Title: Weighted Mixed-Effects Models, using Multilevel Pseudo Maximum
Likelihood Estimation
Description: Run mixed-effects models that include weights at every level. The WeMix package fits a Weighted Mixed model, also known as a multilevel, mixed, or hierarchical linear model (HLM). The weights could be inverse selection probabilities, such as those developed for an education survey where schools are sampled probabilistically, and then students inside of those schools are sampled probabilistically. Although mixed-effects models are already available in R, WeMix is unique in implementing methods for mixed models using weights at multiple levels. The model is fit using adaptive quadrature.
Author: Paul Bailey, Claire Kelley, Trang Nguyen, Huade Huo.
Maintainer: Claire Kelley <ckelley@air.org>
Diff between WeMix versions 2.2.0 dated 2019-03-13 and 2.2.1 dated 2019-03-14
DESCRIPTION | 8 +- MD5 | 10 +-- NAMESPACE | 1 R/RcppExports.R | 1 R/drv.R | 122 --------------------------------------- inst/doc/WeightedMixedModels.pdf |binary 6 files changed, 10 insertions(+), 132 deletions(-)
Title: Wavelet Analysis
Description: Perform wavelet analysis (orthogonal, translation invariant, tensorial, 1-2-3d transforms, thresholding, block thresholding, linear,...) with applications to data compression or denoising/regression. The core of the code is a port of 'MATLAB' Wavelab toolbox written by D. Donoho, A. Maleki and M. Shahram (<https://statweb.stanford.edu/~wavelab/>).
Author: F. Navarro and C. Chesneau
Maintainer: Navarro Fabien <fabien.navarro@ensai.fr>
Diff between rwavelet versions 0.1.0 dated 2018-09-12 and 0.4.0 dated 2019-03-14
rwavelet-0.1.0/rwavelet/README.md |only rwavelet-0.1.0/rwavelet/inst/doc/readme_img |only rwavelet-0.4.0/rwavelet/DESCRIPTION | 16 rwavelet-0.4.0/rwavelet/MD5 | 134 - rwavelet-0.4.0/rwavelet/NAMESPACE | 16 rwavelet-0.4.0/rwavelet/NEWS.md |only rwavelet-0.4.0/rwavelet/R/BlockThresh.R |only rwavelet-0.4.0/rwavelet/R/CVlinear.R |only rwavelet-0.4.0/rwavelet/R/CircularShift.R |only rwavelet-0.4.0/rwavelet/R/DownDyadHi.R | 6 rwavelet-0.4.0/rwavelet/R/DownDyadLo.R | 6 rwavelet-0.4.0/rwavelet/R/FTWT2_PO.R |only rwavelet-0.4.0/rwavelet/R/FWT2_PO.R | 17 rwavelet-0.4.0/rwavelet/R/FWT2_TI.R |only rwavelet-0.4.0/rwavelet/R/FWT3_PO.R |only rwavelet-0.4.0/rwavelet/R/FWT_PO.R | 7 rwavelet-0.4.0/rwavelet/R/FWT_TI.R | 6 rwavelet-0.4.0/rwavelet/R/GWN.R | 7 rwavelet-0.4.0/rwavelet/R/HardThresh.R | 16 rwavelet-0.4.0/rwavelet/R/ITWT2_PO.R |only rwavelet-0.4.0/rwavelet/R/IWT2_PO.R | 14 rwavelet-0.4.0/rwavelet/R/IWT2_TI.R |only rwavelet-0.4.0/rwavelet/R/IWT3_PO.R |only rwavelet-0.4.0/rwavelet/R/IWT_PO.R | 6 rwavelet-0.4.0/rwavelet/R/IWT_TI.R | 3 rwavelet-0.4.0/rwavelet/R/MAD.R | 4 rwavelet-0.4.0/rwavelet/R/MakeONFilter.R | 9 rwavelet-0.4.0/rwavelet/R/MakeSignal.R | 143 - rwavelet-0.4.0/rwavelet/R/MakeSignalNewb.R |only rwavelet-0.4.0/rwavelet/R/MirrorFilt.R | 10 rwavelet-0.4.0/rwavelet/R/PlotSpikes.R | 10 rwavelet-0.4.0/rwavelet/R/PlotWaveCoeff.R | 9 rwavelet-0.4.0/rwavelet/R/SLphantom.R |only rwavelet-0.4.0/rwavelet/R/SNR.R | 9 rwavelet-0.4.0/rwavelet/R/SoftThresh.R | 16 rwavelet-0.4.0/rwavelet/R/UpDyadHi.R | 7 rwavelet-0.4.0/rwavelet/R/UpDyadLo.R | 6 rwavelet-0.4.0/rwavelet/R/UpSampleN.R | 6 rwavelet-0.4.0/rwavelet/R/aconv.R | 6 rwavelet-0.4.0/rwavelet/R/block_partition.R |only rwavelet-0.4.0/rwavelet/R/block_partition2d.R |only rwavelet-0.4.0/rwavelet/R/cubelength.R |only rwavelet-0.4.0/rwavelet/R/dyad.R | 6 rwavelet-0.4.0/rwavelet/R/dyadlength.R | 6 rwavelet-0.4.0/rwavelet/R/iconvv.R | 6 rwavelet-0.4.0/rwavelet/R/invblock_partition.R |only rwavelet-0.4.0/rwavelet/R/invblock_partition2d.R |only rwavelet-0.4.0/rwavelet/R/lshift.R | 6 rwavelet-0.4.0/rwavelet/R/packet.R | 10 rwavelet-0.4.0/rwavelet/R/quadlength.R | 12 rwavelet-0.4.0/rwavelet/R/repmat.R |only rwavelet-0.4.0/rwavelet/R/rshift.R | 7 rwavelet-0.4.0/rwavelet/build/vignette.rds |binary rwavelet-0.4.0/rwavelet/data/SLphantom.rda |only rwavelet-0.4.0/rwavelet/inst/doc/rwaveletvignette.R | 85 rwavelet-0.4.0/rwavelet/inst/doc/rwaveletvignette.Rmd | 103 + rwavelet-0.4.0/rwavelet/inst/doc/rwaveletvignette.html | 1460 ++++++++++++++++- rwavelet-0.4.0/rwavelet/man/BlockThresh.Rd |only rwavelet-0.4.0/rwavelet/man/CVlinear.Rd |only rwavelet-0.4.0/rwavelet/man/CircularShift.Rd |only rwavelet-0.4.0/rwavelet/man/FTWT2_PO.Rd |only rwavelet-0.4.0/rwavelet/man/FWT2_PO.Rd | 11 rwavelet-0.4.0/rwavelet/man/FWT2_TI.Rd |only rwavelet-0.4.0/rwavelet/man/FWT3_PO.Rd |only rwavelet-0.4.0/rwavelet/man/HardThresh.Rd | 10 rwavelet-0.4.0/rwavelet/man/ITWT2_PO.Rd |only rwavelet-0.4.0/rwavelet/man/IWT2_PO.Rd | 8 rwavelet-0.4.0/rwavelet/man/IWT2_TI.Rd |only rwavelet-0.4.0/rwavelet/man/IWT3_PO.Rd |only rwavelet-0.4.0/rwavelet/man/IWT_TI.Rd | 4 rwavelet-0.4.0/rwavelet/man/MakeSignal.Rd | 4 rwavelet-0.4.0/rwavelet/man/MakeSignalNewb.Rd |only rwavelet-0.4.0/rwavelet/man/MirrorFilt.Rd | 2 rwavelet-0.4.0/rwavelet/man/PlotSpikes.Rd | 2 rwavelet-0.4.0/rwavelet/man/SLphantom.Rd |only rwavelet-0.4.0/rwavelet/man/SNR.Rd | 2 rwavelet-0.4.0/rwavelet/man/SoftThresh.Rd | 10 rwavelet-0.4.0/rwavelet/man/block_partition.Rd |only rwavelet-0.4.0/rwavelet/man/block_partition2d.Rd |only rwavelet-0.4.0/rwavelet/man/cubelength.Rd |only rwavelet-0.4.0/rwavelet/man/invblock_partition.Rd |only rwavelet-0.4.0/rwavelet/man/invblock_partition2d.Rd |only rwavelet-0.4.0/rwavelet/man/packet.Rd | 4 rwavelet-0.4.0/rwavelet/man/quadlength.Rd | 2 rwavelet-0.4.0/rwavelet/man/repmat.Rd |only rwavelet-0.4.0/rwavelet/man/rshift.Rd | 2 rwavelet-0.4.0/rwavelet/vignettes/rwaveletvignette.Rmd | 103 + 87 files changed, 2094 insertions(+), 260 deletions(-)
Title: Extensible, Parallelizable Implementation of the Random Forest
Algorithm
Description: Scalable implementation of classification and regression forests, as described by Breiman (2001), <DOI:10.1023/A:1010933404324>.
Author: Mark Seligman
Maintainer: Mark Seligman <mseligman@suiji.org>
Diff between Rborist versions 0.1-14 dated 2019-03-12 and 0.1-15 dated 2019-03-14
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- build/vignette.rds |binary src/pretree.cc | 2 +- 4 files changed, 9 insertions(+), 9 deletions(-)
Title: Long Term Water Quality Trend Analysis
Description: Enable users to evaluate long-term trends using a Generalized
Additive Modeling (GAM) approach. The model development includes selecting a
GAM structure to describe nonlinear seasonally-varying changes over time,
incorporation of hydrologic variability via either a river flow or salinity,
the use of an intervention to deal with method or laboratory changes
suspected to impact data values, and representation of left- and
interval-censored data. The approach has been applied to water quality data
in the Chesapeake Bay, a major estuary on the east coast of the United
States to provide insights to a range of management- and research-focused
questions.
