Sat, 30 Mar 2019

Package unpivotr updated to version 0.5.1 with previous version 0.5.0 dated 2019-01-02

Title: Unpivot Complex and Irregular Data Layouts
Description: Tools for converting data from complex or irregular layouts to a columnar structure. For example, tables with multilevel column or row headers, or spreadsheets. Header and data cells are selected by their contents and position, as well as formatting and comments where available, and are associated with one other by their proximity in given directions. Functions for data frames and HTML tables are provided.
Author: Duncan Garmonsway [aut, cre]
Maintainer: Duncan Garmonsway <nacnudus@gmail.com>

Diff between unpivotr versions 0.5.0 dated 2019-01-02 and 0.5.1 dated 2019-03-30

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Package WeMix updated to version 3.0.0 with previous version 2.2.1 dated 2019-03-14

Title: Weighted Mixed-Effects Models Using Multilevel Pseudo Maximum Likelihood Estimation
Description: Run mixed-effects models that include weights at every level. The WeMix package fits a weighted mixed model, also known as a multilevel, mixed, or hierarchical linear model (HLM). The weights could be inverse selection probabilities, such as those developed for an education survey where schools are sampled probabilistically, and then students inside of those schools are sampled probabilistically. Although mixed-effects models are already available in R, WeMix is unique in implementing methods for mixed models using weights at multiple levels. Both linear and logit models are supported. Models may have up to three levels.
Author: Paul Bailey, Claire Kelley, Trang Nguyen, Huade Huo.
Maintainer: Claire Kelley <ckelley@air.org>

Diff between WeMix versions 2.2.1 dated 2019-03-14 and 3.0.0 dated 2019-03-30

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Package smcfcs updated to version 1.4.0 with previous version 1.3.1 dated 2018-10-10

Title: Multiple Imputation of Covariates by Substantive Model Compatible Fully Conditional Specification
Description: Implements multiple imputation of missing covariates by Substantive Model Compatible Fully Conditional Specification. This is a modification of the popular FCS/chained equations multiple imputation approach, and allows imputation of missing covariate values from models which are compatible with the user specified substantive model.
Author: Jonathan Bartlett [aut, cre], Ruth Keogh [aut]
Maintainer: Jonathan Bartlett <j.w.bartlett@bath.ac.uk>

Diff between smcfcs versions 1.3.1 dated 2018-10-10 and 1.4.0 dated 2019-03-30

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Package DataPackageR updated to version 0.15.7 with previous version 0.15.6 dated 2019-03-13

Title: Construct Reproducible Analytic Data Sets as R Packages
Description: A framework to help construct R data packages in a reproducible manner. Potentially time consuming processing of raw data sets into analysis ready data sets is done in a reproducible manner and decoupled from the usual R CMD build process so that data sets can be processed into R objects in the data package and the data package can then be shared, built, and installed by others without the need to repeat computationally costly data processing. The package maintains data provenance by turning the data processing scripts into package vignettes, as well as enforcing documentation and version checking of included data objects. Data packages can be version controlled in github, and used to share data for manuscripts, collaboration and general reproducibility.
Author: Greg Finak [aut, cre, cph], Paul Obrecht [ctb], Ellis Hughes [ctb], Kara Woo [rev] (Kara reviewed the package for ropensci, see <https://github.com/ropensci/onboarding/issues/230>), William Landau [rev] (William reviewed the package for ropensci, see <https://github.com/ropensci/onboarding/issues/230>)
Maintainer: Greg Finak <gfinak@fredhutch.org>

Diff between DataPackageR versions 0.15.6 dated 2019-03-13 and 0.15.7 dated 2019-03-30

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Package aire.zmvm updated to version 0.8.2 with previous version 0.8.1 dated 2019-02-06

Title: Download Mexico City Pollution, Wind, and Temperature Data
Description: Tools for downloading hourly averages, daily maximums and minimums from each of the pollution, wind, and temperature measuring stations or geographic zones in the Mexico City metro area. The package also includes the locations of each of the stations and zones. See <http://aire.cdmx.gob.mx/> for more information.
Author: Diego Valle-Jones [aut, cre]
Maintainer: Diego Valle-Jones <diego@diegovalle.net>

Diff between aire.zmvm versions 0.8.1 dated 2019-02-06 and 0.8.2 dated 2019-03-30

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Package survival updated to version 2.44-1 with previous version 2.43-3 dated 2018-11-26

Title: Survival Analysis
Description: Contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models.
Author: Terry M Therneau [aut, cre], Thomas Lumley [ctb, trl] (original S->R port and R maintainer until 2009)
Maintainer: Terry M Therneau <therneau.terry@mayo.edu>

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Package REddyProc updated to version 1.2 with previous version 1.1.5 dated 2018-05-17

