Title: Character String Processing Facilities
Description: Fast, correct, consistent, portable,
as well as convenient character string/text processing in every locale
and any native encoding. Owing to the use of the 'ICU'
(International Components for Unicode) library,
the package provides 'R' users with platform-independent functions
known to 'Java', 'Perl', 'Python', 'PHP', and 'Ruby' programmers. Available
features include: pattern searching (e.g., with 'Java'-like regular
expressions or the 'Unicode' collation algorithm), random string generation,
case mapping, string transliteration, concatenation,
Unicode normalization, date-time formatting and parsing, and many more.
Author: Marek Gagolewski [aut, cre] (<https://orcid.org/0000-0003-0637-6028>),
Bartek Tartanus [ctb],
and other contributors (stringi source code);
IBM, Unicode, Inc., and other contributors (ICU4C source code);
Unicode, Inc. (Unicode Character Database)
Maintainer: Marek Gagolewski <marek@gagolewski.com>
Diff between stringi versions 1.3.1 dated 2019-02-13 and 1.4.3 dated 2019-03-12
stringi-1.3.1/stringi/R/search_replace_na.R |only stringi-1.3.1/stringi/src/stri_search_other_replace.cpp |only stringi-1.4.3/stringi/DESCRIPTION | 11 stringi-1.4.3/stringi/MD5 | 157 +++---- stringi-1.4.3/stringi/NAMESPACE | 9 stringi-1.4.3/stringi/NEWS | 28 + stringi-1.4.3/stringi/R/internal_prepare_arg.R | 13 stringi-1.4.3/stringi/R/join.R | 57 +- stringi-1.4.3/stringi/R/search_count_4.R | 6 stringi-1.4.3/stringi/R/search_detect_4.R | 6 stringi-1.4.3/stringi/R/search_extract_4.R | 6 stringi-1.4.3/stringi/R/search_locate_4.R | 8 stringi-1.4.3/stringi/R/search_locate_bound.R | 2 stringi-1.4.3/stringi/R/search_match_4.R | 6 stringi-1.4.3/stringi/R/search_replace_4.R | 3 stringi-1.4.3/stringi/R/search_split_4.R | 3 stringi-1.4.3/stringi/R/search_startsendswith_4.R | 3 stringi-1.4.3/stringi/R/search_subset_4.R | 3 stringi-1.4.3/stringi/R/sort.R | 89 +++- stringi-1.4.3/stringi/R/sub.R | 266 +++++++++--- stringi-1.4.3/stringi/R/trans_other.R | 8 stringi-1.4.3/stringi/R/utils.R | 93 +++- stringi-1.4.3/stringi/configure | 27 - stringi-1.4.3/stringi/configure.ac |only stringi-1.4.3/stringi/man/oper_comparison.Rd | 2 stringi-1.4.3/stringi/man/oper_plus.Rd | 10 stringi-1.4.3/stringi/man/stri_compare.Rd | 2 stringi-1.4.3/stringi/man/stri_count.Rd | 6 stringi-1.4.3/stringi/man/stri_count_boundaries.Rd | 2 stringi-1.4.3/stringi/man/stri_detect.Rd | 6 stringi-1.4.3/stringi/man/stri_dup.Rd | 5 stringi-1.4.3/stringi/man/stri_duplicated.Rd | 4 stringi-1.4.3/stringi/man/stri_enc_detect2.Rd | 2 stringi-1.4.3/stringi/man/stri_extract.Rd | 6 stringi-1.4.3/stringi/man/stri_extract_boundaries.Rd | 2 stringi-1.4.3/stringi/man/stri_flatten.Rd | 7 stringi-1.4.3/stringi/man/stri_join.Rd | 17 stringi-1.4.3/stringi/man/stri_join_list.Rd | 28 - stringi-1.4.3/stringi/man/stri_list2matrix.Rd | 11 stringi-1.4.3/stringi/man/stri_locate.Rd | 10 stringi-1.4.3/stringi/man/stri_locate_boundaries.Rd | 6 stringi-1.4.3/stringi/man/stri_match.Rd | 6 stringi-1.4.3/stringi/man/stri_na2empty.Rd | 8 stringi-1.4.3/stringi/man/stri_opts_collator.Rd | 2 stringi-1.4.3/stringi/man/stri_order.Rd | 34 - stringi-1.4.3/stringi/man/stri_remove_empty.Rd | 35 + stringi-1.4.3/stringi/man/stri_replace.Rd | 6 stringi-1.4.3/stringi/man/stri_replace_na.Rd | 10 stringi-1.4.3/stringi/man/stri_sort.Rd |only stringi-1.4.3/stringi/man/stri_split.Rd | 3 stringi-1.4.3/stringi/man/stri_split_boundaries.Rd | 2 stringi-1.4.3/stringi/man/stri_startsendswith.Rd | 3 stringi-1.4.3/stringi/man/stri_sub.Rd | 107 +++- stringi-1.4.3/stringi/man/stri_sub_all.Rd |only stringi-1.4.3/stringi/man/stri_subset.Rd | 3 stringi-1.4.3/stringi/man/stri_trans_casemap.Rd | 2 stringi-1.4.3/stringi/man/stri_trans_char.Rd | 8 stringi-1.4.3/stringi/man/stri_trim.Rd | 1 stringi-1.4.3/stringi/man/stri_unique.Rd | 2 stringi-1.4.3/stringi/man/stri_wrap.Rd | 2 stringi-1.4.3/stringi/man/stringi-arguments.Rd | 13 stringi-1.4.3/stringi/man/stringi-locale.Rd | 2 stringi-1.4.3/stringi/man/stringi-search-boundaries.Rd | 2 stringi-1.4.3/stringi/man/stringi-search-coll.Rd | 2 stringi-1.4.3/stringi/man/stringi-search.Rd | 1 stringi-1.4.3/stringi/src/stri_container_listutf8.cpp | 4 stringi-1.4.3/stringi/src/stri_container_listutf8.h | 2 stringi-1.4.3/stringi/src/stri_cpp.txt | 1 stringi-1.4.3/stringi/src/stri_exports.h | 2 stringi-1.4.3/stringi/src/stri_messages.h | 39 - stringi-1.4.3/stringi/src/stri_prepare_arg.cpp | 20 stringi-1.4.3/stringi/src/stri_search_common.cpp | 2 stringi-1.4.3/stringi/src/stri_search_fixed_replace.cpp | 2 stringi-1.4.3/stringi/src/stri_sort.cpp | 4 stringi-1.4.3/stringi/src/stri_string8buf.h | 2 stringi-1.4.3/stringi/src/stri_stringi.cpp | 2 stringi-1.4.3/stringi/src/stri_stringi.h | 1 stringi-1.4.3/stringi/src/stri_sub.cpp | 351 +++++++++++++++- stringi-1.4.3/stringi/src/stri_trans_other.cpp | 93 ++-- stringi-1.4.3/stringi/src/stri_trans_transliterate.cpp | 2 stringi-1.4.3/stringi/src/stri_utils.cpp | 50 ++ stringi-1.4.3/stringi/tools |only 82 files changed, 1343 insertions(+), 418 deletions(-)
Title: R Interface to the 'UNU.RAN' Random Variate Generators
Description: Interface to the 'UNU.RAN' library for Universal Non-Uniform RANdom variate generators.
Thus it allows to build non-uniform random number generators from quite arbitrary
distributions. In particular, it provides an algorithm for fast numerical inversion
for distribution with given density function.
In addition, the package contains densities, distribution functions and quantiles
from a couple of distributions.
Author: Josef Leydold [aut, cre],
Wolfgang H"ormann [aut]
Maintainer: Josef Leydold <josef.leydold@wu.ac.at>
Diff between Runuran versions 0.24 dated 2017-10-25 and 0.26 dated 2019-03-12
DESCRIPTION | 17 MD5 | 712 +++++++-------- NAMESPACE | 2 NEWS | 20 R/Runuran.R | 31 R/options.R |only R/universal.R | 101 ++ R/utils.R |only R/zzz.R | 15 build/vignette.rds |binary inst/doc/Runuran.pdf |binary inst/include/Runuran.h | 26 inst/include/unuran.h | 2 man/Runuran-package.Rd | 6 man/Runuran.options.Rd |only man/arou.new.Rd |only man/tabl.new.Rd |only man/unuran.details.Rd | 4 src/Makevars.in | 2 src/Runuran.c | 217 +++- src/Runuran.h | 26 src/init.c | 37 src/performance.c | 151 +-- src/unuran-src/distr/cemp.c | 2 src/unuran-src/distr/cemp.h | 2 src/unuran-src/distr/condi.c | 2 src/unuran-src/distr/condi.h | 2 src/unuran-src/distr/cont.c | 12 src/unuran-src/distr/cont.h | 2 src/unuran-src/distr/corder.c | 2 src/unuran-src/distr/corder.h | 2 src/unuran-src/distr/cvec.c | 2 src/unuran-src/distr/cvec.h | 2 src/unuran-src/distr/cvemp.c | 2 src/unuran-src/distr/cvemp.h | 2 src/unuran-src/distr/cxtrans.c | 2 src/unuran-src/distr/cxtrans.h | 2 src/unuran-src/distr/deprecated_distr.h | 2 src/unuran-src/distr/discr.c | 2 src/unuran-src/distr/discr.h | 2 src/unuran-src/distr/distr.c | 2 src/unuran-src/distr/distr.h | 2 src/unuran-src/distr/distr_info.c | 2 src/unuran-src/distr/distr_source.h | 3 src/unuran-src/distr/distr_struct.h | 2 src/unuran-src/distr/matr.c | 2 src/unuran-src/distr/matr.h | 2 src/unuran-src/distributions/c_F.c | 2 src/unuran-src/distributions/c_beta.c | 2 src/unuran-src/distributions/c_beta_gen.c | 2 src/unuran-src/distributions/c_burr.c | 2 src/unuran-src/distributions/c_cauchy.c | 2 src/unuran-src/distributions/c_chi.c | 2 src/unuran-src/distributions/c_chi_gen.c | 2 src/unuran-src/distributions/c_chisquare.c | 2 src/unuran-src/distributions/c_exponential.c | 2 src/unuran-src/distributions/c_exponential_gen.c | 2 src/unuran-src/distributions/c_extremeI.c | 2 src/unuran-src/distributions/c_extremeII.c | 2 src/unuran-src/distributions/c_gamma.c | 2 src/unuran-src/distributions/c_gamma_gen.c | 2 src/unuran-src/distributions/c_ghyp.c | 2 src/unuran-src/distributions/c_gig.c | 2 src/unuran-src/distributions/c_gig2.c | 2 src/unuran-src/distributions/c_gig_gen.c | 2 src/unuran-src/distributions/c_hyperbolic.c | 2 src/unuran-src/distributions/c_ig.c | 2 src/unuran-src/distributions/c_laplace.c | 2 src/unuran-src/distributions/c_logistic.c | 2 src/unuran-src/distributions/c_lognormal.c | 2 src/unuran-src/distributions/c_lomax.c | 2 src/unuran-src/distributions/c_meixner.c | 2 src/unuran-src/distributions/c_normal.c | 2 src/unuran-src/distributions/c_normal_gen.c | 2 src/unuran-src/distributions/c_pareto.c | 2 src/unuran-src/distributions/c_powerexponential.c | 2 src/unuran-src/distributions/c_powerexponential_gen.c | 2 src/unuran-src/distributions/c_rayleigh.c | 2 src/unuran-src/distributions/c_slash.c | 2 src/unuran-src/distributions/c_slash_gen.c | 2 src/unuran-src/distributions/c_student.c | 2 src/unuran-src/distributions/c_student_gen.c | 2 src/unuran-src/distributions/c_triangular.c | 2 src/unuran-src/distributions/c_uniform.c | 2 src/unuran-src/distributions/c_vg.c | 2 src/unuran-src/distributions/c_weibull.c | 2 src/unuran-src/distributions/d_binomial.c | 2 src/unuran-src/distributions/d_binomial_gen.c | 2 src/unuran-src/distributions/d_geometric.c | 2 src/unuran-src/distributions/d_hypergeometric.c | 2 src/unuran-src/distributions/d_hypergeometric_gen.c | 2 src/unuran-src/distributions/d_logarithmic.c | 2 src/unuran-src/distributions/d_logarithmic_gen.c | 2 src/unuran-src/distributions/d_negativebinomial.c | 2 src/unuran-src/distributions/d_poisson.c | 2 src/unuran-src/distributions/d_poisson_gen.c | 2 src/unuran-src/distributions/d_zipf.c | 2 src/unuran-src/distributions/d_zipf_gen.c | 2 src/unuran-src/distributions/m_correlation.c | 2 src/unuran-src/distributions/unur_distributions.h | 2 src/unuran-src/distributions/unur_distributions_source.h | 2 src/unuran-src/distributions/unur_stddistr.h | 2 src/unuran-src/distributions/vc_copula.c | 2 src/unuran-src/distributions/vc_multicauchy.c | 2 src/unuran-src/distributions/vc_multiexponential.c | 2 src/unuran-src/distributions/vc_multinormal.c | 2 src/unuran-src/distributions/vc_multinormal_gen.c | 2 src/unuran-src/distributions/vc_multistudent.c | 2 src/unuran-src/methods/arou.c | 2 src/unuran-src/methods/arou.h | 2 src/unuran-src/methods/arou_struct.h | 2 src/unuran-src/methods/ars.c | 2 src/unuran-src/methods/ars.h | 2 src/unuran-src/methods/ars_struct.h | 2 src/unuran-src/methods/auto.c | 2 src/unuran-src/methods/auto.h | 2 src/unuran-src/methods/auto_struct.h | 2 src/unuran-src/methods/cext.c | 2 src/unuran-src/methods/cext.h | 2 src/unuran-src/methods/cext_struct.h | 2 src/unuran-src/methods/cstd.c | 2 src/unuran-src/methods/cstd.h | 2 src/unuran-src/methods/cstd_struct.h | 2 src/unuran-src/methods/dari.c | 2 src/unuran-src/methods/dari.h | 2 src/unuran-src/methods/dari_struct.h | 2 src/unuran-src/methods/dau.c | 2 src/unuran-src/methods/dau.h | 2 src/unuran-src/methods/dau_struct.h | 2 src/unuran-src/methods/deprecated_methods.h | 2 src/unuran-src/methods/deprecated_tdrgw.h | 2 src/unuran-src/methods/deprecated_vmt.h | 2 src/unuran-src/methods/deprecated_vmt_struct.h | 2 src/unuran-src/methods/dext.c | 2 src/unuran-src/methods/dext.h | 2 src/unuran-src/methods/dext_struct.h | 2 src/unuran-src/methods/dgt.c | 2 src/unuran-src/methods/dgt.h | 2 src/unuran-src/methods/dgt_struct.h | 2 src/unuran-src/methods/dsrou.c | 2 src/unuran-src/methods/dsrou.h | 2 src/unuran-src/methods/dsrou_struct.h | 2 src/unuran-src/methods/dss.c | 2 src/unuran-src/methods/dss.h | 2 src/unuran-src/methods/dss_struct.h | 2 src/unuran-src/methods/dstd.c | 2 src/unuran-src/methods/dstd.h | 2 src/unuran-src/methods/dstd_struct.h | 2 src/unuran-src/methods/empk.c | 2 src/unuran-src/methods/empk.h | 2 src/unuran-src/methods/empk_struct.h | 2 src/unuran-src/methods/empl.c | 2 src/unuran-src/methods/empl.h | 2 src/unuran-src/methods/empl_struct.h | 2 src/unuran-src/methods/gibbs.c | 2 src/unuran-src/methods/gibbs.h | 2 src/unuran-src/methods/gibbs_struct.h | 2 src/unuran-src/methods/hinv.c | 2 src/unuran-src/methods/hinv.h | 2 src/unuran-src/methods/hinv_struct.h | 2 src/unuran-src/methods/hist.c | 2 src/unuran-src/methods/hist.h | 2 src/unuran-src/methods/hist_struct.h | 2 src/unuran-src/methods/hitro.c | 2 src/unuran-src/methods/hitro.h | 2 src/unuran-src/methods/hitro_struct.h | 2 src/unuran-src/methods/hrb.c | 2 src/unuran-src/methods/hrb.h | 2 src/unuran-src/methods/hrb_struct.h | 2 src/unuran-src/methods/hrd.c | 2 src/unuran-src/methods/hrd.h | 2 src/unuran-src/methods/hrd_struct.h | 2 src/unuran-src/methods/hri.c | 2 src/unuran-src/methods/hri.h | 2 src/unuran-src/methods/hri_struct.h | 2 src/unuran-src/methods/itdr.c | 2 src/unuran-src/methods/itdr.h | 2 src/unuran-src/methods/itdr_struct.h | 2 src/unuran-src/methods/mcorr.c | 2 src/unuran-src/methods/mcorr.h | 2 src/unuran-src/methods/mcorr_struct.h | 2 src/unuran-src/methods/mixt.c | 2 src/unuran-src/methods/mixt.h | 2 src/unuran-src/methods/mixt_struct.h | 2 src/unuran-src/methods/mvstd.c | 2 src/unuran-src/methods/mvstd.h | 2 src/unuran-src/methods/mvstd_struct.h | 2 src/unuran-src/methods/mvtdr.c | 2 src/unuran-src/methods/mvtdr.h | 2 src/unuran-src/methods/mvtdr_debug.ch | 2 src/unuran-src/methods/mvtdr_info.ch | 2 src/unuran-src/methods/mvtdr_init.ch | 2 src/unuran-src/methods/mvtdr_newset.ch | 2 src/unuran-src/methods/mvtdr_sample.ch | 2 src/unuran-src/methods/mvtdr_struct.h | 2 src/unuran-src/methods/ninv.c | 2 src/unuran-src/methods/ninv.h | 2 src/unuran-src/methods/ninv_debug.ch | 2 src/unuran-src/methods/ninv_info.ch | 2 src/unuran-src/methods/ninv_init.ch | 2 src/unuran-src/methods/ninv_newset.ch | 2 src/unuran-src/methods/ninv_newton.ch | 2 src/unuran-src/methods/ninv_regula.ch | 2 src/unuran-src/methods/ninv_sample.ch | 2 src/unuran-src/methods/ninv_struct.h | 2 src/unuran-src/methods/norta.c | 2 src/unuran-src/methods/norta.h | 2 src/unuran-src/methods/norta_struct.h | 2 src/unuran-src/methods/nrou.c | 2 src/unuran-src/methods/nrou.h | 2 src/unuran-src/methods/nrou_struct.h | 2 src/unuran-src/methods/pinv.c | 2 src/unuran-src/methods/pinv.h | 2 src/unuran-src/methods/pinv_debug.ch | 2 src/unuran-src/methods/pinv_info.ch | 2 src/unuran-src/methods/pinv_init.ch | 2 src/unuran-src/methods/pinv_newset.ch | 2 src/unuran-src/methods/pinv_newton.ch | 2 src/unuran-src/methods/pinv_prep.ch | 2 src/unuran-src/methods/pinv_sample.ch | 2 src/unuran-src/methods/pinv_struct.h | 2 src/unuran-src/methods/srou.c | 2 src/unuran-src/methods/srou.h | 2 src/unuran-src/methods/srou_struct.h | 2 src/unuran-src/methods/ssr.c | 2 src/unuran-src/methods/ssr.h | 2 src/unuran-src/methods/ssr_struct.h | 2 src/unuran-src/methods/tabl.c | 2 src/unuran-src/methods/tabl.h | 2 src/unuran-src/methods/tabl_debug.ch | 2 src/unuran-src/methods/tabl_info.ch | 2 src/unuran-src/methods/tabl_init.ch | 8 src/unuran-src/methods/tabl_newset.ch | 2 src/unuran-src/methods/tabl_sample.ch | 2 src/unuran-src/methods/tabl_struct.h | 2 src/unuran-src/methods/tdr.c | 2 src/unuran-src/methods/tdr.h | 2 src/unuran-src/methods/tdr_debug.ch | 2 src/unuran-src/methods/tdr_gw_debug.ch | 2 src/unuran-src/methods/tdr_gw_init.ch | 2 src/unuran-src/methods/tdr_gw_sample.ch | 2 src/unuran-src/methods/tdr_ia_sample.ch | 2 src/unuran-src/methods/tdr_info.ch | 2 src/unuran-src/methods/tdr_init.ch | 2 src/unuran-src/methods/tdr_newset.ch | 2 src/unuran-src/methods/tdr_ps_debug.ch | 2 src/unuran-src/methods/tdr_ps_init.ch | 2 src/unuran-src/methods/tdr_ps_sample.ch | 2 src/unuran-src/methods/tdr_sample.ch | 2 src/unuran-src/methods/tdr_struct.h | 2 src/unuran-src/methods/unif.c | 2 src/unuran-src/methods/unif.h | 2 src/unuran-src/methods/unif_struct.h | 2 src/unuran-src/methods/unur_methods.h | 2 src/unuran-src/methods/unur_methods_source.h | 2 src/unuran-src/methods/utdr.c | 2 src/unuran-src/methods/utdr.h | 2 src/unuran-src/methods/utdr_struct.h | 2 src/unuran-src/methods/vempk.c | 2 src/unuran-src/methods/vempk.h | 2 src/unuran-src/methods/vempk_struct.h | 2 src/unuran-src/methods/vnrou.c | 2 src/unuran-src/methods/vnrou.h | 2 src/unuran-src/methods/vnrou_struct.h | 2 src/unuran-src/methods/x_gen.c | 2 src/unuran-src/methods/x_gen.h | 2 src/unuran-src/methods/x_gen_source.h | 2 src/unuran-src/methods/x_gen_struct.h | 2 src/unuran-src/parser/functparser.c | 2 src/unuran-src/parser/functparser_debug.ch | 2 src/unuran-src/parser/functparser_deriv.ch | 2 src/unuran-src/parser/functparser_eval.ch | 2 src/unuran-src/parser/functparser_init.ch | 2 src/unuran-src/parser/functparser_parser.ch | 2 src/unuran-src/parser/functparser_scanner.ch | 2 src/unuran-src/parser/functparser_source.h | 2 src/unuran-src/parser/functparser_stringgen.ch | 2 src/unuran-src/parser/functparser_struct.h | 2 src/unuran-src/parser/functparser_symbols.h | 2 src/unuran-src/parser/parser.c | 2 src/unuran-src/parser/parser.h | 2 src/unuran-src/parser/parser_source.h | 2 src/unuran-src/parser/stringparser.c | 2 src/unuran-src/parser/stringparser_lists.ch | 2 src/unuran-src/specfunct/bessel_asympt.c | 2 src/unuran-src/specfunct/cgamma.c | 2 src/unuran-src/specfunct/hypot.c | 2 src/unuran-src/specfunct/log1p.c | 2 src/unuran-src/specfunct/unur_specfunct_source.h | 2 src/unuran-src/tests/countpdf.c | 2 src/unuran-src/tests/counturn.c | 2 src/unuran-src/tests/inverror.c | 2 src/unuran-src/tests/unuran_tests.h | 2 src/unuran-src/uniform/mrg31k3p.c | 2 src/unuran-src/uniform/urng_builtin.h | 2 src/unuran-src/uniform/urng_fvoid.h | 2 src/unuran-src/uniform/urng_gsl.h | 2 src/unuran-src/uniform/urng_gslqrng.h | 2 src/unuran-src/uniform/urng_prng.h | 2 src/unuran-src/uniform/urng_randomshift.h | 2 src/unuran-src/uniform/urng_rngstreams.h | 2 src/unuran-src/unur_cookies.h | 2 src/unuran-src/unur_source.h | 2 src/unuran-src/unur_struct.h | 2 src/unuran-src/unur_typedefs.h | 2 src/unuran-src/unuran.h | 2 src/unuran-src/urng/urng.c | 2 src/unuran-src/urng/urng.h | 2 src/unuran-src/urng/urng_default.c | 2 src/unuran-src/urng/urng_set.c | 2 src/unuran-src/urng/urng_source.h | 2 src/unuran-src/urng/urng_struct.h | 2 src/unuran-src/urng/urng_unuran.c | 2 src/unuran-src/utils/debug.c | 2 src/unuran-src/utils/debug.h | 2 src/unuran-src/utils/debug_source.h | 2 src/unuran-src/utils/eigensystem.c | 2 src/unuran-src/utils/error.c | 2 src/unuran-src/utils/error.h | 2 src/unuran-src/utils/error_source.h | 2 src/unuran-src/utils/fmax.c | 2 src/unuran-src/utils/fmax_source.h | 2 src/unuran-src/utils/hooke.c | 2 src/unuran-src/utils/hooke_source.h | 2 src/unuran-src/utils/lobatto.c | 2 src/unuran-src/utils/lobatto_source.h | 2 src/unuran-src/utils/lobatto_struct.h | 2 src/unuran-src/utils/matrix.c | 2 src/unuran-src/utils/matrix_source.h | 2 src/unuran-src/utils/mrou_rectangle.c | 2 src/unuran-src/utils/mrou_rectangle_source.h | 2 src/unuran-src/utils/mrou_rectangle_struct.h | 2 src/unuran-src/utils/slist.c | 2 src/unuran-src/utils/slist.h | 2 src/unuran-src/utils/slist_struct.h | 2 src/unuran-src/utils/stream.c | 2 src/unuran-src/utils/stream.h | 2 src/unuran-src/utils/stream_source.h | 2 src/unuran-src/utils/string.c | 2 src/unuran-src/utils/string_source.h | 2 src/unuran-src/utils/string_struct.h | 2 src/unuran-src/utils/umalloc.c | 2 src/unuran-src/utils/umalloc_source.h | 2 src/unuran-src/utils/umath.c | 2 src/unuran-src/utils/umath.h | 2 src/unuran-src/utils/umath_source.h | 2 src/unuran-src/utils/unur_errno.h | 2 src/unuran-src/utils/unur_fp.c | 2 src/unuran-src/utils/unur_fp_const_source.h | 2 src/unuran-src/utils/unur_fp_source.h | 2 src/unuran-src/utils/unur_math_source.h | 2 src/unuran-src/utils/vector.c | 2 src/unuran-src/utils/vector_source.h | 2 src/verify.c | 9 tests/test-all.R |only tests/test_details.R |only tests/test_details.Rout.save |only tests/test_universal.R | 77 + tests/test_unuran.R | 4 tests/testthat |only vignettes/inputs/version.tex | 2 361 files changed, 1278 insertions(+), 860 deletions(-)
Title: R Interface to 'FishBase'
Description: A programmatic interface to <http://www.fishbase.org>, re-written
based on an accompanying 'RESTful' API. Access tables describing over 30,000
species of fish, their biology, ecology, morphology, and more. This package also
supports experimental access to <http://www.sealifebase.org> data, which contains
nearly 200,000 species records for all types of aquatic life not covered by
'FishBase.'
Author: Carl Boettiger [cre, aut] (<https://orcid.org/0000-0002-1642-628X>),
Scott Chamberlain [aut] (<https://orcid.org/0000-0003-1444-9135>),
Duncan Temple Lang [aut],
Peter Wainwright [aut]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between rfishbase versions 3.0.1 dated 2019-03-02 and 3.0.3 dated 2019-03-12
DESCRIPTION | 8 ++++---- MD5 | 18 ++++++++++-------- NAMESPACE | 4 ++++ NEWS.md | 16 ++++++++++++---- R/00-endpoint.R | 4 +++- R/fb_tbl.R | 8 +++++--- R/trophic_ecology.R | 11 +++++++++++ README.md | 26 +++++++++++++------------- inst/doc/tutorial.html | 30 +++++++++++++++--------------- man/diet_items.Rd |only tests/testthat/test_trophic_ecology.R |only 11 files changed, 77 insertions(+), 48 deletions(-)
Title: Measuring Information Flow Between Time Series with Shannon and
Renyi Transfer Entropy
Description: Measuring information flow between time series with Shannon and Rényi transfer entropy. See also Dimpfl and Peter (2013) <doi:10.1515/snde-2012-0044> and Dimpfl and Peter (2014) <doi:10.1016/j.intfin.2014.03.004> for theory and applications to financial time series. Additional references can be found in the theory part of the vignette.
Author: Simon Behrendt [aut, cre],
David Zimmermann [aut],
Thomas Dimpfl [aut],
Franziska Peter [aut]
Maintainer: Simon Behrendt <simon.behrendt@zu.de>
Diff between RTransferEntropy versions 0.2.7 dated 2018-09-21 and 0.2.8 dated 2019-03-12
DESCRIPTION | 8 MD5 | 14 build/vignette.rds |binary inst/doc/transfer-entropy.R | 17 - inst/doc/transfer-entropy.Rmd | 15 inst/doc/transfer-entropy.html | 644 +++++++++++++++++++++-------------------- tests/testthat.R | 3 vignettes/transfer-entropy.Rmd | 15 8 files changed, 389 insertions(+), 327 deletions(-)
More information about RTransferEntropy at CRAN
Permanent link
Title: Data on Base Packages for Current and Previous Versions of R
Description: Provides a dataset of functions in all base packages of R versions 1.0.1 onwards.
Author: David Hugh-Jones [aut, cre]
Maintainer: David Hugh-Jones <davidhughjones@gmail.com>
Diff between rcheology versions 3.5.2.0 dated 2019-01-02 and 3.5.3.0 dated 2019-03-12
DESCRIPTION | 6 ++--- MD5 | 15 ++++++------ NEWS.md | 5 ++++ README.md | 37 ++++++++++++++++++++++--------- data/Rversions.rda |binary data/rcheology.rda |binary man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |only 9 files changed, 43 insertions(+), 20 deletions(-)
Title: Extensible, Parallelizable Implementation of the Random Forest
Algorithm
Description: Scalable decision tree training and prediction.
Author: Mark Seligman
Maintainer: Mark Seligman <mseligman@suiji.org>
Diff between Rborist versions 0.1-13 dated 2019-03-11 and 0.1-14 dated 2019-03-12
DESCRIPTION | 10 ++-- MD5 | 76 ++++++++++++++++---------------- R/Rborist.default.R | 2 R/Streamline.R | 2 R/Streamline.default.R | 7 +-- man/Streamline.Rd | 12 ++--- src/bagBridge.cc | 16 +++--- src/bottom.cc | 6 +- src/bv.cc | 21 --------- src/bv.h | 113 ------------------------------------------------- src/callback.cc | 4 - src/coproc.h | 6 ++ src/forest.cc | 3 - src/forest.h | 1 src/forestBridge.cc | 4 - src/framemapBridge.cc | 10 ++-- src/index.cc | 8 +-- src/jagged.h | 11 ++++ src/leaf.cc | 27 +---------- src/leaf.h | 24 +++++----- src/leafBridge.cc | 32 +++++-------- src/leafBridge.h | 13 ++++- src/level.h | 2 src/ompthread.cc | 12 ++++- src/ompthread.h | 1 src/predict.cc | 66 ++++++++++++---------------- src/predict.h | 75 ++++++++++---------------------- src/predictBridge.cc | 41 ++++++++++------- src/predictBridge.h | 4 + src/quant.cc | 28 ++++++------ src/quant.h | 14 +++++- src/rowrank.cc | 2 src/runset.cc | 18 +++---- src/sample.cc | 6 +- src/samplepred.cc | 2 src/splitnode.cc | 20 ++++---- src/train.cc | 2 src/trainBridge.cc | 2 src/trainBridge.h | 4 - 39 files changed, 281 insertions(+), 426 deletions(-)
Title: Tools for Easier Analysis of Meteorological Fields
Description: Many useful functions and extensions for dealing
with meteorological data in the tidy data framework. Extends 'ggplot2'
for better plotting of scalar and vector fields and provides commonly
used analysis methods in the atmospheric sciences.
Author: Elio Campitelli [cre, aut] (<https://orcid.org/0000-0002-7742-9230>)
Maintainer: Elio Campitelli <elio.campitelli@cima.fcen.uba.ar>
Diff between metR versions 0.2.0 dated 2018-11-19 and 0.3.0 dated 2019-03-12
metR-0.2.0/metR/tests/figs |only metR-0.3.0/metR/DESCRIPTION | 20 metR-0.3.0/metR/MD5 | 87 +--- metR-0.3.0/metR/NAMESPACE | 1 metR-0.3.0/metR/NEWS.md | 22 + metR-0.3.0/metR/R/IdealGas.R | 14 metR-0.3.0/metR/R/ReadNetCDF.R | 4 metR-0.3.0/metR/R/Tajectory.R | 66 ++- metR-0.3.0/metR/R/geom_arrow.R | 58 +- metR-0.3.0/metR/R/geom_contour_fill.R | 9 metR-0.3.0/metR/R/small_funs.R | 7 metR-0.3.0/metR/README.md | 71 +-- metR-0.3.0/metR/build/vignette.rds |binary metR-0.3.0/metR/inst/doc/Visualization-tools.R | 9 metR-0.3.0/metR/inst/doc/Visualization-tools.Rmd | 9 metR-0.3.0/metR/inst/doc/Visualization-tools.html | 322 +++++++-------- metR-0.3.0/metR/inst/doc/Working-with-data.R | 7 metR-0.3.0/metR/inst/doc/Working-with-data.Rmd | 7 metR-0.3.0/metR/inst/doc/Working-with-data.html | 363 ++++++++--------- metR-0.3.0/metR/man/Anomaly.Rd | 5 metR-0.3.0/metR/man/Trajectory.Rd |only metR-0.3.0/metR/man/figures/field-1.png |binary metR-0.3.0/metR/man/figures/timeseries-1.png |binary metR-0.3.0/metR/man/geom_contour2.Rd | 8 metR-0.3.0/metR/man/geom_contour_fill.Rd | 8 metR-0.3.0/metR/man/scale_divergent.Rd | 5 metR-0.3.0/metR/man/scale_longitude.Rd | 5 metR-0.3.0/metR/man/thermodynamics.Rd | 6 metR-0.3.0/metR/tests/testthat/test_contour2.R | 28 - metR-0.3.0/metR/tests/testthat/test_contour_fill.R | 16 metR-0.3.0/metR/tests/testthat/test_eof.R | 12 metR-0.3.0/metR/tests/testthat/test_guide_colorstrip.R | 22 - metR-0.3.0/metR/tests/testthat/test_streamline.R | 8 metR-0.3.0/metR/tests/testthat/test_text_contour.R | 24 - metR-0.3.0/metR/vignettes/Visualization-tools.Rmd | 9 metR-0.3.0/metR/vignettes/Working-with-data.Rmd | 7 36 files changed, 661 insertions(+), 578 deletions(-)
Title: Graceful 'ggplot'-Based Graphics and Other Functions for GAMs
Fitted Using 'mgcv'
Description: Graceful 'ggplot'-based graphics and utility functions for working with generalized additive models (GAMs) fitted using the 'mgcv' package. Provides a reimplementation of the plot() method for GAMs that 'mgcv' provides, as well as 'tidyverse' compatible representations of estimated smooths.
