------- build/vignette.rds |binary data/A1.RData |binary inst/CITATION | 2 inst/doc/EstAbund.R | 13 +++--- inst/doc/EstAbund.Rnw | 15 ++++-- inst/doc/EstAbund.pdf |binary man/estAbund.Rd | 5 +- vignettes/EstAbund.Rnw | 15 ++++-- 14 files changed, 143 insertions(+), 120 deletions(-)
Title: Objective Bayesian Model Discrimination in Follow-Up Designs
Description: Implements the objective Bayesian methodology proposed in Consonni and Deldossi in order to choose the optimal experiment that better discriminate between competing models. G.Consonni, L. Deldossi (2014) Objective Bayesian Model Discrimination in Follow-up Experimental Designs, Test. <DOI:10.1007/s11749-015-0461-3>.
Author: Laura Deldossi and Marta Nai Ruscone based on Daniel Meyer's code (2016)
Maintainer: Marta Nai Ruscone <mnairuscone@liuc.it>
Diff between OBsMD versions 3.0 dated 2018-06-01 and 5.0 dated 2019-03-05
DESCRIPTION | 8 +-- MD5 | 8 +-- R/print.OBsProb.r | 117 +++++++++++++++++++++++++-------------------------- R/summary.OBsProb.R | 57 ++++++++++++------------ man/OBsMD-package.Rd | 4 - 5 files changed, 96 insertions(+), 98 deletions(-)
Title: Convert Rd to 'Roxygen' Documentation
Description: Functions to convert Rd to 'roxygen' documentation. It can parse an
Rd file to a list, create the 'roxygen' documentation and update the original
R script (e.g. the one containing the definition of the function)
accordingly. This package also provides utilities that can help developers
build packages using 'roxygen' more easily. The 'formatR' package can be used
to reformat the R code in the examples sections so that the code will be
more readable.
Author: Hadley Wickham [aut],
Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between Rd2roxygen versions 1.7 dated 2018-08-02 and 1.8 dated 2019-03-05
DESCRIPTION | 15 +++++----- MD5 | 20 +++++++------- NAMESPACE | 1 NEWS | 6 ++++ R/Rd2roxygen-package.R | 1 R/build.R | 7 +++- R/rd2roxygen.R | 3 +- R/utils.R | 3 +- README.md | 3 +- build/vignette.rds |binary inst/doc/Rd2roxygen.html | 66 +++++++++++++++++++++++++++++------------------ 11 files changed, 76 insertions(+), 49 deletions(-)
Title: Multivariate Menu for Radiant: Business Analytics using R and
Shiny
Description: The Radiant Multivariate menu includes interfaces for perceptual
mapping, factor analysis, cluster analysis, and conjoint analysis. The
application extends the functionality in radiant.data.
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>
Diff between radiant.multivariate versions 0.9.7 dated 2018-10-06 and 0.9.9 dated 2019-03-05
DESCRIPTION | 14 ++-- MD5 | 54 ++++++++-------- NEWS.md | 15 ++++ R/aaa.R | 2 R/conjoint.R | 12 +-- R/full_factor.R | 37 +++++++---- R/hclus.R | 2 R/kclus.R | 34 +++++----- R/mds.R | 2 R/pre_factor.R | 25 +++---- R/prmap.R | 23 +++++-- R/radiant.R | 16 +++- inst/app/tools/analysis/conjoint_ui.R | 101 +++++++++++++++++-------------- inst/app/tools/analysis/full_factor_ui.R | 91 ++++++++++++++++----------- inst/app/tools/analysis/kclus_ui.R | 62 +++++++------------ inst/app/tools/analysis/pre_factor_ui.R | 36 +++++------ inst/app/tools/analysis/prmap_ui.R | 24 +++---- inst/app/tools/help/conjoint.md | 2 inst/app/tools/help/full_factor.md | 2 inst/app/tools/help/hclus.md | 2 inst/app/tools/help/kclus.md | 2 inst/app/tools/help/mds.md | 2 inst/app/tools/help/pre_factor.md | 2 inst/app/tools/help/prmap.md | 2 man/plot.full_factor.Rd | 5 + man/radiant.multivariate.Rd | 7 +- man/radiant.multivariate_viewer.Rd | 7 +- man/radiant.multivariate_window.Rd | 7 +- 28 files changed, 335 insertions(+), 255 deletions(-)
More information about radiant.multivariate at CRAN
Permanent link
Title: Data Generation with Poisson, Binary and Ordinal Components
Description: Generation of multiple count, binary and ordinal variables simultaneously
given the marginal characteristics and association structure. Throughout the package,
the word 'Poisson' is used to imply count data under the assumption of Poisson distribution.