Title: Post Processing of (Half-)Hourly Eddy-Covariance Measurements
Description: Standard and extensible Eddy-Covariance data post-processing (Wutzler et al. (2018) <doi:10.5194/bg-15-5015-2018>) includes uStar-filtering, gap-filling, and flux-partitioning. The Eddy-Covariance (EC) micrometeorological technique quantifies continuous exchange fluxes of gases, energy, and momentum between an ecosystem and the atmosphere. It is important for understanding ecosystem dynamics and upscaling exchange fluxes. (Aubinet et al. (2012) <doi:10.1007/978-94-007-2351-1>). This package inputs pre-processed (half-)hourly data and supports further processing. First, a quality-check and filtering is performed based on the relationship between measured flux and friction velocity (uStar) to discard biased data (Papale et al. (2006) <doi:10.5194/bg-3-571-2006>). Second, gaps in the data are filled based on information from environmental conditions (Reichstein et al. (2005) <doi:10.1111/j.1365-2486.2005.001002.x>). Third, the net flux of carbon dioxide is partitioned into its gross fluxes in and out of the ecosystem by night-time based and day-time based approaches (Lasslop et al. (2010) <doi:10.1111/j.1365-2486.2009.02041.x>).
Author: Department for Biogeochemical Integration at MPI-BGC, Jena, Germany [cph], Thomas Wutzler [aut, cre], Markus Reichstein [aut], Antje Maria Moffat [aut, trl], Olaf Menzer [ctb], Mirco Migliavacca [aut], Kerstin Sickel [ctb, trl], Ladislav Šigut [ctb]
Maintainer: Thomas Wutzler <twutz@bgc-jena.mpg.de>

Diff between REddyProc versions 1.1.5 dated 2018-05-17 and 1.2 dated 2019-03-30

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Package parsec updated to version 1.2.2 with previous version 1.2.1 dated 2018-11-02

Title: Partial Orders in Socio-Economics
Description: Implements tools for the analysis of partially ordered data, with a particular focus on the evaluation of multidimensional systems of indicators and on the analysis of poverty. References, Fattore M. (2016) <doi:10.1007/s11205-015-1059-6> Fattore M., Arcagni A. (2016) <doi:10.1007/s11205-016-1501-4> Arcagni A. (2017) <doi:10.1007/978-3-319-45421-4_19>.
Author: Alberto Arcagni [aut, cre], Marco Fattore [aut]
Maintainer: Alberto Arcagni <alberto.arcagni@unimib.it>

Diff between parsec versions 1.2.1 dated 2018-11-02 and 1.2.2 dated 2019-03-30

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New package clustringr with initial version 1.0
Package: clustringr
Type: Package
Title: Cluster Strings by Edit-Distance
Version: 1.0
Author: Dan S. Reznik
Maintainer: Dan S. Reznik <dreznik@gmail.com>
Description: Returns an edit-distance based clusterization of an input vector of strings. Each cluster will contain a set of strings w/ small mutual edit-distance (e.g., Levenshtein, optimum-sequence-alignment, Damerau-Levenshtein), as computed by stringdist::stringdist(). The set of all mutual edit-distances is then used by graph algorithms (from package 'igraph') to single out subsets of high connectivity.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports: magrittr, dplyr, stringi, stringr, stringdist, igraph, assertthat, forcats, rlang, tidygraph, ggraph, ggplot2
Depends: R (>= 3.1)
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2019-03-26 18:10:58 UTC; dreznik
Repository: CRAN
Date/Publication: 2019-03-30 16:10:03 UTC

More information about clustringr at CRAN
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Package cdata updated to version 1.0.8 with previous version 1.0.7 dated 2019-03-23

Title: Fluid Data Transformations
Description: Supplies higher-order coordinatized data specification and fluid transform operators that include pivot and anti-pivot as special cases. The methodology is describe in 'Zumel', 2018, "Fluid data reshaping with 'cdata'", <http://winvector.github.io/FluidData/FluidDataReshapingWithCdata.html> , doi:10.5281/zenodo.1173299 . This package introduces the idea of control table specification of data transforms (later also adapted from 'cdata' by 'tidyr'). Works on in-memory data or on remote data using 'rquery' and 'SQL' database interfaces.
Author: John Mount [aut, cre], Nina Zumel [aut], Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>

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Package seewave updated to version 2.1.3 with previous version 2.1.0 dated 2018-03-02

Title: Sound Analysis and Synthesis
Description: Functions for analysing, manipulating, displaying, editing and synthesizing time waves (particularly sound). This package processes time analysis (oscillograms and envelopes), spectral content, resonance quality factor, entropy, cross correlation and autocorrelation, zero-crossing, dominant frequency, analytic signal, frequency coherence, 2D and 3D spectrograms and many other analyses.
Author: Jerome Sueur <sueur@mnhn.fr> [cre, au], Thierry Aubin [au], Caroline Simonis [au], Laurent Lellouch [main ctrb], Ethan C. Brown [ctrb], Marion Depraetere [ctrb], Camille Desjonqueres [ctrb], Francois Fabianek [ctrb], Amandine Gasc [ctrb], Eric Kasten [ctrb], Stefanie LaZerte [ctrb], Jonathan Lees [ctrb], Jean Marchal [ctrb], Andre Mikulec [ctrb], Sandrine Pavoine [ctrb], David Pinaud [ctrb], Alicia Stotz [ctrb], Luis J. Villanueva-Rivera [ctrb], Zev Ross [ctrb], Carl G. Witthoft [ctrb], Hristo Zhivomirov [ctrb].
Maintainer: Jerome Sueur <sueur@mnhn.fr>

