Title: Relationship Matrices for Diploid and Autopolyploid Species
Description: Computation of A (pedigree), G (genomic-base), and H (A corrected
by G) relationship matrices for diploid and autopolyploid species. Several methods
are implemented considering additive and non-additive models.
Author: Rodrigo Amadeu [aut, cre],
Catherine Cellon [ctb],
Leticia Lara [ctb],
Marcio Resende [ctb],
Ivone Oliveira [ctb],
Luis Ferrao [ctb],
Patricio Munoz [ctb],
Augusto Garcia [ctb]
Maintainer: Rodrigo Amadeu <rramadeu@ufl.edu>
Diff between AGHmatrix versions 0.0.4 dated 2018-06-06 and 0.0.5 dated 2019-03-26
DESCRIPTION | 11 MD5 | 34 - R/Amatrix.R | 58 -- R/Gmatrix.R | 51 + R/Hmatrix.R | 6 R/datatreat.R | 15 R/formatmatrix.R | 22 R/missingdata.R | 2 build/vignette.rds |binary inst/doc/Tutorial_AGHmatrix.html | 1006 +++++++++++++++++++-------------------- inst/misc |only man/Amatrix.Rd | 2 man/Gmatrix.Rd | 18 man/Hmatrix.Rd | 2 man/datatreat.Rd | 8 man/formatmatrix.Rd | 14 man/missingdata.Rd | 2 17 files changed, 638 insertions(+), 613 deletions(-)
More information about SemNetDictionaries at CRAN
Permanent link
Title: Polyhedra Database
Description: A polyhedra database scraped from various sources as R6 objects and 'rgl' visualizing capabilities.
Author: Alejandro Baranek [aut, com, cre, cph],
Leonardo Belen [aut, com, cph],
Barret Schloerke [rev],
Lijia Yu [rev]
Maintainer: Alejandro Baranek <abaranek@dc.uba.ar>
Diff between Rpolyhedra versions 0.4.1 dated 2019-02-20 and 0.4.2 dated 2019-03-26
ChangeLog | 478 +++++++++++++++-------- DESCRIPTION | 22 - MD5 | 297 +++++++------- NAMESPACE | 1 NEWS.md |only R/db-lib.R | 4 R/env-lib.R | 10 R/polyhedra-lib.R | 54 +- R/public-lib.R | 2 R/test-lib.R | 12 README.md | 26 - inst/doc/Rpolyhedra.R | 34 + inst/doc/Rpolyhedra.Rmd | 40 + inst/doc/Rpolyhedra.html | 187 +++++++- inst/extdata/polyhedra.RDS |binary inst/extdata/polyhedra/dmccooey/1b53af19.RDS.zip |binary inst/extdata/polyhedra/dmccooey/2d13193a.RDS.zip |binary inst/extdata/polyhedra/dmccooey/75a525aa.RDS.zip |binary inst/extdata/polyhedra/dmccooey/98d9147f.RDS.zip |binary inst/extdata/polyhedra/dmccooey/9cfe921d.RDS.zip |binary inst/extdata/polyhedra/dmccooey/b844f693.RDS.zip |binary inst/extdata/polyhedra/dmccooey/c26dab1e.RDS.zip |binary inst/extdata/polyhedra/dmccooey/c2ed6fc0.RDS.zip |binary inst/extdata/polyhedra/dmccooey/cecb7eda.RDS.zip |binary inst/extdata/polyhedra/netlib/011e6aa5.RDS.zip |binary inst/extdata/polyhedra/netlib/013c8d56.RDS.zip |binary 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Title: Computing Essential Biodiversity Variables from Global Forest
Change Data
Description: Metrics of two Essential Biodiversity Variables: forest extents and forest fragmentation indices (O'connor et al., 2015) <doi:10.1002/rse2.4> are computed by processing Global Forest Change data (Hansen et al., 2013) <doi:10.1126/science.1244693>. The Forest Change Data are extracted using either Geographic Administrative Units, see <https://gadm.org/>, or user-defined polygons. Most of the procedures can be understood implementing two functions: FCPolygon() and EBVmetric().
Author: Wilson Lara <wilarhen@temple.edu>, Victor Gutierrez-Velez <victorhugo@temple.edu>
Maintainer: Wilson Lara <wilarhen@temple.edu>
Diff between forestChange versions 0.4 dated 2019-02-19 and 0.5 dated 2019-03-26
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 5 +++++ R/GFCurls.R | 16 +++++++++------- build/partial.rdb |binary man/GFCurls.Rd | 4 +++- man/forestChange-package.Rd | 2 -- man/getGADM.Rd | 8 ++++---- 8 files changed, 32 insertions(+), 25 deletions(-)
Title: Analysis of Ecotoxicology
Description: A simple approach to using a probit or logit analysis to calculate
lethal concentration (LC) or time (LT) and the appropriate fiducial
confidence limits desired for selected LC or LT for
ecotoxicology studies (Finney 1971; Wheeler et al. 2006;
Robertson et al. 2007). The simplicity of 'ecotox' comes from the
syntax it implies within its functions which are similar to functions
like glm() and lm(). In addition to the simplicity of the syntax,
a comprehensive data frame is produced which gives the user a
predicted LC or LT value for the desired level and a suite of important
parameters such as fiducial confidence limits and slope.
Finney, D.J. (1971, ISBN: 052108041X);
Wheeler, M.W., Park, R.M., and Bailer, A.J. (2006) <doi:10.1897/05-320R.1>;
Robertson, J.L., Savin, N.E., Russell, R.M., and Preisler, H.K.
(2007, ISBN: 0849323312).
Author: Benjamin L Hlina [aut, cre]
Maintainer: Benjamin L Hlina <benjamin.hlina@gmail.com>
Diff between ecotox versions 1.3.3 dated 2018-10-29 and 1.4.0 dated 2019-03-26
ecotox-1.3.3/ecotox/data/lampreytime.rda |only ecotox-1.3.3/ecotox/data/lampreytox.rda |only ecotox-1.3.3/ecotox/man/lampreytime.Rd |only ecotox-1.3.3/ecotox/man/lampreytox.Rd |only ecotox-1.4.0/ecotox/DESCRIPTION | 8 ecotox-1.4.0/ecotox/MD5 | 41 ++-- ecotox-1.4.0/ecotox/NAMESPACE | 1 ecotox-1.4.0/ecotox/R/LCx.R | 158 ++++++++++++------- ecotox-1.4.0/ecotox/R/LTx.R | 102 ++++++++---- ecotox-1.4.0/ecotox/R/lampreytime.R | 4 ecotox-1.4.0/ecotox/R/lampreytox.R | 4 ecotox-1.4.0/ecotox/R/ratio_test.R |only ecotox-1.4.0/ecotox/README.md | 14 - ecotox-1.4.0/ecotox/data/lamprey_time.rda |only ecotox-1.4.0/ecotox/data/lamprey_tox.rda |only ecotox-1.4.0/ecotox/man/LC_logit.Rd | 41 ++-- ecotox-1.4.0/ecotox/man/LC_probit.Rd | 46 ++--- ecotox-1.4.0/ecotox/man/LT_logit.Rd | 20 +- ecotox-1.4.0/ecotox/man/LT_probit.Rd | 21 +- ecotox-1.4.0/ecotox/man/lamprey_time.Rd |only ecotox-1.4.0/ecotox/man/lamprey_tox.Rd |only ecotox-1.4.0/ecotox/man/ratio_test.Rd |only ecotox-1.4.0/ecotox/tests/testthat/test-LC_logit.R | 14 - ecotox-1.4.0/ecotox/tests/testthat/test-LC_probit.R | 16 - ecotox-1.4.0/ecotox/tests/testthat/test-LT_logit.R | 14 - ecotox-1.4.0/ecotox/tests/testthat/test-LT_probit.R | 14 - ecotox-1.4.0/ecotox/tests/testthat/test-ratio_test.R |only 27 files changed, 313 insertions(+), 205 deletions(-)
Title: Co-Clustering Package for Binary, Categorical, Contingency and
Continuous Data-Sets
Description: Simultaneous clustering of rows and columns, usually designated by
biclustering, co-clustering or block clustering, is an important technique
in two way data analysis. It consists of estimating a mixture model which
takes into account the block clustering problem on both the individual and
variables sets. The 'blockcluster' package provides a bridge between the C++
core library build on top of the 'STK++' library, and the R statistical
computing environment. This package allows to co-cluster binary
<doi:10.1016/j.csda.2007.09.007>, contingency <doi:10.1080/03610920903140197>,
continuous <doi:10.1007/s11634-013-0161-3> and categorical data-sets
<doi:10.1007/s11222-014-9472-2>. It also provides utility functions to
visualize the results. This package may be useful for various applications
in fields of Data mining, Information retrieval, Biology, computer vision
and many more. More information about the project and comprehensive tutorial
can be found on the link mentioned in URL.