Author: Gul Inan, Hakan Demirtas, Ran Gao
Maintainer: Ran Gao <rgao8@uic.edu>
Diff between PoisBinOrd versions 1.3 dated 2018-01-03 and 1.4 dated 2019-03-05
PoisBinOrd-1.3/PoisBinOrd/R/intermediate.corr.P_BO.R |only PoisBinOrd-1.3/PoisBinOrd/man/intermediate.corr.P_BO.Rd |only PoisBinOrd-1.4/PoisBinOrd/DESCRIPTION | 12 - PoisBinOrd-1.4/PoisBinOrd/MD5 | 26 +- PoisBinOrd-1.4/PoisBinOrd/R/gen.PoisBinOrd.R | 139 ++++-------- PoisBinOrd-1.4/PoisBinOrd/R/intermediate.corr.PBO.R |only PoisBinOrd-1.4/PoisBinOrd/R/overall.corr.mat.R | 122 +++++------ PoisBinOrd-1.4/PoisBinOrd/man/PoisBinOrd-package.Rd | 96 ++++---- PoisBinOrd-1.4/PoisBinOrd/man/correlation.bound.check.Rd | 116 +++++----- PoisBinOrd-1.4/PoisBinOrd/man/correlation.limits.Rd | 164 +++++++-------- PoisBinOrd-1.4/PoisBinOrd/man/gen.PoisBinOrd.Rd | 98 ++++---- PoisBinOrd-1.4/PoisBinOrd/man/intermediate.corr.BO.Rd | 150 ++++++------- PoisBinOrd-1.4/PoisBinOrd/man/intermediate.corr.PBO.Rd |only PoisBinOrd-1.4/PoisBinOrd/man/intermediate.corr.PP.Rd | 76 +++--- PoisBinOrd-1.4/PoisBinOrd/man/overall.corr.mat.Rd | 86 +++---- PoisBinOrd-1.4/PoisBinOrd/man/validation.corr.Rd | 78 +++---- 16 files changed, 569 insertions(+), 594 deletions(-)
Title: Data Generation with Poisson, Binary and Continuous Components
Description: Generation of multiple count, binary and continuous variables simultaneously
given the marginal characteristics and association structure. Throughout the package,
the word 'Poisson' is used to imply count data under the assumption of Poisson distribution.
Author: Gul Inan, Hakan Demirtas, Ran Gao
Maintainer: Ran Gao <rgao8@uic.edu>
Diff between PoisBinNonNor versions 1.2 dated 2018-01-03 and 1.3 dated 2019-03-05
DESCRIPTION | 12 ++--- MD5 | 8 +-- R/fleishman.coef.R | 76 +++++++++++++++++---------------- man/PoisBinNonNor-package.Rd | 96 +++++++++++++++++++++--------------------- man/fleishman.coef.Rd | 98 +++++++++++++++++++++---------------------- 5 files changed, 148 insertions(+), 142 deletions(-)
Title: Generalized Propensity Score Cumulative Distribution Function
Description: Implements the generalized propensity score cumulative distribution
function proposed by Greene (2017)
<https://digitalcommons.library.tmc.edu/dissertations/AAI10681743/>.
A single scalar balancing score is calculated for any generalized propensity
score vector with three or more treatments. This balancing score is used for
propensity score matching and stratification in outcome analyses when analyzing
either ordinal or multinomial treatments.
Author: Derek W. Brown [aut, cre],
Thomas J. Greene [aut],
Stacia M. DeSantis [aut]
Maintainer: Derek W. Brown <derek9@gwu.edu>
Diff between GPSCDF versions 0.1.0 dated 2019-02-28 and 0.1.1 dated 2019-03-05
DESCRIPTION | 20 ++++++++++---------- MD5 | 6 +++--- R/GPSCDF.R | 9 +++------ tests/testthat/test-all.R | 6 ++---- 4 files changed, 18 insertions(+), 23 deletions(-)
Title: Distance Measure Based Judgment and Learning
Description: Implements various decision support tools related to the Econometrics & Technometrics.
