Title: Clustering for Multivariate and Univariate Data Using
Expectation Maximization Algorithm
Description: Implements the Expectation Maximisation (EM) algorithm for clustering finite gaussian mixture models for
both multivariate and univariate datasets. The initialization is done by randomly selecting the samples from the
dataset as the mean of the Gaussian(s). This version improves the parameter initialization on big datasets.
The algorithm returns a set of Gaussian parameters-posterior probabilities, mean, co-variance matrices
(multivariate data)/standard-deviation (for univariate datasets) and priors.
Reference: Hasan Kurban, Mark Jenne, Mehmet M. Dalkilic (2016) <doi:10.1007/s41060-017-0062-1>.
This work is partially supported by NCI Grant 1R01CA213466-01.
Author: Sharma Parichit [aut, cre, ctb],
Kurban Hasan [aut, ctb],
Jenne Mark [aut, ctb],
Dalkilic Mehmet [aut]
Maintainer: Sharma Parichit <parishar@iu.edu>
Diff between DCEM versions 0.0.1 dated 2018-09-30 and 0.0.2 dated 2019-04-05
DESCRIPTION | 14 ++-- MD5 | 34 +++++----- NEWS.md | 10 +++ R/dcem.R | 22 ++++++ R/dcem_cluster_mv.R | 3 R/dcem_cluster_uv.R | 30 +++++---- R/dcem_init_mv.R | 81 +++++++++++++++++++++++- R/dcem_init_uv.R | 77 ++++++++++++++++++++++- R/dcem_train.R | 167 ++++++++++++++++++++++++++++++++------------------- R/sanitycheck.R | 32 ++++----- README.md | 6 - man/DCEM.Rd | 25 +++++++ man/dcem_train.Rd | 30 +++------ man/means_mv.Rd | 8 +- man/means_mv_impr.Rd |only man/means_uv.Rd | 7 +- man/means_uv_impr.Rd |only man/trim_data.Rd | 13 +++ man/validate_data.Rd | 9 +- 19 files changed, 413 insertions(+), 155 deletions(-)
Title: Group Animal Relocation Data by Spatial and Temporal
Relationship
Description: Detects spatial and temporal groups in GPS relocations.
It can be used to convert GPS relocations to
gambit-of-the-group format to build proximity-based social networks.
In addition, the randomizations function provides data-stream
randomization methods suitable for GPS data.
Author: Alec L. Robitaille [aut, cre] (<https://orcid.org/0000-0002-4706-1762>),
Quinn Webber [aut] (<https://orcid.org/0000-0002-0434-9360>),
Eric Vander Wal [aut] (<https://orcid.org/0000-0002-8534-4317>)
Maintainer: Alec L. Robitaille <robit.alec@gmail.com>
Diff between spatsoc versions 0.1.6 dated 2019-01-10 and 0.1.8 dated 2019-04-05
DESCRIPTION | 8 - MD5 | 35 +++-- NAMESPACE | 2 NEWS.md |only R/edge_dist.R |only R/edge_nn.R |only R/group_times.R | 23 +-- R/spatsoc.R | 7 + build/vignette.rds |binary inst/doc/faq.Rmd | 41 +++++- inst/doc/faq.html | 48 ++++++- inst/doc/intro-spatsoc.R | 42 +++++- inst/doc/intro-spatsoc.Rmd | 66 +++++++--- inst/doc/intro-spatsoc.html | 251 +++++++++++++++++++++++++++------------- man/edge_dist.Rd |only man/edge_nn.Rd |only man/spatsoc.Rd | 7 + tests/testthat/test-edge-dist.R |only tests/testthat/test-edge-nn.R |only tests/testthat/test-time.R | 15 ++ vignettes/faq.Rmd | 41 +++++- vignettes/intro-spatsoc.Rmd | 66 +++++++--- 22 files changed, 481 insertions(+), 171 deletions(-)
Title: Dynamic Panel Models with Orthogonal Reparameterization of Fixed
Effects
Description: Implements the orthogonal reparameterization
approach recommended by Lancaster (2002) to estimate dynamic panel
models with fixed effects (and optionally: panel specific
intercepts). The approach uses a likelihood-based estimator and
produces estimates that are asymptotically unbiased as N goes to
infinity, with a T as low as 2.
Author: Davor Cubranic [aut],
Mark Pickup [aut, cre],
Paul Gustafson [aut],
Geoffrey Evans [aut],
Jonoska Stojkova Biljana [ctb]
Maintainer: Mark Pickup <mark.pickup@sfu.ca>
Diff between OrthoPanels versions 1.1-0 dated 2016-11-10 and 1.1-2 dated 2019-04-05
OrthoPanels-1.1-0/OrthoPanels/inst/doc/opm-experiment.Rmd |only OrthoPanels-1.1-0/OrthoPanels/inst/doc/opm-experiment.html |only OrthoPanels-1.1-0/OrthoPanels/inst/doc/opm-experiment.pdf |only OrthoPanels-1.1-2/OrthoPanels/DESCRIPTION | 25 OrthoPanels-1.1-2/OrthoPanels/MD5 | 42 OrthoPanels-1.1-2/OrthoPanels/NEWS.md | 2 OrthoPanels-1.1-2/OrthoPanels/build/vignette.rds |binary OrthoPanels-1.1-2/OrthoPanels/inst/doc/intro-opm.html | 456 +++- OrthoPanels-1.1-2/OrthoPanels/man/BES_panel.Rd | 1 OrthoPanels-1.1-2/OrthoPanels/man/DIC.Rd | 1 OrthoPanels-1.1-2/OrthoPanels/man/OrthoPanels-package.Rd | 1 OrthoPanels-1.1-2/OrthoPanels/man/abond_panel.Rd | 1 OrthoPanels-1.1-2/OrthoPanels/man/caterplot.Rd | 1 OrthoPanels-1.1-2/OrthoPanels/man/confint.opm.Rd | 1 OrthoPanels-1.1-2/OrthoPanels/man/hist.opm.Rd | 1 OrthoPanels-1.1-2/OrthoPanels/man/opm.Rd | 1 OrthoPanels-1.1-2/OrthoPanels/man/p_rho.Rd | 1 OrthoPanels-1.1-2/OrthoPanels/man/plot.opm.Rd | 1 OrthoPanels-1.1-2/OrthoPanels/man/quantile.opm.Rd | 1 OrthoPanels-1.1-2/OrthoPanels/tests/testthat/helper-generate.R | 5 OrthoPanels-1.1-2/OrthoPanels/tests/testthat/test-dropouts.R | 349 +-- OrthoPanels-1.1-2/OrthoPanels/tests/testthat/test-opm-multivar.R | 710 +++---- OrthoPanels-1.1-2/OrthoPanels/tests/testthat/test-opm.R | 932 +++++----- OrthoPanels-1.1-2/OrthoPanels/tests/testthat/test-orthopanels.R |only 24 files changed, 1405 insertions(+), 1127 deletions(-)
Title: HTTP and WebSocket Server Library
Description: Provides low-level socket and protocol support for handling
HTTP and WebSocket requests directly from within R. It is primarily
intended as a building block for other packages, rather than making it
particularly easy to create complete web applications using httpuv alone.
httpuv is built on top of the libuv and http-parser C libraries, both of
which were developed by Joyent, Inc. (See LICENSE file for libuv and
http-parser license information.)