Author: Gavin L. Simpson [aut, cre] (<https://orcid.org/0000-0002-9084-8413>)
Maintainer: Gavin L. Simpson <ucfagls@gmail.com>
Diff between gratia versions 0.2-1 dated 2019-02-01 and 0.2-8 dated 2019-03-12
DESCRIPTION | 8 MD5 | 184 R/confint-methods.R | 16 R/datagen-methods.R | 2 R/derivatives.R | 2 R/diagnose.R | 4 R/draw-methods.R | 135 R/evaluate_smooth.R | 5 R/fderiv.R | 2 R/simulate-methods.R | 2 R/utililties.R | 34 man/check_user_select_smooths.Rd |only man/confint.fderiv.Rd | 2 man/confint.gam.Rd | 2 man/datagen.Rd | 2 man/derivatives.Rd | 2 man/draw.derivatives.Rd | 2 man/draw.evaluated_smooth.Rd | 18 man/draw.gam.Rd | 24 man/evaluate_smooth.Rd | 2 man/fderiv.Rd | 2 man/fix_offset.Rd | 2 man/is_offset.Rd | 2 man/qq_plot.Rd | 2 man/simulate.Rd | 2 tests/Examples/gratia-Ex.Rout.save | 84 tests/figs/deps.txt | 9 tests/figs/diagnostic-plots/appraise-diagnostic-plots.svg | 2790 +- tests/figs/draw-methods/draw-1d-smooth-for-selected-smooth-with-overall-uncertainty-false.svg | 62 tests/figs/draw-methods/draw-1d-smooth-for-selected-smooth.svg | 62 tests/figs/draw-methods/draw-2d-smooth.svg | 150 tests/figs/draw-methods/draw-am-with-2d-smooth.svg | 150 tests/figs/draw-methods/draw-am-with-continuous-by-var-fixed-scale.svg | 482 tests/figs/draw-methods/draw-am-with-continuous-by-variable-smooth.svg | 482 tests/figs/draw-methods/draw-am-with-factor-by-variable-smooth-with-fixed-scales.svg | 2098 +- tests/figs/draw-methods/draw-am-with-factor-by-variable-smooth.svg | 2082 +- tests/figs/draw-methods/draw-derivatives-for-a-gam-with-fixed-scales.svg | 366 tests/figs/draw-methods/draw-derivatives-for-a-gam.svg | 366 tests/figs/draw-methods/draw-evaluated-fs-smooth.svg | 106 tests/figs/draw-methods/draw-evaluated-parametric-term-with-linear-parametric-term.svg | 448 tests/figs/draw-methods/draw-evaluated-re-smooth-with-factor-by.svg | 186 tests/figs/draw-methods/draw-evaluated-re-smooth.svg | 92 tests/figs/draw-methods/draw-evaulated-2d-smooth-standard-errors.svg | 210 tests/figs/draw-methods/draw-gam-model-with-fs-smooth-fixed-scales.svg | 1818 + tests/figs/draw-methods/draw-gam-model-with-fs-smooth.svg | 1816 + tests/figs/draw-methods/draw-gam-model-with-non-standard-names.svg | 142 tests/figs/draw-methods/draw-gam-model-with-ranef-smooth-factor-by-fixed-scales.svg | 2016 +- tests/figs/draw-methods/draw-gam-model-with-ranef-smooth-factor-by.svg | 2006 +- tests/figs/draw-methods/draw-gam-model-with-ranef-smooth-fixed-scales.svg | 2180 ++ tests/figs/draw-methods/draw-gam-model-with-ranef-smooth.svg | 2104 +- tests/figs/draw-methods/draw-gam-smooth-for-selected-smooth-character.svg | 482 tests/figs/draw-methods/draw-gam-smooth-for-selected-smooth-logical.svg | 488 tests/figs/draw-methods/draw-gam-smooth-for-selected-smooth-numeric.svg | 482 tests/figs/draw-methods/draw-gam-smooth-for-two-selected-smooths-character.svg | 958 - tests/figs/draw-methods/draw-gam-smooth-for-two-selected-smooths-logical.svg | 980 - tests/figs/draw-methods/draw-gam-smooth-for-two-selected-smooths-numeric.svg | 980 - tests/figs/draw-methods/draw-gam-with-factor-parametric-term.svg | 986 - tests/figs/draw-methods/draw-gam-with-linear-parametric-term.svg | 1348 + tests/figs/draw-methods/draw-gam-with-overall-uncertainty-false.svg | 1980 +- tests/figs/draw-methods/draw-gam-with-partial-match-true.svg |only tests/figs/draw-methods/draw-gam-with-select-and-parametric-is-false.svg |only tests/figs/draw-methods/draw-gam-with-select-and-parametric-is-null.svg |only tests/figs/draw-methods/draw-gam-with-select-and-parametric-is-true.svg |only tests/figs/draw-methods/draw-gam-without-select-and-parametric-is-false.svg |only tests/figs/draw-methods/draw-gam-without-select-and-parametric-is-true.svg |only tests/figs/draw-methods/draw-simple-multi-smooth-am-with-fixed-scales.svg | 2002 +- tests/figs/draw-methods/draw-simple-multi-smooth-am.svg | 1974 +- tests/figs/draw-methods/draw-std-error-of-2d-smooth.svg | 210 tests/figs/qq-plot-methods/qq-plot-data-simulation-pearson-residuals.svg | 456 tests/figs/qq-plot-methods/qq-plot-data-simulation-response-residuals.svg | 456 tests/figs/qq-plot-methods/qq-plot-data-simulation.svg | 468 tests/figs/qq-plot-methods/qq-plot-direct-randomisation-pearson-residuals.svg | 450 tests/figs/qq-plot-methods/qq-plot-direct-randomisation-response-residuals.svg | 446 tests/figs/qq-plot-methods/qq-plot-direct-randomisation.svg | 462 tests/figs/qq-plot-methods/qq-plot-normality-assumption-pearson-residuals.svg | 466 tests/figs/qq-plot-methods/qq-plot-normality-assumption-response-residuals.svg | 462 tests/figs/qq-plot-methods/qq-plot-normality-assumption.svg | 470 tests/figs/test-by-variables/continuous-by-variable-smmoth.svg | 490 tests/figs/test-by-variables/draw-gam-user-select-and-parametric-true.svg |only tests/figs/test-hgam-paper-models/hgam-paper-bird-move-model-1.svg | 164 tests/figs/test-hgam-paper-models/hgam-paper-bird-move-model-2.svg | 170 tests/figs/test-hgam-paper-models/hgam-paper-bird-move-model-3.svg | 1354 - tests/figs/test-hgam-paper-models/hgam-paper-bird-move-model-5.svg | 1240 - tests/figs/test-hgam-paper-models/hgam-paper-co2-model-1.svg | 300 tests/figs/test-hgam-paper-models/hgam-paper-co2-model-2.svg | 380 tests/figs/test-hgam-paper-models/hgam-paper-co2-model-3.svg | 2788 ++ tests/figs/test-hgam-paper-models/hgam-paper-co2-model-4.svg | 202 tests/figs/test-hgam-paper-models/hgam-paper-co2-model-5.svg | 2498 +- tests/figs/test-hgam-paper-models/hgam-paper-zoop-model-4.svg | 1507 + tests/figs/test-hgam-paper-models/hgam-paper-zoop-model-5.svg | 9354 +++++++++- tests/testthat/test-by-variables.R | 6 tests/testthat/test-derivatives.R | 1 tests/testthat/test-diagnostic-plots.R | 1 tests/testthat/test-draw-methods.R | 45 tests/testthat/test-evaluate-smooth-methods.R | 6 tests/testthat/test-hgam-paper.R | 4 tests/testthat/test-qq-plot.R | 1 97 files changed, 47273 insertions(+), 13009 deletions(-)
Title: Interpreted String Literals
Description: An implementation of interpreted string literals, inspired by
Python's Literal String Interpolation <https://www.python.org/dev/peps/pep-0498/> and Docstrings
<https://www.python.org/dev/peps/pep-0257/> and Julia's Triple-Quoted String Literals
<https://docs.julialang.org/en/stable/manual/strings/#triple-quoted-string-literals>.
Author: Jim Hester [aut, cre]
Maintainer: Jim Hester <james.f.hester@gmail.com>
Diff between glue versions 1.3.0 dated 2018-07-17 and 1.3.1 dated 2019-03-12
DESCRIPTION | 8 ++-- MD5 | 41 ++++++++++++------------ NAMESPACE | 1 NEWS.md | 16 +++++++++ R/glue.R | 35 ++++++++++++++++++-- R/sql.R | 24 ++++++++++++-- R/utils.R | 2 - README.md | 41 ++++++++++++++---------- build/vignette.rds |binary inst/doc/speed.R | 76 ++++++++++++++++++++++----------------------- inst/doc/speed.html | 49 ++++++++++++++++++++++++++--- inst/doc/transformers.Rmd | 2 - inst/doc/transformers.html | 37 ++++++++++++++++++--- man/figures/logo.png |binary man/glue.Rd | 5 +- man/glue_collapse.Rd | 2 - man/glue_sql.Rd | 10 ++++- src/glue.c | 5 ++ tests/testthat/test-glue.R | 16 +++++++++ tests/testthat/test-sql.R | 21 ++++++++++++ vignettes/crayon.html |only vignettes/transformers.Rmd | 2 - 22 files changed, 288 insertions(+), 105 deletions(-)
Title: Compositional Data Analysis
Description: Regression, classification, contour plots, hypothesis testing and fitting of distributions for compositional data are some of the functions included. The standard textbook for such data is John Aitchison's (1986) "The statistical analysis of compositional data". Relevant papers include a) Tsagris M.T., Preston S. and Wood A.T.A. (2011) A data-based power transformation for compositional data. Fourth International International Workshop on Compositional Data Analysis. b) Tsagris M. (2014). The k-NN algorithm for compositional data: a revised approach with and without zero values present. Journal of Data Science, 12(3):519--534. c) Tsagris M. (2015). Regression analysis with compositional data containing zero values. Chilean Journal of Statistics, 6(2):47--57. d) Tsagris M., Preston S. and Wood A.T.A. (2016). Improved supervised classification for compositional data using the alpha-transformation. Journal of Classification, 33(2):243--261. e) Tsagris M., Preston S. and Wood A.T.A. (2017). Nonparametric hypothesis testing for equality of means on the simplex. Journal of Statistical Computation and Simulation, 87(2): 406--422. f) Tsagris M. and Stewart C. (2018). A Dirichlet regression model for compositional data with zeros. Lobachevskii Journal of Mathematics, 39(3): 398--412. Furher, we include functions for percentages (or proportions).
Author: Michail Tsagris [aut, cre],
Giorgos Athineou [aut],
Abdulaziz Alenazi [ctb]
Maintainer: Michail Tsagris <mtsagris@yahoo.gr>
Diff between Compositional versions 3.3 dated 2019-01-13 and 3.4 dated 2019-03-12
DESCRIPTION | 10 +++++----- MD5 | 18 ++++++++++++++---- NAMESPACE | 5 +++-- R/beta.est.R |only R/comp.ppr.R |only R/hsecant01.est.R |only R/ibeta.est.R |only R/logitnorm.est.R |only R/propreg.R |only R/propregs.R |only man/Compositional-package.Rd | 4 ++-- man/beta.est.Rd |only man/comp.ppr.Rd |only man/comp.reg.Rd | 7 +++---- man/propreg.Rd |only 15 files changed, 27 insertions(+), 17 deletions(-)
Title: Circos 2D Track Plot
Description: A simple and flexible way to generate Circos 2D track plot images for genomic data visualization is implemented in this package. The types of plots include: heatmap, histogram, lines, scatterplot, tiles and plot items for further decorations include connector, link (lines and ribbons), and text (gene) label. All functions require only R graphics package that comes with R base installation.
Author: Hongen Zhang
Maintainer: Hongen Zhang <hzhang.henry@gmail.com>
Diff between RCircos versions 1.2.0 dated 2016-09-28 and 1.2.1 dated 2019-03-12
DESCRIPTION | 8 - MD5 | 59 ++++++------- NAMESPACE | 10 +- R/RCircosChromosomeIdeogram.R | 11 +- R/RCircosPlotDataTracks.R | 103 ++++++++++++++++++------ R/RCircosPlotPositions.R | 10 +- build/vignette.rds |binary data/RCircos.Gene.Label.Data.RData |binary data/RCircos.Heatmap.Data.RData |binary data/RCircos.Histogram.Data.RData |binary data/RCircos.Line.Data.RData |binary data/RCircos.Link.Data.RData |binary data/RCircos.Mouse.Expr.Data.RData |binary data/RCircos.Polygon.Data.RData |binary data/RCircos.Rat.Expr.Data.RData |binary data/RCircos.Ribbon.Data.RData |binary data/RCircos.Scatter.Data.RData |binary data/RCircos.Tile.Data.RData |binary data/UCSC.Baylor.3.4.Rat.cytoBandIdeogram.RData |binary data/UCSC.HG19.Human.CytoBandIdeogram.RData |binary data/UCSC.HG38.Human.CytoBandIdeogram.RData |binary data/UCSC.Mouse.GRCm38.CytoBandIdeogram.RData |binary demo/RCircos.Demo.Human.R | 1 demo/RCircos.Scatter.Plot.Demo.R | 3 demo/RCircos.Zoom.Plot.Demo.R | 11 -- inst/doc/RCircos-manual.pdf |binary inst/doc/Using_RCircos.pdf |binary man/RCircos.Area.Plot.Rd | 3 man/RCircos.Customized.Connection.Plot.Rd |only man/RCircos.Gene.Name.Plot.Rd | 1 man/RCircos.Reset.Core.Components.Rd | 8 - 31 files changed, 136 insertions(+), 92 deletions(-)
Title: Analyze Paleontological Time-Series
Description: Facilitates analysis of paleontological sequences of trait values.
Functions are provided to fit, using maximum likelihood, simple
evolutionary models (including unbiased random walks, directional
evolution,stasis, Ornstein-Uhlenbeck, covariate-tracking) and
complex models (punctuation, mode shifts).
Author: Gene Hunt [aut, cre]
Maintainer: Gene Hunt <hunte@si.edu>
Diff between paleoTS versions 0.5-1 dated 2015-12-01 and 0.5.2 dated 2019-03-12
paleoTS-0.5-1/paleoTS/R/paleoTS_0.5-1.R |only paleoTS-0.5-1/paleoTS/data/pelvic.score.rda |only paleoTS-0.5-1/paleoTS/data/pterygiophores.rda |only paleoTS-0.5-1/paleoTS/man/cat.paleoTS.Rd |only paleoTS-0.5-1/paleoTS/man/logL.GRW.Rd |only paleoTS-0.5-1/paleoTS/man/logL.joint.GRW.Rd |only paleoTS-0.5-1/paleoTS/man/modelCurves.Rd |only paleoTS-0.5-1/paleoTS/man/paleoTS-package.Rd |only paleoTS-0.5-1/paleoTS/man/stickleback.Rd |only paleoTS-0.5.2/paleoTS/DESCRIPTION | 29 +++-- paleoTS-0.5.2/paleoTS/MD5 | 97 +++++++++++------- paleoTS-0.5.2/paleoTS/NAMESPACE | 73 ++++++++++++-- paleoTS-0.5.2/paleoTS/NEWS.md |only paleoTS-0.5.2/paleoTS/R/basics.R |only paleoTS-0.5.2/paleoTS/R/complexModels.R |only paleoTS-0.5.2/paleoTS/R/data.R |only paleoTS-0.5.2/paleoTS/R/multModels.R |only paleoTS-0.5.2/paleoTS/R/plotting.R |only paleoTS-0.5.2/paleoTS/R/rates.R |only paleoTS-0.5.2/paleoTS/R/simpleModels.R |only paleoTS-0.5.2/paleoTS/README.md |only paleoTS-0.5.2/paleoTS/build |only paleoTS-0.5.2/paleoTS/data/cantius_L.rda |only paleoTS-0.5.2/paleoTS/data/dorsal.spines.rda |binary paleoTS-0.5.2/paleoTS/inst |only paleoTS-0.5.2/paleoTS/man/ESD.Rd | 80 +++++++-------- paleoTS-0.5.2/paleoTS/man/IC.Rd | 51 +++------ paleoTS-0.5.2/paleoTS/man/LRI.Rd | 88 +++++++---------- paleoTS-0.5.2/paleoTS/man/as.paleoTS.Rd | 105 +++++++++----------- paleoTS-0.5.2/paleoTS/man/as.paleoTSfit.Rd | 69 ++++--------- paleoTS-0.5.2/paleoTS/man/bootSimpleComplex.Rd | 113 ++++++++++++---------- paleoTS-0.5.2/paleoTS/man/cantius_L.Rd |only paleoTS-0.5.2/paleoTS/man/compareModels.Rd | 62 +++--------- paleoTS-0.5.2/paleoTS/man/dorsal.spines.Rd |only paleoTS-0.5.2/paleoTS/man/fit.sgs.Rd | 102 ++++++------------- paleoTS-0.5.2/paleoTS/man/fit3models.Rd | 83 +++++----------- paleoTS-0.5.2/paleoTS/man/fit9models.Rd |only paleoTS-0.5.2/paleoTS/man/fitGpunc.Rd | 124 ++++++++---------------- paleoTS-0.5.2/paleoTS/man/fitModeShift.Rd | 103 ++++++-------------- paleoTS-0.5.2/paleoTS/man/fitMult.Rd | 121 ++++++++++------------- paleoTS-0.5.2/paleoTS/man/fitSimple.Rd | 127 +++++++++++++++--------- paleoTS-0.5.2/paleoTS/man/ln.paleoTS.Rd | 54 +++++----- paleoTS-0.5.2/paleoTS/man/lynchD.Rd | 79 +++++++-------- paleoTS-0.5.2/paleoTS/man/mle.GRW.Rd | 52 +++++----- paleoTS-0.5.2/paleoTS/man/opt.GRW.Rd | 96 ++++++++++-------- paleoTS-0.5.2/paleoTS/man/opt.GRW.shift.Rd | 88 +++++++++-------- paleoTS-0.5.2/paleoTS/man/opt.covTrack.Rd | 128 +++++++++++-------------- paleoTS-0.5.2/paleoTS/man/opt.joint.GRW.Rd | 120 +++++++++-------------- paleoTS-0.5.2/paleoTS/man/opt.joint.OU.Rd |only paleoTS-0.5.2/paleoTS/man/opt.punc.Rd |only paleoTS-0.5.2/paleoTS/man/plot.paleoTS.Rd | 62 +++++------- paleoTS-0.5.2/paleoTS/man/pool.var.Rd |only paleoTS-0.5.2/paleoTS/man/read.paleoTS.Rd |only paleoTS-0.5.2/paleoTS/man/sim.GRW.Rd | 81 +++++++-------- paleoTS-0.5.2/paleoTS/man/sim.GRW.shift.Rd |only paleoTS-0.5.2/paleoTS/man/sim.OU.Rd | 90 ++++++++--------- paleoTS-0.5.2/paleoTS/man/sim.Stasis.RW.Rd |only paleoTS-0.5.2/paleoTS/man/sim.Stasis.Rd |only paleoTS-0.5.2/paleoTS/man/sim.covTrack.Rd | 83 ++++++++-------- paleoTS-0.5.2/paleoTS/man/sim.punc.Rd | 86 ++++++---------- paleoTS-0.5.2/paleoTS/man/sim.sgs.Rd |only paleoTS-0.5.2/paleoTS/man/std.paleoTS.Rd | 54 +++++----- paleoTS-0.5.2/paleoTS/man/sub.paleoTS.Rd | 54 ++++------ paleoTS-0.5.2/paleoTS/man/test.var.het.Rd | 62 ++++-------- paleoTS-0.5.2/paleoTS/vignettes |only 65 files changed, 1240 insertions(+), 1376 deletions(-)
Title: An Algorithm for Gene Co-Expression Analysis
Description: Implementation based on Zhang, Jie & Huang, Kun (2014) <doi:10.4137/CIN.S14021> Normalized ImQCM: An Algorithm for Detecting Weak Quasi-Cliques in Weighted Graph with Applications in Gene Co-Expression Module Discovery in Cancers. Cancer informatics, 13, CIN-S14021.