Subroutines include correlation reliability test, Mahalanobis distance measure for outlier detection, combinatorial search (all possible subset regression), non-parametric efficiency analysis measures: DDF (directional distance function), DEA (data envelopment analysis), HDF (hyperbolic distance function), SBM (slack-based measure), and SF (shortage function), benchmarking, Malmquist productivity analysis, risk analysis, technology adoption model, new product target setting, etc.
Author: Dong-Joon Lim, PhD
Maintainer: Dong-Joon Lim <tgno3.com@gmail.com>
Diff between DJL versions 2.9.1 dated 2019-02-11 and 2.9.2 dated 2019-03-05
DESCRIPTION | 8 - MD5 | 10 +- NEWS | 11 ++ R/DJL-internal.R | 250 +++++++++++++++++++++++++++---------------------------- R/roc.hdf.R | 2 R/roc.sf.R | 2 6 files changed, 146 insertions(+), 137 deletions(-)
Title: Infrastructure for R Package Registries
Description: Provides a generic infrastructure for creating and using registries.
Author: David Meyer
Maintainer: David Meyer <David.Meyer@R-project.org>
Diff between registry versions 0.5 dated 2017-12-03 and 0.5-1 dated 2019-03-05
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/registry.R | 6 +++--- build/vignette.rds |binary inst/doc/registry.pdf |binary 5 files changed, 10 insertions(+), 10 deletions(-)
Title: Distance and Similarity Measures
Description: Provides an extensible framework for the efficient calculation of auto- and cross-proximities, along with implementations of the most popular ones.
Author: David Meyer [aut, cre],
Christian Buchta [aut]
Maintainer: David Meyer <David.Meyer@R-project.org>
Diff between proxy versions 0.4-22 dated 2018-04-08 and 0.4-23 dated 2019-03-05
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/registry.R | 6 +++--- build/vignette.rds |binary inst/NEWS.Rd | 8 +++++++- inst/doc/overview.pdf |binary src/apply.c | 18 +++++++++++------- 7 files changed, 30 insertions(+), 20 deletions(-)
Title: Copula-Based Regression Models for Bivariate Censored Data
Description: Copula-based regression models for bivariate censored data, including
bivariate right-censored data and bivariate interval-censored data. Currently
supports Clayton, Gumbel, Frank, Joe, AMH and Copula2 copula models. For
marginal models, it supports parametric (Weibull, Loglogistic, Gompertz),
weakly-parametric piecewise-constant hazards (only for bivariate right-censored)
and semiparametric transformation (only for bivariate interval-censored data)
models. Includes methods for convenient prediction and plotting. Also provides
a bivariate time-to-event simulation function. Method details can be found in
Sun et.al. (2018) < doi:10.1007/s10985-018-09459-5> and
Sun et.al (2019) <arXiv:1901.01918>.
Author: Tao Sun, Ying Ding
Maintainer: Tao Sun <tao.sun@pitt.edu>
Diff between CopulaCenR versions 0.1.0 dated 2019-03-04 and 1.0.0 dated 2019-03-05
DESCRIPTION | 10 - MD5 | 70 ++++--- NAMESPACE | 6 R/data_sim_copula.R | 96 +++++++--- R/fitted.CopulaCenR.R |only R/fun_S3.R | 90 +++++++--- R/fun_loglik.R | 34 ++- R/fun_plots.R | 110 ++++++++++-- R/fun_pseudo_loglik.R | 19 +- R/ic_par_copula.R | 298 +++++++++++++++++++++------------ R/ic_sp_copula.R | 291 +++++++++++++++++++++----------- R/lines.CopulaCenR.R | 156 ++++++++++++----- R/lrt_copula.R | 6 R/plot.CopulaCenR.R | 355 +++++++++++++++++++++++++++++++++------ R/predict.CopulaCenR.R | 196 ++++++++++++--------- R/rc_par_copula.R | 358 +++++++++++++++++++++++++++------------- R/score_copula.R | 9 - R/tau_copula.R | 56 +++++- man/AIC.CopulaCenR.Rd |only man/BIC.CopulaCenR.Rd |only man/CopulaCenR.Rd | 20 +- man/DRS.Rd | 4 man/coef.CopulaCenR.Rd | 4 man/data_sim_copula.Rd | 57 +++++- man/fitted.CopulaCenR.Rd |only man/ic_par_copula.Rd | 91 +++++++--- man/ic_sp_copula.Rd | 104 ++++++++--- man/lines.CopulaCenR.Rd | 110 +++++++----- man/logLik.CopulaCenR.Rd | 4 man/lrt_copula.Rd | 6 man/plot.CopulaCenR.Rd | 127 ++++++++------ man/predict.CopulaCenR.Rd | 68 +++---- man/print.CopulaCenR.Rd | 4 man/print.summary.CopulaCenR.Rd | 6 man/rc_par_copula.Rd | 94 ++++++++-- man/score_copula.Rd | 9 - man/summary.CopulaCenR.Rd | 4 man/tau_copula.Rd | 53 +++++ 38 files changed, 2050 insertions(+), 875 deletions(-)
Title: Visualize Data for Host and Viral Population from 'SMITIDstruct'
using HTMLwidgets
Description: Visualisation tools for 'SMITIDstruct' package.