Author: Serge Iovleff [aut, cre],
Parmeet Singh Bhatia [aut],
Josselin Demont [ctb],
Vincent Brault [ctb],
Vincent Kubicki [ctb],
Gerard Goavert [ctb],
Christophe Biernacki [ctb],
Gilles Celeux [ctb]
Maintainer: Serge Iovleff <Serge.Iovleff@stkpp.org>
Diff between blockcluster versions 4.3.2 dated 2018-10-05 and 4.4.3 dated 2019-03-26
DESCRIPTION | 14 MD5 | 120 - R/coclusterBinary.R | 23 R/coclusterCategorical.R | 54 R/coclusterContingency.R | 85 R/coclusterContinuous.R | 68 R/coclusterStrategy.R | 109 - R/optionclasses.R | 12 build/vignette.rds |binary data/binarydata.rda |binary data/categoricaldata.rda |binary data/contingencydatalist.rda |binary data/contingencydataunknown.rda |binary data/gaussiandata.rda |binary inst/doc/blockcluster_tutorial.R | 62 inst/doc/blockcluster_tutorial.Rnw | 184 + inst/doc/blockcluster_tutorial.pdf | 1624 ++++++++-------- man/coclusterCategorical.Rd | 4 man/coclusterContingency.Rd | 2 man/coclusterContinuous.Rd | 2 man/coclusterStrategy.Rd | 15 src/BinaryDataExchange.cpp | 6 src/BinaryDataExchange.h | 6 src/CategoricalDataExchange.cpp | 6 src/CategoricalDataExchange.h | 6 src/ContingencyDataExchange.cpp | 4 src/ContinuousDataExchange.cpp | 4 src/IDataExchange.cpp | 1 src/Makevars | 6 src/Makevars.win | 6 src/coclust/src/Algorithms/CEMAlgo.cpp | 19 src/coclust/src/Algorithms/EMAlgo.cpp | 19 src/coclust/src/Algorithms/GibbsAlgo.cpp | 19 src/coclust/src/Algorithms/SEMAlgo.cpp | 18 src/coclust/src/Initialization/CEMInit.h | 7 src/coclust/src/Initialization/EMInit.h | 8 src/coclust/src/Initialization/IInit.h | 21 src/coclust/src/Initialization/RandomInit.h | 9 src/coclust/src/InputParameters/InputParameters.cpp | 6 src/coclust/src/InputParameters/InputParameters.h | 53 src/coclust/src/Models/BinaryLBModel.cpp | 648 +----- src/coclust/src/Models/BinaryLBModel.h | 76 src/coclust/src/Models/BinaryLBModelequalepsilon.cpp | 585 ----- src/coclust/src/Models/BinaryLBModelequalepsilon.h | 111 - src/coclust/src/Models/CategoricalLBModel.cpp | 885 +------- src/coclust/src/Models/CategoricalLBModel.h | 74 src/coclust/src/Models/ContingencyLBModel.cpp | 613 ------ src/coclust/src/Models/ContingencyLBModel.h | 82 src/coclust/src/Models/ContingencyLBModel_mu_i_nu_j.cpp | 698 ------ src/coclust/src/Models/ContingencyLBModel_mu_i_nu_j.h | 73 src/coclust/src/Models/ContinuousLBModel.cpp | 413 ---- src/coclust/src/Models/ContinuousLBModel.h | 79 src/coclust/src/Models/ContinuousLBModelequalsigma.cpp | 376 --- src/coclust/src/Models/ContinuousLBModelequalsigma.h | 83 src/coclust/src/Models/ICoClustModel.cpp | 585 ++--- src/coclust/src/Models/ICoClustModel.h | 282 +- src/coclust/src/Strategy/IStrategy.h | 5 src/coclust/src/Strategy/XStrategyAlgo.cpp | 69 src/coclust/src/Strategy/XStrategyforSEMAlgo.cpp | 74 src/coclust/src/typedefs/typedef.h | 2 vignettes/blockcluster_tutorial.Rnw | 184 + 61 files changed, 3069 insertions(+), 5530 deletions(-)
Title: Tools to Support the Sheffield Elicitation Framework
Description: Implements various methods for eliciting a probability distribution
for a single parameter from an expert or a group of experts. The expert
provides a small number of probability judgements, corresponding
to points on his or her cumulative distribution function. A range of parametric
distributions can then be fitted and displayed, with feedback provided in the
form of fitted probabilities and percentiles. For multiple experts, a weighted
linear pool can be calculated. Also includes functions for eliciting beliefs
about population distributions, eliciting multivariate distributions using a
Gaussian copula, eliciting a Dirichlet distribution, and eliciting distributions
for variance parameters in a random effects meta-analysis model. R Shiny apps
for most of the methods are included.
Author: Jeremy Oakley
Maintainer: Jeremy Oakley <j.oakley@sheffield.ac.uk>
Diff between SHELF versions 1.4.0 dated 2018-08-16 and 1.5.0 dated 2019-03-26
SHELF-1.4.0/SHELF/man/roulette.Rd |only SHELF-1.5.0/SHELF/DESCRIPTION | 21 SHELF-1.5.0/SHELF/MD5 | 106 +-- SHELF-1.5.0/SHELF/NAMESPACE | 4 SHELF-1.5.0/SHELF/R/SHELF-package.R | 7 SHELF-1.5.0/SHELF/R/cdfHelperfunctions.R | 13 SHELF-1.5.0/SHELF/R/elicit.R | 460 ++++++++++++-- SHELF-1.5.0/SHELF/R/elicitBivariate.R |only SHELF-1.5.0/SHELF/R/elicitCopula.R | 25 SHELF-1.5.0/SHELF/R/elicitDirichlet.R | 379 ++++++----- SHELF-1.5.0/SHELF/R/elicitMarginalsModule.R |only SHELF-1.5.0/SHELF/R/elicitMultipleExperts.R |only SHELF-1.5.0/SHELF/R/expertdensity.R | 26 SHELF-1.5.0/SHELF/R/expertprobs.R | 26 SHELF-1.5.0/SHELF/R/expertquantiles.R | 20 SHELF-1.5.0/SHELF/R/feedbackgroup.R | 17 SHELF-1.5.0/SHELF/R/feedbacksingle.R | 63 + SHELF-1.5.0/SHELF/R/fitDirichlet.R |only SHELF-1.5.0/SHELF/R/fitdist.R | 19 SHELF-1.5.0/SHELF/R/fitprecision.R | 102 ++- SHELF-1.5.0/SHELF/R/linearPoolDensity.R | 2 SHELF-1.5.0/SHELF/R/makeCDFPlot.R |only SHELF-1.5.0/SHELF/R/makeGroupPlot.R | 13 SHELF-1.5.0/SHELF/R/makeLinearPoolPlot.R | 19 SHELF-1.5.0/SHELF/R/makeQuartilePlot.R |only SHELF-1.5.0/SHELF/R/makeSingleExpertPlot.R | 18 SHELF-1.5.0/SHELF/R/makeTertilePlot.R |only SHELF-1.5.0/SHELF/R/phist.R | 6 SHELF-1.5.0/SHELF/R/plinearpool.R | 2 SHELF-1.5.0/SHELF/R/plotQuartiles.R | 9 SHELF-1.5.0/SHELF/R/plotTertiles.R | 14 SHELF-1.5.0/SHELF/R/plotfit.R | 31 SHELF-1.5.0/SHELF/R/qhist.R | 6 SHELF-1.5.0/SHELF/R/qlinearpool.R | 5 SHELF-1.5.0/SHELF/R/roulette.R | 146 ---- SHELF-1.5.0/SHELF/R/sampleFit.R |only SHELF-1.5.0/SHELF/R/shinyplotsingle.R | 21 SHELF-1.5.0/SHELF/R/t.error.R | 6 SHELF-1.5.0/SHELF/build/vignette.rds |binary SHELF-1.5.0/SHELF/inst/NEWS.md | 25 SHELF-1.5.0/SHELF/inst/doc/Dirichlet-elicitation.pdf |binary SHELF-1.5.0/SHELF/inst/doc/Multivariate-normal-copula.pdf |binary SHELF-1.5.0/SHELF/inst/doc/SHELF-overview.pdf |binary SHELF-1.5.0/SHELF/inst/shinyAppFiles |only SHELF-1.5.0/SHELF/man/SHELF-package.Rd | 7 SHELF-1.5.0/SHELF/man/copulaSample.Rd | 2 SHELF-1.5.0/SHELF/man/elicit.Rd | 20 SHELF-1.5.0/SHELF/man/elicitBivariate.Rd |only SHELF-1.5.0/SHELF/man/elicitDirichlet.Rd |only SHELF-1.5.0/SHELF/man/elicitMultiple.Rd |only SHELF-1.5.0/SHELF/man/feedbackDirichlet.Rd | 3 SHELF-1.5.0/SHELF/man/fitDirichlet.Rd | 23 SHELF-1.5.0/SHELF/man/fitprecision.Rd | 17 SHELF-1.5.0/SHELF/man/plotQuartiles.Rd | 4 SHELF-1.5.0/SHELF/man/plotTertiles.Rd | 6 SHELF-1.5.0/SHELF/man/plotfit.Rd | 5 SHELF-1.5.0/SHELF/man/sampleFit.Rd |only SHELF-1.5.0/SHELF/tests/testthat/test-fitting.R | 117 +++ 58 files changed, 1248 insertions(+), 567 deletions(-)
Title: A Platform for the Study of Macro-Ecology of Life History Traits
Description: Tools for easy generation of (life-history) traits maps based on
species range (extent-of-occurrence) maps.