Author: Zhi Huang [aut, cre],
Jie Zhang [aut, ctb],
Kun Huang [aut, ctb],
Zhi Han [aut, ctb]
Maintainer: Zhi Huang <huang898@purdue.edu>
Diff between lmQCM versions 0.2.0 dated 2019-02-20 and 0.2.1 dated 2019-03-12
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NAMESPACE | 2 +- R/fastFilter.R | 16 +++++++++------- R/lmQCM.R | 1 - R/localMaximumQCM.R | 32 ++++++++++++++++++++++---------- R/merging_lmQCM.R | 6 +++--- R/zzz.R | 15 +++++++-------- man/fastFilter.Rd | 4 +++- 9 files changed, 58 insertions(+), 44 deletions(-)
Title: Easy Plotting of Periodic Data with 'ggplot2'
Description: Implements methods to plot periodic data in any arbitrary range on the fly.
Author: Elio Campitelli [cre, aut] (<https://orcid.org/0000-0002-7742-9230>)
Maintainer: Elio Campitelli <elio.campitelli@cima.fcen.uba.ar>
Diff between ggperiodic versions 0.1.0 dated 2018-08-31 and 1.0.0 dated 2019-03-12
DESCRIPTION | 17 ++-- MD5 | 35 ++++----- NAMESPACE | 5 + NEWS.md | 17 ++++ R/ggperiodic.R | 2 R/periodic.R | 42 +++++++++- R/qwrap.R |only R/unperiodic.R | 39 ++++++++-- R/utils.R | 15 +++ R/wrap.R | 17 ++-- README.md | 8 +- build/vignette.rds |binary inst/doc/wraping-around-ggplot2.html | 120 +++++++++++++++++-------------- man/ggperiodic.Rd | 2 man/periodic.Rd | 15 ++- man/qwrap.Rd |only man/unperiodic.Rd | 12 +++ man/wrap.Rd | 4 + tests/testthat/test-data-table-support.R |only tests/testthat/test-periodic.R | 25 +++--- 20 files changed, 259 insertions(+), 116 deletions(-)
Title: Helper Functions to Install and Maintain 'TeX Live', and Compile
'LaTeX' Documents
Description: Helper functions to install and maintain the 'LaTeX' distribution
named 'TinyTeX' (<https://yihui.name/tinytex/>), a lightweight, cross-platform,
portable, and easy-to-maintain version of 'TeX Live'. This package also
contains helper functions to compile 'LaTeX' documents, and install missing
'LaTeX' packages automatically.
Author: Yihui Xie [aut, cre, cph] (<https://orcid.org/0000-0003-0645-5666>),
RStudio, Inc. [cph],
Fernando Cagua [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between tinytex versions 0.10 dated 2019-01-10 and 0.11 dated 2019-03-12
DESCRIPTION | 8 ++-- LICENSE | 2 - MD5 | 16 ++++---- NAMESPACE | 2 - R/install.R | 62 +++++++++++++++++--------------- R/latex.R | 110 ++++++++++++++++++++++++++++++++++++++++++--------------- R/tlmgr.R | 8 ++-- README.md | 2 + man/latexmk.Rd | 19 +++++---- 9 files changed, 146 insertions(+), 83 deletions(-)
Title: Data and Variable Transformation Functions
Description: Collection of miscellaneous utility functions, supporting data
transformation tasks like recoding, dichotomizing or grouping variables,
setting and replacing missing values. The data transformation functions
also support labelled data, and all integrate seamlessly into a
'tidyverse'-workflow.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjmisc versions 2.7.7 dated 2019-01-02 and 2.7.8 dated 2019-03-12
sjmisc-2.7.7/sjmisc/man/set_na.Rd |only sjmisc-2.7.7/sjmisc/man/str_pos.Rd |only sjmisc-2.7.8/sjmisc/DESCRIPTION | 15 sjmisc-2.7.8/sjmisc/MD5 | 131 +- sjmisc-2.7.8/sjmisc/NAMESPACE | 26 sjmisc-2.7.8/sjmisc/NEWS.md | 24 sjmisc-2.7.8/sjmisc/R/S3-methods.R | 30 sjmisc-2.7.8/sjmisc/R/add_cases.R | 1 sjmisc-2.7.8/sjmisc/R/colour_tools.R |only sjmisc-2.7.8/sjmisc/R/descr.R | 10 sjmisc-2.7.8/sjmisc/R/dicho.R | 1 sjmisc-2.7.8/sjmisc/R/find_var.R | 77 - sjmisc-2.7.8/sjmisc/R/frq.R | 28 sjmisc-2.7.8/sjmisc/R/group_str.R | 95 + sjmisc-2.7.8/sjmisc/R/helpfunctions.R | 5 sjmisc-2.7.8/sjmisc/R/is_empty.R | 13 sjmisc-2.7.8/sjmisc/R/is_float.R | 2 sjmisc-2.7.8/sjmisc/R/merge_imputations.R | 24 sjmisc-2.7.8/sjmisc/R/prop_table.R | 3 sjmisc-2.7.8/sjmisc/R/rec.R | 4 sjmisc-2.7.8/sjmisc/R/recode_mids_fun.R | 6 sjmisc-2.7.8/sjmisc/R/recode_to.R | 2 sjmisc-2.7.8/sjmisc/R/replace_na.R | 2 sjmisc-2.7.8/sjmisc/R/reshape_helpers.R |only sjmisc-2.7.8/sjmisc/R/row_sums.R | 5 sjmisc-2.7.8/sjmisc/R/set_na.R | 296 ----- sjmisc-2.7.8/sjmisc/R/split_var.R | 2 sjmisc-2.7.8/sjmisc/R/spread_coef.R | 70 - sjmisc-2.7.8/sjmisc/R/std.R | 2 sjmisc-2.7.8/sjmisc/R/str_pos.R | 140 +- sjmisc-2.7.8/sjmisc/R/str_start_end.R | 52 sjmisc-2.7.8/sjmisc/R/to_label.R | 264 ---- sjmisc-2.7.8/sjmisc/R/to_long.R | 21 sjmisc-2.7.8/sjmisc/R/to_value.R | 145 -- sjmisc-2.7.8/sjmisc/R/typical.R |only sjmisc-2.7.8/sjmisc/R/var_labels.R | 18 sjmisc-2.7.8/sjmisc/README.md | 2 sjmisc-2.7.8/sjmisc/build/partial.rdb |binary sjmisc-2.7.8/sjmisc/build/vignette.rds |binary sjmisc-2.7.8/sjmisc/inst/doc/design_philosophy.Rmd | 2 sjmisc-2.7.8/sjmisc/inst/doc/design_philosophy.html | 695 +++++++----- sjmisc-2.7.8/sjmisc/inst/doc/exploringdatasets.html | 536 ++++++--- sjmisc-2.7.8/sjmisc/inst/doc/recodingvariables.R |only sjmisc-2.7.8/sjmisc/inst/doc/recodingvariables.Rmd |only sjmisc-2.7.8/sjmisc/inst/doc/recodingvariables.html |only sjmisc-2.7.8/sjmisc/man/find_var.Rd | 23 sjmisc-2.7.8/sjmisc/man/frq.Rd | 8 sjmisc-2.7.8/sjmisc/man/group_str.Rd | 21 sjmisc-2.7.8/sjmisc/man/is_empty.Rd | 3 sjmisc-2.7.8/sjmisc/man/merge_imputations.Rd | 2 sjmisc-2.7.8/sjmisc/man/rec.Rd | 4 sjmisc-2.7.8/sjmisc/man/recode_to.Rd | 2 sjmisc-2.7.8/sjmisc/man/reexports.Rd | 3 sjmisc-2.7.8/sjmisc/man/replace_na.Rd | 2 sjmisc-2.7.8/sjmisc/man/set_na_if.Rd |only sjmisc-2.7.8/sjmisc/man/split_var.Rd | 2 sjmisc-2.7.8/sjmisc/man/spread_coef.Rd | 5 sjmisc-2.7.8/sjmisc/man/std.Rd | 2 sjmisc-2.7.8/sjmisc/man/str_find.Rd |only sjmisc-2.7.8/sjmisc/man/str_start.Rd | 19 sjmisc-2.7.8/sjmisc/man/to_character.Rd | 50 sjmisc-2.7.8/sjmisc/man/to_label.Rd | 73 - sjmisc-2.7.8/sjmisc/man/to_long.Rd | 18 sjmisc-2.7.8/sjmisc/man/to_value.Rd | 51 sjmisc-2.7.8/sjmisc/man/typical_value.Rd |only sjmisc-2.7.8/sjmisc/man/var_rename.Rd | 5 sjmisc-2.7.8/sjmisc/tests/testthat/test-findvar.R | 2 sjmisc-2.7.8/sjmisc/tests/testthat/test-group_str.R | 2 sjmisc-2.7.8/sjmisc/tests/testthat/test-isempty.R | 3 sjmisc-2.7.8/sjmisc/tests/testthat/test-merge_imputations.R |only sjmisc-2.7.8/sjmisc/tests/testthat/test-strstartend.R | 4 sjmisc-2.7.8/sjmisc/vignettes/design_philosophy.Rmd | 2 sjmisc-2.7.8/sjmisc/vignettes/recodingvariables.Rmd |only 73 files changed, 1396 insertions(+), 1659 deletions(-)
Title: Fast Estimation of Gaussian Mixture Copula Models
Description: Unsupervised Clustering and Meta-analysis using Gaussian Mixture
Copula Models.
Author: Anders Ellern Bilgrau, Martin Boegsted, Poul Svante Eriksen
Maintainer: Anders Ellern Bilgrau <anders.ellern.bilgrau@gmail.com>
Diff between GMCM versions 1.3.1 dated 2019-02-14 and 1.3.2 dated 2019-03-12
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- inst/NEWS.Rd | 8 +++++++- inst/doc/GMCM-JStatSoft.pdf |binary tests/testthat/test-EMAlgorithm.R | 1 + 5 files changed, 15 insertions(+), 8 deletions(-)
Title: Epimed Solutions Collection for Data Editing, Analysis, and
Benchmark of Health Units
Description: Collection of functions for data analysis and
editing of clinical and epidemiological data.
Most of them are related to benchmark with prediction models.
Author: Lunna Borges [aut, cre],
Pedro Brasil [aut],
Camila Cardoso [aut],
Caio Ferreira [aut]
Maintainer: Lunna Borges <lunna.borges@epimedsolutions.com>
Diff between ems versions 1.2.1 dated 2018-11-16 and 1.2.6 dated 2019-03-12
DESCRIPTION | 29 +++++++------- MD5 | 32 +++++++-------- NEWS | 40 ++++++++++++++++++- R/SMR.R | 2 R/funnel.R | 2 R/miscellaneous.R | 31 +++++++++++---- R/mortality_rate.R | 103 +++++++++++++++++++++++++++++++++++++++++--------- R/tableStack.R | 2 man/SMR.Rd | 37 +++++++++-------- man/SRU.Rd | 18 ++++---- man/calcurve.Rd | 15 +++---- man/dataquality.Rd | 5 +- man/funnel.Rd | 43 ++++++++++---------- man/miscellaneous.Rd | 25 ++++++++++-- man/mortality_rate.Rd | 11 +++-- man/reclass.Rd | 23 +++++------ man/tableStack.Rd | 11 ++--- 17 files changed, 292 insertions(+), 137 deletions(-)
Title: Generate 'CodeMeta' Metadata for R Packages
Description: The 'Codemeta' Project defines a 'JSON-LD' format for describing
software metadata, as detailed at <https://codemeta.github.io>. This package
provides utilities to generate, parse, and modify 'codemeta.json' files
automatically for R packages, as well as tools and examples for working with
'codemeta.json' 'JSON-LD' more generally.
Author: Carl Boettiger [aut, cre, cph]
(<https://orcid.org/0000-0002-1642-628X>),
Anna Krystalli [rev, ctb] (<https://orcid.org/0000-0002-2378-4915>),
Toph Allen [rev] (<https://orcid.org/0000-0003-4580-091X>),
Maëlle Salmon [ctb, aut] (<https://orcid.org/0000-0002-2815-0399>),
rOpenSci [fnd] (https://ropensci.org/),
Katrin Leinweber [ctb] (<https://orcid.org/0000-0001-5135-5758>),
Noam Ross [ctb] (<https://orcid.org/0000-0002-2136-0000>),
Arfon Smith [ctb],
Jeroen Ooms [ctb] (<https://orcid.org/0000-0002-4035-0289>),
Sebastian Meyer [ctb] (<https://orcid.org/0000-0002-1791-9449>),
Michael Rustler [ctb] (<https://orcid.org/0000-0003-0647-7726>),
Hauke Sonnenberg [ctb] (<https://orcid.org/0000-0001-9134-2871>)
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between codemetar versions 0.1.6 dated 2018-05-06 and 0.1.7 dated 2019-03-12
codemetar-0.1.6/codemetar/R/add_metadata.R |only codemetar-0.1.6/codemetar/R/codemetar.R |only codemetar-0.1.6/codemetar/R/guess_metadata.R |only codemetar-0.1.6/codemetar/man/crosswalk_transform.Rd |only codemetar-0.1.6/codemetar/tests/testthat/test-jsonld-compact.R |only codemetar-0.1.7/codemetar/DESCRIPTION | 50 - codemetar-0.1.7/codemetar/MD5 | 99 +- codemetar-0.1.7/codemetar/NAMESPACE | 6 codemetar-0.1.7/codemetar/NEWS.md | 18 codemetar-0.1.7/codemetar/R/codemeta_description.R | 351 ++++++---- codemetar-0.1.7/codemetar/R/codemeta_readme.R | 150 +++- codemetar-0.1.7/codemetar/R/codemeta_validate.R | 84 +- codemetar-0.1.7/codemetar/R/codemetar-package.R |only codemetar-0.1.7/codemetar/R/create_codemeta.R | 209 +++-- codemetar-0.1.7/codemetar/R/crosswalk.R | 301 +++++--- codemetar-0.1.7/codemetar/R/extract_badges.R | 117 ++- codemetar-0.1.7/codemetar/R/get_message.R |only codemetar-0.1.7/codemetar/R/get_url.R |only codemetar-0.1.7/codemetar/R/give_opinions.R | 234 ++++-- codemetar-0.1.7/codemetar/R/guess_github_metadata.R |only codemetar-0.1.7/codemetar/R/guess_other_metadata.R |only codemetar-0.1.7/codemetar/R/guess_provider.R |only codemetar-0.1.7/codemetar/R/parse_citation.R | 208 +++-- codemetar-0.1.7/codemetar/R/parse_depends.R | 145 ++-- codemetar-0.1.7/codemetar/R/parse_people.R | 197 +++-- codemetar-0.1.7/codemetar/R/spdx_license.R | 18 codemetar-0.1.7/codemetar/R/utils-pipe.R |only codemetar-0.1.7/codemetar/R/utils.R | 282 ++++++-- codemetar-0.1.7/codemetar/R/write_codemeta.R | 119 +-- codemetar-0.1.7/codemetar/build/vignette.rds |binary codemetar-0.1.7/codemetar/inst/doc/codemeta-intro.html | 171 +++- codemetar-0.1.7/codemetar/inst/examples/DESCRIPTION_good_readmeinurl |only codemetar-0.1.7/codemetar/inst/examples/README_fakepackage.md | 2 codemetar-0.1.7/codemetar/inst/examples/README_fakepackage2.md | 2 codemetar-0.1.7/codemetar/inst/examples/README_fakepackage3.md |only codemetar-0.1.7/codemetar/inst/examples/README_fakepackage4.md |only codemetar-0.1.7/codemetar/inst/examples/README_fakepackage5.md |only codemetar-0.1.7/codemetar/inst/examples/README_fakepackage6.md |only codemetar-0.1.7/codemetar/inst/examples/README_fakepackage7.md |only codemetar-0.1.7/codemetar/man/add_context.Rd | 8 codemetar-0.1.7/codemetar/man/codemeta_validate.Rd | 11 codemetar-0.1.7/codemetar/man/codemetar-package.Rd | 11 codemetar-0.1.7/codemetar/man/create_codemeta.Rd | 22 codemetar-0.1.7/codemetar/man/crosswalk.Rd | 24 codemetar-0.1.7/codemetar/man/crosswalk_table.Rd | 16 codemetar-0.1.7/codemetar/man/drop_context.Rd | 8 codemetar-0.1.7/codemetar/man/extract_badges.Rd | 4 codemetar-0.1.7/codemetar/man/pipe.Rd |only codemetar-0.1.7/codemetar/man/write_codemeta.Rd | 57 - codemetar-0.1.7/codemetar/tests/testthat/test-codemeta_description.R | 81 +- codemetar-0.1.7/codemetar/tests/testthat/test-crosswalk.R | 49 - codemetar-0.1.7/codemetar/tests/testthat/test-extract_badges.R | 13 codemetar-0.1.7/codemetar/tests/testthat/test-get_message.R |only codemetar-0.1.7/codemetar/tests/testthat/test-get_url.R |only codemetar-0.1.7/codemetar/tests/testthat/test-give_opinions.R | 126 ++- codemetar-0.1.7/codemetar/tests/testthat/test-guess_metadata.R | 65 + codemetar-0.1.7/codemetar/tests/testthat/test-parse_depends.R | 27 codemetar-0.1.7/codemetar/tests/testthat/test-parse_people.R | 21 codemetar-0.1.7/codemetar/tests/testthat/test-utils.R | 20 codemetar-0.1.7/codemetar/tests/testthat/test-write_codemeta.R | 18 codemetar-0.1.7/codemetar/vignettes/articles/translating-codemeta.Rmd | 2 61 files changed, 2228 insertions(+), 1118 deletions(-)
Title: Load Data from 'MyTarget API v2'
Description: Allows work with 'MyTarget API v2'
<https://target.my.com/doc/apiv2/ru/detailed.html> and
load data by ads, campaigns, agency clients and statistic from
your ads account.
Author: Alexey Seleznev
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rmytarget versions 2.1.4 dated 2019-03-07 and 2.1.6 dated 2019-03-12
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NAMESPACE | 4 +++- NEWS.md | 9 +++++++++ R/myTarAuth.R | 4 ++-- R/myTarGetAdList.R | 2 +- R/myTarGetCampaignList.R | 2 +- R/myTarGetStats.R | 2 +- build/partial.rdb |binary 9 files changed, 30 insertions(+), 19 deletions(-)
Title: Display and Analyze ROC Curves
Description: Tools for visualizing, smoothing and comparing receiver operating characteristic (ROC curves). (Partial) area under the curve (AUC) can be compared with statistical tests based on U-statistics or bootstrap. Confidence intervals can be computed for (p)AUC or ROC curves.
