Title: Mediation Analysis for Complex Surveys
Description: It is a computer tool to conduct mediation analysis for complex surveys using multi-stage sampling. Specifically, the mediation analysis method using balanced repeated replications was proposed by Mai, Ha, and Soulakova (2019) <DOI:10.1080/10705511.2018.1559065>. The development of 'MedSurvey' was sponsored by American Lebanese Syrian Associated Charities (ALSAC). However, the contents of MedSurvey do not necessarily represent the policy of the ALSAC.
Author: Yujiao Mai [aut,cre],
Jiahui Xu [aut],
Deo Kumar Srivastava [aut],
Hui Zhang [aut]
Maintainer: Yujiao Mai <maiyujiao@gmail.com>
Diff between MedSurvey versions 1.0 dated 2019-03-13 and 1.1.0 dated 2019-04-02
DESCRIPTION | 6 +- MD5 | 18 +++---- R/MedSurvey.R | 127 ++++++++++++++++++++++++++++------------------------ R/data.R | 2 data/sysdata.rda |binary man/MedData.Rd | 2 man/chisq.BRR.Rd | 48 ++----------------- man/med.fit.BRR.Rd | 6 +- man/med.p.adjust.Rd | 2 man/med.summary.Rd | 4 - 10 files changed, 95 insertions(+), 120 deletions(-)
Title: Command Line Option Parser
Description: A command line parser inspired by Python's 'optparse' library to
be used with Rscript to write "#!" shebang scripts that accept short and
long flag/options.
Author: Trevor L Davis [aut, cre],
Allen Day [ctb] (Some documentation and examples ported from the getopt
package.),
Python Software Foundation [ctb] (Some documentation from the optparse
Python module.),
Steve Lianoglou [ctb],
Jim Nikelski [ctb],
Kirill Müller [ctb],
Peter Humburg [ctb],
Rich FitzJohn [ctb],
Gyu Jin Choi [ctb]
Maintainer: Trevor L Davis <trevor.l.davis@gmail.com>
Diff between optparse versions 1.6.1 dated 2019-01-15 and 1.6.2 dated 2019-04-02
DESCRIPTION | 8 - MD5 | 18 +-- NEWS.md | 6 + R/optparse.R | 25 +++-- README.md | 197 +++++++++++++++++++++++------------------ inst/COPYRIGHTS | 8 - inst/doc/optparse.html | 38 +++---- man/OptionParser.Rd | 3 man/add_make_option.Rd | 6 - tests/testthat/test-optparse.R | 7 + 10 files changed, 181 insertions(+), 135 deletions(-)
Title: Crunch.io Data Tools
Description: The Crunch.io service <http://crunch.io/> provides a cloud-based
data store and analytic engine, as well as an intuitive web interface.
Using this package, analysts can interact with and manipulate Crunch
datasets from within R. Importantly, this allows technical researchers to
collaborate naturally with team members, managers, and clients who prefer a
point-and-click interface.
Author: Neal Richardson [aut],
Jonathan Keane [aut, cre],
Gordon Shotwell [aut]
Maintainer: Jonathan Keane <jon.keane@crunch.io>
Diff between crunch versions 1.25.0 dated 2019-01-10 and 1.26.0 dated 2019-04-02
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Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-08-19 0.60
2014-03-27 0.40
2013-11-23 0.32
2013-10-12 0.31
2013-05-09 0.27
2013-04-25 0.26
Title: Bootstrap Functions (Originally by Angelo Canty for S)
Description: Functions and datasets for bootstrapping from the
book "Bootstrap Methods and Their Application" by A. C. Davison and
D. V. Hinkley (1997, CUP), originally written by Angelo Canty for S.
Author: Angelo Canty [aut],
Brian Ripley [aut, trl, cre] (author of parallel support)
Maintainer: Brian Ripley <ripley@stats.ox.ac.uk>
Diff between boot versions 1.3-21 dated 2019-03-01 and 1.3-22 dated 2019-04-02
ChangeLog | 4 ++++ DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- inst/po/de/LC_MESSAGES/R-boot.mo |binary po/R-boot.pot | 4 ++-- po/R-de.po | 12 ++++-------- 6 files changed, 19 insertions(+), 19 deletions(-)
Title: Bayesian Analysis of Contingency Tables
Description: Bayesian analysis of complete and incomplete contingency tables.
Author: Antony M. Overstall
Maintainer: Antony M. Overstall <A.M.Overstall@soton.ac.uk>
Diff between conting versions 1.6.1 dated 2018-01-17 and 1.7 dated 2019-04-02
DESCRIPTION | 8 - MD5 | 14 +- R/conting-internal.R | 250 +++++++++++++++++++++++++-------------------------- R/sub_model.R | 2 data/AOH.rda |binary data/ScotPWID.rda |binary data/heart.rda |binary data/spina.rda |binary 8 files changed, 137 insertions(+), 137 deletions(-)
Title: The Hyperdirichlet Distribution, Mark 2
Description: A suite of routines for the hyperdirichlet distribution; supersedes the 'hyperdirichlet' package for most purposes.
Author: Robin K. S. Hankin [aut, cre] (<https://orcid.org/0000-0001-5982-0415>)
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between hyper2 versions 1.0-4 dated 2018-08-01 and 1.0-6 dated 2019-04-02
hyper2-1.0-4/hyper2/inst/oneill.R |only hyper2-1.0-6/hyper2/DESCRIPTION | 16 +- hyper2-1.0-6/hyper2/MD5 | 105 +++++++++++++------ hyper2-1.0-6/hyper2/NAMESPACE | 2 hyper2-1.0-6/hyper2/R/hyper2.R | 60 +++++++++- hyper2-1.0-6/hyper2/R/integration.R |only hyper2-1.0-6/hyper2/R/keep.R |only hyper2-1.0-6/hyper2/build/partial.rdb |only hyper2-1.0-6/hyper2/build/vignette.rds |binary hyper2-1.0-6/hyper2/data/NBA.rda |binary hyper2-1.0-6/hyper2/data/chess.rda |binary hyper2-1.0-6/hyper2/data/counterstrike.rda |binary hyper2-1.0-6/hyper2/data/euro.rda |binary hyper2-1.0-6/hyper2/data/formula1.rda |binary hyper2-1.0-6/hyper2/data/handover.rda |only hyper2-1.0-6/hyper2/data/karpov_kasparov_anand.rda |only hyper2-1.0-6/hyper2/data/masterchef.rda |binary hyper2-1.0-6/hyper2/data/oneill.rda |binary hyper2-1.0-6/hyper2/data/rowing.rda |binary hyper2-1.0-6/hyper2/data/skating.rda |only hyper2-1.0-6/hyper2/data/super_rugby.rda |binary hyper2-1.0-6/hyper2/data/table_tennis.rda |only hyper2-1.0-6/hyper2/data/tennis.rda |binary hyper2-1.0-6/hyper2/data/volleyball.rda |only hyper2-1.0-6/hyper2/inst/F1_allyears.R | 9 - hyper2-1.0-6/hyper2/inst/basketball.R | 4 hyper2-1.0-6/hyper2/inst/collusion_curacao1962.R |only hyper2-1.0-6/hyper2/inst/collusion_stockholm1962.R |only hyper2-1.0-6/hyper2/inst/counterstrike.R | 18 +-- hyper2-1.0-6/hyper2/inst/curacao1962.txt |only hyper2-1.0-6/hyper2/inst/doc/hyper2.R | 24 ++-- hyper2-1.0-6/hyper2/inst/doc/hyper2.Rnw | 33 +++-- hyper2-1.0-6/hyper2/inst/doc/hyper2.pdf |binary