Author: Mihai Valcu [aut, cre],
James Dale [aut],
Joan Maspons [ctb]
Maintainer: Mihai Valcu <valcu@orn.mpg.de>
Diff between rangeMapper versions 0.3-4 dated 2018-06-30 and 0.3-5 dated 2019-03-26
DESCRIPTION | 12 MD5 | 42 +- NAMESPACE | 6 NEWS | 4 R/AAA.R | 8 R/MapProcess-methods.R | 79 ++-- R/MapSave-methods.R | 44 -- build/vignette.rds |binary inst/doc/Appendix_S2_Valcu_et_al_2012.R | 2 inst/doc/Appendix_S2_Valcu_et_al_2012.Rmd | 4 inst/doc/Appendix_S2_Valcu_et_al_2012.html | 530 ++++++++++++++++++++--------- inst/doc/Appendix_S3_Valcu_et_al_2012.html | 377 ++++++++++++++++---- inst/doc/Appendix_S4_Valcu_et_al_2012.html | 384 ++++++++++++++++----- inst/doc/Appendix_S5_Valcu_et_al_2012.html | 431 ++++++++++++++++++----- man/assemblageFetch.Rd | 3 man/gridSize.save.Rd | 1 man/plot-rmap.frame-missing-method.Rd | 5 man/processRanges.Rd | 27 - man/rangeMap.save.Rd | 8 tests/testthat/test-1_projectINI.R | 2 tests/testthat/test-2_processRanges.R | 30 - vignettes/Appendix_S2_Valcu_et_al_2012.Rmd | 4 22 files changed, 1458 insertions(+), 545 deletions(-)
Title: Procedures for Ecological Assessment of Surface Waters
Description: Functions for evaluating and visualizing
ecological assessment procedures for surface waters
containing physical, chemical and biological assessments
in the form of value functions.
Author: Nele Schuwirth <nele.schuwirth@eawag.ch> and Peter Reichert <peter.reichert@eawag.ch>
with contributions by Simone Langhans and Christian Michel
Maintainer: Nele Schuwirth <nele.schuwirth@eawag.ch>
Diff between ecoval versions 1.2.2 dated 2019-03-18 and 1.2.3 dated 2019-03-26
DESCRIPTION | 8 +- MD5 | 26 ++++---- R/msk.macrophytes.2017.calc.types.r | 80 ++++++++++++++++++++++--- R/msk.macrophytes.2017.doc.R | 11 ++- R/msk.macrophytes.2017.prepare.data.R | 2 R/msk.macrophytes.2017.read.compile.evaluate.R | 3 data/ecoval_data.RData |binary inst/NEWS | 9 ++ inst/ecoval.dictionaries.default.dat | 14 ++-- man/ecoval-package.Rd | 4 - man/figures/lakemorphol2016.pdf |binary man/figures/lakemorphol2016French.pdf |binary man/figures/lakemorphol2016German.pdf |binary man/msk.macrophytes.2017.plot.types.scheme.Rd | 5 + 14 files changed, 123 insertions(+), 39 deletions(-)
Title: Network Visualization using 'vis.js' Library
Description: Provides an R interface to the 'vis.js' JavaScript charting
library. It allows an interactive visualization of networks.
Author: Almende B.V. [aut, cph] (vis.js library in htmlwidgets/lib,
http://visjs.org, http://www.almende.com/home),
Benoit Thieurmel [aut, cre] (R interface),
Titouan Robert [aut, ctb]
Maintainer: Benoit Thieurmel <benoit.thieurmel@datastorm.fr>
Diff between visNetwork versions 2.0.5 dated 2018-12-05 and 2.0.6 dated 2019-03-26
visNetwork-2.0.5/visNetwork/inst/doc/css |only visNetwork-2.0.5/visNetwork/inst/doc/js |only visNetwork-2.0.5/visNetwork/inst/doc/network |only visNetwork-2.0.6/visNetwork/DESCRIPTION | 10 visNetwork-2.0.6/visNetwork/MD5 | 158 +++++----- visNetwork-2.0.6/visNetwork/NEWS | 4 visNetwork-2.0.6/visNetwork/R/dependencies.R | 14 visNetwork-2.0.6/visNetwork/R/visDocumentation.R | 6 visNetwork-2.0.6/visNetwork/README.md | 20 - visNetwork-2.0.6/visNetwork/build/vignette.rds |binary visNetwork-2.0.6/visNetwork/inst/doc/Introduction-to-visNetwork.html | 126 ++++--- visNetwork-2.0.6/visNetwork/inst/docjs |only visNetwork-2.0.6/visNetwork/inst/htmlwidgets/visNetwork.js | 6 visNetwork-2.0.6/visNetwork/man/addFontAwesome.Rd | 8 visNetwork-2.0.6/visNetwork/man/addIonicons.Rd | 4 visNetwork-2.0.6/visNetwork/man/visClusteringByGroup.Rd | 3 visNetwork-2.0.6/visNetwork/man/visEdges.Rd | 14 visNetwork-2.0.6/visNetwork/man/visEvents.Rd | 11 visNetwork-2.0.6/visNetwork/man/visFit.Rd | 4 visNetwork-2.0.6/visNetwork/man/visFocus.Rd | 5 visNetwork-2.0.6/visNetwork/man/visGetConnectedEdges.Rd | 3 visNetwork-2.0.6/visNetwork/man/visGetConnectedNodes.Rd | 3 visNetwork-2.0.6/visNetwork/man/visGetNodes.Rd | 3 visNetwork-2.0.6/visNetwork/man/visGetPositions.Rd | 3 visNetwork-2.0.6/visNetwork/man/visHclust.Rd | 33 +- visNetwork-2.0.6/visNetwork/man/visHierarchicalLayout.Rd | 4 visNetwork-2.0.6/visNetwork/man/visInteraction.Rd | 4 visNetwork-2.0.6/visNetwork/man/visNetwork-collapse.Rd | 5 visNetwork-2.0.6/visNetwork/man/visNetwork-igraph.Rd | 4 visNetwork-2.0.6/visNetwork/man/visNetwork-shiny.Rd | 1 visNetwork-2.0.6/visNetwork/man/visNetwork-treeModule.Rd | 19 - visNetwork-2.0.6/visNetwork/man/visOptions.Rd | 7 visNetwork-2.0.6/visNetwork/man/visPhysics.Rd | 7 visNetwork-2.0.6/visNetwork/man/visSetSelection.Rd | 4 visNetwork-2.0.6/visNetwork/man/visTree.Rd | 25 - 35 files changed, 279 insertions(+), 239 deletions(-)
Title: Network-Based Genome Wide Association Studies
Description: A multi-core R package that contains a set of tools based on undirected graphical
models for accomplishing three important and interrelated goals in genetics: (1)
linkage map construction, (2) reconstructing intra- and inter-chromosomal conditional
interactions (linkage disequilibrium) networks, and (3) exploring high-dimensional
genotype-phenotype network and genotype-phenotype-environment interactions network.
We use conditional independence relationships between variables.
The netgwas package can deal with biparental inbreeding and outbreeding species with
any ploidy level, namely diploid (2 sets of chromosomes), triploid (3 sets of chromosomes),
tetraploid (4 sets of chromosomes) and so on. We target on high-dimensional data where
number of variables p is larger than number of sample sizes (p >> n). The computations
is memory-optimized using the sparse matrix output. The package is implemented the recent
developments in Behrouzi and Wit (2017) <doi:10.1111/rssc.12287> and Behrouzi and Wit (2017)
<arXiv:1710.01063>.
NOTICE proper functionality of 'netgwas' requires that the 'RBGL' package is installed from 'bioconductor'; for installation instruction please refer to the 'RBGL' web page given below.
Author: Pariya Behrouzi <https://orcid.org/0000-0001-6762-5433> and Ernst C. Wit
Maintainer: Pariya Behrouzi <pariya.behrouzi@gmail.com>
Diff between netgwas versions 1.8.1 dated 2019-02-16 and 1.9 dated 2019-03-26
DESCRIPTION | 8 +- MD5 | 12 +-- R/netmap.R | 17 ++-- R/netphenogeno.R | 2 R/netsnp.R | 1 R/selectnet.R | 209 ++++++++++++++++++++++++++++++++++++----------------- man/plot.select.Rd | 25 ++++-- 7 files changed, 182 insertions(+), 92 deletions(-)
Title: Analyze Dose-Volume Histograms and Check Constraints
Description: Functionality for analyzing dose-volume histograms (DVH)
in radiation oncology: Read DVH text files, calculate DVH
metrics as well as generalized equivalent uniform dose (gEUD),
biologically effective dose (BED), equivalent dose in 2 Gy
fractions (EQD2), normal tissue complication probability
(NTCP), and tumor control probability (TCP). Show DVH
diagrams, check and visualize quality assurance constraints
for the DVH. Includes web-based graphical user interface.