Author: Rebecca Murphy, Elgin Perry, Jennifer Keisman, Jon Harcum, Erik W Leppo
Maintainer: Erik Leppo <Erik.Leppo@tetratech.com>
Diff between baytrends versions 1.0.7 dated 2018-07-19 and 1.1.0 dated 2019-03-14
baytrends-1.0.7/baytrends/inst/extdata/baytrends_LibraryCreation.R |only baytrends-1.0.7/baytrends/inst/extdata/baytrends_LibraryCreation.Rmd |only baytrends-1.0.7/baytrends/inst/extdata/baytrends_LibraryCreation.nb.html |only baytrends-1.1.0/baytrends/DESCRIPTION | 26 - baytrends-1.1.0/baytrends/MD5 | 191 ++++++---- baytrends-1.1.0/baytrends/NAMESPACE | 7 baytrends-1.1.0/baytrends/NEWS | 103 +++++ baytrends-1.1.0/baytrends/R/analysisOrganizeData.R | 42 -- baytrends-1.1.0/baytrends/R/appendDateFeatures.R | 28 - baytrends-1.1.0/baytrends/R/checkRange.R | 1 baytrends-1.1.0/baytrends/R/chkParameter.R | 1 baytrends-1.1.0/baytrends/R/closeOut.R | 2 baytrends-1.1.0/baytrends/R/createResiduals.R |only baytrends-1.1.0/baytrends/R/expectMaxFunctions.r | 66 ++- baytrends-1.1.0/baytrends/R/findFile.R | 10 baytrends-1.1.0/baytrends/R/fmtPval.R | 1 baytrends-1.1.0/baytrends/R/gamDiff.R | 12 baytrends-1.1.0/baytrends/R/gamPlotCalc.r | 49 ++ baytrends-1.1.0/baytrends/R/gamPlotDisp.R | 11 baytrends-1.1.0/baytrends/R/gamTables.R | 14 baytrends-1.1.0/baytrends/R/gamTest.r | 43 +- baytrends-1.1.0/baytrends/R/headers2.R | 21 - baytrends-1.1.0/baytrends/R/imputeCensored.R | 8 baytrends-1.1.0/baytrends/R/initializeResults.r | 1 baytrends-1.1.0/baytrends/R/layerAggregation.R | 3 baytrends-1.1.0/baytrends/R/loadModels.R |only baytrends-1.1.0/baytrends/R/loadModelsResid.R |only baytrends-1.1.0/baytrends/R/mergeFlow.R | 1 baytrends-1.1.0/baytrends/R/mergeSalinity.R | 1 baytrends-1.1.0/baytrends/R/reAttDF.R | 1 baytrends-1.1.0/baytrends/R/zzz.R | 5 baytrends-1.1.0/baytrends/build/vignette.rds |binary baytrends-1.1.0/baytrends/inst/doc/create_Seasonally_Detrended_Flow_and_Salinity_Data_Sets.Rmd | 2 baytrends-1.1.0/baytrends/inst/doc/create_Seasonally_Detrended_Flow_and_Salinity_Data_Sets.html | 38 + baytrends-1.1.0/baytrends/inst/doc/vignette_qw.Rmd | 2 baytrends-1.1.0/baytrends/inst/doc/vignette_qw.html | 28 + baytrends-1.1.0/baytrends/man/as.character.lcens.Rd | 2 baytrends-1.1.0/baytrends/man/as.data.frame.Rd | 10 baytrends-1.1.0/baytrends/man/as.lcens.Rd | 9 baytrends-1.1.0/baytrends/man/as.mcens.Rd | 18 baytrends-1.1.0/baytrends/man/as.qw.Rd | 8 baytrends-1.1.0/baytrends/man/c.Rd | 2 baytrends-1.1.0/baytrends/man/censorLevels.Rd | 4 baytrends-1.1.0/baytrends/man/censoring.Rd | 4 baytrends-1.1.0/baytrends/man/censpp.Rd | 3 baytrends-1.1.0/baytrends/man/colorPlot.Rd | 37 - 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baytrends-1.1.0/baytrends/vignettes/.install_extras |only baytrends-1.1.0/baytrends/vignettes/baytrends_overview.pdf |only baytrends-1.1.0/baytrends/vignettes/create_Seasonally_Detrended_Flow_and_Salinity_Data_Sets.Rmd | 2 baytrends-1.1.0/baytrends/vignettes/statgam_and_chnggam_output_fields.pdf |only baytrends-1.1.0/baytrends/vignettes/vignette_qw.Rmd | 2 120 files changed, 661 insertions(+), 373 deletions(-)
Title: Record Linkage in R
Description: Provides functions for linking and de-duplicating data sets.
Methods based on a stochastic approach are implemented as well as
classification algorithms from the machine learning domain.
Author: Andreas Borg <andreas.borg.public@posteo.de>, Murat Sariyar <murat.sariyar@charite.de>
Maintainer: Andreas Borg <andreas.borg.public@posteo.de>
Diff between RecordLinkage versions 0.4-10.2 dated 2019-03-04 and 0.4-11 dated 2019-03-14
DESCRIPTION | 12 ++++++------ MD5 | 29 +++++++++++++++-------------- NAMESPACE | 2 +- NEWS | 5 +++++ R/compare.r | 2 +- R/mygllm.r | 2 +- R/phonetics.r | 4 ++-- R/strcmp.r | 4 ++-- build/vignette.rds |binary inst/doc/BigData.pdf |binary inst/doc/EVT.pdf |binary inst/doc/Supervised.pdf |binary inst/doc/WeightBased.pdf |binary man/mygllm.Rd | 2 +- src/phonet.c | 7 +++++-- src/recordlinkage_init.c |only 16 files changed, 39 insertions(+), 30 deletions(-)
Title: Longitudinal Cascade
Description: Creates a series of set of graphics and statistics related to the longitudinal cascade, all included in a single object. The longitudinal cascade inputs longitudinal data to identify gaps in the HIV and related cascades by observing differences using time to event and survival methods. The stage definitions are set by the user, with default standard options. Outputs include graphics, datasets, and formal statistical tests.
Author: Noah Haber [aut, cre]
Maintainer: Noah Haber <noahhaber@gmail.com>
Diff between longitudinalcascade versions 0.1.1.1 dated 2019-01-09 and 0.1.2.1 dated 2019-03-14
DESCRIPTION | 6 - MD5 | 6 - R/longitudinalcascade.R | 205 ++++++++++++++++++++++++++++++--------------- man/longitudinalcascade.Rd | 11 +- 4 files changed, 155 insertions(+), 73 deletions(-)
More information about longitudinalcascade at CRAN
Permanent link
Title: Manipulate and Explore UK Biobank Data
Description: A set of tools to create a UK Biobank <http://www.ukbiobank.ac.uk/> dataset from a UKB fileset (.tab, .r, .html),
visualize primary demographic data for a sample subset, query ICD diagnoses,
retrieve genetic metadata, read and write standard file formats for genetic analyses.
Author: Ken Hanscombe [aut, cre]
Maintainer: Ken Hanscombe <ken.hanscombe@gmail.com>
Diff between ukbtools versions 0.11.0 dated 2018-05-23 and 0.11.1 dated 2019-03-14
ukbtools-0.11.0/ukbtools/R/sysdata.rda |only ukbtools-0.11.1/ukbtools/DESCRIPTION | 14 ukbtools-0.11.1/ukbtools/MD5 | 48 +- ukbtools-0.11.1/ukbtools/NAMESPACE | 8 ukbtools-0.11.1/ukbtools/NEWS.md | 25 - ukbtools-0.11.1/ukbtools/R/context.R | 64 +- ukbtools-0.11.1/ukbtools/R/diagnosis.R | 147 +++--- ukbtools-0.11.1/ukbtools/R/genetics_qc.R | 43 - ukbtools-0.11.1/ukbtools/R/ukb_dataset.R | 20 ukbtools-0.11.1/ukbtools/R/ukbtools.R |only ukbtools-0.11.1/ukbtools/README.md | 26 - ukbtools-0.11.1/ukbtools/build/vignette.rds |binary ukbtools-0.11.1/ukbtools/inst/CITATION |only ukbtools-0.11.1/ukbtools/inst/doc/explore-ukb-data.R | 102 +--- ukbtools-0.11.1/ukbtools/inst/doc/explore-ukb-data.Rmd | 317 +++++++------- ukbtools-0.11.1/ukbtools/inst/doc/explore-ukb-data.html | 269 +++++++---- ukbtools-0.11.1/ukbtools/inst/extdata |only ukbtools-0.11.1/ukbtools/man/figures |only ukbtools-0.11.1/ukbtools/man/ukb_context.Rd | 2 ukbtools-0.11.1/ukbtools/man/ukb_df.Rd | 13 ukbtools-0.11.1/ukbtools/man/ukb_gen_read_fam.Rd | 4 ukbtools-0.11.1/ukbtools/man/ukb_gen_samples_to_remove.Rd | 4 ukbtools-0.11.1/ukbtools/man/ukb_icd_freq_by.Rd | 21 ukbtools-0.11.1/ukbtools/man/ukbtools.Rd |only ukbtools-0.11.1/ukbtools/vignettes/explore-ukb-data.Rmd | 317 +++++++------- ukbtools-0.11.1/ukbtools/vignettes/img |only 26 files changed, 793 insertions(+), 651 deletions(-)
Title: Interface for MOA Stream Clustering Algorithms
Description: Interface for data stream clustering algorithms implemented in the MOA (Massive Online Analysis) framework (Albert Bifet, Geoff Holmes, Richard Kirkby, Bernhard Pfahringer (2010). MOA: Massive Online Analysis, Journal of Machine Learning Research 11: 1601-1604).