Author: Xavier Robin [cre, aut] (<https://orcid.org/0000-0002-6813-3200>),
Natacha Turck [aut],
Alexandre Hainard [aut],
Natalia Tiberti [aut],
Frédérique Lisacek [aut],
Jean-Charles Sanchez [aut],
Markus Müller [aut],
Stefan Siegert [ctb] (Fast DeLong code),
Matthias Doering [ctb] (Hand & Till Multiclass)
Maintainer: Xavier Robin <pROC-cran@xavier.robin.name>
Diff between pROC versions 1.13.0 dated 2018-09-24 and 1.14.0 dated 2019-03-12
DESCRIPTION | 19 +-- MD5 | 160 +++++++++++++++++--------- NAMESPACE | 12 + NEWS | 11 + R/auc.R | 25 +++- R/bootstrap.R | 136 +++++++++++----------- R/ci.R | 26 ++++ R/ci.auc.R | 29 ++++ R/ci.coords.R | 23 +++ R/ci.multiclass.auc.R | 117 +++++++++---------- R/ci.se.R | 22 +++ R/ci.sp.R | 22 +++ R/ci.thresholds.R | 21 +++ R/coords.R | 4 R/cov.R | 2 R/delong.R | 2 R/ggroc.R | 42 ++++-- R/groupGeneric.R | 4 R/lines.roc.R | 26 +++- R/multiclass.R | 181 +++++++++++++++++++++++++----- R/plot.roc.R | 39 ++++-- R/print.R | 45 ++++++- R/roc.R | 24 +++ R/roc.test.R | 6 R/roc.utils.R | 37 +++++- R/smooth.R | 9 - R/var.R | 4 README.md | 25 +++- man/auc.Rd | 7 - man/ci.Rd | 8 + man/ci.auc.Rd | 9 + man/ggroc.Rd | 20 ++- man/lines.roc.Rd | 3 man/multiclass.Rd | 87 +++++++++++++- man/plot.roc.Rd | 3 man/print.Rd | 4 man/roc.Rd | 3 tests/figs/deps.txt | 5 tests/figs/ggroc |only tests/figs/plot/advanced-screenshot-1.svg | 42 +++--- tests/figs/plot/advanced-screenshot-2.svg | 32 ++--- tests/figs/plot/advanced-screenshot-3.svg | 46 +++---- tests/figs/plot/advanced-screenshot-4.svg | 28 ++-- tests/figs/plot/advanced-screenshot-5.svg | 32 ++--- tests/figs/plot/advanced-screenshot-6.svg | 38 +++--- tests/figs/plot/basic-ndka.svg | 26 ++-- tests/figs/plot/basic-s100b.svg | 26 ++-- tests/figs/plot/basic-wfns.svg | 26 ++-- tests/figs/plot/legacy-axes.svg | 28 ++-- tests/figs/plot/plot-formula.svg |only tests/testthat.R | 19 --- tests/testthat/helper-rocs.R |only tests/testthat/print_output |only tests/testthat/test-auc.R | 8 - tests/testthat/test-ci.auc.R | 4 tests/testthat/test-ci.coords.R | 2 tests/testthat/test-coords.R | 3 tests/testthat/test-ggroc.R |only tests/testthat/test-large.R | 6 tests/testthat/test-multiclass.R |only tests/testthat/test-plot.R | 32 ++++- tests/testthat/test-print.R |only tests/testthat/test-roc.R | 1 tests/testthat/test-roc.test.R | 3 64 files changed, 1107 insertions(+), 517 deletions(-)
Title: Choosing the Sample Strategy
Description: Intended to assist in the choice of the sampling strategy to implement in a survey.
Author: Edgar Bueno <edgar.bueno@stat.su.se>
Maintainer: Edgar Bueno <edgar.bueno@stat.su.se>
Diff between optimStrat versions 1.1 dated 2018-09-10 and 2.0 dated 2019-03-12
optimStrat-1.1/optimStrat/R/stratvar.R |only optimStrat-1.1/optimStrat/man/stratvar.Rd |only optimStrat-2.0/optimStrat/DESCRIPTION | 12 optimStrat-2.0/optimStrat/MD5 | 44 - optimStrat-2.0/optimStrat/NAMESPACE | 2 optimStrat-2.0/optimStrat/R/desmse.R |only optimStrat-2.0/optimStrat/R/expmse.R |only optimStrat-2.0/optimStrat/R/expmsepips.R |only optimStrat-2.0/optimStrat/R/expmsestsi.R |only optimStrat-2.0/optimStrat/R/gk.R |only optimStrat-2.0/optimStrat/R/optiallo.R |only optimStrat-2.0/optimStrat/R/optimApp.R | 2 optimStrat-2.0/optimStrat/R/pinc.R |only optimStrat-2.0/optimStrat/R/varpips.R | 8 optimStrat-2.0/optimStrat/R/varpipspos.R |only optimStrat-2.0/optimStrat/R/varpipsreg.R |only optimStrat-2.0/optimStrat/R/varstsi.R | 26 optimStrat-2.0/optimStrat/R/varstsipos.R |only optimStrat-2.0/optimStrat/R/varstsireg.R |only optimStrat-2.0/optimStrat/R/vk.R |only optimStrat-2.0/optimStrat/inst/optimStrat/myapp/server.R | 275 +++----- optimStrat-2.0/optimStrat/inst/optimStrat/myapp/ui.R | 496 +++++---------- optimStrat-2.0/optimStrat/man/desmse.Rd |only optimStrat-2.0/optimStrat/man/expmse.Rd |only optimStrat-2.0/optimStrat/man/expmsepips.Rd |only optimStrat-2.0/optimStrat/man/expmsestsi.Rd |only optimStrat-2.0/optimStrat/man/gk.Rd |only optimStrat-2.0/optimStrat/man/optiallo.Rd |only optimStrat-2.0/optimStrat/man/pinc.Rd |only optimStrat-2.0/optimStrat/man/varpips.Rd | 18 optimStrat-2.0/optimStrat/man/varpipspos.Rd |only optimStrat-2.0/optimStrat/man/varpipsreg.Rd |only optimStrat-2.0/optimStrat/man/varstsi.Rd | 40 - optimStrat-2.0/optimStrat/man/varstsipos.Rd |only optimStrat-2.0/optimStrat/man/varstsireg.Rd |only optimStrat-2.0/optimStrat/man/vk.Rd |only 36 files changed, 379 insertions(+), 544 deletions(-)
Title: Genetic Algorithm for Sequential Symmetric Games
Description: Finds adaptive strategies for sequential symmetric
games using a genetic algorithm. Currently, any symmetric two by two matrix
is allowed, and strategies can remember the history of an opponent's play
from the previous three rounds of moves in iterated interactions between
players. The genetic algorithm returns a list of adaptive strategies given
payoffs, and the mean fitness of strategies in each generation.
Author: A. Bradley Duthie [aut, cre] (<https://orcid.org/0000-0001-8343-4995>)
Maintainer: A. Bradley Duthie <brad.duthie@gmail.com>
Diff between gamesGA versions 1.1.3.5 dated 2018-08-31 and 1.1.3.6 dated 2019-03-12
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- tests/testthat/test-crossover.R | 7 ------- tests/testthat/test-tournament.R | 31 +------------------------------ 4 files changed, 8 insertions(+), 44 deletions(-)
Title: Composite Indicators Functions
Description: Contains functions to enhance approaches to the Composite Indicators methods, focusing, in particular, on the normalisation and weighting-aggregation steps.
Author: Francesco Vidoli, Elisa Fusco
Maintainer: Francesco Vidoli <fvidoli@gmail.com>
Diff between Compind versions 2.0 dated 2018-02-17 and 2.1 dated 2019-03-12
DESCRIPTION | 8 ++++---- MD5 | 22 ++++++++++++++-------- NEWS | 8 ++++++++ R/bandwidth_CI.R | 9 ++++++--- R/bandwidth_CI_bad.R |only R/ci_bod_constr_mpi.R |only R/ci_rbod_constr_Q.R |only build/vignette.rds |binary inst/doc/Compind_vignette.pdf |binary man/bandwidth_CI.Rd | 12 +++++------- man/bandwidth_CI_bad.Rd |only man/ci_bod_constr_mpi.Rd |only man/ci_rbod_constr_Q.Rd |only man/ci_rbod_constr_bad.Rd | 6 +++--- man/ci_rbod_constr_bad_Q.Rd | 2 +- 15 files changed, 41 insertions(+), 26 deletions(-)
Title: Data and Methods Around Reference Values in Pediatrics
Description: Calculation of standard deviation scores and percentiles adduced from different
growth standards (WHO, UK, Germany, Italy, China, etc). Therefore, the calculation of SDS-values
for different measures like BMI, weight, height, head circumference, different
ratios, etc. are easy to carry out. Also, references for laboratory values in
children and adults are available, e.g., serum lipids, iron-related blood parameters, IGF, liver enzymes. In the
new version, there are also functions combining the lms() function from package 'gamlss' with
resampling methods for using with repeated measurements and family dependencies. A searchable list
of items can be found here: <https://github.com/mvogel78/childsds/wiki>.
Author: Mandy Vogel [aut, cre]
Maintainer: Mandy Vogel <mandy.vogel@googlemail.com>
Diff between childsds versions 0.7.1 dated 2019-01-08 and 0.7.3 dated 2019-03-12
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 5 +++++ R/misc.R | 2 +- data/nl4.ref.rda |binary 5 files changed, 13 insertions(+), 8 deletions(-)
Title: 3D Visualization Using OpenGL
Description: Provides medium to high level functions for 3D interactive graphics, including
functions modelled on base graphics (plot3d(), etc.) as well as functions for
constructing representations of geometric objects (cube3d(), etc.). Output
may be on screen using OpenGL, or to various standard 3D file formats including
WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Daniel Adler <dadler@uni-goettingen.de>, Duncan Murdoch <murdoch@stats.uwo.ca>, and others (see README)
Maintainer: Duncan Murdoch <murdoch@stats.uwo.ca>
Diff between rgl versions 0.100.18 dated 2019-03-08 and 0.100.19 dated 2019-03-12
DESCRIPTION | 6 MD5 | 16 inst/NEWS | 3 inst/doc/WebGL.html | 6425 ++++++++++++++++++++++++++++++++++++++++++++-- inst/doc/legacyWebGL.html | 6344 ++++++++++++++++++++++++++++++++++++++++++++- inst/doc/rgl.html | 6236 +++++++++++++++++++++++++++++++++++++++++++- src/SphereSet.cpp | 1 src/TextSet.cpp | 2 src/subscene.cpp | 4 9 files changed, 18585 insertions(+), 452 deletions(-)
Title: Solver for Delay Differential Equations
Description: Routines for solving systems of delay differential equations by
interfacing numerical routines written by Simon N. Wood , with contributions
by Benjamin J. Cairns. These numerical routines first appeared in Simon
Wood's 'solv95' program. This package includes a vignette and a complete
user's guide. 'PBSddesolve' originally appeared on CRAN under the name
'ddesolve'. That version is no longer supported. The current name emphasizes
a close association with other PBS packages, particularly 'PBSmodelling'.
Author: Alex Couture-Beil [aut],
Jon T. Schnute [aut],
Rowan Haigh [aut, cre],
Simon N. Wood [aut],
Benjamin J. Cairns [aut],
Nicholas Boers [ctb]
Maintainer: Rowan Haigh <rowan.haigh@dfo-mpo.gc.ca>
Diff between PBSddesolve versions 1.12.2 dated 2016-09-20 and 1.12.4 dated 2019-03-12
DESCRIPTION | 20 +- MD5 | 22 +-- inst/doc/ChangeLog.txt | 278 +++++++++++++++++++++++++++-------------- inst/doc/PBSddesolveIntro.pdf |binary man/PBSddesolve.Rd | 10 + man/dde.Rd | 16 +- man/pastvalue.Rd | 8 + src/PBSddesolve.c | 189 +++++++++++++-------------- src/PBSddesolve.h | 104 ++++++++++----- src/ddesolve95.h |only src/init.c |only src/r_model.c | 86 +++++------- vignettes/PBSddesolveIntro.Rnw | 72 ++++------ 13 files changed, 467 insertions(+), 338 deletions(-)
Title: Length-Based Spawning Potential Ratio
Description: Simulate expected equilibrium length composition, yield-per-recruit, and
the spawning potential ratio (SPR) using the length-based SPR (LBSPR) model. Fit the LBSPR
model to length data to estimate selectivity, relative apical fishing mortality, and
the spawning potential ratio for data-limited fisheries.
See Hordyk et al (2016) <doi:10.1139/cjfas-2015-0422> for more information about the
LBSPR assessment method.
Author: Adrian Hordyk [aut, cre]
Maintainer: Adrian Hordyk <ar.hordyk@gmail.com>
Diff between LBSPR versions 0.1.2 dated 2017-08-15 and 0.1.3 dated 2019-03-12
DESCRIPTION | 9 +- MD5 | 38 +++++----- R/LBSPRfit_.r | 9 ++ R/plotSPRCirc.r | 45 +++++++----- R/plotSize.r | 127 ++++++++++++++++++------------------ R/plotTarg.r | 3 build/vignette.rds |binary inst/doc/LBSPR.html | 104 ++++++++++++++++++++++++----- inst/shiny_apps/LBSPR/server.r | 116 +++++++++++++++++--------------- man/LBSPR_NLLgtg.Rd | 4 - man/LBSPRfit.Rd | 4 - man/LBSPRfit_.Rd | 4 - man/initialize-LB_lengths-method.Rd | 5 - man/initialize-LB_obj-method.Rd | 3 man/plotCurves.Rd | 6 - man/plotMat.Rd | 4 - man/plotSPRCirc.Rd | 4 - man/plotSim.Rd | 8 +- man/plotSize.Rd | 7 + src/NLLabsel.cpp | 2 20 files changed, 300 insertions(+), 202 deletions(-)
Title: Tools for Working with Hansen et al. Global Forest Change
Dataset
Description: Supports analyses using the Global Forest Change dataset released
by Hansen et al. gfcanalysis was originally written for the Tropical Ecology
Assessment and Monitoring (TEAM) Network. For additional details on the
Global Forest Change dataset, see: Hansen, M. et al. 2013. "High-Resolution
Global Maps of 21st-Century Forest Cover Change." Science 342 (15
November): 850-53. The forest change data and more information on the
product is available at <http://earthenginepartners.appspot.com>.
Author: Matthew Cooper [cre],
Alex Zvoleff [aut]
Maintainer: Matthew Cooper <mw.coop.r@gmail.com>
Diff between gfcanalysis versions 1.4 dated 2015-11-21 and 1.5.0 dated 2019-03-12
DESCRIPTION | 37 +++++++++++++++++----------------- MD5 | 48 ++++++++++++++++++++++----------------------- NEWS | 7 ++++++ R/animate_annual.R | 15 ++++++++++---- R/annual_stack.R | 5 ++-- R/download_tiles.R | 14 ++++++------- R/extract_gfc.R | 16 +++++++-------- R/gfc_stats.R | 16 ++++++++++----- R/threshold_gfc.R | 4 +-- README.md | 21 ++++++++++++------- man/animate_annual.Rd | 5 +--- man/annual_stack.Rd | 5 +--- man/calc_gfc_tiles.Rd | 1 man/calc_pixel_areas.Rd | 1 man/download_tiles.Rd | 7 ++---- man/extract_gfc.Rd | 5 +--- man/gen_grid.Rd | 1 man/gfc_stats.Rd | 7 ++---- man/gfc_tiles.Rd | 1 man/plot_gfc.Rd | 1 man/scale_by_pixel_area.Rd | 1 man/scale_toar.Rd | 1 man/test_poly.Rd | 1 man/threshold_gfc.Rd | 1 man/utm_zone.Rd | 7 ++---- 25 files changed, 120 insertions(+), 108 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-12 1.0
Title: Super Imposition by Translation and Rotation Growth Curve
Analysis
Description: Functions for fitting and plotting SITAR (Super
Imposition by Translation And Rotation) growth curve models. SITAR is
a shape-invariant model with a regression B-spline mean curve and
subject-specific random effects on both the measurement and age
scales. The model was first described by Lindstrom (1995)
<doi:10.1002/sim.4780141807> and developed as the SITAR method by Cole
et al (2010) <doi:10.1093/ije/dyq115>.
Author: Tim Cole [aut, cre] (<https://orcid.org/0000-0001-5711-8200>)
Maintainer: Tim Cole <tim.cole@ucl.ac.uk>
Diff between sitar versions 1.1.0 dated 2018-06-19 and 1.1.1 dated 2019-03-12
DESCRIPTION | 41 +- MD5 | 64 ++-- NAMESPACE | 16 - NEWS | 29 + R/LMS2z.R | 68 ++-- R/apv_se.R |only R/dfset.R | 14 R/getData.sitar.R | 10 R/getPeakTrough.R | 11 R/mplot.R | 3 R/plot.sitar.R | 465 +++++++++++++++++--------------- R/predict.sitar.R | 214 ++++++++------ R/sitar.R | 111 ++++--- R/xyadj.R | 19 + build/vignette.rds |binary inst/doc/Fitting_models_with_SITAR.html | 78 +++-- man/BICadj.Rd | 3 man/LMS2z.Rd | 7 man/LMSfit.Rd | 4 man/apv_se.Rd |only man/cLMS.Rd | 1 man/codeplot.Rd | 1 man/dfset.Rd | 8 man/getPeakTrough.Rd | 5 man/mplot.Rd | 3 man/pdLMS.Rd | 4 man/plot.sitar.Rd | 39 +- man/predict.sitar.Rd | 18 - man/recalib.Rd | 4 man/sitar.Rd | 11 man/summary.sitar.Rd | 3 man/timegap.Rd | 2 man/xaxsd.Rd | 1 man/xyadj.Rd | 3 34 files changed, 718 insertions(+), 542 deletions(-)
Title: Estimating Disease Prevalence from Registry Data
Description: Estimates disease prevalence for a given index date, using existing
registry data extended with Monte Carlo simulations.
Author: Stuart Lacy [cre, aut],
Simon Crouch [aut],
Stephanie Lax [aut]
Maintainer: Stuart Lacy <stuart.lacy@york.ac.uk>
Diff between rprev versions 1.0.1 dated 2019-01-21 and 1.0.2 dated 2019-03-12
DESCRIPTION | 8 ++--- MD5 | 12 +++---- NEWS.md | 4 ++ inst/doc/diagnostics.html | 44 ++++++++++++++-------------- inst/doc/user_guide.html | 58 +++++++++++++++++++------------------- tests/testthat/test_diagnostics.R | 1 tests/testthat/test_prevalence.R | 3 + 7 files changed, 68 insertions(+), 62 deletions(-)
Title: Steady and Unsteady Open-Channel Flow Computation
Description: A tool for undergraduate and graduate courses in open-channel
hydraulics. Provides functions for computing normal and critical depths,
steady-state water surface profiles (e.g. backwater curves) and unsteady flow
computations (e.g. flood wave routing).