Author: Daniel Wollschlaeger [aut, cre],
Heiko Karle [aut],
Heinz Schmidberger [ctb]
Maintainer: Daniel Wollschlaeger <wollschlaeger@uni-mainz.de>
Diff between DVHmetrics versions 0.3.7 dated 2017-11-22 and 0.3.8 dated 2019-03-26
DESCRIPTION | 11 ++--- MD5 | 80 +++++++++++++++++++------------------- NAMESPACE | 2 R/checkConstraint.R | 46 +++++++++++----------- R/dvhDistance.R | 4 - R/getDMEAN.R | 3 + R/getEUD.R | 15 +++++-- R/getMetric.R | 6 +- R/parseHiArt.R | 95 +++++++++++++++++++++++++++++++++------------- R/parseMasterplan.R | 4 - R/parseMonaco.R | 10 ++-- R/parsePRIMO.R | 34 ++++++++-------- R/parsePRIMO_v015.R | 4 - R/parsePinnacleDVH.R | 20 ++++----- R/parseProSoma.R | 4 - R/parseRayStation.R | 8 +-- R/readDVH.R | 16 +++---- R/showConstraint.R | 39 ++++++++++++------ R/showDVH.R | 12 ++--- R/unix/parseDVH.R | 14 ++++-- R/utils.R |only R/windows/parseDVH.R | 15 +++++-- build/vignette.rds |binary data/dataConstr.rda |binary data/dataMZ.rda |binary inst/ChangeLog | 16 +++++++ inst/DVHshiny/ABOUT.html |only inst/DVHshiny/ABOUT.md | 16 +++---- inst/DVHshiny/server.R | 6 ++ inst/DVHshiny/ui.R | 4 + inst/doc/DVHmetrics.Rnw | 2 inst/doc/DVHmetrics.pdf |binary inst/doc/DVHshiny.Rnw | 2 inst/doc/DVHshiny.pdf |binary man/DVHmetrics-package.Rd | 4 - man/checkConstraint.Rd | 2 man/dataMZ.Rd | 2 man/getEQD2.Rd | 2 man/getMetric.Rd | 6 +- man/readDVH.Rd | 17 +++++--- vignettes/DVHmetrics.Rnw | 2 vignettes/DVHshiny.Rnw | 2 42 files changed, 317 insertions(+), 208 deletions(-)
Title: Clean and Analyze Continuous Glucose Monitor Data
Description: This code provides several different functions for cleaning and analyzing continuous glucose monitor data. Currently it works with 'Dexcom' (<https://www.dexcom.com>), 'iPro 2' (<http://professional.medtronicdiabetes.com/ipro2-professional-cgm>), Diasend (<https://diasend.com//us>), Libre (<https://www.freestylelibre.us/>) or Carelink (<https://www.medtronicdiabetes.com/products/carelink-personal-diabetes-software>) data. The cleandata() function takes a directory of CGM data files and prepares them for analysis. cgmvariables() iterates through a directory of cleaned CGM data files and produces a single spreadsheet with data for each file in either rows or columns. The column format of this spreadsheet is compatible with REDCap data upload ("--1" is added to each subject ID automatically for double data entry). cgmreport() also iterates through a directory of cleaned data, and produces PDFs of individual and aggregate AGP plots. Please visit <https://github.com/childhealthbiostatscore/R-Packages/> to download the new-user guide.
Author: Tim Vigers [aut, cre]
Maintainer: Tim Vigers <tim.b.vigers@gmail.com>
Diff between cgmanalysis versions 2.2 dated 2019-02-11 and 2.3 dated 2019-03-26
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/cgmvariables.R | 16 ++++++++++++---- man/cgmvariables.Rd | 5 ++++- 4 files changed, 22 insertions(+), 11 deletions(-)
Title: Credit Risk Scorecard
Description: The `scorecard` package makes the development of credit risk scorecard
easier and efficient by providing functions for some common tasks,
such as data partition, variable selection, woe binning, scorecard scaling,
performance evaluation and report generation. These functions can also used
in the development of machine learning models.
The references including:
1. Refaat, M. (2011, ISBN: 9781447511199). Credit Risk Scorecard:
Development and Implementation Using SAS.
2. Siddiqi, N. (2006, ISBN: 9780471754510). Credit risk scorecards.
Developing and Implementing Intelligent Credit Scoring.
Author: Shichen Xie [aut, cre]
Maintainer: Shichen Xie <xie@shichen.name>
Diff between scorecard versions 0.2.3 dated 2019-02-10 and 0.2.4 dated 2019-03-26
DESCRIPTION | 6 - MD5 | 38 ++++----- NEWS.md | 12 +++ R/condition_fun.R | 16 +++- R/germancredit.R | 2 R/perf.R | 86 ++++++++++++++------- R/report.R | 49 +++++++----- R/scorecard.R | 33 +++----- R/woebin.R | 203 +++++++++++++++++++++++++++++++++------------------ inst/doc/demo.html | 4 - man/gains_table.Rd | 10 +- man/germancredit.Rd | 2 man/perf_eva.Rd | 10 +- man/perf_psi.Rd | 13 ++- man/scorecard.Rd | 6 - man/scorecard2.Rd | 6 - man/scorecard_ply.Rd | 6 - man/woebin.Rd | 16 ++-- man/woebin_plot.Rd | 9 +- man/woebin_ply.Rd | 5 + 20 files changed, 333 insertions(+), 199 deletions(-)
Title: Names Your 'R Markdown' Chunks
Description: It names the 'R Markdown' chunks of files based on the filename.
Author: Steph Locke [aut, cre],
Maëlle Salmon [aut] (<https://orcid.org/0000-0002-2815-0399>),
Ellis Valentiner [ctb],
Martin Hadley [ctb] (<https://orcid.org/0000-0002-3039-6849>),
Locke Data [fnd] (https://itsalocke.com)
Maintainer: Steph Locke <steph@itsalocke.com>
Diff between namer versions 0.1.3 dated 2018-10-30 and 0.1.4 dated 2019-03-26
DESCRIPTION | 13 MD5 | 34 + NAMESPACE | 14 NEWS.md | 51 +- R/name_chunks.R | 247 +++++++------- R/unname_all_chunks.R | 82 ++-- R/utils.R | 18 - build/vignette.rds |binary inst/doc/namer.R | 12 inst/doc/namer.Rmd | 92 ++--- inst/doc/namer.html | 665 +++++++++++++++++++------------------- inst/examples/example5.Rmd |only inst/examples/example6.Rmd |only man/name_chunks.Rd | 60 +-- man/name_dir_chunks.Rd | 72 ++-- man/pipe.Rd | 24 - man/unname_all_chunks.Rd | 58 +-- tests/testthat/test-name_chunks.R | 10 vignettes/namer.Rmd | 92 ++--- 19 files changed, 804 insertions(+), 740 deletions(-)
Title: Vehicular Emissions Inventories
Description: Elaboration of vehicular emissions inventories,
consisting in four stages, pre-processing activity data, preparing
emissions factors, estimating the emissions and post-processing of emissions
in maps and databases. More details in Ibarra-Espinosa et al (2018) <doi:10.5194/gmd-11-2209-2018>.
Before using VEIN you need to know the vehicular composition of your study area, in other words,
the combination of of type of vehicles, size and fuel of the fleet. Then, it is recommended to
start with the function inventory to create a structure of directories and template scripts.
Author: Sergio Ibarra-Espinosa [aut, cre]
(<https://orcid.org/0000-0002-3162-1905>),
Daniel Schuch [ctb] (<https://orcid.org/0000-0001-5977-4519>)
Maintainer: Sergio Ibarra-Espinosa <sergio.ibarra@usp.br>
Diff between vein versions 0.6.0 dated 2019-01-12 and 0.7.0 dated 2019-03-26