Author: Joe Cheng, Hector Corrada Bravo [ctb], Jeroen Ooms [ctb],
Winston Chang [ctb]
Maintainer: Joe Cheng <joe@rstudio.com>
Diff between httpuv versions 1.5.0 dated 2019-03-15 and 1.5.1 dated 2019-04-05
httpuv-1.5.0/httpuv/src/libuv/include/uv/pthread-barrier.h |only httpuv-1.5.0/httpuv/src/libuv/src/win/req.c |only httpuv-1.5.1/httpuv/DESCRIPTION | 6 httpuv-1.5.1/httpuv/MD5 | 276 +++---- httpuv-1.5.1/httpuv/NEWS.md | 13 httpuv-1.5.1/httpuv/src/filedatasource.h | 2 httpuv-1.5.1/httpuv/src/http.cpp | 4 httpuv-1.5.1/httpuv/src/http.h | 4 httpuv-1.5.1/httpuv/src/httprequest.cpp | 4 httpuv-1.5.1/httpuv/src/httpuv.cpp | 20 httpuv-1.5.1/httpuv/src/libuv/AUTHORS | 20 httpuv-1.5.1/httpuv/src/libuv/CMakeLists.txt | 21 httpuv-1.5.1/httpuv/src/libuv/ChangeLog | 263 ++++++ httpuv-1.5.1/httpuv/src/libuv/MAINTAINERS.md | 1 httpuv-1.5.1/httpuv/src/libuv/Makefile.am | 59 + httpuv-1.5.1/httpuv/src/libuv/Makefile.in | 385 +++++++-- httpuv-1.5.1/httpuv/src/libuv/README.md | 5 httpuv-1.5.1/httpuv/src/libuv/configure | 210 +++-- httpuv-1.5.1/httpuv/src/libuv/configure.ac | 27 httpuv-1.5.1/httpuv/src/libuv/docs/src/design.rst | 2 httpuv-1.5.1/httpuv/src/libuv/docs/src/fs.rst | 2 httpuv-1.5.1/httpuv/src/libuv/docs/src/handle.rst | 2 httpuv-1.5.1/httpuv/src/libuv/docs/src/loop.rst | 2 httpuv-1.5.1/httpuv/src/libuv/docs/src/misc.rst | 31 httpuv-1.5.1/httpuv/src/libuv/docs/src/process.rst | 18 httpuv-1.5.1/httpuv/src/libuv/docs/src/signal.rst | 24 httpuv-1.5.1/httpuv/src/libuv/docs/src/threading.rst | 29 httpuv-1.5.1/httpuv/src/libuv/docs/src/udp.rst | 54 + httpuv-1.5.1/httpuv/src/libuv/include/uv.h | 59 + httpuv-1.5.1/httpuv/src/libuv/include/uv/unix.h | 33 httpuv-1.5.1/httpuv/src/libuv/include/uv/version.h | 4 httpuv-1.5.1/httpuv/src/libuv/include/uv/win.h | 9 httpuv-1.5.1/httpuv/src/libuv/src/fs-poll.c | 63 + httpuv-1.5.1/httpuv/src/libuv/src/idna.c |only httpuv-1.5.1/httpuv/src/libuv/src/idna.h |only httpuv-1.5.1/httpuv/src/libuv/src/inet.c | 11 httpuv-1.5.1/httpuv/src/libuv/src/strscpy.c |only httpuv-1.5.1/httpuv/src/libuv/src/strscpy.h |only httpuv-1.5.1/httpuv/src/libuv/src/threadpool.c | 18 httpuv-1.5.1/httpuv/src/libuv/src/timer.c | 2 httpuv-1.5.1/httpuv/src/libuv/src/unix/aix-common.c | 9 httpuv-1.5.1/httpuv/src/libuv/src/unix/aix.c | 64 + httpuv-1.5.1/httpuv/src/libuv/src/unix/atomic-ops.h | 4 httpuv-1.5.1/httpuv/src/libuv/src/unix/bsd-ifaddrs.c | 23 httpuv-1.5.1/httpuv/src/libuv/src/unix/bsd-proctitle.c |only httpuv-1.5.1/httpuv/src/libuv/src/unix/core.c | 119 ++- httpuv-1.5.1/httpuv/src/libuv/src/unix/cygwin.c | 2 httpuv-1.5.1/httpuv/src/libuv/src/unix/darwin-proctitle.c | 141 +-- httpuv-1.5.1/httpuv/src/libuv/src/unix/freebsd.c | 79 -- httpuv-1.5.1/httpuv/src/libuv/src/unix/fs.c | 301 +++++-- httpuv-1.5.1/httpuv/src/libuv/src/unix/fsevents.c | 70 - httpuv-1.5.1/httpuv/src/libuv/src/unix/getaddrinfo.c | 22 httpuv-1.5.1/httpuv/src/libuv/src/unix/internal.h | 29 httpuv-1.5.1/httpuv/src/libuv/src/unix/kqueue.c | 81 +- httpuv-1.5.1/httpuv/src/libuv/src/unix/linux-core.c | 21 httpuv-1.5.1/httpuv/src/libuv/src/unix/linux-inotify.c | 6 httpuv-1.5.1/httpuv/src/libuv/src/unix/linux-syscalls.c | 28 httpuv-1.5.1/httpuv/src/libuv/src/unix/linux-syscalls.h | 35 httpuv-1.5.1/httpuv/src/libuv/src/unix/netbsd.c | 71 - httpuv-1.5.1/httpuv/src/libuv/src/unix/openbsd.c | 69 - httpuv-1.5.1/httpuv/src/libuv/src/unix/os390.c | 27 httpuv-1.5.1/httpuv/src/libuv/src/unix/pipe.c | 18 httpuv-1.5.1/httpuv/src/libuv/src/unix/posix-poll.c | 2 httpuv-1.5.1/httpuv/src/libuv/src/unix/proctitle.c | 4 httpuv-1.5.1/httpuv/src/libuv/src/unix/stream.c | 161 +--- httpuv-1.5.1/httpuv/src/libuv/src/unix/sunos.c | 34 httpuv-1.5.1/httpuv/src/libuv/src/unix/tcp.c | 48 - httpuv-1.5.1/httpuv/src/libuv/src/unix/thread.c | 179 ++-- httpuv-1.5.1/httpuv/src/libuv/src/unix/udp.c | 127 ++- httpuv-1.5.1/httpuv/src/libuv/src/uv-common.c | 103 ++ httpuv-1.5.1/httpuv/src/libuv/src/uv-common.h | 10 httpuv-1.5.1/httpuv/src/libuv/src/uv-data-getter-setters.c | 16 httpuv-1.5.1/httpuv/src/libuv/src/win/core.c | 27 httpuv-1.5.1/httpuv/src/libuv/src/win/dl.c | 11 httpuv-1.5.1/httpuv/src/libuv/src/win/fs-event.c | 17 httpuv-1.5.1/httpuv/src/libuv/src/win/fs.c | 53 + httpuv-1.5.1/httpuv/src/libuv/src/win/getaddrinfo.c | 14 httpuv-1.5.1/httpuv/src/libuv/src/win/handle.c | 1 httpuv-1.5.1/httpuv/src/libuv/src/win/internal.h | 8 httpuv-1.5.1/httpuv/src/libuv/src/win/pipe.c | 17 httpuv-1.5.1/httpuv/src/libuv/src/win/poll.c | 4 httpuv-1.5.1/httpuv/src/libuv/src/win/process.c | 15 httpuv-1.5.1/httpuv/src/libuv/src/win/signal.c | 2 httpuv-1.5.1/httpuv/src/libuv/src/win/tcp.c | 44 - httpuv-1.5.1/httpuv/src/libuv/src/win/thread.c | 35 httpuv-1.5.1/httpuv/src/libuv/src/win/tty.c | 32 httpuv-1.5.1/httpuv/src/libuv/src/win/udp.c | 103 ++ httpuv-1.5.1/httpuv/src/libuv/src/win/util.c | 180 ++++ httpuv-1.5.1/httpuv/src/libuv/src/win/winapi.c | 4 httpuv-1.5.1/httpuv/src/libuv/src/win/winapi.h | 7 httpuv-1.5.1/httpuv/src/libuv/src/win/winsock.c | 15 httpuv-1.5.1/httpuv/src/libuv/test/echo-server.c | 4 httpuv-1.5.1/httpuv/src/libuv/test/run-tests.c | 35 httpuv-1.5.1/httpuv/src/libuv/test/runner-unix.c | 107 ++ httpuv-1.5.1/httpuv/src/libuv/test/runner-win.c | 14 httpuv-1.5.1/httpuv/src/libuv/test/runner-win.h | 2 httpuv-1.5.1/httpuv/src/libuv/test/runner.c | 3 httpuv-1.5.1/httpuv/src/libuv/test/task.h | 9 httpuv-1.5.1/httpuv/src/libuv/test/test-barrier.c | 42 + httpuv-1.5.1/httpuv/src/libuv/test/test-close-fd.c | 6 httpuv-1.5.1/httpuv/src/libuv/test/test-condvar.c | 2 httpuv-1.5.1/httpuv/src/libuv/test/test-emfile.c | 16 httpuv-1.5.1/httpuv/src/libuv/test/test-fork.c | 3 httpuv-1.5.1/httpuv/src/libuv/test/test-fs-copyfile.c | 3 httpuv-1.5.1/httpuv/src/libuv/test/test-fs-event.c | 102 +- httpuv-1.5.1/httpuv/src/libuv/test/test-fs-poll.c | 74 + httpuv-1.5.1/httpuv/src/libuv/test/test-fs.c | 389 +++++++++- httpuv-1.5.1/httpuv/src/libuv/test/test-gethostname.c | 8 httpuv-1.5.1/httpuv/src/libuv/test/test-hrtime.c | 8 