hyper2-1.0-6/hyper2/inst/doc/icons.R |only hyper2-1.0-6/hyper2/inst/doc/icons.Rmd |only hyper2-1.0-6/hyper2/inst/doc/icons.html |only hyper2-1.0-6/hyper2/inst/doc/integration.R |only hyper2-1.0-6/hyper2/inst/doc/integration.Rnw |only hyper2-1.0-6/hyper2/inst/doc/integration.pdf |only hyper2-1.0-6/hyper2/inst/doc/skating_analysis.R |only hyper2-1.0-6/hyper2/inst/doc/skating_analysis.Rmd |only hyper2-1.0-6/hyper2/inst/doc/skating_analysis.html |only hyper2-1.0-6/hyper2/inst/doc/table_tennis_serve.R |only hyper2-1.0-6/hyper2/inst/doc/table_tennis_serve.Rmd |only hyper2-1.0-6/hyper2/inst/doc/table_tennis_serve.html |only hyper2-1.0-6/hyper2/inst/eurovision.R | 41 +++---- hyper2-1.0-6/hyper2/inst/formula1.R | 43 +++---- hyper2-1.0-6/hyper2/inst/formula1.png |only hyper2-1.0-6/hyper2/inst/karpov_kasparov_anand.R |only hyper2-1.0-6/hyper2/inst/kka_3draws.R |only hyper2-1.0-6/hyper2/inst/laura_confidence_interval.R | 13 +- hyper2-1.0-6/hyper2/inst/rowing_analysis.R | 19 ++- hyper2-1.0-6/hyper2/inst/skating.txt |only hyper2-1.0-6/hyper2/inst/stockholm1962.txt |only hyper2-1.0-6/hyper2/man/B.Rd |only hyper2-1.0-6/hyper2/man/handover.Rd |only hyper2-1.0-6/hyper2/man/hyper2-package.Rd | 41 ++++--- hyper2-1.0-6/hyper2/man/icons.Rd | 13 +- hyper2-1.0-6/hyper2/man/increment.Rd |only hyper2-1.0-6/hyper2/man/karpov_kasparov_anand.Rd |only hyper2-1.0-6/hyper2/man/length.Rd |only hyper2-1.0-6/hyper2/man/maxp.Rd | 4 hyper2-1.0-6/hyper2/man/rowing.Rd | 2 hyper2-1.0-6/hyper2/man/rrank.Rd | 68 ++++++++++-- hyper2-1.0-6/hyper2/man/saffy.Rd |only hyper2-1.0-6/hyper2/man/skating.Rd |only hyper2-1.0-6/hyper2/man/table_tennis.Rd |only hyper2-1.0-6/hyper2/man/tidy.Rd |only hyper2-1.0-6/hyper2/man/volley.Rd |only hyper2-1.0-6/hyper2/vignettes/hyper2.Rnw | 33 +++-- hyper2-1.0-6/hyper2/vignettes/hyper2.bib | 15 ++ hyper2-1.0-6/hyper2/vignettes/icons.Rmd |only hyper2-1.0-6/hyper2/vignettes/integration.Rnw |only hyper2-1.0-6/hyper2/vignettes/skating_analysis.Rmd |only hyper2-1.0-6/hyper2/vignettes/table_tennis_serve.Rmd |only 75 files changed, 379 insertions(+), 184 deletions(-)
Title: A Grammar of Animated Graphics
Description: The grammar of graphics as implemented in the 'ggplot2' package has
been successful in providing a powerful API for creating static
visualisation. In order to extend the API for animated graphics this package
provides a completely new set of grammar, fully compatible with 'ggplot2'
for specifying transitions and animations in a flexible and extensible way.
Author: Thomas Lin Pedersen [aut, cre]
(<https://orcid.org/0000-0002-5147-4711>),
David Robinson [aut],
RStudio [cph]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between gganimate versions 1.0.2 dated 2019-03-03 and 1.0.3 dated 2019-04-02
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 5 +++++ R/plot-build.R | 2 +- inst/doc/gganimate.html | 26 +++++++++++++------------- 5 files changed, 26 insertions(+), 21 deletions(-)
Title: Geometric Morphometric Analyses of 2D/3D Landmark Data
Description: Read, manipulate, and digitize landmark data, generate shape
variables via Procrustes analysis for points, curves and surfaces, perform
shape analyses, and provide graphical depictions of shapes and patterns of
shape variation.
Author: Dean Adams, Michael Collyer, Antigoni Kaliontzopoulou
Maintainer: Dean Adams <dcadams@iastate.edu>
Diff between geomorph versions 3.1.0 dated 2019-03-24 and 3.1.1 dated 2019-04-02
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++------------ NEWS | 7 +++++++ R/compare.evol.rates.r | 2 +- R/estimate.missing.r | 4 ++-- R/fixed.angle.r | 2 +- R/geomorph.support.code.r | 6 +++--- R/geomorph.utils.r | 2 +- R/picknplot.shape.r | 16 +++++++++------- R/procD.lm.r | 21 +++++++++------------ inst/doc/geomorph.assistance.html | 4 ++-- man/plot.pls.Rd | 2 +- man/procD.lm.Rd | 19 ++++++++----------- 13 files changed, 61 insertions(+), 58 deletions(-)
Title: Method Functions for Confidence Intervals and to Distill
Information from an Object
Description: Some very simple method functions for confidence interval calculation, bootstrap resampling, and to distill pertinent information from a potentially complex object; primarily used in common with packages extRemes and SpatialVx.
Author: Eric Gilleland
Maintainer: Eric Gilleland <ericg@ucar.edu>
Diff between distillery versions 1.0-4 dated 2017-06-20 and 1.0-6 dated 2019-04-02
DESCRIPTION | 8 +-- MD5 | 23 ++++----- R/booter.R | 111 +++++++++++----------------------------------- R/pbooter.R |only R/tibber.R | 44 +++++++++++++++--- man/booter.Rd | 1 man/ci.booted.Rd | 4 - man/datagrabber.Rd | 2 man/distill.Rd | 2 man/distillery-package.Rd | 2 man/is.formula.Rd | 2 man/pbooter.Rd | 8 ++- man/tibber.Rd | 15 +++--- 13 files changed, 101 insertions(+), 121 deletions(-)
Title: Comfortable Search for R Packages on CRAN Directly from the R
Console'
Description: Search for R packages on CRAN directly from the R console, based on the packages' titles, short and long descriptions, or other fields. Combine multiple keywords with logical operators ('and', 'or'), view detailed information on any package and keep track of the latest package contributions to CRAN.
Author: Joachim Zuckarelli [aut, cre] (<https://orcid.org/0000-0002-9280-3016>)
Maintainer: Joachim Zuckarelli <joachim@zuckarelli.de>
Diff between packagefinder versions 0.0.7 dated 2018-07-05 and 0.1.0 dated 2019-04-02
DESCRIPTION | 15 - MD5 | 19 + NAMESPACE | 5 NEWS.md |only R/packagefinder.r | 510 +++++++++++++++++++++++++++++++++++++++++++++----- README.md |only man/buildIndex.Rd | 8 man/exploreFields.Rd |only man/findPackage.Rd | 23 +- man/go.Rd | 12 - man/lastResults.Rd |only man/packageDetails.Rd |only man/packagefinder.Rd |only man/whatsNew.Rd |only 14 files changed, 515 insertions(+), 77 deletions(-)
Title: Tools to Gather Data from Major League Baseball Advanced Media
Description: Multi-core processing of data from Major League Baseball Advanced Media <http://gd2.mlb.com/components/game/mlb/>. Additional tools to parallel process large data sets and write them to a database.