vein-0.6.0/vein/man/EmissionsList.Rd |only vein-0.6.0/vein/man/Evaporative.Rd |only vein-0.6.0/vein/man/hot_soak.Rd |only vein-0.6.0/vein/man/running_losses.Rd |only vein-0.6.0/vein/tests/testthat/test-EmissionsList.R |only vein-0.6.0/vein/tests/testthat/test-hot_soak.R |only vein-0.6.0/vein/tests/testthat/test-running_losses.R |only vein-0.7.0/vein/DESCRIPTION | 13 vein-0.7.0/vein/MD5 | 144 ++--- vein-0.7.0/vein/NAMESPACE | 8 vein-0.7.0/vein/NEWS.md | 105 +++ vein-0.7.0/vein/R/Emissions.R | 8 vein-0.7.0/vein/R/EmissionsArray.R | 3 vein-0.7.0/vein/R/EmissionsList.R | 76 -- vein-0.7.0/vein/R/Evaporative.R | 36 - vein-0.7.0/vein/R/Vehicles.R | 22 vein-0.7.0/vein/R/age.R |only vein-0.7.0/vein/R/age_hdv.R | 49 + vein-0.7.0/vein/R/age_ldv.R | 50 + vein-0.7.0/vein/R/age_moto.R | 71 +- vein-0.7.0/vein/R/celsius.R |only vein-0.7.0/vein/R/cold_mileage.R |only vein-0.7.0/vein/R/ef_cetesb.R | 6 vein-0.7.0/vein/R/ef_evap.R | 276 +++++++++ vein-0.7.0/vein/R/ef_hdv_speed.R | 272 +++++++-- vein-0.7.0/vein/R/ef_ive.R | 4 vein-0.7.0/vein/R/ef_ldv_cold.R | 300 +++++++++- vein-0.7.0/vein/R/ef_ldv_speed.R | 330 +++++++++-- vein-0.7.0/vein/R/emis.R | 27 vein-0.7.0/vein/R/emis_cold.R | 159 +++-- vein-0.7.0/vein/R/emis_cold_td.R |only vein-0.7.0/vein/R/emis_det.R | 297 ++++++++-- vein-0.7.0/vein/R/emis_evap.R | 398 +++++++++----- vein-0.7.0/vein/R/emis_evap2.R |only vein-0.7.0/vein/R/emis_grid.R | 1 vein-0.7.0/vein/R/emis_hot_td.R |only vein-0.7.0/vein/R/emis_order.R | 9 vein-0.7.0/vein/R/fuel_corr.R | 43 - vein-0.7.0/vein/R/hot_soak.R | 19 vein-0.7.0/vein/R/my_age.R | 19 vein-0.7.0/vein/R/running_losses.R | 32 - vein-0.7.0/vein/R/split_emis.R |only vein-0.7.0/vein/R/sysdata.rda |binary vein-0.7.0/vein/R/vein-deprecated.R |only vein-0.7.0/vein/R/vein_notes.R | 101 +++ vein-0.7.0/vein/data/fkm.rda |binary vein-0.7.0/vein/demo/VEIN.R | 24 vein-0.7.0/vein/inst/README.Rmd | 92 ++- vein-0.7.0/vein/inst/README.html | 167 +++++ vein-0.7.0/vein/man/Vehicles.Rd | 7 vein-0.7.0/vein/man/age.Rd |only vein-0.7.0/vein/man/age_hdv.Rd | 9 vein-0.7.0/vein/man/age_ldv.Rd | 13 vein-0.7.0/vein/man/age_moto.Rd | 10 vein-0.7.0/vein/man/celsius.Rd |only vein-0.7.0/vein/man/cold_mileage.Rd |only vein-0.7.0/vein/man/ef_cetesb.Rd | 6 vein-0.7.0/vein/man/ef_evap.Rd | 60 +- vein-0.7.0/vein/man/ef_hdv_speed.Rd | 70 +- vein-0.7.0/vein/man/ef_ive.Rd | 4 vein-0.7.0/vein/man/ef_ldv_cold.Rd | 62 +- vein-0.7.0/vein/man/ef_ldv_speed.Rd | 103 ++- vein-0.7.0/vein/man/emis.Rd | 2 vein-0.7.0/vein/man/emis_cold.Rd | 11 vein-0.7.0/vein/man/emis_cold_td.Rd |only vein-0.7.0/vein/man/emis_det.Rd | 57 +- vein-0.7.0/vein/man/emis_evap.Rd | 147 +---- vein-0.7.0/vein/man/emis_evap2.Rd |only vein-0.7.0/vein/man/emis_hot_td.Rd |only vein-0.7.0/vein/man/fuel_corr.Rd | 30 - vein-0.7.0/vein/man/my_age.Rd | 8 vein-0.7.0/vein/man/running_losses-deprecated.Rd |only vein-0.7.0/vein/man/split_emis.Rd |only vein-0.7.0/vein/man/vein-deprecated.Rd |only vein-0.7.0/vein/man/vein-package.Rd | 5 vein-0.7.0/vein/man/vein_notes.Rd | 35 + vein-0.7.0/vein/tests/testthat/test-EmissionFactors.R | 2 vein-0.7.0/vein/tests/testthat/test-EmissionFactorsList.R | 2 vein-0.7.0/vein/tests/testthat/test-Emissions.R | 6 vein-0.7.0/vein/tests/testthat/test-EmissionsArray.R | 2 vein-0.7.0/vein/tests/testthat/test-ef_cetesb.R | 2 vein-0.7.0/vein/tests/testthat/test-ef_hdv_scaled.R | 4 vein-0.7.0/vein/tests/testthat/test-ef_ldv_scaled.R | 4 vein-0.7.0/vein/tests/testthat/test-emis_cold.R | 8 vein-0.7.0/vein/tests/testthat/test-emis_det.R | 9 85 files changed, 2823 insertions(+), 1016 deletions(-)
Title: Segregation Measures for Multitype Spatial Point Patterns
Description: Summaries for measuring segregation/mingling in multitype spatial
point patterns with graph based neighbourhood description. Included indices:
Mingling, Shannon, Simpson (also the non-spatial) Included functionals:
Mingling, Shannon, Simpson, ISAR, MCI. Included neighbourhoods: Geometric, k-
nearest neighbours, Gabriel, Delaunay. Dixon's test.
Author: Tuomas Rajala
Maintainer: Tuomas Rajala <tuomas.rajala@iki.fi>
Diff between spatialsegregation versions 2.44 dated 2017-04-18 and 2.45 dated 2019-03-26
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ man/isarF.Rd | 4 ++-- man/segregationFun.Rd | 7 ++++--- man/simpsonF.Rd | 1 - src/Graph.cpp | 2 +- src/Rextras.cpp | 2 +- 7 files changed, 19 insertions(+), 19 deletions(-)
More information about spatialsegregation at CRAN
Permanent link
Title: Quickly Create Elegant Regression Results Tables and Plots when
Modelling
Description: Generate regression results tables and plots in final
format for publication. Explore models and export directly to PDF
and 'Word' using 'RMarkdown'.
Author: Ewen Harrison [aut, cre],
Tom Drake [aut],
Riinu Ots [aut]
Maintainer: Ewen Harrison <ewen.harrison@ed.ac.uk>
Diff between finalfit versions 0.9.0 dated 2019-02-15 and 0.9.1 dated 2019-03-26
finalfit-0.9.0/finalfit/inst/doc/tables_gallery.R |only finalfit-0.9.0/finalfit/inst/doc/tables_gallery.Rmd |only finalfit-0.9.0/finalfit/inst/doc/tables_gallery.html |only finalfit-0.9.0/finalfit/man/summary_factorlist1.Rd |only finalfit-0.9.0/finalfit/man/summary_factorlist2.Rd |only finalfit-0.9.0/finalfit/man/summary_factorlist3.Rd |only finalfit-0.9.0/finalfit/man/summary_factorlist4.Rd |only finalfit-0.9.0/finalfit/man/summary_factorlist5.Rd |only finalfit-0.9.0/finalfit/vignettes/tables_gallery.Rmd |only finalfit-0.9.1/finalfit/DESCRIPTION | 6 finalfit-0.9.1/finalfit/MD5 | 75 - finalfit-0.9.1/finalfit/NAMESPACE | 2 finalfit-0.9.1/finalfit/NEWS.md | 6 finalfit-0.9.1/finalfit/R/finalfit_internal_functions.R | 71 - finalfit-0.9.1/finalfit/R/glmmixed.R | 5 finalfit-0.9.1/finalfit/R/glmmulti.R | 15 finalfit-0.9.1/finalfit/R/glmuni.R | 21 finalfit-0.9.1/finalfit/R/lmmixed.R | 5 finalfit-0.9.1/finalfit/R/lmmulti.R | 7 finalfit-0.9.1/finalfit/R/lmuni.R | 7 finalfit-0.9.1/finalfit/R/summaryfactorlist.R | 709 +--------- finalfit-0.9.1/finalfit/README.md | 36 finalfit-0.9.1/finalfit/build/vignette.rds |binary finalfit-0.9.1/finalfit/inst/doc/all_tables_examples.R |only finalfit-0.9.1/finalfit/inst/doc/all_tables_examples.Rmd |only finalfit-0.9.1/finalfit/inst/doc/all_tables_examples.html |only finalfit-0.9.1/finalfit/inst/doc/bootstrap.html | 22 finalfit-0.9.1/finalfit/inst/doc/data_prep.html | 98 - finalfit-0.9.1/finalfit/inst/doc/export.html | 46 finalfit-0.9.1/finalfit/inst/doc/missing.html | 76 - finalfit-0.9.1/finalfit/man/colname2label.Rd |only finalfit-0.9.1/finalfit/man/ff_eval.Rd |only finalfit-0.9.1/finalfit/man/format_n_percent.Rd |only finalfit-0.9.1/finalfit/man/glmmixed.Rd | 4 finalfit-0.9.1/finalfit/man/glmmulti.Rd | 9 finalfit-0.9.1/finalfit/man/glmuni.Rd | 9 finalfit-0.9.1/finalfit/man/lmmixed.Rd | 4 finalfit-0.9.1/finalfit/man/lmmulti.Rd | 4 finalfit-0.9.1/finalfit/man/lmuni.Rd | 4 finalfit-0.9.1/finalfit/man/summarise_categorical.Rd |only finalfit-0.9.1/finalfit/man/summarise_continuous.Rd |only finalfit-0.9.1/finalfit/man/summary_factorlist_groups.Rd |only finalfit-0.9.1/finalfit/tests/testthat/Rplots.pdf |binary finalfit-0.9.1/finalfit/tests/testthat/test_all_in_one.R | 5 finalfit-0.9.1/finalfit/tests/testthat/test_missing.R | 4 finalfit-0.9.1/finalfit/vignettes/all_tables_examples.Rmd |only finalfit-0.9.1/finalfit/vignettes/export_cache/html/__packages | 1 finalfit-0.9.1/finalfit/vignettes/export_cache/html/unnamed-chunk-8_7b1d29257e73baaeb9bec379b79b6c81.RData |binary 48 files changed, 469 insertions(+), 782 deletions(-)
Title: Download and Manage Data from Theia
Description: Provides a simple interface to search available data provided by
Theia (<https://theia.cnes.fr>), download it, and manage it. Data can be downloaded
based on a search result or from a cart file downloaded from Theia website.