httpuv-1.5.1/httpuv/src/libuv/test/test-idna.c |only httpuv-1.5.1/httpuv/src/libuv/test/test-ip4-addr.c | 7 httpuv-1.5.1/httpuv/src/libuv/test/test-ip6-addr.c | 2 httpuv-1.5.1/httpuv/src/libuv/test/test-ipc-heavy-traffic-deadlock-bug.c | 3 httpuv-1.5.1/httpuv/src/libuv/test/test-ipc-send-recv.c | 4 httpuv-1.5.1/httpuv/src/libuv/test/test-ipc.c | 142 ++- httpuv-1.5.1/httpuv/src/libuv/test/test-list.h | 57 + httpuv-1.5.1/httpuv/src/libuv/test/test-loop-handles.c | 2 httpuv-1.5.1/httpuv/src/libuv/test/test-pipe-close-stdout-read-stdin.c | 4 httpuv-1.5.1/httpuv/src/libuv/test/test-platform-output.c | 11 httpuv-1.5.1/httpuv/src/libuv/test/test-poll-close-doesnt-corrupt-stack.c | 2 httpuv-1.5.1/httpuv/src/libuv/test/test-poll-oob.c | 5 httpuv-1.5.1/httpuv/src/libuv/test/test-poll.c | 12 httpuv-1.5.1/httpuv/src/libuv/test/test-process-priority.c | 4 httpuv-1.5.1/httpuv/src/libuv/test/test-process-title-threadsafe.c | 9 httpuv-1.5.1/httpuv/src/libuv/test/test-process-title.c | 4 httpuv-1.5.1/httpuv/src/libuv/test/test-signal-multiple-loops.c | 6 httpuv-1.5.1/httpuv/src/libuv/test/test-spawn.c | 19 httpuv-1.5.1/httpuv/src/libuv/test/test-stdio-over-pipes.c | 1 httpuv-1.5.1/httpuv/src/libuv/test/test-strscpy.c |only httpuv-1.5.1/httpuv/src/libuv/test/test-tcp-close-accept.c | 6 httpuv-1.5.1/httpuv/src/libuv/test/test-tcp-oob.c | 7 httpuv-1.5.1/httpuv/src/libuv/test/test-tcp-write-after-connect.c | 6 httpuv-1.5.1/httpuv/src/libuv/test/test-thread.c | 57 + httpuv-1.5.1/httpuv/src/libuv/test/test-tty-duplicate-key.c |only httpuv-1.5.1/httpuv/src/libuv/test/test-tty.c | 33 httpuv-1.5.1/httpuv/src/libuv/test/test-udp-connect.c |only httpuv-1.5.1/httpuv/src/libuv/test/test-udp-open.c | 81 ++ httpuv-1.5.1/httpuv/src/libuv/test/test-uname.c |only httpuv-1.5.1/httpuv/src/libuv/test/test.gyp | 7 httpuv-1.5.1/httpuv/src/libuv/uv.gyp | 10 httpuv-1.5.1/httpuv/src/staticpath.cpp | 14 httpuv-1.5.1/httpuv/src/staticpath.h | 4 httpuv-1.5.1/httpuv/src/utils.h | 6 httpuv-1.5.1/httpuv/src/webapplication.cpp | 15 httpuv-1.5.1/httpuv/tools/update_libuv.R | 2 145 files changed, 3983 insertions(+), 1561 deletions(-)
Title: Get Network Representation of an R Package
Description: Tools from the domain of graph theory can be used to quantify the complexity
and vulnerability to failure of a software package. That is the guiding philosophy
of this package. 'pkgnet' provides tools to analyze the dependencies between functions
in an R package and between its imported packages.
Author: Brian Burns [aut, cre],
James Lamb [aut],
Patrick Boueri [ctb],
Jay Qi [aut]
Maintainer: Brian Burns <brian.burns@uptake.com>
Diff between pkgnet versions 0.3.2 dated 2019-01-26 and 0.4.0 dated 2019-04-05
pkgnet-0.3.2/pkgnet/R/PackageDependencyReporter.R |only pkgnet-0.3.2/pkgnet/R/PackageFunctionReporter.R |only pkgnet-0.3.2/pkgnet/R/PackageInheritanceReporter.R |only pkgnet-0.3.2/pkgnet/R/PackageSummaryReporter.R |only pkgnet-0.3.2/pkgnet/man/AbstractGraphReporter.Rd |only pkgnet-0.3.2/pkgnet/man/AbstractPackageReporter.Rd |only pkgnet-0.3.2/pkgnet/man/doc_shared.Rd |only pkgnet-0.3.2/pkgnet/tests/testthat/setup_setTestEnv.R |only pkgnet-0.3.2/pkgnet/tests/testthat/teardown_setTestEnv.R |only pkgnet-0.3.2/pkgnet/tests/testthat/test-DependencyReporter.R |only pkgnet-0.3.2/pkgnet/tests/testthat/test-FunctionReporter.R |only pkgnet-0.3.2/pkgnet/tests/testthat/test-InheritanceReporter.R |only pkgnet-0.3.2/pkgnet/tests/testthat/test-NetworkMeasures.R |only pkgnet-0.3.2/pkgnet/tests/testthat/test-functional_structure.R |only pkgnet-0.4.0/pkgnet/DESCRIPTION | 13 pkgnet-0.4.0/pkgnet/MD5 | 119 +- pkgnet-0.4.0/pkgnet/NAMESPACE | 36 pkgnet-0.4.0/pkgnet/NEWS.md | 34 pkgnet-0.4.0/pkgnet/R/AbstractGraphReporter.R | 426 ++++------ pkgnet-0.4.0/pkgnet/R/AbstractPackageReporter.R | 178 ++-- pkgnet-0.4.0/pkgnet/R/CreatePackageReport.R | 16 pkgnet-0.4.0/pkgnet/R/CreatePackageVignette.R |only pkgnet-0.4.0/pkgnet/R/DefaultReporters.R | 4 pkgnet-0.4.0/pkgnet/R/DependencyReporter.R |only pkgnet-0.4.0/pkgnet/R/FunctionReporter.R |only pkgnet-0.4.0/pkgnet/R/GraphClasses.R |only pkgnet-0.4.0/pkgnet/R/InheritanceReporter.R |only pkgnet-0.4.0/pkgnet/R/SummaryReporter.R |only pkgnet-0.4.0/pkgnet/R/pkgnet.R | 72 + pkgnet-0.4.0/pkgnet/build/vignette.rds |binary pkgnet-0.4.0/pkgnet/inst/doc/pkgnet-intro.R | 56 - pkgnet-0.4.0/pkgnet/inst/doc/pkgnet-intro.Rmd | 92 +- pkgnet-0.4.0/pkgnet/inst/doc/pkgnet-intro.html | 301 +++---- pkgnet-0.4.0/pkgnet/inst/doc/publishing-reports.R |only pkgnet-0.4.0/pkgnet/inst/doc/publishing-reports.Rmd |only pkgnet-0.4.0/pkgnet/inst/doc/publishing-reports.html |only pkgnet-0.4.0/pkgnet/inst/package_report/footer.html | 2 pkgnet-0.4.0/pkgnet/inst/package_report/package_dependency_reporter.Rmd | 30 pkgnet-0.4.0/pkgnet/inst/package_report/package_function_reporter.Rmd | 12 pkgnet-0.4.0/pkgnet/inst/package_report/package_inheritance_reporter.Rmd | 14 pkgnet-0.4.0/pkgnet/inst/package_report/package_report.Rmd | 6 pkgnet-0.4.0/pkgnet/inst/package_report/package_vignette_template.Rmd |only pkgnet-0.4.0/pkgnet/man/CreatePackageReport.Rd | 10 pkgnet-0.4.0/pkgnet/man/CreatePackageVignette.Rd |only pkgnet-0.4.0/pkgnet/man/DefaultReporters.Rd | 6 pkgnet-0.4.0/pkgnet/man/DependencyReporter.Rd | 177 +++- pkgnet-0.4.0/pkgnet/man/DirectedGraph.Rd |only pkgnet-0.4.0/pkgnet/man/DirectedGraphMeasures.Rd |only pkgnet-0.4.0/pkgnet/man/FunctionReporter.Rd | 232 ++++- pkgnet-0.4.0/pkgnet/man/GraphClasses.Rd |only pkgnet-0.4.0/pkgnet/man/InheritanceReporter.Rd | 171 +++- pkgnet-0.4.0/pkgnet/man/NetworkReporters.Rd |only pkgnet-0.4.0/pkgnet/man/PackageReporters.Rd |only pkgnet-0.4.0/pkgnet/man/SummaryReporter.Rd | 121 ++ pkgnet-0.4.0/pkgnet/man/pkgnet-package.Rd |only pkgnet-0.4.0/pkgnet/tests/testthat.R | 48 - 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Title: Fast Statistical Hypothesis Tests on Rows and Columns of
Matrices
Description: Functions to perform fast statistical hypothesis tests on rows/columns of matrices.