Author: Kris Eberwein [aut, cre]
Maintainer: Kris Eberwein <eberwein@knights.ucf.edu>
Diff between mlbgameday versions 0.1.4 dated 2019-02-16 and 0.2.0 dated 2019-04-02
DESCRIPTION | 6 +++--- MD5 | 28 ++++++++++++++-------------- NEWS.md | 16 ++++++++++++++++ R/get_payload.R | 3 +++ R/payload_methods.R | 15 +++++---------- R/transform_methods.R | 15 +++++++++++++-- build/vignette.rds |binary data/game_ids.rda |binary data/team_ids.rda |binary data/umpire_ids.rda |binary data/venue_ids.rda |binary inst/doc/data_automation.html | 14 +++++++------- inst/doc/database_connections.html | 16 ++++++++-------- inst/doc/pitch_plotting.html | 22 +++++++++++----------- inst/doc/search_games.html | 4 ++-- 15 files changed, 82 insertions(+), 57 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-19 1.3-7
2018-11-15 1.3-6
2018-11-14 1.3-5
2018-10-17 1.3-4
2018-02-02 1.3-3
2018-01-25 1.3-2
2017-12-21 1.3-1
2017-08-21 1.2-3
2017-07-12 1.2-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-30 0.1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-06 0.9-1
Title: Wrap R Tools for Debugging and Parametric Programming
Description: Tools for writing and debugging R code. Provides:
'let()'
(converts non-standard evaluation interfaces to parametric standard
evaluation interfaces, inspired by 'gtools:strmacro()' and 'base::bquote()'),
'%.>%' dot-pipe (an 'S3' configurable pipe),
'build_frame()'/'draw_frame()' ('data.frame' example tools),
'qc()' (quoting concatenate),
':=' (named map builder),
and more.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between wrapr versions 1.8.5 dated 2019-03-24 and 1.8.6 dated 2019-04-02
DESCRIPTION | 8 - MD5 | 46 ++++----- NAMESPACE | 1 NEWS.md | 6 + R/cf.R | 152 +++++++++++++++++++++++++++++-- R/compare_frames.R | 17 ++- inst/doc/CornerCases.html | 4 inst/doc/DebugFnW.html | 6 - inst/doc/FrameTools.html | 24 ++-- inst/doc/Function_Objects.html | 4 inst/doc/Named_Arguments.html | 4 inst/doc/QuotingConcatinate.html | 4 inst/doc/SubstitutionModes.html | 4 inst/doc/bquote.R | 14 ++ inst/doc/bquote.Rmd | 22 ++++ inst/doc/bquote.html | 22 +++- inst/doc/dot_pipe.html | 4 inst/doc/lambda.html | 4 inst/doc/let.html | 4 inst/doc/named_map_builder.html | 4 inst/doc/wrapr_applicable.html | 4 inst/unit_tests/test_build_frame_dates.R |only man/draw_frame.Rd | 4 man/draw_framec.Rd |only vignettes/bquote.Rmd | 22 ++++ 25 files changed, 300 insertions(+), 84 deletions(-)
Title: Linear Model Evaluation with Randomized Residuals in a
Permutation Procedure
Description: Linear model calculations are made for many random versions of data.
Using residual randomization in a permutation procedure, sums of squares are
calculated over many permutations to generate empirical probability distributions
for evaluating model effects. This packaged is described by
Collyer & Adams (2018) <doi:10.1111/2041-210X.13029>. Additionally, coefficients, statistics, fitted values, and residuals generated over many
permutations can be used for various procedures including pairwise tests, prediction, classification, and
model comparison. This package should provide most tools one could need for the analysis of
high-dimensional data, especially in ecology and evolutionary biology, but certainly other fields, as well.
Author: Michael Collyer, Dean Adams
Maintainer: Michael Collyer <mlcollyer@gmail.com>
Diff between RRPP versions 0.4.0 dated 2019-03-24 and 0.4.1 dated 2019-04-02
DESCRIPTION | 12 ++++----- MD5 | 12 ++++----- NEWS | 55 +++++++++++++++++++++++++++++++----------- R/RRPP.support.code.r | 4 +-- R/RRPP.utils.r | 10 ++++++- inst/doc/ANOVA.vs.MANOVA.html | 4 +-- inst/doc/Using.RRPP.html | 4 +-- 7 files changed, 67 insertions(+), 34 deletions(-)
Title: Organising Projects
Description: A system to help you organize projects. Most analyses have three (or more) main sections: code, results, and data, each with different requirements (version control/sharing/encryption). You provide folder locations and 'org' helps you take care of the details.
Author: Richard White [aut, cre]
Maintainer: Richard White <w@rwhite.no>
Diff between org versions 2019.2.21 dated 2019-03-06 and 2019.4.2 dated 2019-04-02
DESCRIPTION | 9 +-- MD5 | 16 +++--- NEWS.md | 10 +++- R/initialise.R | 79 +++++++++++++++++++++++++------- R/onAttach.R | 2 build/vignette.rds |binary inst/doc/intro.html | 9 ++- man/InitialiseProject.Rd | 7 ++ tests/testthat/test_InitialiseProject.R | 45 +++++++++++++++++- 9 files changed, 139 insertions(+), 38 deletions(-)
Title: Group Sequential Designs with Negative Binomial Outcomes
Description: Design and analysis of group sequential designs for negative
binomial outcomes, as described by T Mütze, E Glimm, H Schmidli, T Friede (2018) <doi:10.1177/0962280218773115>.
Author: Tobias Mütze [aut, cre] (<https://orcid.org/0000-0002-4111-1941>)
Maintainer: Tobias Mütze <tobias.muetze@outlook.com>
Diff between gscounts versions 0.1-1 dated 2018-04-13 and 0.1-3 dated 2019-04-02
gscounts-0.1-1/gscounts/tests/testthat/test_bindingfut.R |only gscounts-0.1-1/gscounts/tests/testthat/test_efficacy.R |only gscounts-0.1-1/gscounts/tests/testthat/test_nonbindingfut.R |only gscounts-0.1-3/gscounts/DESCRIPTION | 22 - gscounts-0.1-3/gscounts/MD5 | 46 +- gscounts-0.1-3/gscounts/NEWS.md | 20 - gscounts-0.1-3/gscounts/R/design.R | 189 ++++++---- gscounts-0.1-3/gscounts/R/design_nb.R | 13 gscounts-0.1-3/gscounts/R/information.R | 2 gscounts-0.1-3/gscounts/R/spending_functions.R | 1 gscounts-0.1-3/gscounts/R/support_functions.R | 33 + gscounts-0.1-3/gscounts/README.md | 6 gscounts-0.1-3/gscounts/build/vignette.rds |binary gscounts-0.1-3/gscounts/inst/CITATION |only gscounts-0.1-3/gscounts/inst/doc/Introduction_gscounts.Rmd | 8 gscounts-0.1-3/gscounts/inst/doc/Introduction_gscounts.html | 152 +++++--- gscounts-0.1-3/gscounts/man/design_gsnb.Rd | 61 ++- gscounts-0.1-3/gscounts/man/design_nb.Rd | 7 gscounts-0.1-3/gscounts/man/get_calendartime_gsnb.Rd | 4 gscounts-0.1-3/gscounts/man/get_recruittimes.Rd |only gscounts-0.1-3/gscounts/man/samplesize_from_periods.Rd | 4 gscounts-0.1-3/gscounts/src/cpp_functions.cpp | 4 gscounts-0.1-3/gscounts/tests/testthat/test_gs-bindingfut.R |only gscounts-0.1-3/gscounts/tests/testthat/test_gs-efficacy.R |only gscounts-0.1-3/gscounts/tests/testthat/test_gs-fixedfollowup.R |only gscounts-0.1-3/gscounts/tests/testthat/test_gs-nonbindingfut.R |only gscounts-0.1-3/gscounts/tests/testthat/test_gs-timing.R |only gscounts-0.1-3/gscounts/tests/testthat/test_recruittimes.R |only gscounts-0.1-3/gscounts/tests/testthat/test_supportfunctions.R |only gscounts-0.1-3/gscounts/vignettes/Introduction_gscounts.Rmd | 8 30 files changed, 412 insertions(+), 168 deletions(-)
Title: Get Data for Brazilian Bonds (Tesouro Direto)
Description: Downloads and aggregates data for Brazilian government issued bonds directly from the website of Tesouro Direto <http://www.tesouro.fazenda.gov.br/tesouro-direto-balanco-e-estatisticas>.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Diff between GetTDData versions 1.3.1 dated 2018-02-05 and 1.4 dated 2019-04-02
DESCRIPTION | 10 +++---- MD5 | 14 +++++----- NEWS.md | 22 +++++++++------ R/gtdd_read_TD_files.R | 31 +++++++++++++++++----- build/vignette.rds |binary inst/doc/gtdd-vignette_GetTDData.html | 41 +++++++++++++++++++++++------ inst/doc/gtdd-vignette_YieldCurve.html | 46 +++++++++++++++++++++++++-------- man/read.TD.files.Rd | 6 ++-- 8 files changed, 122 insertions(+), 48 deletions(-)
Title: Utilities for Graphical Rendering
Description: Useful tools for writing vector graphics devices.