Author: Michael Hahsler [aut, cre, cph],
John Forrest [aut, cph],
Matthew Bolanos [ctb],
Matthias Carnein [ctb]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between streamMOA versions 1.1-4 dated 2018-04-07 and 1.2-0 dated 2019-03-14
DESCRIPTION | 20 ++-- MD5 | 52 ++++++----- NAMESPACE | 11 ++ NEWS.md | 5 + R/DSC_BICO_MOA.R |only R/DSC_CluStream.R | 2 R/DSC_ClusTree.R | 8 + R/DSC_DStream_MOA.R |only R/DSC_DenStream.R | 2 R/DSC_MOA.R | 62 ++++++------- R/DSC_streamkm.R |only R/DSD_MOA.R | 22 ++-- R/DSD_RandomRBFGeneratorEvents.R | 20 ++-- build/vignette.rds |binary inst/doc/streamMOA.R | 62 ++++++------- inst/doc/streamMOA.Rnw | 178 +++++++++++++++++++-------------------- inst/doc/streamMOA.pdf |binary inst/java/StreamMOA.jar |binary inst/java/moa.jar |binary java/Makefile | 2 java/StreamMOA.java | 24 +++++ man/DSC_BICO_MOA.Rd |only man/DSC_CluStream.Rd | 10 +- man/DSC_ClusTree.Rd | 26 ++--- man/DSC_DStream_MOA.Rd |only man/DSC_DenStream.Rd | 9 + man/DSC_MOA.Rd | 5 - man/DSC_streamkm.Rd |only vignettes/head.tex | 53 +++++------ vignettes/streamMOA.Rnw | 178 +++++++++++++++++++-------------------- 30 files changed, 403 insertions(+), 348 deletions(-)
Title: Compute, Handle, Plot and Model Incidence of Dated Events
Description: Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. In addition, log-linear models can be fitted to 'incidence' objects using 'fit'. This package is part of the RECON (<http://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.
Author: Thibaut Jombart [aut],
Zhian N. Kamvar [aut, cre] (<https://orcid.org/0000-0003-1458-7108>),
Rich FitzJohn [aut],
Jun Cai [ctb] (<https://orcid.org/0000-0001-9495-1226>),
Sangeeta Bhatia [ctb],
Jakob Schumacher [ctb],
Juliet R.C. Pulliam [ctb] (<https://orcid.org/0000-0003-3314-8223>)
Maintainer: Zhian N. Kamvar <zkamvar@gmail.com>
Diff between incidence versions 1.5.4 dated 2019-01-15 and 1.7.0 dated 2019-03-14
incidence-1.5.4/incidence/tests/testthat/rds/ref_date_breaks_iso.rds |only incidence-1.7.0/incidence/DESCRIPTION | 14 incidence-1.7.0/incidence/MD5 | 95 +-- incidence-1.7.0/incidence/NAMESPACE | 2 incidence-1.7.0/incidence/NEWS.md | 61 ++ incidence-1.7.0/incidence/R/check_interval.R | 4 incidence-1.7.0/incidence/R/check_week.R | 2 incidence-1.7.0/incidence/R/conversion.R | 33 - incidence-1.7.0/incidence/R/get_interval.R | 47 + incidence-1.7.0/incidence/R/get_week.R |only incidence-1.7.0/incidence/R/incidence.R | 140 ++++- incidence-1.7.0/incidence/R/internals.R | 13 incidence-1.7.0/incidence/R/make_breaks.R | 33 - incidence-1.7.0/incidence/R/make_incidence.R | 23 incidence-1.7.0/incidence/R/plot.R | 141 ++--- incidence-1.7.0/incidence/R/print.R | 9 incidence-1.7.0/incidence/R/scale_x_incidence.R |only incidence-1.7.0/incidence/R/subset.R | 3 incidence-1.7.0/incidence/R/valid_interval.R | 13 incidence-1.7.0/incidence/R/zzz.R | 3 incidence-1.7.0/incidence/build/vignette.rds |binary incidence-1.7.0/incidence/inst/CITATION |only incidence-1.7.0/incidence/inst/doc/conversions.R | 6 incidence-1.7.0/incidence/inst/doc/conversions.Rmd | 15 incidence-1.7.0/incidence/inst/doc/conversions.html | 257 +++++----- incidence-1.7.0/incidence/inst/doc/customize_plot.R | 34 + incidence-1.7.0/incidence/inst/doc/customize_plot.Rmd | 80 ++- incidence-1.7.0/incidence/inst/doc/customize_plot.html | 153 +++-- incidence-1.7.0/incidence/inst/doc/incidence_class.R | 9 incidence-1.7.0/incidence/inst/doc/incidence_class.Rmd | 28 - incidence-1.7.0/incidence/inst/doc/incidence_class.html | 82 +-- incidence-1.7.0/incidence/inst/doc/incidence_fit_class.html | 30 - incidence-1.7.0/incidence/inst/doc/overview.R | 16 incidence-1.7.0/incidence/inst/doc/overview.Rmd | 92 ++- incidence-1.7.0/incidence/inst/doc/overview.html | 69 +- incidence-1.7.0/incidence/man/conversions.Rd | 8 incidence-1.7.0/incidence/man/incidence.Rd | 117 +++- incidence-1.7.0/incidence/man/plot.incidence.Rd | 69 ++ incidence-1.7.0/incidence/tests/testthat/data_cache |only incidence-1.7.0/incidence/tests/testthat/rds/y.sub1.rds |binary incidence-1.7.0/incidence/tests/testthat/test-conversions.R | 89 +++ incidence-1.7.0/incidence/tests/testthat/test-fit.R | 12 incidence-1.7.0/incidence/tests/testthat/test-incidence.R | 60 +- incidence-1.7.0/incidence/tests/testthat/test-non-exported.R | 10 incidence-1.7.0/incidence/tests/testthat/test-plot.R | 121 ++++ incidence-1.7.0/incidence/tests/testthat/test-standards.R |only incidence-1.7.0/incidence/tests/testthat/test-subset.R | 28 - incidence-1.7.0/incidence/vignettes/conversions.Rmd | 15 incidence-1.7.0/incidence/vignettes/customize_plot.Rmd | 80 ++- incidence-1.7.0/incidence/vignettes/incidence_class.Rmd | 28 - incidence-1.7.0/incidence/vignettes/overview.Rmd | 92 ++- 51 files changed, 1492 insertions(+), 744 deletions(-)
Title: Interface to the CIMIS Web API
Description: Connect to the California Irrigation Management
Information System (CIMIS) Web API. See the CIMIS main page
<https://cimis.water.ca.gov/> and web API documentation
<https://et.water.ca.gov> for more information.
Author: Michael Koohafkan [aut, cre]
Maintainer: Michael Koohafkan <michael.koohafkan@gmail.com>
Diff between cimir versions 0.1-0 dated 2019-01-04 and 0.2-0 dated 2019-03-14
cimir-0.1-0/cimir/inst/doc/quickstart.rmd |only cimir-0.1-0/cimir/man/data_items.Rd |only cimir-0.1-0/cimir/man/get_data.Rd |only cimir-0.1-0/cimir/man/get_station.Rd |only cimir-0.1-0/cimir/man/to_datetime.Rd |only cimir-0.1-0/cimir/vignettes/quickstart.rmd |only cimir-0.2-0/cimir/DESCRIPTION | 14 ++-- cimir-0.2-0/cimir/MD5 | 32 +++++----- cimir-0.2-0/cimir/NAMESPACE | 7 ++ cimir-0.2-0/cimir/R/deprecated.r |only cimir-0.2-0/cimir/R/package.r | 6 - cimir-0.2-0/cimir/R/query.r | 88 ++++++++++++++++++----------- cimir-0.2-0/cimir/R/util.r | 16 ++--- cimir-0.2-0/cimir/build/vignette.rds |binary cimir-0.2-0/cimir/inst/doc/quickstart.Rmd |only cimir-0.2-0/cimir/inst/doc/quickstart.html | 51 +++++++++++----- cimir-0.2-0/cimir/man/cimir-deprecated.Rd |only cimir-0.2-0/cimir/man/cimir.Rd | 4 - cimir-0.2-0/cimir/man/cimir_handle.Rd |only cimir-0.2-0/cimir/man/cimis_data.Rd |only cimir-0.2-0/cimir/man/cimis_items.Rd |only cimir-0.2-0/cimir/man/cimis_station.Rd |only cimir-0.2-0/cimir/man/cimis_to_datetime.Rd |only cimir-0.2-0/cimir/man/dataitems.Rd |only cimir-0.2-0/cimir/vignettes/quickstart.Rmd |only 25 files changed, 134 insertions(+), 84 deletions(-)
Title: Regression Standardization
Description: Contains functionality for regression standardization.
Four general classes of models are allowed; generalized linear models,
Conditional generalized estimating equation models,
Cox proportional hazards models and shared frailty gamma-Weibull models. Sjolander, A. (2016) <doi:10.1007/s10654-016-0157-3>.
Author: Arvid Sjolander and Elisabeth Dahlqwist
Maintainer: Arvid Sjolander <arvid.sjolander@ki.se>
Diff between stdReg versions 3.1.0 dated 2019-03-12 and 3.2.0 dated 2019-03-14
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- build/partial.rdb |binary inst/NEWS.Rd | 2 +- man/stdCoxph.Rd | 7 +++++++ man/stdGlm.Rd | 7 +++++++ 6 files changed, 25 insertions(+), 11 deletions(-)
Title: R Interface to the 'UNU.RAN' Random Variate Generators
Description: Interface to the 'UNU.RAN' library for Universal Non-Uniform RANdom variate generators.