The main goals are: 1) speed via vectorization, 2) output that is detailed and easy to use,
3) compatibility with tests implemented in R (like those available in the 'stats' package).
Author: Karolis Koncevičius [aut, cre]
Maintainer: Karolis Koncevičius <karolis.koncevicius@gmail.com>
Diff between matrixTests versions 0.1.1 dated 2019-03-15 and 0.1.2 dated 2019-04-05
DESCRIPTION | 8 ++++---- MD5 | 20 +++++++++++++------- NAMESPACE | 4 ++++ NEWS | 15 +++++++++++++-- R/fligner.R |only R/jarque.R |only R/utils.general.R | 2 +- man/fligner.Rd |only man/jarquebera.Rd |only tests/testthat/test-correct-flignerkilleen.R |only tests/testthat/test-correct-jarquebera.R |only tests/testthat/test-parameters-main-errors.R | 21 +++++++++++++++++++++ tests/testthat/test-parameters-special-cases.R | 20 ++++++++++++++++++++ tests/testthat/test-result-rownames.R | 10 ++++++++++ 14 files changed, 86 insertions(+), 14 deletions(-)
Title: Classes and Methods for Lagged Objects
Description: Provides classes and methods for lagged objects.
Author: Georgi N. Boshnakov [aut, cre]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between lagged versions 0.2-0 dated 2018-08-20 and 0.2-1 dated 2019-04-05
DESCRIPTION | 13 ++++++++----- MD5 | 28 +++++++++++++++++----------- NAMESPACE | 9 ++++++++- NEWS.md | 15 ++++++++++++++- R/acfutils.R |only build/vignette.rds |binary inst/doc/Guide_lagged.Rnw | 18 +++++++++--------- inst/doc/Guide_lagged.pdf |binary man/acf2Lagged.Rd | 4 ++++ man/nSeasons.Rd |only man/pc.omitneg.Rd |only man/sl2acfbase.Rd |only man/slMatrix-class.Rd | 2 +- tests |only vignettes/Guide_lagged.Rnw | 18 +++++++++--------- vignettes/Guide_lagged.org | 4 ++-- vignettes/auto/Guide_lagged.el | 12 ++++-------- 17 files changed, 76 insertions(+), 47 deletions(-)
Title: R Interface to 'Keras'
Description: Interface to 'Keras' <https://keras.io>, a high-level neural
networks 'API'. 'Keras' was developed with a focus on enabling fast experimentation,
supports both convolution based networks and recurrent networks (as well as
combinations of the two), and runs seamlessly on both 'CPU' and 'GPU' devices.
Author: Daniel Falbel [ctb, cph, cre],
JJ Allaire [aut, cph],
François Chollet [aut, cph],
RStudio [ctb, cph, fnd],
Google [ctb, cph, fnd],
Yuan Tang [ctb, cph] (<https://orcid.org/0000-0001-5243-233X>),
Wouter Van Der Bijl [ctb, cph],
Martin Studer [ctb, cph],
Sigrid Keydana [ctb]
Maintainer: Daniel Falbel <daniel@rstudio.com>
Diff between keras versions 2.2.4 dated 2018-11-22 and 2.2.4.1 dated 2019-04-05
keras-2.2.4.1/keras/DESCRIPTION | 20 - keras-2.2.4.1/keras/MD5 | 102 +++++----- keras-2.2.4.1/keras/NAMESPACE | 1 keras-2.2.4.1/keras/NEWS.md | 9 keras-2.2.4.1/keras/R/applications.R | 3 keras-2.2.4.1/keras/R/backend.R | 8 keras-2.2.4.1/keras/R/model.R | 16 + keras-2.2.4.1/keras/R/package.R | 5 keras-2.2.4.1/keras/R/preprocessing.R | 100 +++++++++ keras-2.2.4.1/keras/R/utils.R | 34 ++- keras-2.2.4.1/keras/build/vignette.rds |binary keras-2.2.4.1/keras/inst/doc/about_keras_layers.html | 24 ++ keras-2.2.4.1/keras/inst/doc/about_keras_models.html | 24 ++ keras-2.2.4.1/keras/inst/doc/applications.html | 24 ++ keras-2.2.4.1/keras/inst/doc/backend.html | 24 ++ keras-2.2.4.1/keras/inst/doc/custom_layers.html | 24 ++ keras-2.2.4.1/keras/inst/doc/custom_models.html | 24 ++ keras-2.2.4.1/keras/inst/doc/custom_wrappers.html | 24 ++ keras-2.2.4.1/keras/inst/doc/eager_guide.html | 24 ++ keras-2.2.4.1/keras/inst/doc/faq.html | 24 ++ keras-2.2.4.1/keras/inst/doc/functional_api.html | 24 ++ keras-2.2.4.1/keras/inst/doc/getting_started.R | 2 keras-2.2.4.1/keras/inst/doc/getting_started.Rmd | 4 keras-2.2.4.1/keras/inst/doc/getting_started.html | 28 ++ keras-2.2.4.1/keras/inst/doc/guide_keras.html | 24 ++ keras-2.2.4.1/keras/inst/doc/sequential_model.html | 24 ++ keras-2.2.4.1/keras/inst/doc/training_callbacks.html | 24 ++ keras-2.2.4.1/keras/inst/doc/training_visualization.html | 24 ++ keras-2.2.4.1/keras/inst/doc/tutorial_basic_classification.html | 24 ++ keras-2.2.4.1/keras/inst/doc/tutorial_basic_regression.html | 24 ++ keras-2.2.4.1/keras/inst/doc/tutorial_basic_text_classification.html | 24 ++ keras-2.2.4.1/keras/inst/doc/tutorial_overfit_underfit.html | 24 ++ keras-2.2.4.1/keras/inst/doc/tutorial_save_and_restore.html | 24 ++ keras-2.2.4.1/keras/inst/python/kerastools/callback.py | 6 keras-2.2.4.1/keras/inst/python/kerastools/constraint.py | 6 keras-2.2.4.1/keras/inst/python/kerastools/generator.py | 9 keras-2.2.4.1/keras/inst/python/kerastools/layer.py | 11 - keras-2.2.4.1/keras/inst/python/kerastools/model.py | 9 keras-2.2.4.1/keras/inst/python/kerastools/progbar.py | 6 keras-2.2.4.1/keras/inst/python/kerastools/wrapper.py | 12 - keras-2.2.4.1/keras/man/application_mobilenet_v2.Rd | 7 keras-2.2.4.1/keras/man/fit_image_data_generator.Rd | 3 keras-2.2.4.1/keras/man/flow_images_from_data.Rd | 1 keras-2.2.4.1/keras/man/flow_images_from_dataframe.Rd |only keras-2.2.4.1/keras/man/flow_images_from_directory.Rd | 1 keras-2.2.4.1/keras/man/image_load.Rd | 1 keras-2.2.4.1/keras/man/image_to_array.Rd | 1 keras-2.2.4.1/keras/man/keras-package.Rd | 4 keras-2.2.4.1/keras/tests/testthat/test-backend.R | 17 + keras-2.2.4.1/keras/tests/testthat/test-model-persistence.R | 2 keras-2.2.4.1/keras/tests/testthat/test-preprocessing.R | 29 ++ keras-2.2.4.1/keras/vignettes/getting_started.Rmd | 4 keras-2.2.4/keras/vignettes/checkpoints.h5 |only 53 files changed, 750 insertions(+), 167 deletions(-)
Title: Calculates Demographic Indicators
Description: Calculates key indicators such as fertility rates (Total Fertility Rate (TFR), General Fertility Rate (GFR),
and Age Specific Fertility Rate (ASFR)) using Demographic and Health Survey (DHS) women/individual data,
and childhood mortality probabilities and rates such as Neonatal Mortality Rate (NNMR), Post-neonatal Mortality Rate (PNNMR),
Infant Mortality Rate (IMR), Child Mortality Rate (CMR), and Under-five Mortality Rate (U5MR).