Allow to visualize host timeline, transmission tree, index diversities
and variant graph using HTMLwidgets. It mainly using D3JS javascript framework.
Author: Jean-Francois Rey [aut, cre]
Maintainer: Jean-Francois Rey <jean-francois.rey@inra.fr>
Diff between SMITIDvisu versions 0.0.3 dated 2019-02-18 and 0.0.4 dated 2019-03-05
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- R/SMITIDvisu.R | 4 ++-- R/data-format.R | 29 ++++++++++++++++++++++++----- R/transmissionTree.R | 2 +- data/hostline.rda |binary data/st.rda |binary data/transmissiontree.rda |binary inst/htmlwidgets/lib/timeline.js | 7 +++++-- inst/htmlwidgets/lib/timetree.js | 2 +- man/SMITIDvisu-package.Rd | 4 ++-- man/transmissionTree.Rd | 2 +- 12 files changed, 51 insertions(+), 29 deletions(-)
Title: Data Structure and Manipulations Tool for Host and Viral
Population
Description: Statistical Methods for Inferring Transmissions of Infectious Diseases from deep sequencing data (SMITID).
It allow sequence-space-time host and viral population data storage, indexation and querying.
Author: Jean-Francois Rey [aut, cre]
Maintainer: Jean-Francois Rey <jean-francois.rey@inra.fr>
Diff between SMITIDstruct versions 0.0.3 dated 2019-02-01 and 0.0.4 dated 2019-03-05
DESCRIPTION | 13 +++---- MD5 | 29 +++++++++++----- NAMESPACE | 8 ++++ R/Methods-Host.R | 79 ++++++++++++++++++++++++++++++++++---------- R/Methods-ViralPop.R | 62 ++++++++++++++++++++++++++++++++++ R/Methods-time.R |only R/SMITIDstruct.R | 4 +- R/diversity.R | 9 +++-- R/index.R | 2 - man/SMITIDstruct-package.Rd | 4 +- man/createAViralPop.Rd |only man/getDate.Rd |only man/getTimestamp.Rd |only man/is.StringDate.Rd |only man/is.juliendate.Rd |only man/is.timestamp.Rd |only man/loadTree.Rd | 2 - man/loadTreeDF.Rd |only man/loadViralPopSet.Rd |only tests |only 20 files changed, 171 insertions(+), 41 deletions(-)
Title: Bindings to AppArmor and Security Related Linux Tools
Description: Bindings to kernel methods for enforcing security restrictions.
AppArmor can apply mandatory access control (MAC) policies on a given task
(process) via security profiles with detailed ACL definitions. In addition
this package implements bindings for setting process resource limits (rlimit),
uid, gid, affinity and priority. The high level R function 'eval.secure'
builds on these methods to perform dynamic sandboxing: it evaluates a single
R expression within a temporary fork which acts as a sandbox by enforcing
fine grained restrictions without affecting the main R process. A portable
version of this function is now available in the 'unix' package.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between RAppArmor versions 3.0 dated 2019-02-26 and 3.1 dated 2019-03-05
DESCRIPTION | 12 +++++++----- MD5 | 6 +++--- NEWS | 5 +++++ configure | 4 ++-- 4 files changed, 17 insertions(+), 10 deletions(-)
Title: Model Menu for Radiant: Business Analytics using R and Shiny
Description: The Radiant Model menu includes interfaces for linear and logistic
regression, naive Bayes, neural networks, classification and regression trees,
model evaluation, collaborative filtering, decision analysis, and simulation.