Author: Xavier Laviron [aut, cre] (<https://orcid.org/0000-0002-9882-3253>)
Maintainer: Xavier Laviron <xavier.laviron@gmx.fr>
Diff between theiaR versions 0.1.0 dated 2019-02-27 and 0.2.0 dated 2019-03-26
DESCRIPTION | 8 +- MD5 | 32 +++++----- NEWS.md | 29 +++++++++ R/TheiaCollection.R | 103 ++++++++++++++++------------------ R/TheiaQuery.R | 105 ++++++++++++++++++++--------------- R/TheiaTile.R | 137 ++++++++++++++++++++++++++++++++++------------ R/utils.R | 68 ++++++++-------------- README.md | 118 ++++++++++++++++++++++++++------------- build/vignette.rds |binary inst/WORDLIST | 6 ++ inst/doc/quick-start.R | 14 ++++ inst/doc/quick-start.Rmd | 52 +++++++++++++++-- inst/doc/quick-start.html | 62 +++++++++++++++++--- man/TheiaCollection.Rd | 15 +++-- man/TheiaQuery.Rd | 8 ++ man/TheiaTile.Rd | 14 +++- vignettes/quick-start.Rmd | 52 +++++++++++++++-- 17 files changed, 556 insertions(+), 267 deletions(-)
Title: Interface to the 'HDF5' Binary Data Format
Description: 'HDF5' is a data model, library and file format for storing
and managing large amounts of data. This package provides a nearly
feature complete, object oriented wrapper for the 'HDF5' API
<https://support.hdfgroup.org/HDF5/doc/RM/RM_H5Front.html> using R6 classes.
Additionally, functionality is added so that 'HDF5' objects behave very
similar to their corresponding R counterparts.
Author: Holger Hoefling [aut, cre],
Mario Annau [aut],
Novartis Institute for BioMedical Research (NIBR) [cph]
Maintainer: Holger Hoefling <hhoeflin@gmail.com>
Diff between hdf5r versions 1.0.1 dated 2018-10-07 and 1.1.1 dated 2019-03-26
DESCRIPTION | 8 MD5 | 100 +- R/Common_functions.R | 122 +-- R/R6Classes.R | 2 R/R6Classes_H5A.R | 14 R/R6Classes_H5D.R | 28 R/R6Classes_H5File.R | 10 R/R6Classes_H5P.R | 142 ++-- R/R6Classes_H5R.R | 4 R/R6Classes_H5S.R | 48 - R/R6Classes_H5T.R | 78 +- R/adapt_during_onLoad.R | 6 R/high_level_UI.R | 4 configure | 52 + configure.ac | 8 inst/doc/hdf5r.Rmd | 2 inst/doc/hdf5r.html | 1268 +++++++++++++++++++++++++------------- man/H5A-class.Rd | 18 man/H5D-class.Rd | 66 - man/H5File-class.Rd | 122 +-- man/H5Group-class.Rd | 112 +-- man/H5P-class.Rd | 8 man/H5P_ATTRIBUTE_CREATE-class.Rd | 4 man/H5P_CLASS-class.Rd | 2 man/H5P_DATASET_ACCESS-class.Rd | 4 man/H5P_DATASET_CREATE-class.Rd | 50 - man/H5P_DATASET_XFER-class.Rd | 14 man/H5P_FILE_ACCESS-class.Rd | 4 man/H5P_FILE_CREATE-class.Rd | 20 man/H5P_LINK_ACCESS-class.Rd | 12 man/H5P_LINK_CREATE-class.Rd | 8 man/H5P_OBJECT_COPY-class.Rd | 4 man/H5P_OBJECT_CREATE-class.Rd | 12 man/H5R_DATASET_REGION-class.Rd | 2 man/H5R_OBJECT-class.Rd | 2 man/H5R_functions.Rd | 3 man/H5RefClass-class.Rd | 12 man/H5S-class.Rd | 50 - man/H5S_H5D_subset_assign.Rd | 4 man/H5T-class.Rd | 72 +- man/H5T_ARRAY-class.Rd | 6 man/H5T_COMPOUND-class.Rd | 2 man/H5T_FLOAT-class.Rd | 16 man/H5T_INTEGER-class.Rd | 4 man/H5T_STRING-class.Rd | 10 man/H5T_VLEN-class.Rd | 2 man/list-groups-datasets.Rd | 12 man/text_to_dtype.Rd | 2 src/H5Error.c | 10 src/convert.c | 148 ++-- vignettes/hdf5r.Rmd | 2 51 files changed, 1600 insertions(+), 1115 deletions(-)
Title: Conditional Maximum Likelihood for Quadratic Exponential Models
for Binary Panel Data
Description: Estimation, based on conditional maximum likelihood, of the quadratic exponential model proposed by Bartolucci, F. & Nigro, V. (2010, Econometrica) <DOI:10.3982/ECTA7531> and of a simplified and a modified version of this model. The quadratic exponential model is suitable for the analysis of binary longitudinal data when state dependence (further to the effect of the covariates and a time-fixed individual intercept) has to be taken into account. Therefore, this is an alternative to the dynamic logit model having the advantage of easily allowing conditional inference in order to eliminate the individual intercepts and then getting consistent estimates of the parameters of main interest (for the covariates and the lagged response). The simplified version of this model does not distinguish, as the original model does, between the last time occasion and the previous occasions. The modified version formulates in a different way the interaction terms and it may be used to test in a easy way state dependence as shown in Bartolucci, F., Nigro, V. & Pigini, C. (2018, Econometric Reviews) <DOI:10.1080/07474938.2015.1060039>. The package also includes estimation of the dynamic logit model by a pseudo conditional estimator based on the quadratic exponential model, as proposed by Bartolucci, F. & Nigro, V. (2012, Journal of Econometrics) <DOI:10.1016/j.jeconom.2012.03.004>. For large time dimensions of the panel, the computation of the proposed models involves a recursive function adapted from Krailo M. D., & Pike M. C. (1984, Journal of the Royal Statistical Society. Series C (Applied Statistics)).
Author: Francesco Bartolucci (University of Perugia), Claudia Pigini (University of Ancona "Politecnica delle Marche"), Francesco Valentini (University of Ancona "Politecnica delle Marche")
Maintainer: Francesco Bartolucci <francesco.bartolucci@unipg.it>
Diff between cquad versions 1.4 dated 2017-06-06 and 2.0 dated 2019-03-26
DESCRIPTION | 12 - MD5 | 34 ++- R/cquad.R | 18 +- R/cquad_basic.R | 200 ++++++++++++---------- R/cquad_equ.R | 27 ++- R/cquad_ext.R | 8 R/cquad_pseudo.R | 426 +++++++++++++++++++++++++++--------------------- R/quasi_sym.R |only R/quasi_sym_equ.R |only R/quasi_sym_pseudo.R |only man/cquad-package.Rd | 16 + man/cquad.Rd | 17 + man/cquad_basic.Rd | 12 - man/cquad_equ.Rd | 16 + man/cquad_ext.Rd | 9 - man/cquad_pseudo.Rd | 9 - man/print.cquad.Rd | 2 man/quasi_sym.Rd |only man/quasi_sym_equ.Rd |only man/quasi_sym_pseudo.Rd |only man/sim_panel_logit.Rd | 3 21 files changed, 475 insertions(+), 334 deletions(-)
Title: K* Nearest Neighbors Algorithm
Description: Prediction with k* nearest neighbor algorithm
based on a publication by Anava and Levy (2016) <arXiv:1701.07266>.
Author: Kei Nakagawa [aut, cre] (<https://orcid.org/0000-0001-5046-8128>),
Shingo Sashida [aut]
Maintainer: Kei Nakagawa <kei.nak.0315@gmail.com>
Diff between ksNN versions 0.1.0 dated 2019-03-24 and 0.1.1 dated 2019-03-26
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification and
regression models.
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer, Allan Engelhardt, Tony Cooper, Zachary Mayer,
Brenton Kenkel, the R Core Team, Michael Benesty, Reynald Lescarbeau,
Andrew Ziem, Luca Scrucca, Yuan Tang, Can Candan, and Tyler Hunt.
Maintainer: Max Kuhn <mxkuhn@gmail.com>
Diff between caret versions 6.0-81 dated 2018-11-20 and 6.0-82 dated 2019-03-26
caret-6.0-81/caret/R/recipes.R |only caret-6.0-81/caret/man/learing_curve_dat.Rd |only caret-6.0-82/caret/DESCRIPTION | 11 caret-6.0-82/caret/MD5 | 71 - caret-6.0-82/caret/NAMESPACE | 12 caret-6.0-82/caret/R/aaa.R | 2 caret-6.0-82/caret/R/adaptive.R | 14 caret-6.0-82/caret/R/confusionMatrix.R | 2 caret-6.0-82/caret/R/dummyVar.R | 36 caret-6.0-82/caret/R/gafs.R | 529 ++++++++-- caret-6.0-82/caret/R/ggplot.R | 13 caret-6.0-82/caret/R/learning_curve.R | 25 caret-6.0-82/caret/R/resamples.R | 12 caret-6.0-82/caret/R/rfe.R | 779 ++++++++++++++- caret-6.0-82/caret/R/safs.R | 430 +++++++- caret-6.0-82/caret/R/selectByFilter.R | 549 ++++++++-- caret-6.0-82/caret/R/train.default.R | 2 caret-6.0-82/caret/R/train_recipes.R |only caret-6.0-82/caret/R/updates.R | 85 + caret-6.0-82/caret/R/workflows.R | 78 - caret-6.0-82/caret/build/vignette.rds |binary caret-6.0-82/caret/inst/NEWS.Rd | 20 caret-6.0-82/caret/inst/doc/caret.html | 205 ++- caret-6.0-82/caret/inst/models/models.RData |binary caret-6.0-82/caret/man/caret-internal.Rd | 3 caret-6.0-82/caret/man/dummyVars.Rd | 2 caret-6.0-82/caret/man/gafs.default.Rd | 16 caret-6.0-82/caret/man/learning_curve_dat.Rd |only caret-6.0-82/caret/man/plot.gafs.Rd | 17 caret-6.0-82/caret/man/plot.rfe.Rd | 5 caret-6.0-82/caret/man/rfe.Rd | 38 caret-6.0-82/caret/man/safs.Rd | 22 caret-6.0-82/caret/man/safs_initial.Rd | 2 caret-6.0-82/caret/man/sbf.Rd | 5 caret-6.0-82/caret/man/update.safs.Rd | 2 caret-6.0-82/caret/tests/testthat/test_Dummies.R | 121 +- caret-6.0-82/caret/tests/testthat/test_recipe_fs.R |only caret-6.0-82/caret/tests/testthat/test_resamples.R |only caret-6.0-82/caret/tests/testthat/test_twoClassSummary.R | 52 - caret-6.0-82/caret/tests/testthat/test_updates.R |only 40 files changed, 2588 insertions(+), 572 deletions(-)
Title: Testing and Plotting Procedures for Biostatistics
Description: Contains miscellaneous functions useful in biostatistics, mostly univariate and multivariate testing procedures with a special emphasis on permutation tests. Many functions intend to simplify user's life by shortening existing procedures or by implementing plotting functions that can be used with as many methods from different packages as possible.