In addition to the indicators, the 'DHS.rates' package estimates sampling errors indicators such as Standard Error (SE),
Design Effect (DEFT), Relative Standard Error (RSE) and Confidence Interval (CI).
The package is developed according to the DHS methodology of calculating the fertility indicators and
the childhood mortality rates outlined in the
"Guide to DHS Statistics" (Croft, Trevor N., Aileen M. J. Marshall, Courtney K. Allen, et al. 2018, <https://dhsprogram.com/Data/Guide-to-DHS-Statistics/index.cfm>)
and the DHS methodology of estimating the sampling errors indicators outlined in
the "DHS Sampling and Household Listing Manual" (ICF International 2012, <https://dhsprogram.com/pubs/pdf/DHSM4/DHS6_Sampling_Manual_Sept2012_DHSM4.pdf>).
Author: Mahmoud Elkasabi
Maintainer: Mahmoud Elkasabi <mahmoud.elkasabi@icf.com>
Diff between DHS.rates versions 0.6.0 dated 2019-01-27 and 0.7.0 dated 2019-04-05
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/ASFR.R | 8 ++++++-- R/GFR.R | 10 ++++++++-- R/TFR.R | 9 +++++++-- R/chmort.R | 8 +++++--- R/chmortp.R | 8 ++++++-- build/vignette.rds |binary inst/doc/DHS.rates.html | 37 ++++++++++++++++++++++++------------- 9 files changed, 68 insertions(+), 36 deletions(-)
Title: Spatial Dependence: Weighting Schemes, Statistics and Models
Description: A collection of functions to create spatial weights matrix
objects from polygon 'contiguities', from point patterns by distance and
tessellations, for summarizing these objects, and for permitting their
use in spatial data analysis, including regional aggregation by minimum
spanning tree; a collection of tests for spatial 'autocorrelation',
including global 'Morans I' and 'Gearys C' proposed by 'Cliff' and 'Ord'
(1973, ISBN: 0850860369) and (1981, ISBN: 0850860814), 'Hubert/Mantel'
general cross product statistic, Empirical Bayes estimates and
'Assunção/Reis' (1999) <doi:10.1002/(SICI)1097-0258(19990830)18:16%3C2147::AID-SIM179%3E3.0.CO;2-I> Index, 'Getis/Ord' G ('Getis' and 'Ord' 1992)
<doi:10.1111/j.1538-4632.1992.tb00261.x> and multicoloured
join count statistics, 'APLE' ('Li 'et al.' )
<doi:10.1111/j.1538-4632.2007.00708.x>, local 'Moran's I'
('Anselin' 1995) <doi:10.1111/j.1538-4632.1995.tb00338.x> and
'Getis/Ord' G ('Ord' and 'Getis' 1995)
<doi:10.1111/j.1538-4632.1995.tb00912.x>,
'saddlepoint' approximations ('Tiefelsdorf' 2002)
<doi:10.1111/j.1538-4632.2002.tb01084.x> and exact tests
for global and local 'Moran's I' ('Bivand et al.' 2009)
<doi:10.1016/j.csda.2008.07.021> and 'LOSH' local indicators
of spatial heteroscedasticity ('Ord' and 'Getis')
<doi:10.1007/s00168-011-0492-y>. The implementation of most of
the measures is described in 'Bivand' and 'Wong' (2018)
<doi:10.1007/s11749-018-0599-x>.
'spdep' >= 1.1-1 corresponds to 'spatialreg' >= 1.1-1, in which the model
fitting functions are deprecated and pass through to 'spatialreg', but
will mask those in 'spatialreg'. From versions 1.2-1, the functions will
be made defunct in 'spdep'.
For now 'spatialreg' only has functions from 'spdep', where they are shown
as deprecated. 'spatialreg' only loads the namespace of 'spdep'; if you
attach 'spdep', the same functions in the other package will be masked.
Some feed through adequately, others do not.
Author: Roger Bivand [cre, aut] (<https://orcid.org/0000-0003-2392-6140>),
Micah Altman [ctb],
Luc Anselin [ctb],
Renato Assunção [ctb],
Olaf Berke [ctb],
Andrew Bernat [ctb],
Guillaume Blanchet [ctb],
Eric Blankmeyer [ctb],
Marilia Carvalho [ctb],
Bjarke Christensen [ctb],
Yongwan Chun [ctb],
Carsten Dormann [ctb],
Stéphane Dray [ctb],
Virgilio Gómez-Rubio [ctb],
Martin Gubri [ctb],
Rein Halbersma [ctb],
Elias Krainski [ctb],
Pierre Legendre [ctb],
Nicholas Lewin-Koh [ctb],
Angela Li [ctb],
Hongfei Li [ctb],
Jielai Ma [ctb],
Abhirup Mallik [ctb, trl],
Giovanni Millo [ctb],
Werner Mueller [ctb],
Hisaji Ono [ctb],
Pedro Peres-Neto [ctb],
Gianfranco Piras [ctb],
Markus Reder [ctb],
Michael Tiefelsdorf [ctb],
René Westerholt [ctb],
Danlin Yu [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between spdep versions 1.0-2 dated 2019-02-13 and 1.1-2 dated 2019-04-05
spdep-1.0-2/spdep/inst/doc/SpatialFiltering.R |only spdep-1.0-2/spdep/inst/doc/SpatialFiltering.Rmd |only spdep-1.0-2/spdep/inst/doc/SpatialFiltering.html |only spdep-1.0-2/spdep/man/GMerrorsar.Rd |only spdep-1.0-2/spdep/man/LR.sarlm.Rd |only spdep-1.0-2/spdep/man/MCMCsamp.Rd |only spdep-1.0-2/spdep/man/ME.Rd |only spdep-1.0-2/spdep/man/SpatialFiltering.Rd |only spdep-1.0-2/spdep/man/anova.sarlm.Rd |only spdep-1.0-2/spdep/man/as_dgRMatrix_listw.Rd |only spdep-1.0-2/spdep/man/bptest.sarlm.Rd |only spdep-1.0-2/spdep/man/do_ldet.Rd |only spdep-1.0-2/spdep/man/eigenw.Rd |only spdep-1.0-2/spdep/man/errorsarlm.Rd |only spdep-1.0-2/spdep/man/gstsls.Rd |only spdep-1.0-2/spdep/man/impacts.sarlm.Rd |only spdep-1.0-2/spdep/man/lagmess.Rd |only spdep-1.0-2/spdep/man/lagsarlm.Rd |only spdep-1.0-2/spdep/man/lextrB.Rd |only spdep-1.0-2/spdep/man/predict.sarlm.Rd |only spdep-1.0-2/spdep/man/residuals.sarlm.Rd |only spdep-1.0-2/spdep/man/sacsarlm.Rd |only spdep-1.0-2/spdep/man/similar.listw.Rd |only spdep-1.0-2/spdep/man/spautolm.Rd |only spdep-1.0-2/spdep/man/stsls.Rd |only spdep-1.0-2/spdep/man/summary.sarlm.Rd |only spdep-1.0-2/spdep/man/trW.Rd |only spdep-1.0-2/spdep/vignettes/SpatialFiltering.Rmd |only spdep-1.1-2/spdep/DESCRIPTION | 56 ++-- spdep-1.1-2/spdep/MD5 | 135 +++------ spdep-1.1-2/spdep/NAMESPACE | 312 ++++++++++++----------- spdep-1.1-2/spdep/R/AAA.R | 4 spdep-1.1-2/spdep/R/LR.spsarlm.R | 18 + spdep-1.1-2/spdep/R/ME.R | 36 ++ spdep-1.1-2/spdep/R/SpatialFiltering.R | 35 ++ spdep-1.1-2/spdep/R/anova.sarlm.R | 9 spdep-1.1-2/spdep/R/aple.R | 2 spdep-1.1-2/spdep/R/bptest.sarlm.R | 9 spdep-1.1-2/spdep/R/eigenw.R | 29 ++ spdep-1.1-2/spdep/R/error.hessian.R | 3 spdep-1.1-2/spdep/R/error.spsarlm.R | 42 +++ spdep-1.1-2/spdep/R/impacts.R | 286 ++++++--------------- spdep-1.1-2/spdep/R/jacobian.R | 203 +++++++++++++- spdep-1.1-2/spdep/R/jacobian_setup.R | 94 ++++++ spdep-1.1-2/spdep/R/kpgm_new.R | 151 ++++++++++- spdep-1.1-2/spdep/R/lag.hessian.R | 4 spdep-1.1-2/spdep/R/lag.spsarlm.R | 14 - spdep-1.1-2/spdep/R/lextrB.R | 30 +- spdep-1.1-2/spdep/R/lextrW.R | 23 + spdep-1.1-2/spdep/R/listw2Matrix.R | 87 ++++++ spdep-1.1-2/spdep/R/listw2sn.R | 22 + spdep-1.1-2/spdep/R/mcmcsamp.R | 20 + spdep-1.1-2/spdep/R/mess.R | 107 +++++++ spdep-1.1-2/spdep/R/nb2listw.R | 101 +------ spdep-1.1-2/spdep/R/nb2mat.R | 20 + spdep-1.1-2/spdep/R/s2sls.R | 120 ++++++++ spdep-1.1-2/spdep/R/sacsarlm.R | 16 - spdep-1.1-2/spdep/R/sarlm.R | 209 +++++++++++++++ spdep-1.1-2/spdep/R/spBreg.R | 60 ++++ spdep-1.1-2/spdep/R/spautolm.R | 102 +++++++ spdep-1.1-2/spdep/R/summary.spsarlm.R | 68 ++++- spdep-1.1-2/spdep/build/vignette.rds |binary spdep-1.1-2/spdep/inst/CITATION | 36 -- spdep-1.1-2/spdep/inst/doc/CO69.html | 6 spdep-1.1-2/spdep/inst/doc/nb.pdf |binary spdep-1.1-2/spdep/inst/doc/nb_igraph.R | 1 spdep-1.1-2/spdep/inst/doc/nb_igraph.Rmd | 1 spdep-1.1-2/spdep/inst/doc/nb_igraph.html | 29 +- spdep-1.1-2/spdep/inst/doc/nb_sf.html | 36 +- spdep-1.1-2/spdep/inst/doc/sids.R | 44 --- spdep-1.1-2/spdep/inst/doc/sids.Rmd | 92 ------ spdep-1.1-2/spdep/inst/doc/sids.html | 171 ------------ spdep-1.1-2/spdep/man/invIrM.Rd | 34 -- spdep-1.1-2/spdep/man/listw2sn.Rd | 12 spdep-1.1-2/spdep/man/localmoran.exact.Rd | 14 - spdep-1.1-2/spdep/man/localmoran.sad.Rd | 12 spdep-1.1-2/spdep/man/mat2listw.Rd | 2 spdep-1.1-2/spdep/man/nb2listw.Rd | 3 spdep-1.1-2/spdep/man/spdep-deprecated.Rd |only spdep-1.1-2/spdep/src/init.c | 34 +- spdep-1.1-2/spdep/src/spdep.h | 38 +- spdep-1.1-2/spdep/vignettes/nb_igraph.Rmd | 1 spdep-1.1-2/spdep/vignettes/sids.Rmd | 92 ------ 83 files changed, 1968 insertions(+), 1117 deletions(-)
Title: Daily Streamflow Trend and Change Point Screening
Description: Screens daily streamflow time series for temporal trends and
change-points. This package has been primarily developed for assessing the
quality of daily streamflow time series. It also contains tools for plotting
and calculating many different streamflow metrics. The package can be used to
produce summary screening plots showing change-points and significant temporal
trends for high flow, low flow, and/or baseflow statistics, or it can be used
to perform more detailed hydrological time series analyses. The package was
designed for screening daily streamflow time series from Water Survey Canada
and the United States Geological Survey but will also work with streamflow time
series from many other agencies.
Author: Jennifer Dierauer [aut, cre],
Paul Whitfield [aut]
Maintainer: Jennifer Dierauer <jen.r.brand@gmail.com>
Diff between FlowScreen versions 1.2.5 dated 2018-05-07 and 1.2.6 dated 2019-04-05
DESCRIPTION | 8 +-- MD5 | 88 ++++++++++++++++++++--------------------- R/create.ts.r | 2 R/hyear.internal.r | 37 ++++++++++------- man/FDC.Rd | 7 +-- man/FlowScreen.Rd | 4 - man/MAMn.Rd | 7 +-- man/NA.runs.Rd | 7 +-- man/NA.sum.Rd | 7 +-- man/Qn.Rd | 1 man/YMD.internal.Rd | 1 man/axis_doy.internal.Rd | 1 man/bf.seas.Rd | 7 +-- man/bf.stats.Rd | 1 man/bf_boughton.Rd | 7 +-- man/bf_eckhardt.Rd | 7 +-- man/bf_oneparam.Rd | 7 +-- man/cania.sub.ts.Rd | 1 man/caniapiscau.Rd | 1 man/caniapiscau.res.Rd | 1 man/create.ts.Rd | 1 man/dr.events.Rd | 7 +-- man/dr.pds.Rd | 7 +-- man/dr.seas.Rd | 7 +-- man/get.station.internal.Rd | 1 man/get.titles.internal.Rd | 1 man/hyear.internal.Rd | 1 man/metrics.all.Rd | 7 +-- man/mqt.Rd | 7 +-- man/pk.bf.stats.Rd | 1 man/pk.cov.Rd | 1 man/pk.max.Rd | 7 +-- man/pk.max.doy.Rd | 7 +-- man/pks.Rd | 1 man/pks.dur.Rd | 1 man/read.flows.Rd | 1 man/regime.Rd | 1 man/screen.cpts.Rd | 7 +-- man/screen.frames.Rd | 1 man/screen.frames.internal.Rd | 1 man/screen.metric.Rd | 7 +-- man/screen.series.Rd | 1 man/screen.summary.Rd | 7 +-- man/screen.summary.internal.Rd | 1 man/station.info.Rd | 1 45 files changed, 167 insertions(+), 120 deletions(-)
Title: Path Diagrams and Visual Analysis of Various SEM Packages'
Output
Description: Path diagrams and visual analysis of various SEM packages' output.
Author: Sacha Epskamp [aut, cre],
Simon Stuber [ctb],
Jason Nak [ctb],
Myrthe Veenman [ctb]
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between semPlot versions 1.1 dated 2017-03-27 and 1.1.1 dated 2019-04-05
DESCRIPTION | 19 ++++++++++++++----- MD5 | 24 ++++++++++++++---------- NAMESPACE | 10 ++++++++-- NEWS | 3 +++ R/00classes.R | 4 ++-- R/cvregsemplot.R |only R/lavaan.R | 17 +++++++++++++---- R/lists.R | 6 +++--- R/mplus.R | 36 ++++++++++++++++++++++++------------ R/regsemplot.R |only R/semPaths.R | 9 +++++---- man/cvregsemplot.Rd |only man/modelMatrices.Rd | 5 +---- man/regsemplot.Rd |only man/semPlotModel.Rd | 5 ++++- 15 files changed, 91 insertions(+), 47 deletions(-)
Title: One-Way Tests in Independent Groups Designs
Description: Performs one-way tests in independent groups designs, pairwise comparisons, graphical approaches, assesses variance homogeneity and normality of data in each group via tests and plots (Dag et al., 2018, <https://journal.r-project.org/archive/2018/RJ-2018-022/RJ-2018-022.pdf>).