Thus it allows to build non-uniform random number generators from quite arbitrary
distributions. In particular, it provides an algorithm for fast numerical inversion
for distribution with given density function.
In addition, the package contains densities, distribution functions and quantiles
from a couple of distributions.
Author: Josef Leydold [aut, cre],
Wolfgang H"ormann [aut]
Maintainer: Josef Leydold <josef.leydold@wu.ac.at>
Diff between Runuran versions 0.26 dated 2019-03-12 and 0.27 dated 2019-03-14
Runuran-0.26/Runuran/tests/test_details.Rout.save |only Runuran-0.27/Runuran/DESCRIPTION | 8 +++---- Runuran-0.27/Runuran/MD5 | 12 +++++------ Runuran-0.27/Runuran/THANKS |only Runuran-0.27/Runuran/inst/doc/Runuran.pdf |binary Runuran-0.27/Runuran/man/Runuran-package.Rd | 4 +-- Runuran-0.27/Runuran/src/performance.c | 24 +++------------------- Runuran-0.27/Runuran/vignettes/inputs/version.tex | 2 - 8 files changed, 17 insertions(+), 33 deletions(-)
Title: Import Origin(R) Project Files
Description: Read the data from Origin(R) project files ('*.opj')
<https://www.originlab.com/doc/User-Guide/Origin-File-Types>.
No write support is planned. More object types may be available
to be imported later.
Author: Miquel Garriga [aut, cph],
Stefan Gerlach [aut, cph],
Ion Vasilief [aut, cph],
Alex Kargovsky [aut, cph],
Knut Franke [ctb, cph],
Alexander Semke [ctb, cph],
Tilman Benkert [ctb, cph],
Kasper Peeters [ctb, cph],
Russell Standish [ctb, cph],
Ivan Krylov [cre, cph]
Maintainer: Ivan Krylov <krylov.r00t@gmail.com>
Diff between Ropj versions 0.2-1 dated 2019-03-03 and 0.2-2 dated 2019-03-14
DESCRIPTION | 8 +-- MD5 | 12 ++-- NEWS | 7 ++ TODO | 12 ---- build/partial.rdb |binary src/liborigin/OriginAnyParser.cpp | 5 +- src/read_opj.cpp | 92 +++++++++++++++++++++++++------------- 7 files changed, 83 insertions(+), 53 deletions(-)
Title: Multiply Robust Methods for Missing Data Problems
Description: Multiply robust estimation for population mean (Han and Wang 2013) <doi:10.1093/biomet/ass087>, regression analysis (Han 2014) <doi:10.1080/01621459.2014.880058> (Han 2016) <doi:10.1111/sjos.12177> and quantile regression (Han et al. 2019) <doi:10.1111/rssb.12309>.
Author: Shixiao Zhang and Peisong Han
Maintainer: Shixiao Zhang <praetere@gmail.com>
Diff between MultiRobust versions 1.0.1 dated 2019-03-13 and 1.0.2 dated 2019-03-14
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/ext.names.r | 16 ++++++++++------ 3 files changed, 15 insertions(+), 11 deletions(-)
Title: Gaussian Mixture Modelling for Model-Based Clustering,
Classification, and Density Estimation
Description: Gaussian finite mixture models fitted via EM algorithm for model-based clustering, classification, and density estimation, including Bayesian regularization, dimension reduction for visualisation, and resampling-based inference.
Author: Chris Fraley [aut],
Adrian E. Raftery [aut] (<https://orcid.org/0000-0002-6589-301X>),
Luca Scrucca [aut, cre] (<https://orcid.org/0000-0003-3826-0484>),
Thomas Brendan Murphy [ctb] (<https://orcid.org/0000-0002-5668-7046>),
Michael Fop [ctb] (<https://orcid.org/0000-0003-3936-2757>)
Maintainer: Luca Scrucca <luca.scrucca@unipg.it>
Diff between mclust versions 5.4.2 dated 2018-11-17 and 5.4.3 dated 2019-03-14
DESCRIPTION | 16 MD5 | 86 + NAMESPACE | 3 NEWS.md |only R/densityMclust.R | 44 - R/icl.R | 1 R/init.R | 12 R/mclust.R | 144 +-- R/mclustaddson.R | 16 R/mclustda.R | 45 - R/mclustdr.R | 101 +- R/util.R | 104 +- R/zzz.R | 8 build/vignette.rds |binary data/Baudry_etal_2010_JCGS_examples.rda |binary data/GvHD.rda |binary data/acidity.rda |binary data/chevron.rda |binary data/cross.rda |binary data/diabetes.rda |binary data/thyroid.rda |binary data/wreath.rda |binary inst/NEWS | 4 inst/doc/mclust.R | 15 inst/doc/mclust.Rmd | 22 inst/doc/mclust.html | 1385 ++++++++++++++++---------------- man/Mclust.Rd | 204 ++-- man/MclustBootstrap.Rd | 14 man/MclustDRsubsel.Rd | 25 man/cdens.Rd | 2 man/densityMclust.Rd | 8 man/em.Rd | 2 man/figures |only man/hc.Rd | 18 man/mclust-deprecated.Rd | 2 man/mclust.options.Rd | 33 man/mclustBIC.Rd | 10 man/mclustModelNames.Rd | 55 - man/mvn.Rd | 2 man/plot.densityMclust.Rd | 18 man/sim.Rd | 2 man/surfacePlot.Rd | 12 src/Makevars | 3 vignettes/mclust.Rmd | 22 vignettes/vignette.css | 96 +- 45 files changed, 1322 insertions(+), 1212 deletions(-)
Title: An R-Tool for Comprehensive Science Mapping Analysis
Description: Tool for quantitative research in scientometrics and bibliometrics.
It provides various routines for importing bibliographic data from SCOPUS (<http://scopus.com>),
Clarivate Analytics Web of Science (<http://www.webofknowledge.com/>), Cochrane Library (<http://www.cochranelibrary.com/>)
and PubMed (<https://www.ncbi.nlm.nih.gov/pubmed/>) databases, performing bibliometric analysis
and building networks for co-citation, coupling, scientific collaboration and co-word analysis.
Author: Massimo Aria [cre, aut],
Corrado Cuccurullo [aut]
Maintainer: Massimo Aria <aria@unina.it>
Diff between bibliometrix versions 2.1.1 dated 2019-02-07 and 2.1.2 dated 2019-03-14
DESCRIPTION | 8 - MD5 | 56 +++++------ NAMESPACE | 2 NEWS | 14 ++ R/Hindex.R | 6 - R/bib2df.R | 2 R/biblioAnalysis.R | 3 R/citations.R | 53 +++++++--- R/conceptualStructure.R | 39 ++++++- R/convert2df.R | 7 + R/histNetwork.R | 5 R/isi2df.R | 3 R/localCitations.R | 2 R/plot.bibliometrix.R | 21 ++-- R/readFiles.R | 6 - R/rpys.R | 61 ++++++------ R/summary.bibliometrix.R | 21 +--- R/tableTag.R | 9 + R/thematicMap.R | 5 build/partial.rdb |binary data/scientometrics.rda |binary inst/biblioshiny/server.R | 182 ++++++++++++++++++++++++++++-------- inst/biblioshiny/ui.R | 50 +++++++++ inst/doc/bibliometrix-vignette.Rmd | 10 + inst/doc/bibliometrix-vignette.html | 90 +++++++++-------- man/conceptualStructure.Rd | 7 - man/plot.bibliometrix.Rd | 3 man/thematicMap.Rd | 4 vignettes/bibliometrix-vignette.Rmd | 10 + 29 files changed, 482 insertions(+), 197 deletions(-)
Title: Alternating Minimization Induced Active Set Algorithms
Description: An implementation of alternating minimization induced active set (AMIAS) method for solving the generalized L0 problem. The AMIAS method is based on the necessary optimality conditions derived from an augmented Lagrangian framework. The proposed method takes full advantage of the primal and dual variables with complementary supports, and decouples the high-dimensional problem into two sub-systems on the active and inactive sets, respectively. A sequential AMIAS algorithm with warm start initialization is developed for efficient determination of the cardinality parameter, along with the output of solution paths.