Author: David Gohel [aut, cre],
Hadley Wickham [aut],
Lionel Henry [aut],
Jeroen Ooms [aut] (<https://orcid.org/0000-0002-4035-0289>),
Yixuan Qiu [ctb],
R Core Team [cph] (Cairo code from X11 device),
RStudio [cph]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between gdtools versions 0.1.7 dated 2018-02-27 and 0.1.8 dated 2019-04-02
DESCRIPTION | 13 +++++----- MD5 | 25 ++++++++++--------- NAMESPACE | 1 NEWS | 4 +++ R/RcppExports.R | 4 +++ R/fontconfig.R | 9 +++++++ configure | 5 ++- inst/include/gdtools_RcppExports.h | 18 ++++++++++++++ man/fontconfig_reinit.Rd |only man/match_family.Rd | 6 +++- src/Makevars.win | 12 +++++++-- src/RcppExports.cpp | 47 +++++++++++++++++++++++++++++++++++++ src/sys_fonts.cpp | 5 +++ tools/winlibs.R | 6 ++-- 14 files changed, 127 insertions(+), 28 deletions(-)
Title: Functions for Tabular Reporting
Description: Create pretty tables for 'HTML', 'Microsoft Word' and 'Microsoft PowerPoint' documents.
Functions are provided to let users create tables, modify and format their content.
It extends package 'officer' that does not contain any feature for customized tabular reporting
and can be used within R markdown documents.
Author: David Gohel [aut, cre],
Quentin Fazilleau [ctb],
Maxim Nazarov [ctb] (rmarkdown for docx output),
Titouan Robert [ctb]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between flextable versions 0.5.1 dated 2019-02-07 and 0.5.2 dated 2019-04-02
DESCRIPTION | 19 ++-- MD5 | 125 ++++++++++++++------------ NAMESPACE | 8 + NEWS | 12 ++ R/01_fpstruct.R | 54 +++++++++-- R/05_content.R | 87 +++++++++++++++++- R/borders.R | 42 ++++++++ R/display.R | 3 R/html_str.R | 2 R/merge_flextable.R | 2 R/printers.R | 42 ++++++++ R/proc_freq.R |only R/set_headers.R | 8 + R/styles.R | 64 +++++++++++++ R/tabpart_format.R | 2 build/vignette.rds |binary inst/doc/display.R |only inst/doc/display.Rmd |only inst/doc/display.html |only inst/doc/format.R | 110 ----------------------- inst/doc/format.Rmd | 189 ---------------------------------------- inst/doc/format.html | 166 ++++------------------------------- inst/doc/layout.R | 4 inst/doc/layout.Rmd | 6 - inst/doc/layout.html | 82 +++++++++-------- inst/doc/overview.html | 26 +++-- inst/examples/demo_docx.Rmd | 2 inst/examples/demo_html.Rmd |only inst/examples/demo_pagedown.Rmd |only inst/web_1.0.0/tabwid.css | 3 man/align.Rd | 22 ++++ man/as_chunk.Rd | 3 man/as_image.Rd | 3 man/bg.Rd | 9 + man/bold.Rd | 9 + man/border.Rd | 10 +- man/border_inner.Rd |only man/border_inner_h.Rd | 10 +- man/border_inner_v.Rd | 10 +- man/border_outer.Rd | 2 man/border_remove.Rd | 10 +- man/borders.Rd | 10 +- man/color.Rd | 9 + man/display.Rd | 4 man/empty_blanks.Rd | 9 + man/font.Rd | 9 + man/fontsize.Rd | 9 + man/format.flextable.Rd | 6 + man/hline_bottom.Rd | 10 +- man/hline_top.Rd | 10 +- man/htmltools_value.Rd |only man/hyperlink_text.Rd | 3 man/italic.Rd | 9 + man/knit_print.flextable.Rd | 13 +- man/linerange.Rd |only man/merge_at.Rd | 2 man/minibar.Rd | 3 man/padding.Rd | 9 + man/print.flextable.Rd | 7 + man/proc_freq.Rd |only man/rotate.Rd | 9 + man/save_as_html.Rd |only man/style.Rd | 3 man/valign.Rd |only man/vline.Rd | 10 +- man/vline_left.Rd | 10 +- man/vline_right.Rd | 10 +- vignettes/display.Rmd |only vignettes/format.Rmd | 189 ---------------------------------------- vignettes/layout.Rmd | 6 - 70 files changed, 677 insertions(+), 828 deletions(-)
Title: Vehicular Emissions by Top-Down Methods
Description: Creates emissions for use in air quality models. Vehicular emissions
are estimated by a top-down approach, total emissions are calculated using the
statistical description of the fleet of vehicles, the emission is spatially
distributed according to satellite images or openstreetmap data
<https://www.openstreetmap.org> and then distributed temporarily
(Vara-Vela et al., 2016, <doi:10.5194/acp-16-777-2016>).
Author: Daniel Schuch [aut, cre] (<https://orcid.org/0000-0001-5977-4519>),
Sergio Ibarra-Espinosa [aut] (<https://orcid.org/0000-0002-3162-1905>)
Maintainer: Daniel Schuch <schuch@usp.br>
Diff between EmissV versions 0.664.9 dated 2018-09-27 and 0.665.1.0 dated 2019-04-02
EmissV-0.664.9/EmissV/R/perfil.R |only EmissV-0.664.9/EmissV/inst/extdata/dmsp_hi-res.tiff |only EmissV-0.665.1.0/EmissV/DESCRIPTION | 10 EmissV-0.665.1.0/EmissV/MD5 | 51 +-- EmissV-0.665.1.0/EmissV/NAMESPACE | 1 EmissV-0.665.1.0/EmissV/NEWS.md | 29 + EmissV-0.665.1.0/EmissV/R/emission.R | 13 EmissV-0.665.1.0/EmissV/R/gridinfo.R | 40 +- EmissV-0.665.1.0/EmissV/R/lineSource.R | 140 ++++++--- EmissV-0.665.1.0/EmissV/R/pointSource.R | 6 EmissV-0.665.1.0/EmissV/R/profile.R |only EmissV-0.665.1.0/EmissV/R/rasterSource.R | 9 EmissV-0.665.1.0/EmissV/R/read.R | 231 +++++++++++++-- EmissV-0.665.1.0/EmissV/R/speciation.R |only EmissV-0.665.1.0/EmissV/R/species.R |only EmissV-0.665.1.0/EmissV/R/totalvoc.R | 12 EmissV-0.665.1.0/EmissV/data/perfil.rda |binary EmissV-0.665.1.0/EmissV/data/species.rda |only EmissV-0.665.1.0/EmissV/inst/CITATION | 13 EmissV-0.665.1.0/EmissV/man/emission.Rd | 4 EmissV-0.665.1.0/EmissV/man/gridInfo.Rd | 6 EmissV-0.665.1.0/EmissV/man/lineSource.Rd | 26 + EmissV-0.665.1.0/EmissV/man/perfil.Rd | 77 ++++- EmissV-0.665.1.0/EmissV/man/rasterSource.Rd | 4 EmissV-0.665.1.0/EmissV/man/read.Rd | 43 ++ EmissV-0.665.1.0/EmissV/man/speciation.Rd |only EmissV-0.665.1.0/EmissV/man/species.Rd |only EmissV-0.665.1.0/EmissV/man/totalVOC.Rd | 12 EmissV-0.665.1.0/EmissV/man/vehicles.Rd | 3 EmissV-0.665.1.0/EmissV/tests/testthat/test-gridInfo.R | 2 EmissV-0.665.1.0/EmissV/tests/testthat/test-speciation.R |only 31 files changed, 571 insertions(+), 161 deletions(-)
Title: Bias Reduction in Binomial-Response Generalized Linear Models
Description: Fit generalized linear models with binomial responses using either an adjusted-score approach to bias reduction or maximum penalized likelihood where penalization is by Jeffreys invariant prior. These procedures return estimates with improved frequentist properties (bias, mean squared error) that are always finite even in cases where the maximum likelihood estimates are infinite (data separation). Fitting takes place by fitting generalized linear models on iteratively updated pseudo-data. The interface is essentially the same as 'glm'. More flexibility is provided by the fact that custom pseudo-data representations can be specified and used for model fitting. Functions are provided for the construction of confidence intervals for the reduced-bias estimates.