Author: Osman Dag [aut, cre], Anil Dolgun [aut], N. Meric Konar [aut]
Maintainer: Osman Dag <osman.dag@hacettepe.edu.tr>
Diff between onewaytests versions 2.0 dated 2019-02-04 and 2.1 dated 2019-04-05
DESCRIPTION | 8 ++++---- MD5 | 10 ++++++---- NAMESPACE | 2 +- R/paircomp.R | 1 + R/ss.test.R |only man/gplot.Rd | 2 +- man/ss.test.Rd |only 7 files changed, 13 insertions(+), 10 deletions(-)
Title: R Interface to 'TensorFlow'
Description: Interface to 'TensorFlow' <https://www.tensorflow.org/>,
an open source software library for numerical computation using data
flow graphs. Nodes in the graph represent mathematical operations,
while the graph edges represent the multidimensional data arrays
(tensors) communicated between them. The flexible architecture allows
you to deploy computation to one or more 'CPUs' or 'GPUs' in a desktop,
server, or mobile device with a single 'API'. 'TensorFlow' was originally
developed by researchers and engineers working on the Google Brain Team
within Google's Machine Intelligence research organization for the
purposes of conducting machine learning and deep neural networks research,
but the system is general enough to be applicable in a wide variety
of other domains as well.
Author: Daniel Falbel [ctb, cph, cre],
JJ Allaire [aut, cph],
RStudio [cph, fnd],
Yuan Tang [aut, cph] (<https://orcid.org/0000-0001-5243-233X>),
Dirk Eddelbuettel [ctb, cph],
Nick Golding [ctb, cph],
Tomasz Kalinowski [ctb, cph],
Google Inc. [ctb, cph] (Examples and Tutorials)
Maintainer: Daniel Falbel <daniel@rstudio.com>
Diff between tensorflow versions 1.10 dated 2018-11-19 and 1.13.1 dated 2019-04-05
DESCRIPTION | 16 +++--- MD5 | 34 +++++++------ NAMESPACE | 8 +++ NEWS.md |only R/compat.R |only R/extract.R | 12 ++-- R/generics.R | 30 ++++++++++- R/install.R | 36 ++++++++----- R/package.R | 78 ++++++++++++++++++++++++++---- R/probability.R |only R/save.R | 1 man/install_tensorflow.Rd | 3 - man/sub-.tensorflow.tensor.Rd | 10 +-- man/tf_gpu_configured.Rd |only man/tf_probability.Rd |only man/use_compat.Rd |only tests/testthat/test-examples.R | 17 ++++-- tests/testthat/test-export-savedmodel.R | 83 +++++++++++++++++++++++++------- tests/testthat/test-extract-syntax.R | 70 +++++++++++++++----------- tests/testthat/test-generic-methods.R | 18 +----- tests/testthat/utils.R | 12 +++- 21 files changed, 304 insertions(+), 124 deletions(-)
Title: Functions to Analyze Single System Data
Description: Functions to visually and statistically analyze single system data.
Author: Charles Auerbach [aut, cre],
Wendy Zeitlin [aut]
Maintainer: Charles Auerbach <auerbach@yu.edu>
Diff between SSDforR versions 1.5.3 dated 2019-03-17 and 1.5.4 dated 2019-04-05
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/ABstat.R | 8 ++++---- R/Gline.R | 11 ++++++----- R/Trimline.R | 15 +++++++++------ 5 files changed, 27 insertions(+), 23 deletions(-)
Title: Interfaces to Various State-of-Art SVD and Eigensolvers
Description: R bindings to SVD and eigensolvers (PROPACK, nuTRLan).
Author: Anton Korobeynikov [aut, cre], Rasmus Munk Larsen [ctb, cph], Lawrence Berkeley National Laboratory [ctb, cph]
Maintainer: Anton Korobeynikov <anton@korobeynikov.info>
Diff between svd versions 0.4.2 dated 2019-03-07 and 0.4.3 dated 2019-04-05
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NAMESPACE | 3 +-- man/eigen.Rd | 4 +--- man/extmat.Rd | 4 +--- src/trlan/trlan.c | 2 +- src/trlan/trlaux.c | 6 +++--- src/trlan/trlcore.c | 4 ++-- src/trlan/ztrlcore.c | 2 +- 9 files changed, 21 insertions(+), 26 deletions(-)
Title: Spatial Survey Design and Analysis
Description: These functions provide procedures for selecting sites for spatial
surveys using spatially balanced algorithms applied to discrete points,
linear networks, or polygons. The probability survey designs available
include independent random samples, stratified random samples, and unequal
probability random samples (categorical or probability proportional to
size). Design-based estimation based on the results from surveys is
available for estimating totals, means, quantiles, CDFs, and linear models.
The analyses rely on package survey for most results. Variance estimation
options include a local neighborhood variance estimator that is appropriate
for spatially-balanced survey designs. A reference for the survey design
portion of the package is: D. L. Stevens, Jr. and A. R. Olsen (2004),
"Spatially-balanced sampling of natural resources.", Journal of the American
Statistical Association 99(465): 262-278, <DOI:10.1198/016214504000000250>.
Additional helpful references for this package are A. R. Olsen, T. M.
Kincaid, and Q. Payton (2012) and T. M. Kincaid and A. R. Olsen (2012), both
of which are chapters in the book "Design and Analysis of Long-Term
Ecological Monitoring Studies" (R. A. Gitzen, J. J. Millspaugh, A. B.
Cooper, and D. S. Licht (eds.), Cambridge University Press, New York,
<Online ISBN:9781139022422>).