Author: Michael C Koohafkan [aut, cre]
Maintainer: Michael C Koohafkan <michael.koohafkan@gmail.com>
Diff between rivr versions 1.2 dated 2016-03-14 and 1.2-1 dated 2019-03-12
rivr-1.2-1/rivr/DESCRIPTION | 23 rivr-1.2-1/rivr/MD5 | 54 rivr-1.2-1/rivr/NEWS.md |only rivr-1.2-1/rivr/R/RcppExports.R | 20 rivr-1.2-1/rivr/build/vignette.rds |binary rivr-1.2-1/rivr/inst/CITATION | 4 rivr-1.2-1/rivr/inst/doc/publication-reproduction.R | 4 rivr-1.2-1/rivr/inst/doc/publication-reproduction.Rmd | 21 rivr-1.2-1/rivr/inst/doc/publication-reproduction.html | 1406 +++++++++-------- rivr-1.2-1/rivr/inst/doc/quickstart.Rmd | 14 rivr-1.2-1/rivr/inst/doc/quickstart.html | 597 ++++--- rivr-1.2-1/rivr/inst/doc/technical-vignette.Rmd | 17 rivr-1.2-1/rivr/inst/doc/technical-vignette.html | 686 +++----- rivr-1.2-1/rivr/man/channel_geom.Rd | 1 rivr-1.2-1/rivr/man/compute_profile.Rd | 1 rivr-1.2-1/rivr/man/conveyance.Rd | 1 rivr-1.2-1/rivr/man/critical_depth.Rd | 1 rivr-1.2-1/rivr/man/demo_shiny.Rd | 1 rivr-1.2-1/rivr/man/froude.Rd | 1 rivr-1.2-1/rivr/man/normal_depth.Rd | 1 rivr-1.2-1/rivr/man/rivr-package.Rd | 3 rivr-1.2-1/rivr/man/route_wave.Rd | 1 rivr-1.2-1/rivr/man/waterolympics.Rd | 1 rivr-1.2-1/rivr/src/RcppExports.cpp | 110 - rivr-1.2-1/rivr/src/rivmech_characteristic_v7.cpp | 2 rivr-1.2-1/rivr/vignettes/publication-reproduction.Rmd | 21 rivr-1.2-1/rivr/vignettes/quickstart.Rmd | 14 rivr-1.2-1/rivr/vignettes/technical-vignette.Rmd | 17 rivr-1.2/rivr/NEWS |only 29 files changed, 1604 insertions(+), 1418 deletions(-)
Title: An Exponential Stochastic Block Model for Interaction Lengths
Description: Given a continuous-time dynamic network, this package allows one to fit a stochastic blockmodel where nodes belonging to the same group create interactions and non-interactions of similar lengths. This package implements the methodology described by R. Rastelli and M. Fop (2019) <arXiv:1901.09828>.
Author: Riccardo Rastelli [aut, cre] (<https://orcid.org/0000-0003-0982-2935>),
Michael Fop [aut] (<https://orcid.org/0000-0003-3936-2757>)
Maintainer: Riccardo Rastelli <riccardoras@gmail.com>
Diff between expSBM versions 1.0 dated 2019-02-11 and 1.1 dated 2019-03-12
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- build/partial.rdb |binary src/expsbm_optimisation.cpp | 5 +++-- 4 files changed, 10 insertions(+), 9 deletions(-)
Title: Diversity-Dependent Diversification
Description: Implements maximum likelihood and bootstrap methods based on
the diversity-dependent birth-death process to test whether
speciation or extinction are diversity-dependent, under various
models including various types of key innovations.
See Etienne et al. 2012, Proc. Roy. Soc. B 279: 1300-1309,
<DOI:10.1098/rspb.2011.1439>,
Etienne & Haegeman 2012, Am. Nat. 180: E75-E89,
<DOI:10.1086/667574> and
Etienne et al. 2016. Meth. Ecol. Evol. 7: 1092-1099,
<DOI:10.1111/2041-210X.12565>.
Also contains functions to simulate the diversity-dependent
process.
Author: Rampal S. Etienne & Bart Haegeman
Maintainer: Rampal S. Etienne <r.s.etienne@rug.nl>
Diff between DDD versions 3.7 dated 2018-04-24 and 3.8.1 dated 2019-03-12
DDD-3.7/DDD/man/DDD-internal.Rd |only DDD-3.7/DDD/man/DDD-package.Rd |only DDD-3.7/DDD/src/dd_loglik_rhs_FORTRAN.f |only DDD-3.8.1/DDD/DESCRIPTION | 30 + DDD-3.8.1/DDD/MD5 | 102 +++--- DDD-3.8.1/DDD/NAMESPACE | 44 +- DDD-3.8.1/DDD/R/bd_ML.R | 126 ++++++-- DDD-3.8.1/DDD/R/bd_loglik.R | 79 ++++- DDD-3.8.1/DDD/R/dd_KI_ML.R | 177 ++++++++--- DDD-3.8.1/DDD/R/dd_KI_loglik.R | 127 ++++++-- DDD-3.8.1/DDD/R/dd_KI_loglik_choosepar.R | 2 DDD-3.8.1/DDD/R/dd_KI_sim.R | 103 +++++- DDD-3.8.1/DDD/R/dd_LR.R | 162 ++++++++-- DDD-3.8.1/DDD/R/dd_ML.R | 157 +++++++--- DDD-3.8.1/DDD/R/dd_MS_ML.R | 163 ++++++++-- DDD-3.8.1/DDD/R/dd_MS_loglik.R | 145 +++++++-- DDD-3.8.1/DDD/R/dd_MS_sim.R | 94 ++++-- DDD-3.8.1/DDD/R/dd_SR_ML.R | 120 +++++++ DDD-3.8.1/DDD/R/dd_SR_loglik.R | 96 +++++- DDD-3.8.1/DDD/R/dd_SR_sim.R | 62 +++- DDD-3.8.1/DDD/R/dd_bootstrap_sim.R | 2 DDD-3.8.1/DDD/R/dd_loglik.R | 103 +++++- DDD-3.8.1/DDD/R/dd_loglik_high_lambda.R |only DDD-3.8.1/DDD/R/dd_sim.R | 54 +++ DDD-3.8.1/DDD/R/dd_utils.R | 428 ++++++++++++++++++++++++++-- DDD-3.8.1/DDD/R/lamu_dd_td.R | 12 DDD-3.8.1/DDD/R/td_loglik_rhs.R | 6 DDD-3.8.1/DDD/R/td_sim.R | 328 ++++++++++----------- DDD-3.8.1/DDD/man/L2brts.Rd | 47 ++- DDD-3.8.1/DDD/man/L2phylo.Rd | 46 ++- DDD-3.8.1/DDD/man/bd_ML.Rd | 201 +++++++------ DDD-3.8.1/DDD/man/bd_loglik.Rd | 107 ++++--- DDD-3.8.1/DDD/man/brts2phylo.Rd |only DDD-3.8.1/DDD/man/conv.Rd |only DDD-3.8.1/DDD/man/dd_KI_ML.Rd | 266 ++++++++++------- DDD-3.8.1/DDD/man/dd_KI_loglik.Rd | 130 +++++--- DDD-3.8.1/DDD/man/dd_KI_sim.Rd | 112 ++++--- DDD-3.8.1/DDD/man/dd_LR.Rd | 237 ++++++++------- DDD-3.8.1/DDD/man/dd_ML.Rd | 235 ++++++++------- DDD-3.8.1/DDD/man/dd_MS_ML.Rd | 262 +++++++++-------- DDD-3.8.1/DDD/man/dd_MS_loglik.Rd | 131 +++++--- DDD-3.8.1/DDD/man/dd_MS_sim.Rd | 97 +++--- DDD-3.8.1/DDD/man/dd_SR_ML.Rd | 253 +++++++++------- DDD-3.8.1/DDD/man/dd_SR_loglik.Rd | 119 ++++--- DDD-3.8.1/DDD/man/dd_SR_sim.Rd | 99 +++--- DDD-3.8.1/DDD/man/dd_loglik.Rd | 127 ++++---- DDD-3.8.1/DDD/man/dd_sim.Rd | 87 +++-- DDD-3.8.1/DDD/man/optimizer.Rd | 47 ++- DDD-3.8.1/DDD/man/phylo2L.Rd |only DDD-3.8.1/DDD/man/roundn.Rd | 26 + DDD-3.8.1/DDD/man/sample2.Rd | 35 +- DDD-3.8.1/DDD/man/simplex.Rd |only DDD-3.8.1/DDD/man/transform_pars.Rd |only DDD-3.8.1/DDD/man/untransform_pars.Rd |only DDD-3.8.1/DDD/src/Makevars |only DDD-3.8.1/DDD/src/R_init_DDD.c | 18 - DDD-3.8.1/DDD/src/dd_loglik_rhs_FORTRAN.f95 |only DDD-3.8.1/DDD/tests/testthat/test_DDD.R | 9 58 files changed, 3727 insertions(+), 1686 deletions(-)
More information about SimRVSequences at CRAN
Permanent link
Title: Statistical Reporting in Clinical Trials
Description: It enables to create easily formatted statistical tables in 'Microsoft Word' documents in pretty formats according to 'clinical standards'. It can be used also outside the scope of clinical trials, for any statistical reporting in 'Word'. Descriptive tables for quantitative statistics (mean, median, max etc..) and/or qualitative statistics (frequencies and percentages) are available and formatted tables of Least Square Means of Linear Models, Linear Mixed Models and Generalized Linear Mixed Models coming from emmeans() function are also available. The package works with 'officer' and 'flextable' packages to export the outputs into 'Microsoft Word' documents.
Author: Jean-Francois Collin
Maintainer: Jean-Francois Collin <jfcollin@live.fr>
Diff between ClinReport versions 0.9.1.10 dated 2019-03-05 and 0.9.1.11 dated 2019-03-12
ClinReport-0.9.1.10/ClinReport/inst/doc/clinreport-vignette.R |only ClinReport-0.9.1.10/ClinReport/inst/doc/clinreport-vignette.Rmd |only ClinReport-0.9.1.10/ClinReport/inst/doc/clinreport-vignette.html |only ClinReport-0.9.1.10/ClinReport/vignettes/clinreport-vignette.Rmd |only ClinReport-0.9.1.11/ClinReport/DESCRIPTION | 11 ClinReport-0.9.1.11/ClinReport/MD5 | 80 +- ClinReport-0.9.1.11/ClinReport/NAMESPACE | 2 ClinReport-0.9.1.11/ClinReport/NEWS.md | 35 + ClinReport-0.9.1.11/ClinReport/R/add.stat.desc.R |only ClinReport-0.9.1.11/ClinReport/R/desc.R | 17 ClinReport-0.9.1.11/ClinReport/R/gg_desc_quali.R | 58 - ClinReport-0.9.1.11/ClinReport/R/gg_desc_quanti.R | 13 ClinReport-0.9.1.11/ClinReport/R/pkgname.R | 8 ClinReport-0.9.1.11/ClinReport/R/plot.desc.R | 24 ClinReport-0.9.1.11/ClinReport/R/regroup.desc.R | 111 +++ ClinReport-0.9.1.11/ClinReport/R/report.doc.R | 12 ClinReport-0.9.1.11/ClinReport/R/report.lsmeans.R | 2 ClinReport-0.9.1.11/ClinReport/R/report.quali.R | 2 ClinReport-0.9.1.11/ClinReport/R/report.quanti.R | 305 ++++++---- ClinReport-0.9.1.11/ClinReport/R/split.desc.R | 4 ClinReport-0.9.1.11/ClinReport/README.md | 24 ClinReport-0.9.1.11/ClinReport/build/vignette.rds |binary ClinReport-0.9.1.11/ClinReport/inst/TODO | 9 ClinReport-0.9.1.11/ClinReport/inst/dev_check_build.R | 45 + ClinReport-0.9.1.11/ClinReport/inst/doc/clinreport_graphics.R |only ClinReport-0.9.1.11/ClinReport/inst/doc/clinreport_graphics.Rmd |only ClinReport-0.9.1.11/ClinReport/inst/doc/clinreport_graphics.html |only ClinReport-0.9.1.11/ClinReport/inst/doc/clinreport_modify_outputs.R |only ClinReport-0.9.1.11/ClinReport/inst/doc/clinreport_modify_outputs.Rmd |only ClinReport-0.9.1.11/ClinReport/inst/doc/clinreport_modify_outputs.html |only ClinReport-0.9.1.11/ClinReport/inst/doc/clinreport_vignette_get_started.R |only ClinReport-0.9.1.11/ClinReport/inst/doc/clinreport_vignette_get_started.Rmd |only ClinReport-0.9.1.11/ClinReport/inst/doc/clinreport_vignette_get_started.html |only ClinReport-0.9.1.11/ClinReport/man/ClinReport.Rd | 10 ClinReport-0.9.1.11/ClinReport/man/add.stat.Rd |only ClinReport-0.9.1.11/ClinReport/man/desc.Rd | 8 ClinReport-0.9.1.11/ClinReport/man/figures/README-unnamed-chunk-1-1.png |binary ClinReport-0.9.1.11/ClinReport/man/figures/README-unnamed-chunk-1-1.svg |only ClinReport-0.9.1.11/ClinReport/man/gg_desc_quali.Rd | 4 ClinReport-0.9.1.11/ClinReport/man/gg_desc_quanti.Rd | 4 ClinReport-0.9.1.11/ClinReport/man/plot.desc.Rd | 12 ClinReport-0.9.1.11/ClinReport/man/regroup.Rd | 26 ClinReport-0.9.1.11/ClinReport/man/report.doc.Rd | 12 ClinReport-0.9.1.11/ClinReport/man/report.lsmeans.Rd | 2 ClinReport-0.9.1.11/ClinReport/man/report.quali.Rd | 2 ClinReport-0.9.1.11/ClinReport/man/report.quanti.Rd | 48 + ClinReport-0.9.1.11/ClinReport/man/split.desc.Rd | 6 ClinReport-0.9.1.11/ClinReport/vignettes/clinreport-vignette.R |only ClinReport-0.9.1.11/ClinReport/vignettes/clinreport_graphics.Rmd |only ClinReport-0.9.1.11/ClinReport/vignettes/clinreport_modify_outputs.Rmd |only ClinReport-0.9.1.11/ClinReport/vignettes/clinreport_vignette_get_started.Rmd |only 51 files changed, 631 insertions(+), 265 deletions(-)
Title: Tools for Developing Binary Logistic Regression Models
Description: Tools designed to make it easier for beginner and intermediate users to build and validate
binary logistic regression models. Includes bivariate analysis, comprehensive regression output,
model fit statistics, variable selection procedures, model validation techniques and a 'shiny'
app for interactive model building.
Author: Aravind Hebbali [aut, cre] (<https://orcid.org/0000-0001-9220-9669>)
Maintainer: Aravind Hebbali <hebbali.aravind@gmail.com>
Diff between blorr versions 0.2.0 dated 2018-12-14 and 0.2.1 dated 2019-03-12
DESCRIPTION | 10 - MD5 | 150 ++++++++++++++--------------- NAMESPACE | 5 NEWS.md | 4 R/blr-backward-elimination.R | 8 - R/blr-bivariate-analysis.R | 59 ----------- R/blr-forward-selection.R | 14 -- R/blr-gains-table.R | 8 - R/blr-hosmer-lemeshow-test.R | 8 - R/blr-launch-app.R | 18 +++ R/blr-linktest.R | 4 R/blr-lorenz-curve.R | 3 R/blr-model-fit-stats.R | 8 - R/blr-pairs.R | 6 - R/blr-regress-compute.R | 20 --- R/blr-residual-diagnostics.R | 3 R/blr-roc-curve.R | 3 R/blr-stepwise-backward-regression.R | 13 -- R/blr-stepwise-forward-regression.R | 12 -- R/blr-stepwise-regression.R | 10 - R/blr-stepwise-selection.R | 8 - R/blr-utils.R | 23 ++++ R/zzz.R | 17 ++- README.md | 7 - build/vignette.rds |binary inst/application/logic/logic_dataoptions.R | 13 ++ inst/application/logic/logic_partition.R | 53 +++++++--- inst/application/logic/logic_screen.R | 2 inst/application/logic/logic_upload.R | 48 +++++---- inst/application/logic/logic_validation.R | 10 - inst/application/server.R | 5 inst/application/ui.R | 2 inst/application/ui/ui_bivar.R | 5 inst/application/ui/ui_datafiles.R | 58 +++++++++++ inst/doc/introduction.html | 31 ++--- man/blr_bivariate_analysis.Rd | 1 man/blr_confusion_matrix.Rd | 1 man/blr_decile_capture_rate.Rd | 1 man/blr_decile_lift_chart.Rd | 6 - man/blr_gains_table.Rd | 3 man/blr_gini_index.Rd | 4 man/blr_ks_chart.Rd | 7 - man/blr_linktest.Rd | 4 man/blr_lorenz_curve.Rd | 1 man/blr_model_fit_stats.Rd | 1 man/blr_multi_model_fit_stats.Rd | 1 man/blr_pairs.Rd | 7 - man/blr_plot_c_leverage.Rd | 4 man/blr_plot_deviance_fitted.Rd | 4 man/blr_plot_diag_fit.Rd | 3 man/blr_plot_diag_influence.Rd | 3 man/blr_plot_diag_leverage.Rd | 3 man/blr_plot_difchisq_leverage.Rd | 4 man/blr_plot_residual_fitted.Rd | 3 man/blr_roc_curve.Rd | 7 - man/blr_rsq_adj_count.Rd | 1 man/blr_rsq_count.Rd | 1 man/blr_rsq_cox_snell.Rd | 1 man/blr_rsq_effron.Rd | 1 man/blr_rsq_mcfadden.Rd | 4 man/blr_rsq_mcfadden_adj.Rd | 4 man/blr_rsq_mckelvey_zavoina.Rd | 1 man/blr_rsq_nagelkerke.Rd | 3 man/blr_segment.Rd | 1 man/blr_segment_dist.Rd | 6 - man/blr_segment_twoway.Rd | 4 man/blr_step_aic_backward.Rd | 1 man/blr_step_aic_both.Rd | 1 man/blr_step_aic_forward.Rd | 1 man/blr_step_p_backward.Rd | 5 man/blr_step_p_both.Rd | 1 man/blr_step_p_forward.Rd | 5 man/blr_test_hosmer_lemeshow.Rd | 1 man/blr_test_lr.Rd | 1 man/blr_woe_iv.Rd | 1 man/blr_woe_iv_stats.Rd | 1 76 files changed, 411 insertions(+), 350 deletions(-)
Title: Robust Regression with Data Driven Tuning Parameter
Description: Data driven approach for robust regression estimation in homoscedastic and heteroscedastic context. See Wang et al. (2007), <doi:10.1198/106186007X180156> regarding homoscedastic framework.