Author: Ioannis Kosmidis [aut, cre] (<https://orcid.org/0000-0003-1556-0302>)
Maintainer: Ioannis Kosmidis <ioannis.kosmidis@warwick.ac.uk>
Diff between brglm versions 0.6.1 dated 2017-06-29 and 0.6.2 dated 2019-04-02
DESCRIPTION | 17 ++++++++++------- MD5 | 8 ++++---- R/plot.profile.brglm.R | 18 ++++++++---------- inst/CHANGES | 4 ++++ inst/CITATION | 4 ++-- 5 files changed, 28 insertions(+), 23 deletions(-)
Title: Statistical Reporting in Clinical Trials
Description: It enables to create easily formatted statistical tables in 'Microsoft Word' documents in pretty formats according to 'clinical standards'. It can be used also outside the scope of clinical trials, for any statistical reporting in 'Word'. Descriptive tables for quantitative statistics (mean, median, max etc..) and/or qualitative statistics (frequencies and percentages) are available and formatted tables of Least Square Means of Linear Models, Linear Mixed Models and Generalized Linear Mixed Models coming from emmeans() function are also available. The package works with 'officer' and 'flextable' packages to export the outputs into 'Microsoft Word' documents.
Author: Jean-Francois Collin
Maintainer: Jean-Francois Collin <jfcollin@live.fr>
Diff between ClinReport versions 0.9.1.11 dated 2019-03-12 and 0.9.1.12 dated 2019-04-02
DESCRIPTION | 8 +- MD5 | 40 ++++++----- NEWS.md | 14 +++- R/desc.R | 8 +- R/regroup.desc.R | 88 +++++++++++++++++++++----- R/report.doc.R | 24 ++++++- R/report.lsmeans.R | 3 R/report.quali.R | 23 +++++- R/report.quanti.R | 50 +++++++++++--- R/space_vline.R |only R/spacetable.R | 3 inst/TODO | 35 ++++++++-- inst/doc/clinreport_graphics.html | 9 +- inst/doc/clinreport_modify_outputs.html | 17 ++--- inst/doc/clinreport_vignette_get_started.R | 2 inst/doc/clinreport_vignette_get_started.Rmd | 15 ++-- inst/doc/clinreport_vignette_get_started.html | 36 +++++----- inst/test.R | 12 +++ man/desc.Rd | 6 + man/report.quanti.Rd | 3 man/space_vline.Rd |only vignettes/clinreport_vignette_get_started.Rmd | 15 ++-- 22 files changed, 301 insertions(+), 110 deletions(-)
Title: NMF-EM Algorithm
Description: Provides a version of the Expectation-Maximization algorithm for
mix-models, reducing the numbers of parameters to estimate using
Non-negative Matrix Factorization methods.
For more explanations, see pre-print of Carel and Alquier (2017) <arXiv:1709.03346>.
Author: Lena Carel [aut, cre]
Maintainer: Lena Carel <lena.carel@gmail.com>
Diff between nmfem versions 1.0.3 dated 2018-04-24 and 1.0.4 dated 2019-04-02
DESCRIPTION | 10 - MD5 | 46 ++-- NAMESPACE | 34 +-- R/data.R | 352 +++++++++++++++++------------------ R/display_profile.R | 150 +++++++-------- R/nmfem_mult.R | 324 ++++++++++++++++----------------- R/nmfem_mult_modelselection.R | 208 ++++++++++----------- R/utility_functions.R | 312 ++++++++++++++++--------------- build/vignette.rds |binary data/datalist | 2 inst/doc/NMFEM_for_travelers.R | 74 +++---- inst/doc/NMFEM_for_travelers.Rmd | 128 ++++++------- inst/doc/NMFEM_for_travelers.html | 289 ++++++++++++++++------------- man/Q.Rd | 44 ++-- man/display_profile.Rd | 60 +++--- man/lambda_update.Rd | 44 ++-- man/lnfact.Rd | 36 +-- man/loglik_mult.Rd | 74 +++---- man/nmfem_mult.Rd | 116 +++++------ man/nmfem_mult_modelselection.Rd | 60 +++--- man/t_update.Rd | 48 ++-- man/theta_update.Rd | 44 ++-- man/travelers.Rd | 372 +++++++++++++++++++------------------- vignettes/NMFEM_for_travelers.Rmd | 128 ++++++------- 24 files changed, 1493 insertions(+), 1462 deletions(-)
Title: Spatially- and Temporally-Explicit Population Simulator
Description: Software to simulate population dynamics across space and time.
Author: Casey Visintin [aut, cre],
Nick Golding [ctb],
Skipton Woolley [ctb],
John Baumgartner [ctb]
Maintainer: Casey Visintin <casey.visintin@unimelb.edu.au>
Diff between steps versions 0.2.0 dated 2019-03-29 and 0.2.1 dated 2019-04-02
DESCRIPTION | 13 ++++++------- MD5 | 16 ++++++++-------- NAMESPACE | 2 -- NEWS.md | 2 +- R/utils.R | 5 ----- src/rcpp_dispersal_funs_v3.cpp | 22 +++++++++++----------- tests/testthat.R | 1 - tests/testthat/test_simulation_results_class.R | 6 +----- vignettes/egk_vignette.html | 24 ++++++++++++------------ 9 files changed, 39 insertions(+), 52 deletions(-)
Title: Differential Item Functioning in Generalized Partial Credit
Models
Description: Provides a framework to detect Differential Item Functioning (DIF) in Generalized Partial Credit Models (GPCM) and special cases of the GPCM as proposed by Schauberger and Mair (2019) <doi:10.3758/s13428-019-01224-2>. A joint model is set up where DIF is explicitly parametrized and penalized likelihood estimation is used for parameter selection. The big advantage of the method called GPCMlasso is that several variables can be treated simultaneously and that both continuous and categorical variables can be used to detect DIF.
Author: Gunther Schauberger
Maintainer: Gunther Schauberger <gunther.schauberger@tum.de>
Diff between GPCMlasso versions 0.1-3 dated 2019-02-21 and 0.1-4 dated 2019-04-02
DESCRIPTION | 12 ++++++------ MD5 | 26 +++++++++++++------------- R/GPCMlasso-package.R | 2 +- R/GPCMlasso.R | 2 +- R/ctrl_GPCMlasso.R | 2 +- R/person.posterior.R | 2 +- R/plot.GPCMlasso.R | 2 +- R/print.GPCMlasso.R | 2 +- man/GPCMlasso-package.Rd | 2 +- man/GPCMlasso.Rd | 2 +- man/ctrl_GPCMlasso.Rd | 6 +++--- man/plot.GPCMlasso.Rd | 2 +- man/print.GPCMlasso.Rd | 2 +- man/trait.posterior.Rd | 2 +- 14 files changed, 33 insertions(+), 33 deletions(-)
Title: Genetic Data Handling (QC, GRM, LD, PCA) & Linear Mixed Models
Description: Manipulation of genetic data (SNPs). Computation of GRM and dominance matrix, LD, heritability with efficient algorithms for linear mixed model (AIREML). Dandine et al <doi:10.1159/000488519>.