The application extends the functionality in radiant.data.
Author: Vincent Nijs [aut, cre]
Maintainer: Vincent Nijs <radiant@rady.ucsd.edu>
Diff between radiant.model versions 0.9.7 dated 2018-10-06 and 0.9.9 dated 2019-03-05
radiant.model-0.9.7/radiant.model/man/scaledf.Rd |only radiant.model-0.9.9/radiant.model/DESCRIPTION | 14 radiant.model-0.9.9/radiant.model/MD5 | 123 ++--- radiant.model-0.9.9/radiant.model/NAMESPACE | 17 radiant.model-0.9.9/radiant.model/NEWS.md | 29 + radiant.model-0.9.9/radiant.model/R/crs.R | 42 - radiant.model-0.9.9/radiant.model/R/crtree.R | 245 ++++++++-- radiant.model-0.9.9/radiant.model/R/deprecated.R | 5 radiant.model-0.9.9/radiant.model/R/dtree.R | 4 radiant.model-0.9.9/radiant.model/R/evalbin.R | 94 +++ radiant.model-0.9.9/radiant.model/R/evalreg.R | 47 + radiant.model-0.9.9/radiant.model/R/logistic.R | 97 ++- radiant.model-0.9.9/radiant.model/R/nb.R | 24 radiant.model-0.9.9/radiant.model/R/nn.R | 209 +++++++- radiant.model-0.9.9/radiant.model/R/radiant.R | 16 radiant.model-0.9.9/radiant.model/R/regress.R | 203 ++++---- radiant.model-0.9.9/radiant.model/R/rf.R |only radiant.model-0.9.9/radiant.model/R/simulater.R | 235 ++++++--- radiant.model-0.9.9/radiant.model/data/dvd.rda |binary radiant.model-0.9.9/radiant.model/inst/app/init.R | 2 radiant.model-0.9.9/radiant.model/inst/app/tools/analysis/crs_ui.R | 52 +- radiant.model-0.9.9/radiant.model/inst/app/tools/analysis/crtree_ui.R | 148 +++--- radiant.model-0.9.9/radiant.model/inst/app/tools/analysis/dtree_ui.R | 37 - radiant.model-0.9.9/radiant.model/inst/app/tools/analysis/evalbin_ui.R | 55 +- radiant.model-0.9.9/radiant.model/inst/app/tools/analysis/evalreg_ui.R | 2 radiant.model-0.9.9/radiant.model/inst/app/tools/analysis/logistic_ui.R | 139 +++-- radiant.model-0.9.9/radiant.model/inst/app/tools/analysis/naivebayes_ui.R | 84 +-- radiant.model-0.9.9/radiant.model/inst/app/tools/analysis/nn_ui.R | 78 +-- radiant.model-0.9.9/radiant.model/inst/app/tools/analysis/regress_ui.R | 107 ++-- radiant.model-0.9.9/radiant.model/inst/app/tools/analysis/simulater_ui.R | 222 ++++++--- radiant.model-0.9.9/radiant.model/inst/app/tools/help/crs.md | 2 radiant.model-0.9.9/radiant.model/inst/app/tools/help/crtree.md | 2 radiant.model-0.9.9/radiant.model/inst/app/tools/help/dtree.Rmd | 2 radiant.model-0.9.9/radiant.model/inst/app/tools/help/dtree.md | 2 radiant.model-0.9.9/radiant.model/inst/app/tools/help/evalbin.md | 8 radiant.model-0.9.9/radiant.model/inst/app/tools/help/evalreg.md | 4 radiant.model-0.9.9/radiant.model/inst/app/tools/help/logistic.Rmd | 2 radiant.model-0.9.9/radiant.model/inst/app/tools/help/logistic.md | 2 radiant.model-0.9.9/radiant.model/inst/app/tools/help/nb.md | 2 radiant.model-0.9.9/radiant.model/inst/app/tools/help/nn.md | 2 radiant.model-0.9.9/radiant.model/inst/app/tools/help/simulater.Rmd | 29 + radiant.model-0.9.9/radiant.model/inst/app/tools/help/simulater.md | 52 ++ radiant.model-0.9.9/radiant.model/inst/app/www/js/store.js | 10 radiant.model-0.9.9/radiant.model/man/MAE.Rd |only radiant.model-0.9.9/radiant.model/man/RMSE.Rd |only radiant.model-0.9.9/radiant.model/man/Rsq.Rd |only radiant.model-0.9.9/radiant.model/man/confusion.Rd | 2 radiant.model-0.9.9/radiant.model/man/crs.Rd | 2 radiant.model-0.9.9/radiant.model/man/crtree.Rd | 14 radiant.model-0.9.9/radiant.model/man/cv.crtree.Rd |only radiant.model-0.9.9/radiant.model/man/cv.nn.Rd |only radiant.model-0.9.9/radiant.model/man/evalbin.Rd | 2 radiant.model-0.9.9/radiant.model/man/evalreg.Rd | 2 radiant.model-0.9.9/radiant.model/man/find_max.Rd | 2 radiant.model-0.9.9/radiant.model/man/find_min.Rd | 2 radiant.model-0.9.9/radiant.model/man/profit.Rd |only radiant.model-0.9.9/radiant.model/man/radiant.model-deprecated.Rd | 1 radiant.model-0.9.9/radiant.model/man/radiant.model.Rd | 7 radiant.model-0.9.9/radiant.model/man/radiant.model_viewer.Rd | 7 radiant.model-0.9.9/radiant.model/man/radiant.model_window.Rd | 7 radiant.model-0.9.9/radiant.model/man/scale_df.Rd |only radiant.model-0.9.9/radiant.model/man/simulater.Rd | 7 radiant.model-0.9.9/radiant.model/man/summary.crs.Rd | 2 radiant.model-0.9.9/radiant.model/man/test_specs.Rd | 7 radiant.model-0.9.9/radiant.model/man/var_check.Rd | 4 radiant.model-0.9.9/radiant.model/man/write.coeff.Rd | 6 radiant.model-0.9.9/radiant.model/tests/testthat/test_stats.R | 33 + 67 files changed, 1736 insertions(+), 820 deletions(-)
Title: Statistical Reporting in Clinical Trials
Description: It enables to create easily formatted statistical tables in 'Microsoft Word' documents in pretty formats according to 'clinical standards'. It can be used also outside the scope of clinical trials, for any statistical reporting in 'Word'. Descriptive tables for quantitative statistics (mean, median, max etc..) and/or qualitative statistics (frequencies and percentages) are available and formatted tables of Least Square Means of Linear Models, Linear Mixed Models and Generalized Linear Mixed Models coming from emmeans() function are also available. The package works with 'officer' and 'flextable' packages to export the outputs into 'Microsoft Word' documents.
Author: Jean-Francois Collin
Maintainer: Jean-Francois Collin <jfcollin@live.fr>
Diff between ClinReport versions 0.9.1.8 dated 2019-02-27 and 0.9.1.10 dated 2019-03-05
ClinReport |only 1 file changed
Title: Testing Workbench for Precision-Recall Curves
Description: A testing workbench for evaluating precision-recall curves under various conditions.
Author: Takaya Saito [aut, cre],
Marc Rehmsmeier [aut]
Maintainer: Takaya Saito <takaya.saito@outlook.com>
Diff between prcbench versions 0.7.3 dated 2017-04-20 and 0.8 dated 2019-03-05
prcbench-0.7.3/prcbench/java/auc2/auc2.iml |only prcbench-0.8/prcbench/DESCRIPTION | 11 +- prcbench-0.8/prcbench/MD5 | 23 ++--- prcbench-0.8/prcbench/NEWS.md | 4 prcbench-0.8/prcbench/R/tool_interface.R | 2 prcbench-0.8/prcbench/R/tool_zzz.R | 9 + prcbench-0.8/prcbench/README.md | 16 +-- prcbench-0.8/prcbench/build/vignette.rds |binary prcbench-0.8/prcbench/inst/doc/introduction.html | 55 ++++++++---- prcbench-0.8/prcbench/man/autoplot.Rd | 5 - prcbench-0.8/prcbench/man/create_usrdata.Rd | 6 - prcbench-0.8/prcbench/man/create_usrtool.Rd | 4 prcbench-0.8/prcbench/tests/testthat/test_main_evalcurves.R | 12 +- 13 files changed, 90 insertions(+), 57 deletions(-)
Title: Simultaneous Inference in General Parametric Models
Description: Simultaneous tests and confidence intervals
for general linear hypotheses in parametric models, including
linear, generalized linear, linear mixed effects, and survival models.