Author: Canhong Wen, Xueqin Wang, Shijie Quan, Zelin Hong, Aijun Zhang
Maintainer: Canhong Wen <wench@ustc.edu.cn>
Diff between AMIAS versions 1.0.2 dated 2018-04-19 and 1.1.0 dated 2019-03-14
AMIAS-1.0.2/AMIAS/R/AMIAS.R |only AMIAS-1.0.2/AMIAS/R/AMIAS2d.R |only AMIAS-1.0.2/AMIAS/man/AMIAS.Rd |only AMIAS-1.0.2/AMIAS/man/AMIAS2d.Rd |only AMIAS-1.0.2/AMIAS/man/plot.AMIAS.1d.Rd |only AMIAS-1.1.0/AMIAS/DESCRIPTION | 14 AMIAS-1.1.0/AMIAS/MD5 | 36 + AMIAS-1.1.0/AMIAS/NAMESPACE | 34 + AMIAS-1.1.0/AMIAS/R/SimWave.R |only AMIAS-1.1.0/AMIAS/R/SimuBlocks.R |only AMIAS-1.1.0/AMIAS/R/SimuDoppler.R |only AMIAS-1.1.0/AMIAS/R/amias.R |only AMIAS-1.1.0/AMIAS/R/coef.amias.R |only AMIAS-1.1.0/AMIAS/R/coef.samias.R |only AMIAS-1.1.0/AMIAS/R/genD.R | 468 +++++++++++----------- AMIAS-1.1.0/AMIAS/R/plot.amias.R |only AMIAS-1.1.0/AMIAS/R/plot.samias.R |only AMIAS-1.1.0/AMIAS/R/print.amias.R |only AMIAS-1.1.0/AMIAS/R/print.samias.R |only AMIAS-1.1.0/AMIAS/R/samias.R |only AMIAS-1.1.0/AMIAS/man/SimuBlocks.Rd |only AMIAS-1.1.0/AMIAS/man/amias.Rd |only AMIAS-1.1.0/AMIAS/man/coef.amias.Rd |only AMIAS-1.1.0/AMIAS/man/genD.Rd | 80 ++- AMIAS-1.1.0/AMIAS/man/my.rollmean.Rd | 51 +- AMIAS-1.1.0/AMIAS/man/plot.amias.Rd |only AMIAS-1.1.0/AMIAS/man/print.amias.Rd |only AMIAS-1.1.0/AMIAS/man/samias.Rd |only AMIAS-1.1.0/AMIAS/src/AMIAS.f90 | 681 ++++++++++++++++++++++++--------- AMIAS-1.1.0/AMIAS/src/AMIAS_init.c | 66 ++- 30 files changed, 929 insertions(+), 501 deletions(-)
Title: Discrete-Event Simulation for R
Description: A process-oriented and trajectory-based Discrete-Event Simulation
(DES) package for R. It is designed as a generic yet powerful framework. The
architecture encloses a robust and fast simulation core written in 'C++' with
automatic monitoring capabilities. It provides a rich and flexible R API that
revolves around the concept of trajectory, a common path in the simulation
model for entities of the same type. Documentation about 'simmer' is provided
by several vignettes included in this package, via the paper by Ucar, Smeets
& Azcorra (2018, <arXiv:1705.09746>), and the paper by Ucar, Hernández,
Serrano & Azcorra (2018, <doi:10.1109/MCOM.2018.1700960>);
see 'citation("simmer")' for details.
Author: Iñaki Ucar [aut, cph, cre] (<https://orcid.org/0000-0001-6403-5550>),
Bart Smeets [aut, cph]
Maintainer: Iñaki Ucar <iucar@fedoraproject.org>
Diff between simmer versions 4.2.0 dated 2019-01-09 and 4.2.2 dated 2019-03-14
simmer-4.2.0/simmer/inst/doc/simmer-02-jss.html |only simmer-4.2.2/simmer/DESCRIPTION | 7 simmer-4.2.2/simmer/MD5 | 40 simmer-4.2.2/simmer/NEWS.md | 15 simmer-4.2.2/simmer/R/trajectory-class.R | 4 simmer-4.2.2/simmer/build/vignette.rds |binary simmer-4.2.2/simmer/inst/doc/simmer-01-introduction.html | 528 +- simmer-4.2.2/simmer/inst/doc/simmer-02-jss.pdf |only simmer-4.2.2/simmer/inst/doc/simmer-03-trajectories.html | 2626 +++++----- simmer-4.2.2/simmer/inst/doc/simmer-04-bank-1.html | 1366 ++--- simmer-4.2.2/simmer/inst/doc/simmer-04-bank-2.html | 1678 +++--- simmer-4.2.2/simmer/inst/doc/simmer-05-simpy.html | 890 ++- simmer-4.2.2/simmer/inst/doc/simmer-06-queueing.html | 558 +- simmer-4.2.2/simmer/inst/doc/simmer-07-ctmc.html | 692 +- simmer-4.2.2/simmer/inst/doc/simmer-08-philosophers.html | 432 + simmer-4.2.2/simmer/inst/doc/simmer-aa-5G.html | 1087 ++-- simmer-4.2.2/simmer/inst/include/simmer/activity/async.h | 31 simmer-4.2.2/simmer/inst/include/simmer/process/arrival.h | 4 simmer-4.2.2/simmer/inst/include/simmer/simulator_impl.h | 12 simmer-4.2.2/simmer/tests/testthat/test-simmer-resource-preemption.R | 30 simmer-4.2.2/simmer/tests/testthat/test-trajectory-batch-separate.R | 14 simmer-4.2.2/simmer/tests/testthat/test-trajectory-send-trap.R | 48 22 files changed, 6012 insertions(+), 4050 deletions(-)
Title: Data Exchange Between R and 'LabKey' Server
Description: The 'LabKey' client library for R makes it easy for R users to
load live data from a 'LabKey' Server, <http://www.labkey.com/>,
into the R environment for analysis, provided users have permissions
to read the data. It also enables R users to insert, update, and
delete records stored on a 'LabKey' Server, provided they have appropriate
permissions to do so.
Author: Peter Hussey
Maintainer: Cory Nathe <cnathe@labkey.com>
Diff between Rlabkey versions 2.2.4 dated 2018-11-05 and 2.2.5 dated 2019-03-14
DESCRIPTION | 8 ++++---- MD5 | 34 +++++++++++++++++----------------- NEWS | 4 ++++ R/RcppExports.R | 2 +- R/labkey.curlOptions.R | 2 +- R/labkey.defaults.R | 2 +- R/labkey.domain.R | 12 ++++++++++-- R/labkey.experiment.R | 2 +- R/labkey.importRows.R | 2 +- R/labkey.makeRemotePath.R | 2 +- R/labkey.moduleProperty.R | 2 +- R/labkey.rstudio.R | 2 +- R/labkey.setCurlOptions.R | 2 +- R/labkey.transform.R | 15 +++++++++++++++ inst/doc/RlabkeyExample.pdf |binary man/Rlabkey-package.Rd | 4 ++-- man/labkey.domain.createAndLoad.Rd | 1 + src/listToMatrix.cpp | 11 ++++++++++- 18 files changed, 72 insertions(+), 35 deletions(-)
Title: Bindings for the 'Geospatial' Data Abstraction Library
Description: Provides bindings to the 'Geospatial' Data Abstraction Library ('GDAL') (>= 1.11.4 and <= 2.5.0) and access to projection/transformation operations from the 'PROJ.4' library. The 'GDAL' and 'PROJ.4' libraries are external to the package, and, when installing the package from source, must be correctly installed first. From 'rgdal' 1.4.1, provision is made for 'PROJ6' accommodation, with 'PROJ6' functionality to follow; from 1.4.1 'rgdal' will build and function when 'PROJ' >= 6. Both 'GDAL' raster and 'OGR' vector map data can be imported into R, and 'GDAL' raster data and 'OGR' vector data exported. Use is made of classes defined in the 'sp' package. Windows and Mac Intel OS X binaries (including 'GDAL', 'PROJ.4' and 'Expat') are provided on 'CRAN'.
Author: Roger Bivand [cre, aut] (<https://orcid.org/0000-0003-2392-6140>),
Tim Keitt [aut],
Barry Rowlingson [aut, ctb],
Edzer Pebesma [ctb],
Michael Sumner [ctb],
Robert Hijmans [ctb],
Even Rouault [cph, ctb],
Frank Warmerdam [cph, ctb],
Jeroen Ooms [ctb],
Colin Rundel [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgdal versions 1.4-2 dated 2019-03-11 and 1.4-3 dated 2019-03-14
ChangeLog | 51 +++++++++++++++++++++ DESCRIPTION | 8 +-- MD5 | 35 +++++++------- R/gdal.R | 12 ++++- R/project.R | 8 +-- build/vignette.rds |binary configure | 92 +++++++++++++++++++++++++++------------ configure.ac | 63 +++++++++++++++++++------- inst/ChangeLog | 51 +++++++++++++++++++++ inst/SVN_VERSION | 2 inst/doc/OGR_shape_encoding.pdf |binary inst/pictures/MR5905167_372.nc |only inst/pictures/SOURCES | 2 man/GDALReadOnlyDataset-class.Rd | 2 man/project.Rd | 10 ++++ man/readGDAL.Rd | 5 ++ src/inverser.c | 4 + tests/srs_rendering.R | 9 ++- tests/srs_rendering.Rout.save | 56 ++++++++--------------- 19 files changed, 296 insertions(+), 114 deletions(-)
Title: GUI Tools Made Easy: Interact with Models and Explore Data
Description: Provides software to facilitate the design, testing, and operation
of computer models. It focuses particularly on tools that make it easy to
construct and edit a customized graphical user interface ('GUI'). Although our
simplified 'GUI' language depends heavily on the R interface to the 'Tcl/Tk'
package, a user does not need to know 'Tcl/Tk'. Examples illustrate models
built with other R packages, including 'PBSmapping', 'PBSddesolve', and 'BRugs'.
A complete user's guide 'PBSmodelling-UG.pdf' shows how to use this package
effectively.
Author: Jon T. Schnute [aut],
Alex Couture-Beil [aut],
Rowan Haigh [aut, cre],
Nicholas Boers [ctb],
Anisa Egeli [ctb],
A. R. Kronlund [ctb],
Steve Martell [ctb],
Norm Olsen [ctb]
Maintainer: Rowan Haigh <rowan.haigh@dfo-mpo.gc.ca>
Diff between PBSmodelling versions 2.68.6 dated 2017-12-27 and 2.68.8 dated 2019-03-14
DESCRIPTION | 23 - MD5 | 22 - R/plotFuns.r | 220 +++++++------ inst/doc/ChangeLog.txt | 16 - man/packList.Rd | 27 + man/view.Rd | 25 + src/fib.h | 2 src/fib2.c | 2 src/fib2.h | 2 src/init.c | 4 src/parser.c | 780 ++++++++++++++++++++++++------------------------- src/parser.h | 34 +- 12 files changed, 615 insertions(+), 542 deletions(-)
Title: Visualizing Social Science Data with 'ggplot2'
Description: A 'ggplot2' extension for implementing parliament charts and several other useful visualizations.