Author: Hervé Perdry [cre, aut, cph],
Claire Dandine-Roulland [aut, cph],
Deepak Bandyopadhyay [cph] (C++ gzstream class),
Lutz Kettner [cph] (C++ gzstream class)
Maintainer: Hervé Perdry <herve.perdry@u-psud.fr>
Diff between gaston versions 1.5.4 dated 2018-07-15 and 1.5.5 dated 2019-04-02
DESCRIPTION | 10 ++-- MD5 | 44 +++++++++++---------- NEWS | 3 + R/bm_files.r | 2 R/bm_grm.r | 2 R/bm_interface.r | 4 - R/bm_ld.r | 2 R/bm_product.r | 6 +- R/gwas.r | 12 ++++- R/snp_match.r | 2 R/snp_rm_duplicates.r | 2 TODO | 13 +++++- build/vignette.rds |binary inst/doc/gaston-faq.R |only inst/doc/gaston-faq.Rnw |only inst/doc/gaston-faq.pdf |only inst/doc/gaston.R | 28 ++++++------- inst/doc/gaston.Rnw | 91 +++++++++++++++++++++++++++----------------- inst/doc/gaston.pdf |binary inst/include/gaston/logit.h | 2 man/association.test.Rd | 2 man/bed.matrix-class.Rd | 3 - src/logit.h | 2 vignettes/gaston-faq.Rnw |only vignettes/gaston.Rnw | 91 +++++++++++++++++++++++++++----------------- 25 files changed, 194 insertions(+), 127 deletions(-)
Title: Do a Git Style Diff of the Rows Between Two Dataframes with
Similar Structure
Description: Compares two dataframes which have the same column
structure to show the rows that have changed. Also gives a git style diff format
to quickly see what has changes in addition to summary statistics.
Author: Alex Joseph [aut, cre]
Maintainer: Alex Joseph <alexsanjoseph@gmail.com>
Diff between compareDF versions 1.7.1 dated 2019-02-11 and 1.7.2 dated 2019-04-02
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 3 +++ R/fnsComparison.R | 14 ++++++++------ README.md | 2 +- man/compare_df.Rd | 4 +++- tests/testthat/test-fnsComparison.R | 12 ++++++++++++ 7 files changed, 37 insertions(+), 18 deletions(-)
Title: Elimination-by-Aspects Models
Description: Fitting and testing multi-attribute probabilistic choice
models, especially the Bradley-Terry-Luce (BTL) model (Bradley &
Terry, 1952 <doi:10.1093/biomet/39.3-4.324>; Luce, 1959),
elimination-by-aspects (EBA) models (Tversky, 1972 <doi:10.1037/h0032955>),
and preference tree (Pretree) models (Tversky & Sattath, 1979
<doi:10.1037/0033-295X.86.6.542>).
Author: Florian Wickelmaier [aut, cre]
Maintainer: Florian Wickelmaier <wickelmaier@web.de>
Diff between eba versions 1.8-0 dated 2018-09-25 and 1.9-0 dated 2019-04-02
ChangeLog | 9 ++++++ DESCRIPTION | 14 ++++----- MD5 | 70 ++++++++++++++++++++++++----------------------- NAMESPACE | 1 R/EBA_fast.R | 33 +++++++--------------- R/eba.order.R | 6 ++-- build/partial.rdb |binary data/celebrities.rda |binary data/drugrisk.rda |binary data/heaviness.rda |binary data/pork.rda |binary data/schoolsubjects.rda |binary data/soundquality.rda |only data/tartness.rda |binary man/OptiPt.Rd | 20 +++++++------ man/balanced.pcdesign.Rd | 14 +++------ man/boot.Rd | 2 - man/celebrities.Rd | 21 ++++++-------- man/circular.Rd | 8 ++--- man/drugrisk.Rd | 14 ++++----- man/eba.order.Rd | 31 ++++++++++---------- man/group.test.Rd | 45 ++++++++++++++---------------- man/heaviness.Rd | 13 +++++--- man/inclusion.rule.Rd | 2 - man/linear2btl.Rd | 9 ++---- man/logLik.eba.Rd | 8 ++--- man/mbt.Rd | 11 +++---- man/pcX.Rd | 4 -- man/pork.Rd | 16 ++++++---- man/residuals.eba.Rd | 11 ++----- man/schoolsubjects.Rd | 3 +- man/simulate.eba.Rd | 14 ++++----- man/soundquality.Rd |only man/strans.Rd | 25 ++++++++-------- man/tartness.Rd | 4 +- man/thurstone.Rd | 6 +--- man/uscale.Rd | 4 +- 37 files changed, 203 insertions(+), 215 deletions(-)
Title: Classes for Relational Data
Description: Tools to create and modify network objects. The network class can represent a range of relational data types, and supports arbitrary vertex/edge/graph attributes.
Author: Carter T. Butts [aut, cre],
David Hunter [ctb],
Mark Handcock [ctb],
Skye Bender-deMoll [ctb],
Jeffrey Horner [ctb],
Li Wang [ctb]
Maintainer: Carter T. Butts <buttsc@uci.edu>
Diff between network versions 1.14-377 dated 2019-03-06 and 1.15 dated 2019-04-02
ChangeLog | 2 ++ DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/access.R | 4 ++-- inst/doc/networkVignette.pdf |binary man/loading.attributes.Rd | 3 +-- man/network.dyadcount.Rd | 5 +++-- man/network.edgecount.Rd | 5 +++-- man/read.paj.Rd | 4 ++-- src/access.c | 1 + 10 files changed, 27 insertions(+), 23 deletions(-)
Title: Miscellaneous Extensions to 'ggplot2'
Description: Extensions to 'ggplot2' respecting the grammar of graphics
paradigm. Specialization of method ggplot(): accept and convert on the fly
time series data. Geom: "table", "plot" and "grob" add insets to plots
using native data coordinates, while "table_npc", "plot_npc" and "grob_npc"
do the same using "npc" coordinates through new aesthetics "npcx" and "npcy".
Statistics: locate and tag peaks and valleys; count observations in different
quadrants of a plot; select observations based on 2D density; label with the
equation of a polynomial fitted with lm() or other types of models; labels
with P-value, R^2 or adjusted R^2 or information criteria for fitted models;
label with ANOVA table for fitted models; label with summary for fitted
models. Model fit classes for which suitable methods are provided by package
'broom' are supported.