Author: You-Gan Wang <you-gan.wang@qut.edu.au>, Benoit Liquet <benoit.liquet@qut.edu.au>, Aurelien Callens <aurelien.callens@univ-pau.fr>
Maintainer: You-Gan Wang <you-gan.wang@qut.edu.au>
Diff between rlmDataDriven versions 0.2.0 dated 2019-02-13 and 0.2.1 dated 2019-03-12
DESCRIPTION | 11 +++++------ MD5 | 2 +- 2 files changed, 6 insertions(+), 7 deletions(-)
Title: Projection Predictive Feature Selection
Description: Performs projection predictive feature selection for generalized linear models
(see, Piironen, Paasiniemi and Vehtari, 2018, <arXiv:1810.02406>).
The package is compatible with the 'rstanarm' and 'brms' packages, but other
reference models can also be used. See the package vignette for more
information and examples.
Author: Juho Piironen [cre, aut],
Markus Paasiniemi [aut],
Aki Vehtari [aut],
Jonah Gabry [ctb],
Paul-Christian Bürkner [ctb]
Maintainer: Juho Piironen <juho@cai.fi>
Diff between projpred versions 1.1.0 dated 2018-10-23 and 1.1.1 dated 2019-03-12
DESCRIPTION | 10 MD5 | 44 +-- NEWS.md | 3 R/cv_varsel.R | 91 +++---- R/varsel.R | 121 ++++++---- build/vignette.rds |binary inst/doc/quickstart.R | 2 inst/doc/quickstart.html | 66 +++-- man/cv_varsel.Rd | 6 tests/testthat/test_datafit.R | 2 tests/testthat/test_varsel.R | 6 vignettes/quickstart_files/figure-html/unnamed-chunk-10-1.png |binary vignettes/quickstart_files/figure-html/unnamed-chunk-11-1.png |binary vignettes/quickstart_files/figure-html/unnamed-chunk-13-1.png |binary vignettes/quickstart_files/figure-html/unnamed-chunk-14-1.png |binary vignettes/quickstart_files/figure-html/unnamed-chunk-18-1.png |binary vignettes/quickstart_files/figure-html/unnamed-chunk-21-1.png |binary vignettes/quickstart_files/figure-html/unnamed-chunk-22-1.png |binary vignettes/quickstart_files/figure-html/unnamed-chunk-26-1.png |binary vignettes/quickstart_files/figure-html/unnamed-chunk-27-1.png |binary vignettes/quickstart_files/figure-html/unnamed-chunk-28-1.png |binary vignettes/quickstart_files/figure-html/unnamed-chunk-6-1.png |binary vignettes/quickstart_files/figure-html/unnamed-chunk-9-1.png |binary 23 files changed, 201 insertions(+), 150 deletions(-)
Title: Discrete Laplace Mixture Inference using the EM Algorithm
Description: Make inference in a mixture of discrete Laplace distributions using the EM algorithm. This can e.g. be used for modelling the distribution of Y chromosomal haplotypes as described in [1, 2] (refer to the URL section).
Author: Mikkel Meyer Andersen [aut, cre],
Poul Svante Eriksen [aut]
Maintainer: Mikkel Meyer Andersen <mikl@math.aau.dk>
Diff between disclapmix versions 1.7.2 dated 2019-01-09 and 1.7.3 dated 2019-03-12
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS | 4 ++++ inst/doc/introduction.html | 2 +- inst/doc/mixtures.html | 2 +- tests/testthat/test-disclapmix.R | 3 +++ tests/testthat/test-mixtures.R | 3 +++ 7 files changed, 21 insertions(+), 11 deletions(-)
Title: Tools for Managing SSH and Git Credentials
Description: Setup and retrieve HTTPS and SSH credentials for use with 'git' and
other services. For HTTPS remotes the package interfaces the 'git-credential'
utility which 'git' uses to store HTTP usernames and passwords. For SSH
remotes we provide convenient functions to find or generate appropriate SSH
keys. The package both helps the user to setup a local git installation, and
also provides a back-end for git/ssh client libraries to authenticate with
existing user credentials.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between credentials versions 1.0 dated 2019-03-05 and 1.1 dated 2019-03-12
DESCRIPTION | 8 +++++--- MD5 | 15 ++++++++------- NEWS |only R/credential-api.R | 4 ++-- inst/doc/intro.R | 15 +++++++++------ inst/doc/intro.Rmd | 25 ++++++++++++++----------- inst/doc/intro.html | 10 +++++----- man/credential_api.Rd | 4 ++-- vignettes/intro.Rmd | 25 ++++++++++++++----------- 9 files changed, 59 insertions(+), 47 deletions(-)
Title: Regression Standardization
Description: Contains functionality for regression standardization.
Four general classes of models are allowed; generalized linear models,
Conditional generalized estimating equation models,
Cox proportional hazards models and shared frailty gamma-Weibull models.
Author: Arvid Sjolander and Elisabeth Dahlqwist
Maintainer: Arvid Sjolander <arvid.sjolander@ki.se>
Diff between stdReg versions 3.0.0 dated 2018-02-22 and 3.1.0 dated 2019-03-12
DESCRIPTION | 8 MD5 | 19 NAMESPACE | 1 R/sourcecode.R | 2138 +++++++++++++++++++++++++++------------------------ build/partial.rdb |binary inst/NEWS.Rd |only man/parfrailty.rd | 5 man/stdCoxph.Rd | 2 man/stdGee.Rd | 2 man/stdGlm.Rd | 2 man/stdParfrailty.rd | 6 11 files changed, 1192 insertions(+), 991 deletions(-)
Title: Kaplan-Meier Plot with 'ggplot2'
Description: The function 'jskm()' creates publication quality Kaplan-Meier plot with at risk tables below. 'svyjskm()' provides plot for weighted Kaplan-Meier estimator.
Author: Jinseob Kim [aut, cre] (<https://orcid.org/0000-0002-9403-605X>),
Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jskm versions 0.3.0 dated 2019-02-15 and 0.3.1 dated 2019-03-12
DESCRIPTION | 12 ++++++------ MD5 | 16 ++++++++-------- NEWS.md | 8 ++++++++ R/jskm.R | 7 ++++++- R/svyjskm.R | 6 +++++- inst/doc/jskm.html | 4 ++-- man/jskm.Rd | 8 +++++--- man/svyjskm.Rd | 11 +++++++---- tests/testthat/test-km.R | 6 +++--- 9 files changed, 50 insertions(+), 28 deletions(-)
Title: Dataframe Difference Tool
Description: Functions for comparing two data.frames against
each other. The core functionality is to provide a detailed breakdown of any differences
between two data.frames as well as providing utility functions to help narrow down the
source of problems and differences.
Author: Craig Gower [cre, aut],
Kieran Martin [aut]
Maintainer: Craig Gower <craig.gower@roche.com>
Diff between diffdf versions 1.0.2 dated 2019-01-09 and 1.0.3 dated 2019-03-12
DESCRIPTION | 6 LICENSE | 4 MD5 | 144 +-- NAMESPACE | 18 NEWS.md | 34 R/ascii_tables.R | 386 ++++----- R/cast_variables.R | 346 ++++---- R/diffdf.R | 654 ++++++++-------- R/generate_keyname.R | 60 - R/identify.R | 592 +++++++------- R/is_different.R | 336 ++++---- R/issuerows.R | 212 ++--- R/issues.R | 138 +-- R/misc_functions.R | 100 +- R/print.R | 86 +- README.md | 104 +- build/vignette.rds |binary inst/doc/diffdf-basic.R | 241 +++--- inst/doc/diffdf-basic.Rmd | 421 +++++----- inst/doc/diffdf-basic.html | 955 ++++++++++++------------ man/as_ascii_table.Rd | 38 man/as_cropped_char.Rd | 34 man/cast_variables.Rd | 48 - man/class_merge.Rd | 28 man/compare_vectors.Rd | 36 man/compare_vectors.default.Rd | 36 man/compare_vectors.factor.Rd | 36 man/compare_vectors.numeric.Rd | 44 - man/construct_issue.Rd | 38 man/convert_to_issue.Rd | 28 man/diffdf.Rd | 184 ++-- man/diffdf_has_issues.Rd | 54 - man/diffdf_issuerows.Rd | 78 - man/factor_to_character.Rd | 34 man/find_difference.Rd | 42 - man/generate_keyname.Rd | 38 man/get_casted_dataset.Rd | 38 man/get_casted_vector.Rd | 36 man/get_issue_dataset.Rd | 36 man/get_issue_message.Rd | 32 man/get_print_message.Rd | 32 man/get_print_message.default.Rd | 28 man/get_print_message.issue.Rd | 28 man/get_table.Rd | 32 man/has_unique_rows.Rd | 32 man/identify_att_differences.Rd | 36 man/identify_class_differences.Rd | 32 man/identify_differences.Rd | 52 - man/identify_extra_cols.Rd | 32 man/identify_extra_rows.Rd | 36 man/identify_matching_cols.Rd | 36 man/identify_mode_differences.Rd | 32 man/identify_properties.Rd | 30 man/identify_unsupported_cols.Rd | 28 man/invert.Rd | 30 man/is_variable_different.Rd | 48 - man/print.diffdf.Rd | 50 - man/recursive_reduce.Rd | 46 - man/sort_then_join.Rd | 32 man/string_pad.Rd | 44 - tests/testthat.R | 12 tests/testthat/helper-create_test_data.R | 375 ++++----- tests/testthat/test-cast_variables.R | 98 +- tests/testthat/test-core.R | 888 +++++++++++----------- tests/testthat/test-dfdiff_has_issues.R | 158 +-- tests/testthat/test-find_difference.R | 86 +- tests/testthat/test-generate-keyname.R | 156 +-- tests/testthat/test-identify_att_differences.R | 144 +-- tests/testthat/test-identify_mode_differences.R | 464 +++++------ tests/testthat/test-issuerows.R | 304 +++---- tests/testthat/test-miscellaneous.R | 58 - tests/testthat/test-print_output.R | 178 ++-- vignettes/diffdf-basic.Rmd | 421 +++++----- 73 files changed, 4925 insertions(+), 4908 deletions(-)
Title: Instrumental Variables
Description: Contains tools for instrumental variables estimation. Currently, non-parametric bounds, two-stage estimation and G-estimation are implemented. Balke, A. and Pearl, J. (1997) <doi:10.2307/2965583>, Vansteelandt S., Bowden J., Babanezhad M., Goetghebeur E. (2011) <doi:10.1214/11-STS360>.
Author: Arvid Sjolander, Elisabeth Dahlqwist, Torben Martinussen
Maintainer: Arvid Sjolander <arvid.sjolander@ki.se>
Diff between ivtools versions 2.1.0 dated 2018-12-11 and 2.2.0 dated 2019-03-12
DESCRIPTION | 8 MD5 | 20 - NAMESPACE | 2 R/sourcecode.R | 1113 +++++++++++++++++++++++++++++++++++--------------------- man/VitD.Rd | 4 man/ah.Rd | 2 man/estfun.Rd | 10 man/ivah.Rd | 70 +-- man/ivbounds.Rd | 14 man/ivcoxph.Rd | 131 +++--- man/ivglm.Rd | 138 ++++-- 11 files changed, 926 insertions(+), 586 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-02 0.2.0
2018-09-17 0.1.0
Title: Custom Inputs Widgets for Shiny
Description: Collection of custom input controls and user interface components for 'Shiny' applications.
Give your applications a unique and colorful style !
Author: Victor Perrier [aut, cre],
Fanny Meyer [aut],
David Granjon [aut] (jQuery Knob shiny interface & sliders appearance),
Ian Fellows [ctb] (Methods for mutating vertical tabs &
updateMultiInput),
Wil Davis [ctb] (numericRangeInput function),
SnapAppointments [cph] (bootstrap-select),
Mattia Larentis [ctb, cph] (Bootstrap Switch),
Emanuele Marchi [ctb, cph] (Bootstrap Switch),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Flatlogic [cph] (Awesome Bootstrap Checkbox),
mouse0270 [ctb, cph] (Material Design Switch),
Tristan Edwards [ctb, cph] (SweetAlert),
Fabian Lindfors [ctb, cph] (multi.js),
Anthony Terrien [ctb, cph] (jQuery Knob),
Daniel Eden [ctb, cph] (animate.css),
Ganapati V S [ctb, cph] (bttn.css),
Brian Grinstead [ctb, cph] (Spectrum),
Lokesh Rajendran [ctb, cph] (pretty-checkbox),
Leon Gersen [ctb, cph] (wnumb & noUiSlider),
Timofey Marochkin [ctb, cph] (air-datepicker),
Tobias Ahlin [ctb, cph] (CSS spin)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between shinyWidgets versions 0.4.5 dated 2019-02-18 and 0.4.7 dated 2019-03-12
DESCRIPTION | 11 +- MD5 | 38 ++++---- NAMESPACE | 2 NEWS.md | 11 ++ R/input-dropdown.R | 8 + R/input-numericRange.R | 8 - R/input-pretty.R | 12 -- R/input-search.R | 2 R/setShadow.R | 150 +++++++++++++++++--------------- R/sw-dropdown.R | 2 R/useArgonDash.R |only R/useBs4Dash.R |only R/useShinydashboard.R | 3 README.md | 1 inst/www/searchInput/search-bindings.js | 13 +- inst/www/shinyWidgets-bindings.min.js | 2 man/dropdown.Rd | 2 man/dropdownButton.Rd | 5 - man/setShadow.Rd | 120 +++++++++++-------------- man/useArgonDash.Rd |only man/useBs4Dash.Rd |only tests/testthat/test-numericRange.R | 2 22 files changed, 200 insertions(+), 192 deletions(-)
Title: R Wrapper for the 'Spotify' Web API
Description: An R wrapper for pulling data from the 'Spotify' Web API
<http://developer.spotify.com/web-api> in bulk. It allows you to enter
an artist's name and retrieve their entire discography in seconds, along
with audio features and lyrics from Genius Lyrics <https://www.genius.com>.
You can also pull song and playlist information for a given 'Spotify' user.
Author: Charlie Thompson [aut, cre],
Josiah Parry [aut],
Donal Phipps [aut],
Tom Wolff [aut]
Maintainer: Charlie Thompson <chuck@rcharlie.com>
Diff between spotifyr versions 2.0.0 dated 2019-03-06 and 2.1.0 dated 2019-03-12
spotifyr-2.0.0/spotifyr/man/add_genius.Rd |only spotifyr-2.0.0/spotifyr/man/figures/README-unnamed-chunk-9-1.png |only spotifyr-2.0.0/spotifyr/man/gen_album_url.Rd |only spotifyr-2.0.0/spotifyr/man/gen_song_url.Rd |only spotifyr-2.0.0/spotifyr/man/genius_album.Rd |only spotifyr-2.0.0/spotifyr/man/genius_lyrics.Rd |only spotifyr-2.0.0/spotifyr/man/genius_tracklist.Rd |only spotifyr-2.0.0/spotifyr/man/genius_url.Rd |only spotifyr-2.0.0/spotifyr/man/prep_info.Rd |only spotifyr-2.1.0/spotifyr/DESCRIPTION | 8 spotifyr-2.1.0/spotifyr/MD5 | 28 spotifyr-2.1.0/spotifyr/NAMESPACE | 11 spotifyr-2.1.0/spotifyr/R/albums.R | 2 spotifyr-2.1.0/spotifyr/R/extensions.R | 82 ++ spotifyr-2.1.0/spotifyr/R/geniusR.R | 316 ---------- spotifyr-2.1.0/spotifyr/R/playlists.R | 1 spotifyr-2.1.0/spotifyr/R/spotifyr.R | 2 spotifyr-2.1.0/spotifyr/README.md | 87 +- spotifyr-2.1.0/spotifyr/man/figures/README-unnamed-chunk-10-1.png |only spotifyr-2.1.0/spotifyr/man/figures/spotifyr_auth_screenshot.png |only spotifyr-2.1.0/spotifyr/man/get_user_audio_features.Rd |only 21 files changed, 134 insertions(+), 403 deletions(-)
Title: Functions for Generating Restricted Permutations of Data
Description: A set of restricted permutation designs for freely exchangeable, line transects (time series), and spatial grid designs plus permutation of blocks (groups of samples) is provided. 'permute' also allows split-plot designs, in which the whole-plots or split-plots or both can be freely-exchangeable or one of the restricted designs. The 'permute' package is modelled after the permutation schemes of 'Canoco 3.1' (and later) by Cajo ter Braak.
Author: Gavin L. Simpson [aut, cph, cre]
(<https://orcid.org/0000-0002-9084-8413>),
R Core Team [cph],
Douglas M. Bates [ctb],
Jari Oksanen [ctb]
Maintainer: Gavin L. Simpson <ucfagls@gmail.com>
Diff between permute versions 0.9-4 dated 2016-09-09 and 0.9-5 dated 2019-03-12
DESCRIPTION | 14 ++++++++------ MD5 | 32 ++++++++++++++++---------------- R/check.R | 1 + R/shuffleSet.R | 8 ++++++++ build/vignette.rds |binary inst/doc/permutations.R | 9 +++++---- inst/doc/permutations.Rnw | 1 + inst/doc/permutations.pdf |binary man/how.Rd | 9 +++++++++ man/nobs.Rd | 2 ++ man/shuffle-utils.Rd | 1 + man/shuffle.Rd | 1 + man/shuffleSet.Rd | 2 ++ tests/Examples/permute-Ex.Rout.save | 22 +++++++++++++++++++--- tests/testthat/test-shuffle.R | 2 ++ tests/testthat/test-shuffleSet.R | 10 ++++++++++ vignettes/permutations.Rnw | 1 + 17 files changed, 86 insertions(+), 29 deletions(-)
Title: k-Nearest Neighbor Join for Spatial Data
Description: K-nearest neighbor search for projected and non-projected 'sf' spatial layers. Nearest neighbor search uses (1) C implementation of the Vincenty Formula for lon-lat point layers, (2) function nn2() from package 'RANN' for projected point layers, or (3) function st_distance() from package 'sf' for line or polygon layers.