Author: Frederik Tiedemann [aut, cre]
Maintainer: Frederik Tiedemann <fj.tiedemann@googlemail.com>
Diff between ggpol versions 0.0.4 dated 2018-09-20 and 0.0.5 dated 2019-03-14
DESCRIPTION | 18 +++++++++--------- MD5 | 37 ++++++++++++++++++++----------------- NAMESPACE | 9 +++++++++ NEWS.md | 8 ++++++++ R/geom_arcbar.R | 8 +++++--- R/geom_boxjitter.R | 14 +++++++++++--- R/geom_confmat.R |only R/geom_tshighlight.R | 26 +++++++++++++++++++++++--- R/ggproto-classes.R | 1 + R/stat-arcbar.R | 24 ++++++++++-------------- R/stat-confmat.R |only R/utilities.R | 7 +++++++ man/GeomConfmat.Rd |only man/facet_share.Rd | 12 +++++------- man/geom_arcbar.Rd | 4 ++-- man/geom_bartext.Rd | 6 +++--- man/geom_boxjitter.Rd | 26 +++++++++++++------------- man/geom_circle.Rd | 4 ++-- man/geom_parliament.Rd | 12 ++++++------ man/geom_tshighlight.Rd | 4 ++-- man/ggpol-extensions.Rd | 3 ++- 21 files changed, 138 insertions(+), 85 deletions(-)
Title: Comparative 'Phylogenetic' Analyses of Diversification
Description: Contains a number of comparative 'phylogenetic' methods,
mostly focusing on analysing diversification and character
evolution. Contains implementations of 'BiSSE' (Binary State
'Speciation' and Extinction) and its unresolved tree extensions,
'MuSSE' (Multiple State 'Speciation' and Extinction), 'QuaSSE',
'GeoSSE', and 'BiSSE-ness' Other included methods include Markov
models of discrete and continuous trait evolution and constant rate
'speciation' and extinction.
Author: Richard G. FitzJohn <fitzjohn@zoology.ubc.ca>, with 'GeoSSE' and
'ClaSSE' by Emma E. Goldberg <eeg@uic.edu>, and 'BiSSE-ness' by Karen
Magnuson-Ford.
Maintainer: Richard G. FitzJohn <rich.fitzjohn@gmail.com>
Diff between diversitree versions 0.9-10 dated 2017-04-05 and 0.9-11 dated 2019-03-14
DESCRIPTION | 6 +++--- MD5 | 42 +++++++++++++++++++++--------------------- R/check.R | 2 +- R/model-bisse.R | 2 +- build/partial.rdb |binary man/constrain.Rd | 8 +++++++- man/find.mle.Rd | 6 ++++++ man/make.bisse.Rd | 11 ++++++++--- man/make.bisse.split.Rd | 6 ++++++ man/make.bisse.td.Rd | 6 ++++++ man/make.bisseness.Rd | 8 +++++++- man/make.classe.Rd | 6 ++++++ man/make.geosse.Rd | 6 ++++++ man/make.geosse.t.Rd | 6 ++++++ man/make.musse.Rd | 6 ++++++ man/make.quasse.Rd | 6 ++++++ man/mcmc.Rd | 6 ++++++ man/plot.history.Rd | 6 ++++++ man/set.defaults.Rd | 6 ++++++ man/simulate.Rd | 6 ++++++ man/trait.plot.Rd | 6 ++++++ src/GslOdeR.cpp | 6 +++++- 22 files changed, 131 insertions(+), 32 deletions(-)
Title: Learning Discrete Bayesian Network Classifiers from Data
Description: State-of-the art algorithms for learning discrete Bayesian network classifiers from data, including a number of those described in Bielza & Larranaga (2014) <doi:10.1145/2576868>, with functions for prediction, model evaluation and inspection.
Author: Mihaljevic Bojan [aut, cre],
Bielza Concha [aut],
Larranaga Pedro [aut],
Wickham Hadley [ctb] (some code extracted from memoise package)
Maintainer: Mihaljevic Bojan <bmihaljevic@fi.upm.es>
Diff between bnclassify versions 0.4.1 dated 2018-07-25 and 0.4.2 dated 2019-03-14
DESCRIPTION | 6 +- MD5 | 69 ++++++++++++------------- NEWS.md | 3 + R/RcppExports.R | 16 ++--- R/graph-internal.r | 2 build/vignette.rds |binary inst/CITATION |only inst/doc/methods.pdf |binary inst/doc/overview.R | 8 ++ inst/doc/overview.pdf |binary inst/doc/usage.R | 10 +++ inst/doc/usage.pdf |binary inst/doc/usage.rmd | 24 +++++--- inst/include/basic-misc.h | 2 inst/include/infer.h | 2 inst/include/multidim-array.h | 2 man/makeRLearner.bnc.Rd | 2 man/predictLearner.bnc.Rd | 2 man/trainLearner.bnc.Rd | 2 src/RcppExports.cpp | 50 +++++++++--------- tests/testthat/test-anb-dag.R | 3 - tests/testthat/test-basic-misc.R | 3 - tests/testthat/test-cv.R | 30 +++++++--- tests/testthat/test-dag.R | 3 - tests/testthat/test-data-statistics.R | 11 ++- tests/testthat/test-learn-params-awnb.R | 8 ++ tests/testthat/test-learn-params.R | 3 - tests/testthat/test-learn-struct.R | 24 +++++--- tests/testthat/test-memoise.R | 3 - tests/testthat/test-update.R | 3 - vignettes/includes/abstract.rmd | 2 vignettes/includes/background.rmd | 21 +++---- vignettes/includes/functionalities.rmd | 46 ++++++++-------- vignettes/includes/impl-related-conclusion.rmd | 4 - vignettes/includes/usage.rmd | 24 +++++--- vignettes/usage.rmd | 24 +++++--- 36 files changed, 240 insertions(+), 172 deletions(-)
Title: Event Study Analysis
Description: Perform Event Studies from through our <http://EventStudyTools.com> Application Programming Interface, parse the results, visualize it, and / or use the results in further analysis.
Author: Dr. Simon Mueller
Maintainer: Dr. Simon Mueller <simon.mueller@muon-stat.com>
Diff between EventStudy versions 0.35 dated 2019-03-02 and 0.36 dated 2019-03-14
DESCRIPTION | 8 ++-- MD5 | 20 ++++++------ NEWS.md | 26 +++++++++++----- R/EventStudyAPI.R | 21 +++++++++--- inst/doc/addin_eventstudy.html | 4 +- inst/doc/howto_eventstudy.html | 4 +- inst/doc/introduction_eventstudy.html | 4 +- inst/doc/parameters_eventstudy.R | 3 + inst/doc/parameters_eventstudy.Rmd | 30 ++++++++++-------- inst/doc/parameters_eventstudy.html | 55 +++++++++++++++++----------------- vignettes/parameters_eventstudy.Rmd | 30 ++++++++++-------- 11 files changed, 118 insertions(+), 87 deletions(-)
More information about EHRtemporalVariability at CRAN
Permanent link
Title: Interface to 'LMDB'
Description: Key-value store, implemented as a wrapper around 'LMDB';
the "lightning memory-mapped database" <https://symas.com/lmdb/>.
'LMDB' is a transactional key value store that uses a memory map
for efficient access. This package wraps the entire 'LMDB'
interface (except duplicated keys), and provides objects for
transactions and cursors.
Author: Rich FitzJohn [aut, cre],
Howard Chu [cph],
Symas Corporation [cph],
Martin Hedenfalk [cph],
The OpenLDAP Foundation [cph]
Maintainer: Rich FitzJohn <rich.fitzjohn@gmail.com>
Diff between thor versions 1.0.1 dated 2018-07-18 and 1.1.0 dated 2019-03-14
thor-1.0.1/thor/tests/testthat/test-dup.R |only thor-1.1.0/thor/DESCRIPTION | 11 thor-1.1.0/thor/MD5 | 52 +- thor-1.1.0/thor/NAMESPACE | 1 thor-1.1.0/thor/NEWS.md |only thor-1.1.0/thor/R/mdb_cursor.R | 75 --- thor-1.1.0/thor/R/mdb_dbi.R | 6 thor-1.1.0/thor/R/mdb_env.R | 45 -- thor-1.1.0/thor/R/mdb_txn.R | 35 - thor-1.1.0/thor/R/thor.R | 51 -- thor-1.1.0/thor/R/util.R | 17 thor-1.1.0/thor/R/zzz.R | 1 thor-1.1.0/thor/README.md | 30 - thor-1.1.0/thor/build/vignette.rds |binary thor-1.1.0/thor/inst/doc/thor.html | 601 ++++++++++++++++++--------- thor-1.1.0/thor/man/mdb_cursor.Rd | 13 thor-1.1.0/thor/man/mdb_dbi.Rd | 27 - thor-1.1.0/thor/man/mdb_env.Rd | 45 -- thor-1.1.0/thor/man/mdb_txn.Rd | 40 - thor-1.1.0/thor/src/registration.c | 18 thor-1.1.0/thor/src/thor.c | 180 +++----- thor-1.1.0/thor/src/thor.h | 20 thor-1.1.0/thor/src/util.c | 23 + thor-1.1.0/thor/src/util.h | 1 thor-1.1.0/thor/tests/testthat/test-cursor.R | 2 thor-1.1.0/thor/tests/testthat/test-env.R | 35 + thor-1.1.0/thor/tests/testthat/test-txn.R | 18 thor-1.1.0/thor/tests/testthat/test-util.R | 5 28 files changed, 702 insertions(+), 650 deletions(-)
Title: Parallel GLM
Description: Provides a parallel estimation method for generalized
linear models without compiling with a multithreaded LAPACK or BLAS.