The package includes demos reproducing analyzes presented
in the book "Multiple Comparisons Using R" (Bretz, Hothorn,
Westfall, 2010, CRC Press).
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>),
Frank Bretz [aut],
Peter Westfall [aut],
Richard M. Heiberger [ctb],
Andre Schuetzenmeister [ctb],
Susan Scheibe [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between multcomp versions 1.4-8 dated 2017-11-08 and 1.4-10 dated 2019-03-05
DESCRIPTION | 19 ++++++------- MD5 | 36 ++++++++++++------------ R/cld.R | 2 + R/contrMat.R | 4 +- R/mcp.R | 12 +++++--- build/vignette.rds |binary data/cholesterol.rda |binary data/litter.rda |binary inst/NEWS | 8 +++++ inst/doc/chfls1.R | 1 inst/doc/chfls1.Rnw | 3 -- inst/doc/chfls1.pdf |binary inst/doc/generalsiminf.pdf |binary inst/doc/multcomp-examples.pdf |binary man/glht.Rd | 7 ++++ tests/Examples/multcomp-Ex.Rout.save | 51 +++++++++++++++++++++++++++++------ tests/bugfix.R | 1 tests/bugfix.Rout.save | 22 +++++++++------ vignettes/chfls1.Rnw | 3 -- 19 files changed, 115 insertions(+), 54 deletions(-)
Title: Bayesian Dynamic Factor Analysis (DFA) with 'Stan'
Description: Implements Bayesian dynamic factor analysis with 'Stan'. Dynamic
factor analysis is a dimension reduction tool for multivariate time series.
'bayesdfa' extends conventional dynamic factor models in several ways.
First, extreme events may be estimated in the latent trend by modeling
process error with a student-t distribution. Second, autoregressive and
moving average components can be optionally included. Third, the estimated
dynamic factors can be analyzed with hidden Markov models to evaluate
support for latent regimes.
Author: Eric J. Ward [aut, cre],
Sean C. Anderson [aut],
Luis A. Damiano [aut],
Mary E. Hunsicker, [ctb],
Mike A. Litzow [ctb],
Trustees of Columbia University [cph]
Maintainer: Eric J. Ward <eric.ward@noaa.gov>
Diff between bayesdfa versions 0.1.1 dated 2018-11-09 and 0.1.2 dated 2019-03-05
bayesdfa-0.1.1/bayesdfa/exec |only bayesdfa-0.1.1/bayesdfa/inst/chunks |only bayesdfa-0.1.1/bayesdfa/src/RcppExports.cpp |only bayesdfa-0.1.1/bayesdfa/src/include |only bayesdfa-0.1.1/bayesdfa/tools/make_cpp.R |only bayesdfa-0.1.2/bayesdfa/DESCRIPTION | 16 +-- bayesdfa-0.1.2/bayesdfa/MD5 | 60 +++++------ bayesdfa-0.1.2/bayesdfa/NAMESPACE | 1 bayesdfa-0.1.2/bayesdfa/NEWS.md | 4 bayesdfa-0.1.2/bayesdfa/R/bayesdfa-package.R |only bayesdfa-0.1.2/bayesdfa/R/fit_regimes.R | 4 bayesdfa-0.1.2/bayesdfa/R/invert_chains.R | 14 +- bayesdfa-0.1.2/bayesdfa/R/stanmodels.R | 47 +++----- bayesdfa-0.1.2/bayesdfa/R/trend_cor.R | 3 bayesdfa-0.1.2/bayesdfa/R/zzz.R | 3 bayesdfa-0.1.2/bayesdfa/inst/doc/bayesdfa.R | 1 bayesdfa-0.1.2/bayesdfa/inst/doc/bayesdfa.Rmd | 1 bayesdfa-0.1.2/bayesdfa/inst/doc/bayesdfa.html | 35 +++++- bayesdfa-0.1.2/bayesdfa/inst/include |only bayesdfa-0.1.2/bayesdfa/man/bayesdfa-package.Rd |only bayesdfa-0.1.2/bayesdfa/man/fit_dfa.Rd | 10 - bayesdfa-0.1.2/bayesdfa/man/is_converged.Rd | 4 bayesdfa-0.1.2/bayesdfa/man/plot_loadings.Rd | 4 bayesdfa-0.1.2/bayesdfa/man/sim_dfa.Rd | 4 bayesdfa-0.1.2/bayesdfa/man/trend_cor.Rd | 5 bayesdfa-0.1.2/bayesdfa/src/Makevars | 22 +++- bayesdfa-0.1.2/bayesdfa/src/Makevars.win |only bayesdfa-0.1.2/bayesdfa/src/Modules.cpp | 116 ---------------------- bayesdfa-0.1.2/bayesdfa/src/init.cpp |only bayesdfa-0.1.2/bayesdfa/src/stan_files |only bayesdfa-0.1.2/bayesdfa/tests/testthat/test-fit.R | 41 ++++--- bayesdfa-0.1.2/bayesdfa/tools/make_cc.R |only bayesdfa-0.1.2/bayesdfa/vignettes/bayesdfa.Rmd | 1 33 files changed, 163 insertions(+), 233 deletions(-)
Title: A Computational Tool for Aerobiological Data
Description: Different tools for managing aeriobiological databases, elaborating the main calculations and visualization of results. In a first step, data are checked using tools for quality control and all missing gaps are completed. Then, the main parameters of the pollen season are calculated and represented graphically. Multiple graphical tools are available: pollen calendars, phenological plots, time series, tendencies, interactive plots, abundance plots...
Author: Jesús Rojo <Jesus.Rojo@uclm.es>, Antonio Picornell <picornell@uma.es>, Jose Oteros <OterosJose@gmail.com>
Maintainer: "Jose Oteros" <OterosJose@gmail.com>
Diff between AeRobiology versions 1.0.2 dated 2019-02-20 and 1.0.3 dated 2019-03-05
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- NEWS.md | 10 +++++++++- R/trend_plot.R | 9 +++++---- man/trend_plot.Rd | 2 +- 5 files changed, 25 insertions(+), 16 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-31 0.12.1
2012-08-24 0.12
2012-08-17 0.11
2009-10-11 0.10
2009-04-15 0.09
2008-08-01 0.08
2007-10-22 0.06
2007-10-21 0.04-1
2007-08-25 0.04
Title: Compound Poisson Linear Models
Description: Likelihood-based and Bayesian methods for various compound Poisson linear models based on Zhang, Yanwei (2013) <https://link.springer.com/article/10.1007/s11222-012-9343-7>.
Author: Yanwei (Wayne) Zhang
Maintainer: Yanwei (Wayne) Zhang <actuary_zhang@hotmail.com>
Diff between cplm versions 0.7-7 dated 2018-06-10 and 0.7-8 dated 2019-03-05
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- data/AutoClaim.RData |binary data/ClaimTriangle.RData |binary data/FineRoot.RData |binary src/bcplm.c | 6 +++--- src/cpglmm.c | 5 ++++- src/mh.c | 2 +- 8 files changed, 18 insertions(+), 15 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-19 2.2.1
2018-11-19 2.2.2
2018-05-16 2.0.3
2017-05-04 1.0.6
2017-04-26 1.0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-03-24 0.2.3
2014-02-20 0.2.2
2013-08-18 0.2.1
2013-01-14 0.2.0-2
2010-03-23 0.2.0
2009-10-18 0.1.9
2009-10-12 0.1.7
2009-08-10 0.1.6
2009-05-29 0.1.4-2
2009-05-11 0.1.4-1
2009-05-04 0.1.3
2009-04-16 0.1.2-2
2008-10-30 0.1.1
2008-09-10 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-15 1.1-3
2016-12-06 1.1-0
2016-12-06 1.1-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-09-24 2.1.0
2018-08-14 2.0.0
2018-04-10 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-01 1.3-4
2017-05-07 1.3-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-01-19 1.4.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-11-14 1.3.3.1
2013-04-07 1.3.3