Diff between seewave versions 2.1.0 dated 2018-03-02 and 2.1.3 dated 2019-03-30

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New package NDP with initial version 0.1.0
Package: NDP
Type: Package
Title: Interactive Presentation for Working with Normal Distribution
Version: 0.1.0
Author: Kartikeya Bolar
Maintainer: Kartikeya Bolar <kartikeya.bolar@tapmi.edu.in>
Description: An interactive presentation on the topic of normal distribution using 'rmarkdown' and 'shiny' packages. It is helpful to those who want to learn normal distribution quickly and get a hands on experience. The presentation has a template for solving problems on normal distribution. Runtime examples are provided in the package function as well as at <https://kartikeyastat.shinyapps.io/NormalDistribution/>.
License: GPL-2
Encoding: UTF-8
LazyData: TRUE
Depends: R (>= 3.0.3)
Imports: shiny,rmarkdown
RoxygenNote: 6.1.0
NeedsCompilation: no
Packaged: 2019-03-26 03:30:02 UTC; KARTIKEYA
Repository: CRAN
Date/Publication: 2019-03-30 15:00:02 UTC

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Package ANN2 updated to version 2.3.1 with previous version 2.3 dated 2019-03-20

Title: Artificial Neural Networks for Anomaly Detection
Description: Training of neural networks for classification and regression tasks using mini-batch gradient descent. Special features include a function for training autoencoders, which can be used to detect anomalies, and some related plotting functions. Multiple activation functions are supported, including tanh, relu, step and ramp. For the use of the step and ramp activation functions in detecting anomalies using autoencoders, see Hawkins et al. (2002) <doi:10.1007/3-540-46145-0_17>. Furthermore, several loss functions are supported, including robust ones such as Huber and pseudo-Huber loss, as well as L1 and L2 regularization. The possible options for optimization algorithms are RMSprop, Adam and SGD with momentum. The package contains a vectorized C++ implementation that facilitates fast training through mini-batch learning.
Author: Bart Lammers
Maintainer: Bart Lammers <bart.f.lammers@gmail.com>

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New package adeptdata with initial version 1.0.1
Package: adeptdata
Type: Package
Title: Accelerometry Data Sets
Version: 1.0.1
Authors@R: c( person("Marta", "Karas", email = "marta.karass@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-5889-3970")), person("Jacek", "Urbanek", role = c("aut"), comment = c(ORCID = "0000-0002-1890-8899")), person("Jaroslaw", "Harezlak", role = c("aut"), comment = c(ORCID = "0000-0002-3070-7686")), person("William", "Fadel", role = c("aut"), comment = c(ORCID = "0000-0002-0292-6734")) )
Description: Created to host raw accelerometry data sets and their derivatives which are used in the corresponding 'adept' package.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Depends: R (>= 2.10)
Suggests: spelling
Language: en-US
NeedsCompilation: no
Packaged: 2019-03-25 16:29:12 UTC; martakaras
Author: Marta Karas [aut, cre] (<https://orcid.org/0000-0001-5889-3970>), Jacek Urbanek [aut] (<https://orcid.org/0000-0002-1890-8899>), Jaroslaw Harezlak [aut] (<https://orcid.org/0000-0002-3070-7686>), William Fadel [aut] (<https://orcid.org/0000-0002-0292-6734>)
Maintainer: Marta Karas <marta.karass@gmail.com>
Repository: CRAN
Date/Publication: 2019-03-30 12:50:03 UTC

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Package rPraat updated to version 1.2.0-1 with previous version 1.2.0 dated 2018-12-08

Title: Interface to Praat
Description: Read, write and manipulate 'Praat' TextGrid, PitchTier, Pitch, IntensityTier, Formant, and Collection files <http://www.fon.hum.uva.nl/praat/>.
Author: Tomas Boril [aut, cre]
Maintainer: Tomas Boril <borilt@gmail.com>

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Package DSAIDE updated to version 0.8.0 with previous version 0.7.0 dated 2018-08-06

Title: Dynamical Systems Approach to Infectious Disease Epidemiology
Description: A collection of 'shiny' apps that allow for the simulation and exploration of various infectious disease transmission dynamics scenarios. The purpose of the package is to help individuals learn about infectious disease epidemiology from a dynamical systems perspective. All apps include explanations of the underlying models and instructions on what to do with the models.
Author: Andreas Handel [aut, cre] (<https://orcid.org/0000-0002-4622-1146>), Isaac Chun-Hai Fung [ctb], Spencer Hall [ctb], Ben Listyg [ctb], Brian McKay [ctb], John Rossow [ctb], Sina Solaimanpour [ctb], Henok Woldu [ctb]
Maintainer: Andreas Handel <ahandel@uga.edu>

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