Author: Pedro J. Aphalo [aut, cre] (<https://orcid.org/0000-0003-3385-972X>),
Kamil Slowikowski [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggpmisc versions 0.3.0 dated 2018-07-16 and 0.3.1 dated 2019-04-02
DESCRIPTION | 32 MD5 | 98 +- NAMESPACE | 36 NEWS | 38 R/compute-npc.r |only R/geom-grob.R |only R/geom-label-npc.r |only R/geom-margin-arrow.r |only R/geom-margin-grob.r |only R/geom-margin-point.r |only R/geom-plot.R |only R/geom-table.R | 232 ++++- R/geom-text-npc.r |only R/ggpmisc.R | 9 R/on-attach.R | 4 R/scale-continuous-npc.r |only R/stat-apply.R |only R/stat-dens2d-filter.r | 6 R/stat-dens2d-labels.r | 7 R/stat-fit-broom-tb.R | 148 +-- R/stat-fit-broom.R | 378 ++++----- R/stat-fit-residuals.R | 5 R/stat-fmt-tb.R | 13 R/stat-peaks.R | 7 R/stat-poly-eq.R | 221 ++--- R/stat-quadrant-counts.R | 184 ++-- README.md | 93 +- build/vignette.rds |binary inst/doc/user-guide.R | 358 ++++---- inst/doc/user-guide.Rmd | 643 ++++++++++----- inst/doc/user-guide.html | 1544 ++++++++++++++++++++----------------- inst/extdata |only man/compute_npcx.Rd |only man/figures/README-readme-03-1.png |binary man/figures/README-readme-04-1.png |binary man/figures/README-readme-05-1.png |binary man/figures/README-readme-06-1.png |only man/find_peaks.Rd | 1 man/geom_grob.Rd |only man/geom_plot.Rd |only man/geom_table.Rd | 74 + man/geom_text_npc.Rd |only man/geom_x_margin_arrow.Rd |only man/geom_x_margin_grob.Rd |only man/geom_x_margin_point.Rd |only man/ggplot.Rd | 5 man/ggpmisc-ggproto.Rd | 57 + man/ggpmisc-package.Rd | 27 man/scale_continuous_npc.Rd |only man/stat_apply.Rd |only man/stat_dens2d_filter.Rd | 2 man/stat_fit_deviations.Rd | 4 man/stat_fit_glance.Rd | 60 - man/stat_fit_tb.Rd | 42 - man/stat_fit_tidy.Rd | 32 man/stat_fmt_tb.Rd | 7 man/stat_peaks.Rd | 1 man/stat_poly_eq.Rd | 70 + man/stat_quadrant_counts.Rd | 80 + vignettes/user-guide.Rmd | 643 ++++++++++----- 60 files changed, 3107 insertions(+), 2054 deletions(-)
Title: Spatio-Temporal Under-Five Mortality Methods for Estimation
Description: Provides methods for estimating, projecting, and plotting spatio-temporal
under-five mortality rates, described in Mercer et al. (2015) <doi:10.1214/15-AOAS872>
and Li et al. (2019) <doi:10.1371/journal.pone.0210645>.
Author: Bryan D Martin [cre, aut],
Zehang R Li [aut],
Yuan Hsiao [aut],
Jessica Godwin [aut],
Jon Wakefield [aut],
Samuel J Clark [aut]
Maintainer: Bryan D Martin <bmartin6@uw.edu>
Diff between SUMMER versions 0.2.2 dated 2019-01-20 and 0.2.3 dated 2019-04-02
DESCRIPTION | 9 +-- MD5 | 40 ++++++------- NAMESPACE | 1 R/aggregateSurvey.R | 2 R/countrySummary.R | 87 ++++++++++++++++++++++------- R/countrySummary_mult.R | 23 +++---- R/fitINLA.R | 40 +++++++------ R/getBirths.R | 127 +++++++++++++++++++++++++++---------------- R/mapPlot.R | 49 ++++++++++------ R/plot_projINLA.R | 118 ++++++++++++++++++++++++++++++--------- R/projINLA.R | 6 +- README.md | 2 inst/doc/summer-vignette.pdf |binary man/aggregateSurvey.Rd | 2 man/countrySummary.Rd | 20 +++--- man/countrySummary_mult.Rd | 20 +++--- man/fitINLA.Rd | 10 ++- man/getBirths.Rd | 27 +++++++-- man/mapPlot.Rd | 13 ++++ man/plot.projINLA.Rd | 78 ++++++++++++++++++++------ man/projINLA.Rd | 2 21 files changed, 460 insertions(+), 216 deletions(-)
Title: Automated Cleaning of Occurrence Records from Biological
Collections
Description: Automated flagging of common spatial and temporal errors in biological and paleontological collection data, for the use in conservation, ecology and paleontology. Includes automated tests to easily flag (and exclude) records assigned to country or province centroid, the open ocean, the headquarters of the Global Biodiversity Information Facility, urban areas or the location of biodiversity institutions (museums, zoos, botanical gardens, universities). Furthermore identifies per species outlier coordinates, zero coordinates, identical latitude/longitude and invalid coordinates. Also implements an algorithm to identify data sets with a significant proportion of rounded coordinates. Especially suited for large data sets.
Author: Alexander Zizka [aut, cre],
Daniele Silvestro [ctb],
Tobias Andermann [ctb],
Josue Azevedo [ctb],
Camila Duarte Ritter [ctb],
Daniel Edler [ctb],
Harith Farooq [ctb],
Andrei Herdean [ctb],
Maria Ariza [ctb],
Ruud Scharn [ctb],
Sten Svanteson [ctb],
Niklas Wengstrom [ctb],
Vera Zizka [ctb],
Alexandre Antonelli [ctb],
Irene Steves [rev] (Irene reviewed the package for ropensci, see
<https://github.com/ropensci/onboarding/issues/210>),
Francisco Rodriguez-Sanchez [rev] (Francisco reviewed the package for
ropensci, see <https://github.com/ropensci/onboarding/issues/210>)
Maintainer: Alexander Zizka <alexander.zizka@idiv.de>
Diff between CoordinateCleaner versions 2.0-8 dated 2019-03-21 and 2.0-9 dated 2019-04-02
DESCRIPTION | 6 MD5 | 14 - NEWS.md | 9 + R/cc_outl.R | 198 ++++++++++++++---------- R/internal_clean_coordinate.R | 82 +++++++++ README.md | 4 man/cc_outl.Rd | 8 tests/testthat/test_coordinatelevel_functions.R | 18 +- 8 files changed, 235 insertions(+), 104 deletions(-)
More information about CoordinateCleaner at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-02 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-01 0.1.0
Title: Miscellaneous Functions by 'Yihui Xie'
Description: Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.
Author: Yihui Xie [aut, cre, cph] (<https://orcid.org/0000-0003-0645-5666>),
Daijiang Li [ctb],
Xianying Tan [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between xfun versions 0.5 dated 2019-02-20 and 0.6 dated 2019-04-02
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 10 ++++++++++ R/markdown.R | 5 +++-- R/packages.R | 18 ++++++++++++++++++ R/paths.R | 5 +++-- build/vignette.rds |binary inst/doc/xfun.html | 17 ++++++++++------- man/same_path.Rd | 4 +++- 9 files changed, 58 insertions(+), 23 deletions(-)
Title: Interface to 'Azure Resource Manager'
Description: A lightweight but powerful R interface to the 'Azure Resource Manager' REST API. The package exposes classes and methods for 'OAuth' authentication and working with subscriptions and resource groups. It also provides functionality for creating and deleting 'Azure' resources and deploying templates. While 'AzureRMR' can be used to manage any 'Azure' service, it can also be extended by other packages to provide extra functionality for specific services.