Author: Benjamin Christoffersen [cre, aut],
Anthony Williams [cph],
Boost developers [cph]
Maintainer: Benjamin Christoffersen <boennecd@gmail.com>
Diff between parglm versions 0.1.1 dated 2019-01-19 and 0.1.2 dated 2019-03-14
DESCRIPTION | 6 ++-- MD5 | 20 ++++++------- NEWS.md | 4 ++ R/parglm.R | 4 ++ src/LAPACK_wrappers.cpp | 34 +++++++++-------------- src/LAPACK_wrappers.h | 4 +- src/arma_n_rcpp.h | 2 - src/parallel_glm.cpp | 56 ++++++++++++++++++++++---------------- src/parallel_qr.cpp | 5 ++- src/thread_pool.h | 42 +++++++++++++++++++++------- tests/testthat/test_parglm_fams.R | 4 +- 11 files changed, 106 insertions(+), 75 deletions(-)
Title: Piece-Wise Exponential Additive Mixed Modeling Tools
Description: The Piece-wise exponential (Additive Mixed) Model
(PAMM; Bender and Scheipl (2018) <doi: 10.1177/1471082X17748083>) is a
powerful model class for survival analysis, based on Generalized Additive
(Mixed) Models (GA(M)Ms). It offers intuitive specification and robust
estimation of complex survival models with stratified baseline hazards,
random effects, time-varying effects, time-dependent covariates and
cumulative effects (Bender et. al. (2018) <doi:10.1093/biostatistics/kxy003>.
pammtools provides tidy workflow for survival analysis with PAMMs,
including data transformation and other pre- and post-processing
functions as well as visualization.
Author: Andreas Bender [aut, cre] (<https://orcid.org/0000-0001-5628-8611>),
Fabian Scheipl [aut]
Maintainer: Andreas Bender <andreas.bender@stat.uni-muenchen.de>
Diff between pammtools versions 0.1.8 dated 2019-01-02 and 0.1.9 dated 2019-03-14
pammtools-0.1.8/pammtools/R/mgcv-utils.R |only pammtools-0.1.9/pammtools/DESCRIPTION | 8 - pammtools-0.1.9/pammtools/MD5 | 21 +- pammtools-0.1.9/pammtools/NAMESPACE | 1 pammtools-0.1.9/pammtools/NEWS.md | 3 pammtools-0.1.9/pammtools/man/figures/logo.png |binary pammtools-0.1.9/pammtools/man/tidyr_verbs.Rd | 9 - pammtools-0.1.9/pammtools/tests/testthat/test-add-functions.R | 3 pammtools-0.1.9/pammtools/tests/testthat/test-cumulative-coefficients.R | 21 +- pammtools-0.1.9/pammtools/tests/testthat/test-cumulative-effect.R | 8 - pammtools-0.1.9/pammtools/tests/testthat/test-newdata.R | 78 +++++----- pammtools-0.1.9/pammtools/tests/testthat/test-simulation.R | 2 12 files changed, 82 insertions(+), 72 deletions(-)
Title: Distance Measures for Time Series Data
Description: A set of commonly used distance measures and some additional functions which, although initially not designed for this purpose, can be used to measure the dissimilarity between time series. These measures can be used to perform clustering, classification or other data mining tasks which require the definition of a distance measure between time series.
Author: Usue Mori, Alexander Mendiburu, J.A. Lozano
Maintainer: Usue Mori <usue.mori@ehu.eus>
Diff between TSdist versions 3.4 dated 2017-04-28 and 3.5 dated 2019-03-14
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/1NN.R | 2 +- inst/tests/test.kmedoids.R | 2 +- inst/tests/test.oneNN.R | 4 ++-- 5 files changed, 12 insertions(+), 12 deletions(-)
Title: Estimating Time-Varying k-Order Mixed Graphical Models
Description: Estimation of k-Order time-varying Mixed Graphical Models and mixed VAR(p) models via elastic-net regularized neighborhood regression. For details see linked paper.
Author: Jonas Haslbeck
Maintainer: Jonas Haslbeck <jonashaslbeck@gmail.com>
Diff between mgm versions 1.2-5 dated 2019-01-07 and 1.2-6 dated 2019-03-14
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS | 3 +++ R/mvar.R | 4 ++-- R/plotRes.R | 13 +++++++++++-- R/resample.R | 8 ++++++-- man/mgm-internal.Rd | 15 ++++++++++++--- 7 files changed, 43 insertions(+), 18 deletions(-)
Title: Dynamic Documents for R
Description: Convert R Markdown documents into a variety of formats.
Author: JJ Allaire [aut],
Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Jonathan McPherson [aut],
Javier Luraschi [aut],
Kevin Ushey [aut],
Aron Atkins [aut],
Hadley Wickham [aut],
Joe Cheng [aut],
Winston Chang [aut],
Richard Iannone [aut] (<https://orcid.org/0000-0003-3925-190X>),
Jeff Allen [ctb],
Barret Schloerke [ctb],
Roy Storey [ctb],
Rob Hyndman [ctb],
Ruben Arslan [ctb],
Frederik Aust [ctb] (<https://orcid.org/0000-0003-4900-788X>),
Christophe Dervieux [ctb],
Malcolm Barrett [ctb],
RStudio, Inc. [cph],
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/rmd/h/jquery-AUTHORS.txt),
jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in
inst/rmd/h/jqueryui-AUTHORS.txt),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Alexander Farkas [ctb, cph] (html5shiv library),
Scott Jehl [ctb, cph] (Respond.js library),
Ivan Sagalaev [ctb, cph] (highlight.js library),
Greg Franko [ctb, cph] (tocify library),
John MacFarlane [ctb, cph] (Pandoc templates),
Google, Inc. [ctb, cph] (ioslides library),
Dave Raggett [ctb] (slidy library),
W3C [cph] (slidy library),
Dave Gandy [ctb, cph] (Font-Awesome),
Ben Sperry [ctb] (Ionicons),
Drifty [cph] (Ionicons),
Aidan Lister [ctb, cph] (jQuery StickyTabs)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between rmarkdown versions 1.11 dated 2018-12-08 and 1.12 dated 2019-03-14
rmarkdown-1.11/rmarkdown/tests/shiny/04-prerendered-envir.html |only rmarkdown-1.12/rmarkdown/DESCRIPTION | 16 +-- rmarkdown-1.12/rmarkdown/MD5 | 42 ++++---- rmarkdown-1.12/rmarkdown/NAMESPACE | 1 rmarkdown-1.12/rmarkdown/NEWS.md | 20 +++- rmarkdown-1.12/rmarkdown/R/includes.R | 8 - rmarkdown-1.12/rmarkdown/R/latex_dependencies.R | 26 ++++- rmarkdown-1.12/rmarkdown/R/output_format.R | 2 rmarkdown-1.12/rmarkdown/R/powerpoint_presentation.R | 15 ++- rmarkdown-1.12/rmarkdown/R/relative_to.R | 14 +- rmarkdown-1.12/rmarkdown/R/render.R | 18 ++- rmarkdown-1.12/rmarkdown/R/util.R | 48 +++++----- rmarkdown-1.12/rmarkdown/inst/rmd/h/default.html | 26 +++-- rmarkdown-1.12/rmarkdown/inst/rmd/h/navigation-1.1/codefolding.js | 2 rmarkdown-1.12/rmarkdown/inst/rmd/ioslides/default.html | 5 - rmarkdown-1.12/rmarkdown/inst/rmd/ioslides/ioslides-13.5.1/theme/css/default.css | 21 ++-- rmarkdown-1.12/rmarkdown/inst/rmd/ioslides/ioslides_presentation.lua | 8 - rmarkdown-1.12/rmarkdown/inst/rmd/latex/default-1.14.tex | 2 rmarkdown-1.12/rmarkdown/inst/rmd/latex/default-1.15.2.tex | 2 rmarkdown-1.12/rmarkdown/inst/rmd/latex/default-1.17.0.2.tex | 2 rmarkdown-1.12/rmarkdown/inst/rmd/latex/default.tex | 2 rmarkdown-1.12/rmarkdown/man/latex-dependencies.Rd |only rmarkdown-1.12/rmarkdown/man/latex_dependency.Rd | 4 23 files changed, 176 insertions(+), 108 deletions(-)
Title: Polygon Clipping
Description: R port of Angus Johnson's open source library Clipper. Performs polygon clipping operations (intersection, union, set minus, set difference) for polygonal regions of arbitrary complexity, including holes. Computes offset polygons (spatial buffer zones, morphological dilations, Minkowski dilations) for polygonal regions and polygonal lines. Computes Minkowski Sum of general polygons. There is a function for removing self-intersections from polygon data.
Author: Angus Johnson [aut] (C++ original,
http://www.angusj.com/delphi/clipper.php),
Adrian Baddeley [aut, trl, cre],
Kurt Hornik [ctb],
Brian D. Ripley [ctb],
Elliott Sales de Andrade [ctb],
Paul Murrell [ctb]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between polyclip versions 1.9-1 dated 2018-07-27 and 1.10-0 dated 2019-03-14
DESCRIPTION | 14 ++++++++------ MD5 | 12 ++++++------ NEWS | 9 +++++++++ R/clipper.R | 7 +++++-- man/polyclip.Rd | 50 ++++++++++++++++++++++++++++++++++++++++---------- src/init.c | 5 +++-- src/interface.cpp | 19 +++++++++++++++---- 7 files changed, 86 insertions(+), 30 deletions(-)
Title: Weierstrass and Jacobi Elliptic Functions
Description: A suite of elliptic and related functions including Weierstrass and
Jacobi forms. Also includes various tools for manipulating and
visualizing complex functions.