Author: Maxime Hervé
Maintainer: Maxime Hervé <maxime.herve@univ-rennes1.fr>
Diff between RVAideMemoire versions 0.9-72 dated 2019-02-11 and 0.9-73 dated 2019-03-26
DESCRIPTION | 8 ++-- MD5 | 30 +++++++++--------- NEWS | 4 ++ R/MVA.cmv.R | 43 ++++++++++++++++---------- R/MVA.cor.R | 6 +++ R/MVA.cv.R | 49 +++++++++++++++++++----------- R/MVA.load.R | 4 +- R/predict.CDA.cv.R | 18 +++++++---- R/predict.MVA.cv.R | 70 +++++++++++++++++++++++++++++++------------ R/zzz.R | 2 - man/MVA.cmv.Rd | 2 - man/MVA.cv.Rd | 2 - man/RVAideMemoire-package.Rd | 4 +- man/dendro.gp.Rd | 2 - man/predict.CDA.cv.Rd | 6 +++ man/predict.MVA.cv.Rd | 11 ++++-- 16 files changed, 171 insertions(+), 90 deletions(-)
Title: Data and Methods Around Reference Values in Pediatrics
Description: Calculation of standard deviation scores and percentiles adduced from different
growth standards (WHO, UK, Germany, Italy, China, etc). Therefore, the calculation of SDS-values
for different measures like BMI, weight, height, head circumference, different
ratios, etc. are easy to carry out. Also, references for laboratory values in
children and adults are available, e.g., serum lipids, iron-related blood parameters, IGF, liver enzymes. In the
new version, there are also functions combining the lms() function from package 'gamlss' with
resampling methods for using with repeated measurements and family dependencies. A searchable list
of items can be found here: <https://github.com/mvogel78/childsds/wiki>.
Author: Mandy Vogel [aut, cre]
Maintainer: Mandy Vogel <mandy.vogel@googlemail.com>
Diff between childsds versions 0.7.3 dated 2019-03-12 and 0.7.4 dated 2019-03-26
DESCRIPTION | 6 +++--- MD5 | 34 ++++++++++++++++++++-------------- NEWS.md | 9 +++++++++ R/data.R | 35 ++++++++++++++++++++++++++++++++--- R/sdsvals.r | 2 +- data/bp_wuehl_age.ref.rda |binary data/bp_wuehl_height.ref.rda |binary data/doyon_age.ref.rda |only data/doyon_height.ref.rda |only data/duran_bf.ref.rda |only man/bp_wuehl_age.ref.Rd | 10 +++++++--- man/bp_wuehl_height.ref.Rd | 8 ++++++-- man/do_iterations.Rd | 7 ++++--- man/doyon_age.ref.Rd |only man/doyon_height.ref.Rd |only man/duran_bf.ref.Rd |only man/fit_gamlss.Rd | 4 ++-- man/fit_gamlss1.Rd | 5 +++-- man/fit_vgam.Rd | 4 ++-- man/make_percentile_tab.Rd | 4 ++-- man/one_iteration.Rd | 7 ++++--- 21 files changed, 95 insertions(+), 40 deletions(-)
Title: Estimating Aboveground Biomass and Its Uncertainty in Tropical
Forests
Description: Contains functions to estimate aboveground biomass/carbon and its uncertainty in tropical forests.
These functions allow to (1) retrieve and to correct taxonomy, (2) estimate wood density and its uncertainty,
(3) construct height-diameter models, (4) manage tree and plot coordinates,
(5) estimate the aboveground biomass/carbon at the stand level with associated uncertainty.
To cite BIOMASS, please use citation("BIOMASS").
See more in the article of Réjou-Méchain et al. (2017) <doi:10.1111/2041-210X.12753>.
Author: Maxime Réjou-Méchain [aut, cre, dtc],
Ariane Tanguy [aut],
Camille Piponiot [aut],
Jerome Chave [dtc],
Bruno Herault [aut],
Arthur Pere [aut],
Guillaume Cornu [aut] (<https://orcid.org/0000-0002-7523-5176>),
Ted Feldpausch [dtc]
Maintainer: Maxime Réjou-Méchain <maxime.rejou@gmail.com>
Diff between BIOMASS versions 2.0 dated 2019-01-14 and 2.1 dated 2019-03-26
DESCRIPTION | 10 - MD5 | 65 ++++++----- NAMESPACE | 3 NEWS | 6 + R/attributeTree.R | 7 + R/attributeTreeCoord.R |only R/computeE.R | 2 R/correctCoordGPS.R | 45 +++++-- R/correctTaxo.R | 16 +- R/data_documentation.R | 5 R/latlong2UTM.R | 4 R/modelHD.R | 15 +- R/numberCorner.R | 8 - R/predictHeight.R | 4 R/procrust.R | 3 R/summaryByPlot.R | 164 ++++++++++++++++++---------- README.md | 2 build/vignette.rds |binary inst/doc/BIOMASS.html | 13 -- inst/doc/plot.R |only inst/doc/plot.Rmd |only inst/doc/plot.html |only inst/external/Coord.csv |only inst/external/NouraguesPlot.csv |only man/HDmethods.Rd | 3 man/apgFamilies.Rd | 2 man/attributeTreeCoord.Rd |only man/correctCoordGPS.Rd | 1 man/modelHD.Rd | 3 man/procrust.Rd | 3 man/summaryByPlot.Rd | 12 +- tests/testthat/test_00_correctTaxo.R | 14 +- tests/testthat/test_00_modelHD.R | 3 tests/testthat/test_01_correctCoordGPS.R | 15 +- tests/testthat/test_01_small_function.R | 10 + tests/testthat/test_02_attributeTree.R | 7 + tests/testthat/test_03_attributeTreeCoord.R |only vignettes/plot.Rmd |only 38 files changed, 279 insertions(+), 166 deletions(-)
Title: Likelihood Methods for Mediation Analysis
Description: Implements likelihood based methods for mediation analysis.
Author: Dr. Kai Wang
Maintainer: Kai Wang <kai-wang@uiowa.edu>
Diff between iMediate versions 0.5 dated 2018-08-31 and 0.5.5 dated 2019-03-26
iMediate-0.5.5/iMediate/DESCRIPTION | 12 - iMediate-0.5.5/iMediate/MD5 | 38 +-- iMediate-0.5.5/iMediate/NAMESPACE | 2 iMediate-0.5.5/iMediate/R/S.test.R | 1 iMediate-0.5.5/iMediate/R/figure.joint.prob.R | 5 iMediate-0.5.5/iMediate/R/figure.relative.power.R | 5 iMediate-0.5.5/iMediate/R/fimle.lnl.R | 136 +++++++++---- iMediate-0.5.5/iMediate/R/iMediate-package.R | 8 iMediate-0.5.5/iMediate/R/mdn.R | 195 +++++++++++++------ iMediate-0.5.5/iMediate/R/print.mdn.R | 30 +- iMediate-0.5.5/iMediate/R/pwr_mdn.R | 1 iMediate-0.5.5/iMediate/man/S.test.Rd | 1 iMediate-0.5.5/iMediate/man/figure.joint.prob.Rd | 5 iMediate-0.5.5/iMediate/man/figure.relative.power.Rd | 5 iMediate-0.5.5/iMediate/man/fimle.lnl.Rd | 23 +- iMediate-0.5.5/iMediate/man/iMediate-package.Rd | 9 iMediate-0.5.5/iMediate/man/mdn.Rd | 18 - iMediate-0.5.5/iMediate/man/print.mdn.Rd | 1 iMediate-0.5.5/iMediate/man/pwr.mdn.Rd | 1 iMediate-0.5/iMediate/R/delta.lnl.R |only iMediate-0.5/iMediate/man/delta.lnl.Rd |only 21 files changed, 322 insertions(+), 174 deletions(-)
Title: Analysis of Diffusion and Contagion Processes on Networks
Description: Empirical statistical analysis, visualization and simulation of
diffusion and contagion processes on networks. The package implements algorithms
for calculating network diffusion statistics such as transmission rate, hazard
rates, exposure models, network threshold levels, infectiousness (contagion),
and susceptibility. The package is inspired by work published in Valente,
et al., (2015) <DOI:10.1016/j.socscimed.2015.10.001>; Valente (1995) <ISBN:
9781881303213>, Myers (2000) <DOI:10.1086/303110>, Iyengar and others (2011)
<DOI:10.1287/mksc.1100.0566>, Burt (1987) <DOI:10.1086/228667>; among others.