Author: Hong Ooi [aut, cre],
Microsoft [cph]
Maintainer: Hong Ooi <hongooi@microsoft.com>
Diff between AzureRMR versions 2.0.0 dated 2019-02-25 and 2.1.0 dated 2019-04-02
AzureRMR-2.0.0/AzureRMR/R/az_auth.R |only AzureRMR-2.0.0/AzureRMR/inst/CITATION |only AzureRMR-2.0.0/AzureRMR/inst/doc/intro.R |only AzureRMR-2.0.0/AzureRMR/man/is.Rd |only AzureRMR-2.1.0/AzureRMR/DESCRIPTION | 12 AzureRMR-2.1.0/AzureRMR/MD5 | 66 - AzureRMR-2.1.0/AzureRMR/NAMESPACE | 4 AzureRMR-2.1.0/AzureRMR/NEWS.md | 6 AzureRMR-2.1.0/AzureRMR/R/AzureRMR.R | 29 AzureRMR-2.1.0/AzureRMR/R/az_login.R | 16 AzureRMR-2.1.0/AzureRMR/R/az_resgroup.R | 93 - AzureRMR-2.1.0/AzureRMR/R/az_resource.R | 71 - AzureRMR-2.1.0/AzureRMR/R/az_rm.R |only AzureRMR-2.1.0/AzureRMR/R/az_role.R |only AzureRMR-2.1.0/AzureRMR/R/az_subscription.R | 104 -- AzureRMR-2.1.0/AzureRMR/R/az_template.R | 20 AzureRMR-2.1.0/AzureRMR/R/call_azure_rm.R | 34 AzureRMR-2.1.0/AzureRMR/R/is.R | 25 AzureRMR-2.1.0/AzureRMR/R/locks.R |only AzureRMR-2.1.0/AzureRMR/R/rbac.R |only AzureRMR-2.1.0/AzureRMR/R/utils.R | 27 AzureRMR-2.1.0/AzureRMR/README.md | 14 AzureRMR-2.1.0/AzureRMR/build/vignette.rds |binary AzureRMR-2.1.0/AzureRMR/inst/doc/extend.html | 728 +++++++++------ AzureRMR-2.1.0/AzureRMR/inst/doc/intro.Rmd | 123 ++ AzureRMR-2.1.0/AzureRMR/inst/doc/intro.html | 670 +++++++++---- AzureRMR-2.1.0/AzureRMR/man/az_resource.Rd | 17 AzureRMR-2.1.0/AzureRMR/man/az_resource_group.Rd | 17 AzureRMR-2.1.0/AzureRMR/man/az_rm.Rd | 5 AzureRMR-2.1.0/AzureRMR/man/az_role_assignment.Rd |only AzureRMR-2.1.0/AzureRMR/man/az_role_definition.Rd |only AzureRMR-2.1.0/AzureRMR/man/az_subscription.Rd | 19 AzureRMR-2.1.0/AzureRMR/man/call_azure.Rd | 4 AzureRMR-2.1.0/AzureRMR/man/info.Rd |only AzureRMR-2.1.0/AzureRMR/man/lock.Rd |only AzureRMR-2.1.0/AzureRMR/man/rbac.Rd |only AzureRMR-2.1.0/AzureRMR/tests/resources/template.json | 60 - AzureRMR-2.1.0/AzureRMR/tests/testthat/test01_auth.R | 6 AzureRMR-2.1.0/AzureRMR/tests/testthat/test05_template.R | 1 AzureRMR-2.1.0/AzureRMR/tests/testthat/test06_rbac.R |only AzureRMR-2.1.0/AzureRMR/vignettes/intro.Rmd | 123 ++ 41 files changed, 1484 insertions(+), 810 deletions(-)
Title: Atlas of Living Australia (ALA) Data and Resources in R
Description: The Atlas of Living Australia (ALA) provides tools to enable users
of biodiversity information to find, access, combine and visualise data on
Australian plants and animals; these have been made available from
<https://ala.org.au/>. ALA4R provides a subset of the tools to be
directly used within R. It enables the R community to directly access data
and resources hosted by the ALA.
Author: Peggy Newman [aut, cre],
Ben Raymond [aut],
Jeremy VanDerWal [aut],
Lee Belbin [aut],
Michael Sumner [ctb],
Tom August [ctb],
John Baumgartner [ctb]
Maintainer: Peggy Newman <peggy.newman@csiro.au>
Diff between ALA4R versions 1.6.2 dated 2019-02-13 and 1.7.0 dated 2019-04-02
ALA4R-1.6.2/ALA4R/tests/testthat/f94adc3c400e795d5e4d254a35d786f8 |only ALA4R-1.7.0/ALA4R/DESCRIPTION | 17 ALA4R-1.7.0/ALA4R/MD5 | 119 +- ALA4R-1.7.0/ALA4R/NAMESPACE | 1 ALA4R-1.7.0/ALA4R/NEWS.md | 7 ALA4R-1.7.0/ALA4R/R/ALA4R.R | 4 ALA4R-1.7.0/ALA4R/R/ala_cache_filename.R | 4 ALA4R-1.7.0/ALA4R/R/ala_config.R | 428 +++++----- ALA4R-1.7.0/ALA4R/R/ala_fields.R | 329 +++---- ALA4R-1.7.0/ALA4R/R/ala_lists.R | 4 ALA4R-1.7.0/ALA4R/R/cached_get.R | 4 ALA4R-1.7.0/ALA4R/R/cached_post.R | 45 - ALA4R-1.7.0/ALA4R/R/check_assertions.R | 2 ALA4R-1.7.0/ALA4R/R/check_status_code.R | 2 ALA4R-1.7.0/ALA4R/R/download_to_file.R | 22 ALA4R-1.7.0/ALA4R/R/fieldguide.R | 2 ALA4R-1.7.0/ALA4R/R/image_info.R | 4 ALA4R-1.7.0/ALA4R/R/intersect_points.R | 6 ALA4R-1.7.0/ALA4R/R/occurrence_details.R | 2 ALA4R-1.7.0/ALA4R/R/occurrences.R | 14 ALA4R-1.7.0/ALA4R/R/occurrences_plot.R | 2 ALA4R-1.7.0/ALA4R/R/occurrences_s3.R | 2 ALA4R-1.7.0/ALA4R/R/onload.R | 18 ALA4R-1.7.0/ALA4R/R/search_fulltext.R | 2 ALA4R-1.7.0/ALA4R/R/search_guids.R | 2 ALA4R-1.7.0/ALA4R/R/search_layers.R | 4 ALA4R-1.7.0/ALA4R/R/search_names.R | 2 ALA4R-1.7.0/ALA4R/R/search_partial_name.R | 2 ALA4R-1.7.0/ALA4R/R/sites_by_species.R | 204 ++-- ALA4R-1.7.0/ALA4R/R/species_info.R | 2 ALA4R-1.7.0/ALA4R/R/specieslist.R | 2 ALA4R-1.7.0/ALA4R/R/taxinfo_download.R | 4 ALA4R-1.7.0/ALA4R/README.md | 2 ALA4R-1.7.0/ALA4R/inst/doc/ALA4R.R | 2 ALA4R-1.7.0/ALA4R/inst/doc/ALA4R.Rmd | 6 ALA4R-1.7.0/ALA4R/inst/doc/ALA4R.html | 332 +++---- ALA4R-1.7.0/ALA4R/man/ALA4R.Rd | 2 ALA4R-1.7.0/ALA4R/man/ala_cache_filename.Rd | 4 ALA4R-1.7.0/ALA4R/man/ala_config.Rd | 4 ALA4R-1.7.0/ALA4R/man/ala_fields.Rd | 8 ALA4R-1.7.0/ALA4R/man/ala_list.Rd | 2 ALA4R-1.7.0/ALA4R/man/ala_lists.Rd | 5 ALA4R-1.7.0/ALA4R/man/check_assertions.Rd | 2 ALA4R-1.7.0/ALA4R/man/fieldguide.Rd | 2 ALA4R-1.7.0/ALA4R/man/image_info.Rd | 4 ALA4R-1.7.0/ALA4R/man/intersect_points.Rd | 10 ALA4R-1.7.0/ALA4R/man/occurrence_details.Rd | 2 ALA4R-1.7.0/ALA4R/man/occurrences.Rd | 12 ALA4R-1.7.0/ALA4R/man/occurrences_plot.Rd | 2 ALA4R-1.7.0/ALA4R/man/occurrences_s3.Rd | 2 ALA4R-1.7.0/ALA4R/man/search_fulltext.Rd | 2 ALA4R-1.7.0/ALA4R/man/search_guids.Rd | 2 ALA4R-1.7.0/ALA4R/man/search_layers.Rd | 4 ALA4R-1.7.0/ALA4R/man/search_names.Rd | 2 ALA4R-1.7.0/ALA4R/man/search_partial_name.Rd | 2 ALA4R-1.7.0/ALA4R/man/sites_by_species.Rd | 32 ALA4R-1.7.0/ALA4R/man/species_info.Rd | 2 ALA4R-1.7.0/ALA4R/man/specieslist.Rd | 2 ALA4R-1.7.0/ALA4R/man/taxinfo_download.Rd | 4 ALA4R-1.7.0/ALA4R/tests/testthat/test-species.R | 3 ALA4R-1.7.0/ALA4R/vignettes/ALA4R.Rmd | 6 61 files changed, 891 insertions(+), 835 deletions(-)