Author: Robin K. S. Hankin [aut, cre] (<https://orcid.org/0000-0001-5982-0415>)
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between elliptic versions 1.3-9 dated 2018-08-03 and 1.4-0 dated 2019-03-14
DESCRIPTION | 12 ++++++------ MD5 | 32 ++++++++++++++++---------------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/ellipticpaper.R | 1 + inst/doc/ellipticpaper.Rnw | 5 +++-- inst/doc/ellipticpaper.pdf |binary inst/doc/residuetheorem.R | 4 ++-- inst/doc/residuetheorem.Rnw | 21 +++++++++++---------- inst/doc/residuetheorem.pdf |binary man/congruence.Rd | 4 ++-- man/coqueraux.Rd | 2 +- man/e16.28.1.Rd | 2 +- man/e1e2e3.Rd | 4 ++-- man/farey.Rd | 2 +- vignettes/ellipticpaper.Rnw | 5 +++-- vignettes/residuetheorem.Rnw | 21 +++++++++++---------- 17 files changed, 60 insertions(+), 55 deletions(-)
Title: Infrastructure for Running, Cycling and Swimming Data from
GPS-Enabled Tracking Devices
Description: Provides infrastructure for handling running, cycling and swimming data from GPS-enabled tracking devices within R. The package provides methods to extract, clean and organise workout and competition data into session-based and unit-aware data objects of class 'trackeRdata' (S3 class). The information can then be visualised, summarised, and analysed through flexible and extensible methods. Frick and Kosmidis (2017) <doi: 10.18637/jss.v082.i07>, which is updated and maintained as one of the vignettes, provides detailed descriptions of the package and its methods, and real-data demonstrations of the package functionality.
Author: Ioannis Kosmidis [aut, cre] (<https://orcid.org/0000-0003-1556-0302>),
Hannah Frick [aut] (<https://orcid.org/0000-0002-6049-5258>),
Robin Hornak [aut]
Maintainer: Ioannis Kosmidis <ioannis.kosmidis@warwick.ac.uk>
Diff between trackeR versions 1.3.0 dated 2019-03-05 and 1.4 dated 2019-03-14
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 7 ++++++- R/trackeRdata_summary.R | 7 ++++++- inst/doc/TourDetrackeR.html | 10 +++++----- inst/doc/trackeR.pdf |binary 6 files changed, 25 insertions(+), 15 deletions(-)
Title: Robust Data Analysis Through Monitoring and Dynamic
Visualization
Description: Provides interface to the 'MATLAB' toolbox 'Flexible Statistical Data Analysis
(FSDA)' which is a comprehensive and computationally efficient
software package for robust statistics in regression, multivariate
and categorical data analysis. The current R version implements tools
for regression: (forward search, S- and MM-estimation, least trimmed
squares (LTS) and least median of squares (LMS)). The distinctive
feature of our regression package relies in the possibility of
monitoring the statistics of interest as function of breakdown point,
efficiency or subset size, depending on the estimator. This is
accompanied by a rich set of graphical features, such as dynamic
brushing, linking, particularly useful for exploratory data analysis.
Author: Valentin Todorov [aut, cre],
Emmanuele Sordini [aut],
Aldo Corbellini [ctb],
Francesca Torti [ctb],
Marco Riani [ctb],
Domenico Perrotta [ctb],
Andrea Cerioli [ctb]
Maintainer: Valentin Todorov <valentin.todorov@chello.at>
Diff between fsdaR versions 0.4-4 dated 2018-12-05 and 0.4-6 dated 2019-03-14
fsdaR-0.4-4/fsdaR/inst/work/A-Bug.R |only fsdaR-0.4-4/fsdaR/inst/work/crash.R |only fsdaR-0.4-6/fsdaR/ChangeLog | 8 fsdaR-0.4-6/fsdaR/DESCRIPTION | 11 fsdaR-0.4-6/fsdaR/MD5 | 122 ++-- fsdaR-0.4-6/fsdaR/NAMESPACE | 14 fsdaR-0.4-6/fsdaR/R/carbikeplot.R |only fsdaR-0.4-6/fsdaR/R/corfwdplot.R | 11 fsdaR-0.4-6/fsdaR/R/datadoc.R |only fsdaR-0.4-6/fsdaR/R/fsmult.R | 8 fsdaR-0.4-6/fsdaR/R/internal.R | 54 +- fsdaR-0.4-6/fsdaR/R/malfwdplot.R | 90 +-- fsdaR-0.4-6/fsdaR/R/malindexplot.R | 4 fsdaR-0.4-6/fsdaR/R/mmdplot.R | 25 fsdaR-0.4-6/fsdaR/R/mmmult.R | 3 fsdaR-0.4-6/fsdaR/R/resfwdplot.R | 4 fsdaR-0.4-6/fsdaR/R/s3objecsdoc.R |only fsdaR-0.4-6/fsdaR/R/smult.R | 3 fsdaR-0.4-6/fsdaR/R/tclust-methods.R |only fsdaR-0.4-6/fsdaR/R/tclust.R | 603 ++++++++++++++++++++++-- fsdaR-0.4-6/fsdaR/R/tclustIC.R | 417 +++++++++------- fsdaR-0.4-6/fsdaR/R/tclustICplot.R | 247 +++++---- fsdaR-0.4-6/fsdaR/R/tclustICsol.R |only fsdaR-0.4-6/fsdaR/R/zzz.R | 1 fsdaR-0.4-6/fsdaR/data/M5data.rda |only fsdaR-0.4-6/fsdaR/data/emilia2001.rda |only fsdaR-0.4-6/fsdaR/data/geyser2.rda |only fsdaR-0.4-6/fsdaR/inst/work/Bug-examples.R |only fsdaR-0.4-6/fsdaR/inst/work/carbike-example-3.R |only fsdaR-0.4-6/fsdaR/inst/work/create-datasets.R | 53 +- fsdaR-0.4-6/fsdaR/inst/work/hbk.txt |only fsdaR-0.4-6/fsdaR/inst/work/mult-test.R | 4 fsdaR-0.4-6/fsdaR/inst/work/test-corfwdplot.R | 33 + fsdaR-0.4-6/fsdaR/inst/work/test-tclust.R | 162 +++++- fsdaR-0.4-6/fsdaR/inst/work/test-tclustIC.R | 96 +++ fsdaR-0.4-6/fsdaR/inst/work/z1.txt |only fsdaR-0.4-6/fsdaR/man/FSR_control.Rd | 3 fsdaR-0.4-6/fsdaR/man/FSReda_control.Rd | 3 fsdaR-0.4-6/fsdaR/man/LXS_control.Rd | 4 fsdaR-0.4-6/fsdaR/man/M5data.Rd |only fsdaR-0.4-6/fsdaR/man/MMreg_control.Rd | 3 fsdaR-0.4-6/fsdaR/man/MMregeda_control.Rd | 4 fsdaR-0.4-6/fsdaR/man/Sreg_control.Rd | 4 fsdaR-0.4-6/fsdaR/man/carbikeplot.Rd |only fsdaR-0.4-6/fsdaR/man/emilia2001.Rd |only fsdaR-0.4-6/fsdaR/man/fsdalms.object.Rd | 2 fsdaR-0.4-6/fsdaR/man/fsdalts.object.Rd | 2 fsdaR-0.4-6/fsdaR/man/fsmeda.object.Rd | 2 fsdaR-0.4-6/fsdaR/man/fsmult.Rd | 6 fsdaR-0.4-6/fsdaR/man/fsmult.object.Rd | 2 fsdaR-0.4-6/fsdaR/man/fsr.object.Rd | 2 fsdaR-0.4-6/fsdaR/man/fsreda.object.Rd | 2 fsdaR-0.4-6/fsdaR/man/fsreg.Rd | 2 fsdaR-0.4-6/fsdaR/man/geyser2.Rd |only fsdaR-0.4-6/fsdaR/man/malfwdplot.Rd | 83 +-- fsdaR-0.4-6/fsdaR/man/malindexplot.Rd | 2 fsdaR-0.4-6/fsdaR/man/mmdplot.Rd | 26 - fsdaR-0.4-6/fsdaR/man/mmmult.Rd | 3 fsdaR-0.4-6/fsdaR/man/mmmult.object.Rd | 2 fsdaR-0.4-6/fsdaR/man/mmreg.object.Rd | 4 fsdaR-0.4-6/fsdaR/man/mmregeda.object.Rd | 4 fsdaR-0.4-6/fsdaR/man/smult.Rd | 3 fsdaR-0.4-6/fsdaR/man/smult.object.Rd | 2 fsdaR-0.4-6/fsdaR/man/sreg.object.Rd | 4 fsdaR-0.4-6/fsdaR/man/summary.fsr.Rd | 3 fsdaR-0.4-6/fsdaR/man/summary.lms.Rd | 3 fsdaR-0.4-6/fsdaR/man/summary.lts.Rd | 3 fsdaR-0.4-6/fsdaR/man/tclustIC.Rd |only fsdaR-0.4-6/fsdaR/man/tclustICplot.Rd |only fsdaR-0.4-6/fsdaR/man/tclustICsol.Rd |only fsdaR-0.4-6/fsdaR/man/tclusteda.object.Rd |only fsdaR-0.4-6/fsdaR/man/tclustfsda.Rd |only fsdaR-0.4-6/fsdaR/man/tclustfsda.object.Rd |only fsdaR-0.4-6/fsdaR/man/tclustic.object.Rd |only fsdaR-0.4-6/fsdaR/man/tclusticsol.object.Rd |only 75 files changed, 1611 insertions(+), 545 deletions(-)