Author: George Vega Yon [aut, cre] (<https://orcid.org/0000-0002-3171-0844>,
Rewrite functions with Rcpp, plus new features),
Thomas Valente [aut, cph] (<https://orcid.org/0000-0002-8824-5816>, R
original code),
Stephanie Dyal [ctb] (Package's first version),
Timothy Hayes [ctb] (Package's first version)
Maintainer: George Vega Yon <g.vegayon@gmail.com>
Diff between netdiffuseR versions 1.20.0 dated 2018-06-07 and 1.20.2 dated 2019-03-26
DESCRIPTION | 26 MD5 | 105 - NAMESPACE | 4 NEWS.md |only R/bootnet.r | 2 R/diffnet-methods.r | 2 R/imports.r | 2 R/misc.r | 2 R/plot_diffnet2.r | 2 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 7 inst/NEWS | 57 - inst/doc/analyzing-medical-innovation-data.html | 563 +++++++--- inst/doc/introduction-to-netdiffuser.html | 463 ++++++-- inst/doc/not-lost-in-translation-importing-and-exporting-graphs.html | 529 ++++++--- inst/doc/rdiffnets.R |only inst/doc/rdiffnets.Rmd |only inst/doc/rdiffnets.html |only inst/doc/time_discount_suscep_infect.html | 191 +++ man/bass.Rd | 4 man/bootnet.Rd | 11 man/dgr.Rd | 5 man/diag_expand.Rd | 6 man/diffnet-class.Rd | 11 man/diffusionMap.Rd | 4 man/drawColorKey.Rd | 7 man/edgelist_to_adjmat.Rd | 9 man/edges_coords.Rd | 4 man/egonet_attrs.Rd | 3 man/hazard_rate.Rd | 5 man/infection.Rd | 6 man/mentor_matching.Rd | 16 man/netmatch.Rd | 10 man/network.Rd | 4 man/plot.diffnet.Rd | 4 man/plot_adopters.Rd | 10 man/plot_diffnet.Rd | 9 man/plot_diffnet2.Rd | 13 man/plot_infectsuscep.Rd | 5 man/plot_threshold.Rd | 18 man/rdiffnet.Rd | 6 man/rescale_vertex_igraph.Rd | 12 man/rewire_graph.Rd | 5 man/struct_test.Rd | 9 man/survey_to_diffnet.Rd | 11 man/threshold.Rd | 4 man/transformGraphBy.Rd | 8 src/Makevars.in | 2 src/Makevars.win | 2 src/plot.cpp | 14 tests/testthat/test-adjmat.R | 2 tests/testthat/test-bass.r | 1 tests/testthat/test-diffnet-class.R | 7 tests/testthat/test-diffnet-indexing.R | 4 vignettes/rdiffnets.Rmd |only 56 files changed, 1577 insertions(+), 629 deletions(-)
Title: Linear Group Fixed Effects
Description: Transforms away factors with many levels prior to doing an OLS.
Useful for estimating linear models with multiple group fixed effects, and for
estimating linear models which uses factors with many levels as pure control variables.
Includes support for instrumental variables, conditional F statistics for weak instruments,
robust and multi-way clustered standard errors, as well as limited mobility bias correction.
Author: Simen Gaure [aut, cre]
Maintainer: Simen Gaure <Simen.Gaure@frisch.uio.no>
Diff between lfe versions 2.8-2 dated 2018-08-22 and 2.8-2.1 dated 2019-03-26
DESCRIPTION | 6 +- MD5 | 85 ++++++++++++++-------------- configure | 132 +++++++++++++++++++++++++++++++++++++++------ configure.ac | 10 ++- src/config.h.in | 41 +++++++++++++ tests/anomalies.R | 1 tests/anomalies.Rout.save | 7 +- tests/bctest.R | 1 tests/bctest.Rout.save | 7 +- tests/cgsolve.R | 1 tests/cgsolve.Rout.save | 9 +-- tests/cluster.R | 1 tests/cluster.Rout.save | 7 +- tests/comparelm.R | 1 tests/comparelm.Rout.save | 9 +-- tests/degenerate.R | 1 tests/degenerate.Rout.save | 23 ++++--- tests/efcheck.R | 1 tests/efcheck.Rout.save | 7 +- tests/fourfac.R | 1 tests/fourfac.Rout.save | 9 +-- tests/intact.R | 1 tests/intact.Rout.save | 7 +- tests/interact.R | 1 tests/interact.Rout.save | 7 +- tests/ivtest.R | 1 tests/ivtest.Rout.save | 9 +-- tests/lfetest.R | 1 tests/lfetest.Rout.save | 79 +++++++++++++------------- tests/mlhs.R | 1 tests/mlhs.Rout.save | 7 +- tests/multiway.R | 1 tests/multiway.Rout.save | 7 +- tests/naomit.R | 1 tests/naomit.Rout.save | 9 +-- tests/nonest.R | 1 tests/nonest.Rout.save | 9 +-- tests/onefac.R | 1 tests/onefac.Rout.save | 7 +- tests/verify.R | 1 tests/verify.Rout.save | 9 +-- tests/weights.R | 1 tests/weights.Rout.save | 7 +- tools |only 44 files changed, 353 insertions(+), 175 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-25 0.0-2
2019-03-18 0.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-18 0.1
Title: Dictionary-Based Sentiment Analysis
Description: Performs a sentiment analysis of textual contents in R. This implementation
utilizes various existing dictionaries, such as Harvard IV, or finance-specific
dictionaries. Furthermore, it can also create customized dictionaries. The latter
uses LASSO regularization as a statistical approach to select relevant terms based on
an exogenous response variable.
Author: Stefan Feuerriegel [aut, cre],
Nicolas Proellochs [aut]
Maintainer: Stefan Feuerriegel <sentiment@sfeuerriegel.com>
Diff between SentimentAnalysis versions 1.3-2 dated 2018-04-09 and 1.3-3 dated 2019-03-26
DESCRIPTION | 15 - LICENSE | 2 MD5 | 34 +-- NEWS | 9 R/SentimentDictionary.R | 2 R/analyzeSentiment.R | 2 README.md | 4 build/vignette.rds |binary inst/doc/SentimentAnalysis.Rmd | 6 inst/doc/SentimentAnalysis.html | 302 +++++++++++++++-------------- man/analyzeSentiment.Rd | 6 man/countWords.Rd | 12 - man/generateDictionary.Rd | 16 - man/predict.SentimentDictionaryWeighted.Rd | 4 man/spikeslabEstimation.Rd | 4 tests/testthat/test.analyzeSentiment.R | 2 vignettes/SentimentAnalysis.Rmd | 6 vignettes/bibliography.bib | 11 + 18 files changed, 241 insertions(+), 196 deletions(-)
More information about SentimentAnalysis at CRAN
Permanent link
Title: Language Server Protocol
Description: An implementation of the Language Server Protocol for R. The Language Server protocol is used by an editor client to integrate features like auto completion. See <https://microsoft.github.io/language-server-protocol> for details.
Author: Randy Lai
Maintainer: Randy Lai <randy.cs.lai@gmail.com>
Diff between languageserver versions 0.2.7 dated 2019-03-07 and 0.2.8 dated 2019-03-26
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/diagnostics.R | 29 +++-------------------------- R/interfaces.R | 2 +- README.md | 19 ++++++++++++++++++- man/find_config.Rd | 2 +- 6 files changed, 32 insertions(+), 38 deletions(-)
More information about languageserver at CRAN
Permanent link
Title: Estimating the Sample Mean and Standard Deviation from Commonly
Reported Quantiles in Meta-Analysis
Description: Implements the methods of McGrath et al. (2019) <arXiv:1903.10498>
for estimating the sample mean and standard deviation from commonly reported
quantiles in meta-analysis. These methods can be applied to studies that
report the sample median, sample size, and one or both of (i) the sample
minimum and maximum values and (ii) the first and third quartiles.
Author: Sean McGrath [aut, cre] (<https://orcid.org/0000-0002-7281-3516>),
XiaoFei Zhao [aut],
Russell Steele [aut],
Andrea Benedetti [aut] (<https://orcid.org/0000-0002-8314-9497>)
Maintainer: Sean McGrath <sean.mcgrath@mail.mcgill.ca>
Diff between estmeansd versions 0.1.1 dated 2019-02-04 and 0.2.0 dated 2019-03-26
DESCRIPTION | 16 +++++++++------- MD5 | 34 ++++++++++++++++++++-------------- NAMESPACE | 2 ++ NEWS.md |only R/bc.helper.functions.R | 10 ++++------ R/bc.mean.sd.R | 6 +++++- R/plot.qe.fit.R |only R/print.bc.mean.sd.R | 2 +- R/print.qe.mean.sd.R | 2 +- R/qe.fit.R | 22 ++++++++++++++-------- R/qe.helper.functions.R | 32 +++++++++++++++++++++++++++++++- R/qe.mean.sd.R | 8 ++++++++ R/summary.qe.mean.sd.R |only README.md |only man/bc.mean.sd.Rd | 4 +++- man/plot.qe.fit.Rd |only man/print.bc.mean.sd.Rd | 2 +- man/print.qe.mean.sd.Rd | 2 +- man/qe.fit.Rd | 12 +++++++----- man/qe.mean.sd.Rd | 4 ++++ man/summary.qe.mean.sd.Rd |only 21 files changed, 111 insertions(+), 47 deletions(-)