Author: Michael Dorman [aut, cre],
Johnathan Rush [ctb],
Ian Hough [ctb],
Jan Antala [ctb, cph] (Author of C code for Vincenty distance)
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>
Diff between nngeo versions 0.2.4 dated 2018-12-06 and 0.2.7 dated 2019-03-12
DESCRIPTION | 11 ++++++----- MD5 | 14 +++++++++----- NAMESPACE | 2 ++ NEWS.md | 9 ++++++++- R/st_postgis.R |only R/st_segments.R |only build/vignette.rds |binary inst/doc/intro.pdf |binary man/st_postgis.Rd |only man/st_segments.Rd |only 10 files changed, 25 insertions(+), 11 deletions(-)
Title: MCMC, Particle Filtering, and Programmable Hierarchical Modeling
Description: A system for writing hierarchical statistical models largely compatible with 'BUGS' and 'JAGS', writing nimbleFunctions to operate models and do basic R-style math, and compiling both models and nimbleFunctions via custom-generated C++. 'NIMBLE' includes default methods for MCMC, particle filtering, Monte Carlo Expectation Maximization, and some other tools. The nimbleFunction system makes it easy to do things like implement new MCMC samplers from R, customize the assignment of samplers to different parts of a model from R, and compile the new samplers automatically via C++ alongside the samplers 'NIMBLE' provides. 'NIMBLE' extends the 'BUGS'/'JAGS' language by making it extensible: New distributions and functions can be added, including as calls to external compiled code. Although most people think of MCMC as the main goal of the 'BUGS'/'JAGS' language for writing models, one can use 'NIMBLE' for writing arbitrary other kinds of model-generic algorithms as well. A full User Manual is available at <https://r-nimble.org>.
Author: Perry de Valpine, Christopher Paciorek, Daniel Turek, Cliff Anderson-Bergman, Nick Michaud, Fritz Obermeyer, Claudia Wehrhahn Cortes, Abel Rodriguez, Duncan Temple Lang, and see AUTHORS file for additional contributors.
Maintainer: Christopher Paciorek <paciorek@stat.berkeley.edu>
Diff between nimble versions 0.7.0.1 dated 2019-03-01 and 0.7.1 dated 2019-03-12
DESCRIPTION | 9 INSTALL | 6 MD5 | 58 +- R/BNP_samplers.R | 14 R/BUGS_BUGSdecl.R | 1 R/BUGS_modelDef.R | 2 R/BUGS_readBUGS.R | 2 R/MCMC_conjugacy.R | 42 + R/cppDefs_utils.R | 2 R/distributions_processInputList.R | 16 R/initializeModel.R | 9 R/makevars.R | 14 configure | 31 - configure.ac | 42 - inst/CppCode/RcppUtils.cpp | 3 inst/CppCode/accessorClasses.cpp | 9 inst/NEWS | 30 + inst/include/Eigen/src/Core/arch/SSE/Complex.h | 2 inst/include/Eigen/src/Core/util/DisableStupidWarnings.h | 2 inst/include/nimble/NimArr.h | 384 ++++++++++++++- inst/include/nimble/NimArrBase.h | 4 inst/make/Makevars_lib.in | 7 inst/tests/test-bnp.R | 171 ++++++ inst/tests/test-copy.R | 210 +++++--- inst/tests/test-coreR.R | 101 +++ inst/tests/test-dynamicIndexing.R | 9 inst/tests/test-initializeModel.R | 44 + inst/tests/test-mcmc.R | 150 +++++ inst/tests/test-user.R | 205 +++----- src/Makevars.in | 2 30 files changed, 1298 insertions(+), 283 deletions(-)
Title: L-Moments
Description: Functions related to L-moments: computation of L-moments
and trimmed L-moments of distributions and data samples; parameter
estimation; L-moment ratio diagram; plot vs. quantiles of an
extreme-value distribution.
Author: J. R. M. Hosking
Maintainer: J. R. M. Hosking <jrmhosking@gmail.com>
Diff between lmom versions 2.7 dated 2019-03-10 and 2.8 dated 2019-03-12
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 2 +- R/lmom.r | 6 +++--- inst/lmom-manual.pdf |binary src/lmomc.c | 7 ++++--- 6 files changed, 17 insertions(+), 16 deletions(-)
Title: Heller-Heller-Gorfine Tests of Independence and Equality of
Distributions
Description: Heller-Heller-Gorfine tests are a set of powerful statistical
tests of multivariate k-sample homogeneity and independence (Heller et. al., 2013, <doi:10.1093/biomet/ass070>). For the univariate
case, the package also offers implementations of the 'MinP DDP' and 'MinP ADP'
tests by Heller et. al. (2016), which are consistent against all continuous alternatives but are
distribution-free, and are thus much faster to apply.
Author: Barak Brill & Shachar Kaufman, based in part on an earlier
implementation by Ruth Heller and Yair Heller.
Maintainer: Barak Brill <barakbri@mail.tau.ac.il>
Diff between HHG versions 2.3.1 dated 2019-01-30 and 2.3.2 dated 2019-03-12
DESCRIPTION | 8 MD5 | 74 NAMESPACE | 26 R/HHG.R | 444 +- R/HHGRCPP_API.r | 96 R/HHG_additional_univariate.R | 220 - R/HHG_extras.R | 200 - R/HHG_univariate.R | 4696 ++++++++++++++-------------- R/HHG_utils.R | 430 +- R/RcppExports.R | 38 README.md | 34 build/vignette.rds |binary configure.ac | 1 inst/doc/HHG.R | 1006 ++--- inst/doc/HHG.Rmd | 1494 ++++---- inst/doc/HHG.html | 1398 ++++---- man/Fast.independence.test.Rd | 308 - man/Fast.independence.test.nulltable.Rd | 214 - man/HHG-package.Rd | 350 +- man/Yeast_hughes.Rd | 52 man/hhg.example.datagen.Rd | 74 man/hhg.test.Rd | 352 +- man/hhg.univariate.ind.combined.test.Rd | 362 +- man/hhg.univariate.ind.nulltable.Rd | 194 - man/hhg.univariate.ind.pvalue.Rd | 228 - man/hhg.univariate.ind.stat.Rd | 300 - man/hhg.univariate.ks.combined.test.Rd | 366 +- man/hhg.univariate.ks.nulltable.Rd | 198 - man/hhg.univariate.ks.pvalue.Rd | 238 - man/hhg.univariate.ks.stat.Rd | 242 - man/hhg.univariate.nulltable.from.mstats.Rd | 426 +- man/nr_bins_equipartition.Rd | 62 man/print.HHG.Test.Result.Rd | 100 man/print.UnivariateObject.Rd | 72 man/print.UnivariateStatistic.Rd | 110 src/HHG.cpp | 9 vignettes/HHG.Rmd | 1494 ++++---- vignettes/style.css | 28 38 files changed, 7972 insertions(+), 7972 deletions(-)
Title: Accelerating 'ggplot2'
Description: The aim of 'ggplot2' is to aid in visual data investigations. This
focus has led to a lack of facilities for composing specialised plots.
'ggforce' aims to be a collection of mainly new stats and geoms that fills
this gap. All additional functionality is aimed to come through the official
extension system so using 'ggforce' should be a stable experience.
Author: Thomas Lin Pedersen [cre, aut]
(<https://orcid.org/0000-0002-5147-4711>),
RStudio [cph]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between ggforce versions 0.2.0 dated 2019-03-07 and 0.2.1 dated 2019-03-12
DESCRIPTION | 8 - MD5 | 18 +- NEWS.md | 6 R/mark_hull.R | 6 R/scale-unit.R | 16 -- R/utilities.R | 48 +++++++ R/voronoi.R | 38 +++-- README.md | 6 inst/doc/Visual_Guide.html | 290 ++++++++++++++++++++++----------------------- src/bSpline.cpp | 7 - 10 files changed, 254 insertions(+), 189 deletions(-)
Title: Algorithms for Finding Fixed Point Vectors of Functions
Description: For functions that take and return vectors (or scalars), this package provides 8 algorithms for finding fixed point vectors (vectors for which the inputs and outputs to the function are the same vector). These algorithms include Anderson (1965) acceleration <doi:10.1145/321296.321305>, epsilon extrapolation methods (Wynn 1962 <doi:10.2307/2004051>) and minimal polynomial methods (Cabay and Jackson 1976 <doi:10.1137/0713060>).
Author: Stuart Baumann & Margaryta Klymak
Maintainer: Stuart Baumann <Stuart@StuartBaumann.com>
Diff between FixedPoint versions 0.6 dated 2019-03-09 and 0.6.1 dated 2019-03-12
FixedPoint-0.6.1/FixedPoint/DESCRIPTION | 6 +++--- FixedPoint-0.6.1/FixedPoint/MD5 | 7 ++++--- FixedPoint-0.6.1/FixedPoint/build/vignette.rds |binary FixedPoint-0.6.1/FixedPoint/inst/doc/FixedPoint.pdf |only FixedPoint-0.6.1/FixedPoint/vignettes/FixedPoint.md |only FixedPoint-0.6/FixedPoint/inst/doc/FixedPoint.html |only 6 files changed, 7 insertions(+), 6 deletions(-)
Title: Tau-Leaping Stochastic Simulation
Description: Implements adaptive tau leaping to approximate the
trajectory of a continuous-time stochastic process as
described by Cao et al. (2007) The Journal of Chemical Physics
<doi:10.1063/1.2745299> (aka. the Gillespie stochastic
simulation algorithm). This package is based upon work
supported by NSF DBI-0906041 and NIH K99-GM104158 to Philip
Johnson and NIH R01-AI049334 to Rustom Antia.
Author: Philip Johnson
Maintainer: Philip Johnson <plfj@umd.edu>
Diff between adaptivetau versions 2.2-1 dated 2016-10-24 and 2.2-2 dated 2019-03-12
DESCRIPTION | 14 ++--- MD5 | 16 +++--- NEWS | 14 +++++ build/vignette.rds |binary inst/doc/adaptivetau.pdf |binary man/ssa.adaptivetau.Rd | 3 - man/ssa.exact.Rd | 2 src/Rwrappers.h | 77 +++++++++-------------------- src/adaptivetau.cpp | 124 +++++++++++++++++++++++++++-------------------- 9 files changed, 127 insertions(+), 123 deletions(-)
Title: Spatially Balanced Sampling
Description: Selection of spatially balanced samples. In particular, the implemented sampling designs allow to select probability samples spread over the population of interest, in any dimension and using any distance function (e.g. Euclidean distance, Manhattan distance). For more details, Benedetti R and Piersimoni F (2017) <doi:10.1002/bimj.201600194> and Benedetti R and Piersimoni F (2017) <arXiv:1710.09116>. The implementation has been done in C++ through the use of 'Rcpp' and 'RcppArmadillo'.
Author: Francesco Pantalone [aut, cre],
Roberto Benedetti [aut],
Federica Piersimoni [aut]
Maintainer: Francesco Pantalone <pantalone.fra@gmail.com>
Diff between Spbsampling versions 1.1.0 dated 2019-01-21 and 1.2.0 dated 2019-03-12
Spbsampling-1.1.0/Spbsampling/build |only Spbsampling-1.1.0/Spbsampling/src/heurprod.cpp |only Spbsampling-1.2.0/Spbsampling/DESCRIPTION | 9 - Spbsampling-1.2.0/Spbsampling/MD5 | 43 +++--- Spbsampling-1.2.0/Spbsampling/NEWS.md | 9 + Spbsampling-1.2.0/Spbsampling/R/RcppExports.R | 158 ++++++++++++++++------- Spbsampling-1.2.0/Spbsampling/R/Spbsampling.R | 16 +- Spbsampling-1.2.0/Spbsampling/R/data.R | 12 + Spbsampling-1.2.0/Spbsampling/man/Spbsampling.Rd | 16 +- Spbsampling-1.2.0/Spbsampling/man/hpwd.Rd | 38 +++-- Spbsampling-1.2.0/Spbsampling/man/pwd.Rd | 29 ++-- Spbsampling-1.2.0/Spbsampling/man/sbi.Rd | 19 +- Spbsampling-1.2.0/Spbsampling/man/simul1.Rd | 4 Spbsampling-1.2.0/Spbsampling/man/simul2.Rd | 4 Spbsampling-1.2.0/Spbsampling/man/simul3.Rd | 4 Spbsampling-1.2.0/Spbsampling/man/stprod.Rd | 24 ++- Spbsampling-1.2.0/Spbsampling/man/stsum.Rd | 23 ++- Spbsampling-1.2.0/Spbsampling/man/swd.Rd | 28 ++-- Spbsampling-1.2.0/Spbsampling/src/hpwd.cpp |only Spbsampling-1.2.0/Spbsampling/src/pwd.cpp | 42 +++--- Spbsampling-1.2.0/Spbsampling/src/sbi.cpp | 19 +- Spbsampling-1.2.0/Spbsampling/src/stprod.cpp | 23 ++- Spbsampling-1.2.0/Spbsampling/src/stsum.cpp | 22 ++- Spbsampling-1.2.0/Spbsampling/src/swd.cpp | 41 +++-- 24 files changed, 382 insertions(+), 201 deletions(-)
Title: The Unifed Distribution
Description: Probability functions and family for glm() of the unifed distribution (Quijano Xacur, 2018; <arXiv:1812.00251>).
Author: Oscar Alberto Quijano Xacur [aut,cre]
Maintainer: Oscar Alberto Quijano Xacur <oscar.quijano@use.startmail.com>
Diff between unifed versions 1.0.1 dated 2019-02-06 and 1.0.2 dated 2019-03-12
DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- R/unifed.deviance.R | 3 --- R/unifed.kappa.R | 9 ++------- README.md | 6 +++--- inst/doc/introduction_unifed.html | 4 ++-- man/unifed.deviance.Rd | 4 ---- man/unifed.kappa.Rd | 8 ++------ 8 files changed, 22 insertions(+), 38 deletions(-)
Title: Simplifies Pairwise Statistical Analyses
Description: Pairwise group comparisons are often performed. While there are many packages that can perform these analyses, often it is the case that only a subset of comparisons are desired. 'SimplifyStats' performs pairwise comparisons and returns the results in a tidy fashion.
Author: Zachary Colburn
Maintainer: Zachary Colburn <zcolburn@gmail.com>
Diff between SimplifyStats versions 1.0.1 dated 2018-07-02 and 2.0.2 dated 2019-03-12
SimplifyStats-1.0.1/SimplifyStats/man/print.group_summary.Rd |only SimplifyStats-1.0.1/SimplifyStats/man/print.pairwise_stats.Rd |only SimplifyStats-2.0.2/SimplifyStats/DESCRIPTION | 11 SimplifyStats-2.0.2/SimplifyStats/LICENSE |only SimplifyStats-2.0.2/SimplifyStats/MD5 | 33 SimplifyStats-2.0.2/SimplifyStats/NAMESPACE | 3 SimplifyStats-2.0.2/SimplifyStats/NEWS.md | 11 SimplifyStats-2.0.2/SimplifyStats/R/group_summarize.R | 99 -- SimplifyStats-2.0.2/SimplifyStats/R/pairwise_stats.R | 288 +++--- SimplifyStats-2.0.2/SimplifyStats/README.md | 1 SimplifyStats-2.0.2/SimplifyStats/build/vignette.rds |binary SimplifyStats-2.0.2/SimplifyStats/inst/doc/SimplifyStats_Vignette.R | 5 SimplifyStats-2.0.2/SimplifyStats/inst/doc/SimplifyStats_Vignette.Rmd | 9 SimplifyStats-2.0.2/SimplifyStats/inst/doc/SimplifyStats_Vignette.html | 454 ++-------- SimplifyStats-2.0.2/SimplifyStats/man/group_summarize.Rd | 8 SimplifyStats-2.0.2/SimplifyStats/man/pairwise_stats.Rd | 15 SimplifyStats-2.0.2/SimplifyStats/tests/testthat/test.group_summarize.R | 5 SimplifyStats-2.0.2/SimplifyStats/tests/testthat/test.pairwise_stats.R | 6 SimplifyStats-2.0.2/SimplifyStats/vignettes/SimplifyStats_Vignette.Rmd | 9 19 files changed, 362 insertions(+), 595 deletions(-)
Title: Chinese Text Segmentation
Description: Chinese text segmentation, keyword extraction and speech tagging
For R.
Author: Qin Wenfeng, Wu Yanyi
Maintainer: Qin Wenfeng <mail@qinwenfeng.com>
Diff between jiebaR versions 0.9.99 dated 2018-05-08 and 0.10.99 dated 2019-03-12
DESCRIPTION | 10 MD5 | 18 R/worker.R | 200 +++---- R/zzz.R | 17 build/vignette.rds |binary inst/doc/Quick_Start_Guide.html | 52 +- inst/include/jiebaR.h | 122 ++-- inst/include/jiebaRAPI.h | 826 ++++++++++++++++----------------- inst/include/lib/TextRankExtractor.hpp | 380 +++++++-------- man/worker.Rd | 101 ++-- 10 files changed, 878 insertions(+), 848 deletions(-)
Title: Imagine Your Data Before You Collect It
Description: Helps you imagine your data before you collect it. Hierarchical data structures
and correlated data can be easily simulated, either from random number generators or
by resampling from existing data sources. This package is faster with 'data.table' and
'mvnfast' installed.
Author: Graeme Blair [aut, cre],
Jasper Cooper [aut],
Alexander Coppock [aut],
Macartan Humphreys [aut],
Aaron Rudkin [aut],
Neal Fultz [aut]
Maintainer: Graeme Blair <graeme.blair@ucla.edu>
Diff between fabricatr versions 0.6.0 dated 2018-08-23 and 0.8.0 dated 2019-03-12
DESCRIPTION | 8 +++---- MD5 | 38 +++++++++++++++++----------------- NEWS.md | 4 +++ R/aaa_fabricate.R | 2 - R/correlate.R | 8 +++---- R/cross_classify_helpers.R | 2 - R/cross_levels.R | 2 - R/draw_normal_icc.R | 2 - R/helper_functions.R | 12 ++++------ R/variable_creation_functions.R | 24 ++++++++++----------- man/correlate.Rd | 8 +++---- man/draw_discrete.Rd | 20 ++++++++--------- man/draw_normal_icc.Rd | 2 - man/fabricate.Rd | 2 - man/join.Rd | 4 +-- man/recycle.Rd | 6 ++--- man/split_quantile.Rd | 4 +-- tests/testthat.R | 2 + tests/testthat/test-crossclassified.R | 1 tests/testthat/test-hierarchical.R | 10 ++++++++ 20 files changed, 88 insertions(+), 73 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-03-29 1.0.1
2016-02-21 1.0