Author: Tom Kincaid [aut, cre],
Tony Olsen [aut],
Don Stevens [ctb],
Christian Platt [ctb],
Denis White [ctb],
Richard Remington [ctb]
Maintainer: Tom Kincaid <Kincaid.Tom@epa.gov>
Diff between spsurvey versions 3.4 dated 2018-06-13 and 4.0.0 dated 2019-04-05
spsurvey-3.4/spsurvey/R/AAA.R |only spsurvey-3.4/spsurvey/R/SpatialDesign-class.R |only spsurvey-3.4/spsurvey/R/SpatialDesign-methods.R |only spsurvey-3.4/spsurvey/R/attisk.est.R |only spsurvey-3.4/spsurvey/man/SpatialDesign-methods.Rd |only spsurvey-3.4/spsurvey/man/spsurvey-internal.Rd |only spsurvey-4.0.0/spsurvey/DESCRIPTION | 49 - spsurvey-4.0.0/spsurvey/MD5 | 497 ++++++---- spsurvey-4.0.0/spsurvey/NAMESPACE | 177 +++ spsurvey-4.0.0/spsurvey/R/FL_lakes.R |only spsurvey-4.0.0/spsurvey/R/IN_streams.R |only spsurvey-4.0.0/spsurvey/R/Luck_Ash_streams.R |only spsurvey-4.0.0/spsurvey/R/NE_lakes.R |only spsurvey-4.0.0/spsurvey/R/NLA_2007.R |only spsurvey-4.0.0/spsurvey/R/NRSA_2009.R |only spsurvey-4.0.0/spsurvey/R/SC_estuaries.R |only spsurvey-4.0.0/spsurvey/R/SpatialDesign_class.R |only spsurvey-4.0.0/spsurvey/R/SpatialDesign_methods.R |only spsurvey-4.0.0/spsurvey/R/UT_ecoregions.R |only spsurvey-4.0.0/spsurvey/R/aaa.R |only spsurvey-4.0.0/spsurvey/R/adjwgt.R | 73 - spsurvey-4.0.0/spsurvey/R/albersgeod.R | 75 - spsurvey-4.0.0/spsurvey/R/ash1.wgt.R | 95 +- spsurvey-4.0.0/spsurvey/R/attrisk.analysis.R | 318 +++--- spsurvey-4.0.0/spsurvey/R/attrisk.est.R |only spsurvey-4.0.0/spsurvey/R/attrisk.var.R | 225 ++-- spsurvey-4.0.0/spsurvey/R/cat.analysis.R | 404 ++++---- spsurvey-4.0.0/spsurvey/R/category.est.R | 345 ++++--- spsurvey-4.0.0/spsurvey/R/catvar.prop.R | 195 ++-- spsurvey-4.0.0/spsurvey/R/catvar.size.R | 196 ++-- spsurvey-4.0.0/spsurvey/R/cdf.decon.R | 413 ++++---- spsurvey-4.0.0/spsurvey/R/cdf.est.R | 390 ++++---- spsurvey-4.0.0/spsurvey/R/cdf.nresp.R | 66 - spsurvey-4.0.0/spsurvey/R/cdf.plot.R | 192 ++-- spsurvey-4.0.0/spsurvey/R/cdf.prop.R | 71 - spsurvey-4.0.0/spsurvey/R/cdf.size.prop.R | 78 - spsurvey-4.0.0/spsurvey/R/cdf.size.total.R | 107 +- spsurvey-4.0.0/spsurvey/R/cdf.test.R | 547 ++++++----- spsurvey-4.0.0/spsurvey/R/cdf.test.prop.R | 69 - spsurvey-4.0.0/spsurvey/R/cdf.test.size.prop.R | 79 - spsurvey-4.0.0/spsurvey/R/cdf.total.R | 98 +- spsurvey-4.0.0/spsurvey/R/cdfvar.prop.R | 205 ++-- spsurvey-4.0.0/spsurvey/R/cdfvar.size.prop.R | 218 ++-- spsurvey-4.0.0/spsurvey/R/cdfvar.size.total.R | 233 ++-- spsurvey-4.0.0/spsurvey/R/cdfvar.test.R | 254 +++-- spsurvey-4.0.0/spsurvey/R/cdfvar.total.R | 224 ++-- spsurvey-4.0.0/spsurvey/R/cell.wt.R | 40 spsurvey-4.0.0/spsurvey/R/change.analysis.R | 457 +++++---- spsurvey-4.0.0/spsurvey/R/change.est.R | 538 ++++++----- spsurvey-4.0.0/spsurvey/R/changevar.mean.R | 226 ++-- spsurvey-4.0.0/spsurvey/R/changevar.prop.R | 240 ++--- spsurvey-4.0.0/spsurvey/R/changevar.size.R | 240 ++--- spsurvey-4.0.0/spsurvey/R/cont.analysis.R | 499 +++++----- spsurvey-4.0.0/spsurvey/R/cont.cdfplot.R | 177 ++- spsurvey-4.0.0/spsurvey/R/cont.cdftest.R | 431 +++++---- spsurvey-4.0.0/spsurvey/R/cov.panel.dsgn.R |only spsurvey-4.0.0/spsurvey/R/dcdf.prop.R | 72 - spsurvey-4.0.0/spsurvey/R/dcdf.size.prop.R | 154 +-- spsurvey-4.0.0/spsurvey/R/dcdf.size.total.R | 194 ++-- spsurvey-4.0.0/spsurvey/R/dcdf.total.R | 99 +- spsurvey-4.0.0/spsurvey/R/dcdfvar.prop.R | 634 +++++++------ spsurvey-4.0.0/spsurvey/R/dcdfvar.size.prop.R | 650 +++++++------ spsurvey-4.0.0/spsurvey/R/dcdfvar.size.total.R | 754 ++++++++-------- spsurvey-4.0.0/spsurvey/R/dcdfvar.total.R | 740 ++++++++------- spsurvey-4.0.0/spsurvey/R/decon_data.R |only spsurvey-4.0.0/spsurvey/R/dframe.check.R | 62 - spsurvey-4.0.0/spsurvey/R/dsgnsum.R | 101 +- spsurvey-4.0.0/spsurvey/R/examine.R | 71 - spsurvey-4.0.0/spsurvey/R/framesum.R | 200 ++-- spsurvey-4.0.0/spsurvey/R/geodalbers.R | 170 +-- spsurvey-4.0.0/spsurvey/R/grts.R | 351 ++++--- spsurvey-4.0.0/spsurvey/R/grtsarea.R | 120 +- spsurvey-4.0.0/spsurvey/R/grtslin.R | 112 +- spsurvey-4.0.0/spsurvey/R/grtspts.R | 120 +- spsurvey-4.0.0/spsurvey/R/input.check.R | 176 ++- spsurvey-4.0.0/spsurvey/R/input.format.R | 56 - spsurvey-4.0.0/spsurvey/R/interp.axis.R | 44 spsurvey-4.0.0/spsurvey/R/interp.cdf.R | 42 spsurvey-4.0.0/spsurvey/R/irs.R | 302 +++--- spsurvey-4.0.0/spsurvey/R/irsarea.R | 73 - spsurvey-4.0.0/spsurvey/R/irslin.R | 51 - spsurvey-4.0.0/spsurvey/R/irspts.R | 37 spsurvey-4.0.0/spsurvey/R/isotonic.R | 107 +- spsurvey-4.0.0/spsurvey/R/localmean.cov.R | 128 +- spsurvey-4.0.0/spsurvey/R/localmean.df.R | 35 spsurvey-4.0.0/spsurvey/R/localmean.var.R | 72 - spsurvey-4.0.0/spsurvey/R/localmean.weight.R | 167 +-- spsurvey-4.0.0/spsurvey/R/localmean.weight2.R | 129 +- spsurvey-4.0.0/spsurvey/R/marinus.R | 89 - spsurvey-4.0.0/spsurvey/R/mdmarea.R | 32 spsurvey-4.0.0/spsurvey/R/mdmlin.R | 30 spsurvey-4.0.0/spsurvey/R/mdmpts.R | 27 spsurvey-4.0.0/spsurvey/R/panel_summary.R |only spsurvey-4.0.0/spsurvey/R/plot_powerpaneldesign.R |only spsurvey-4.0.0/spsurvey/R/power.dsgn.R |only spsurvey-4.0.0/spsurvey/R/read.dbf.R | 46 spsurvey-4.0.0/spsurvey/R/read.sas.R | 79 - spsurvey-4.0.0/spsurvey/R/read.shape.R | 79 - spsurvey-4.0.0/spsurvey/R/relrisk.analysis.R | 327 +++--- spsurvey-4.0.0/spsurvey/R/relrisk.est.R | 451 +++++---- spsurvey-4.0.0/spsurvey/R/relrisk.var.R | 228 ++-- spsurvey-4.0.0/spsurvey/R/revisit_bibd.R |only spsurvey-4.0.0/spsurvey/R/revisit_dsgn.R |only spsurvey-4.0.0/spsurvey/R/revisit_rand.R |only spsurvey-4.0.0/spsurvey/R/sbcframe.R | 97 +- spsurvey-4.0.0/spsurvey/R/sbcsamp.R | 64 - spsurvey-4.0.0/spsurvey/R/selectframe.R | 39 spsurvey-4.0.0/spsurvey/R/selectpts.R | 41 spsurvey-4.0.0/spsurvey/R/selectrecordID.R | 49 - spsurvey-4.0.0/spsurvey/R/shape2spList.R | 54 - spsurvey-4.0.0/spsurvey/R/simex.R | 191 ++-- spsurvey-4.0.0/spsurvey/R/sorted.R | 59 - spsurvey-4.0.0/spsurvey/R/sp2shape.R | 56 - spsurvey-4.0.0/spsurvey/R/spbalance.R | 170 ++- spsurvey-4.0.0/spsurvey/R/spsurvey.R |only spsurvey-4.0.0/spsurvey/R/spsurvey.analysis.R | 577 ++++++------ spsurvey-4.0.0/spsurvey/R/total.est.R | 314 +++--- spsurvey-4.0.0/spsurvey/R/total.var.R | 202 ++-- spsurvey-4.0.0/spsurvey/R/uniqueID.R | 27 spsurvey-4.0.0/spsurvey/R/vecprint.R | 55 - spsurvey-4.0.0/spsurvey/R/warnprnt.R | 35 spsurvey-4.0.0/spsurvey/R/wnas.R | 50 - spsurvey-4.0.0/spsurvey/R/write.dbf.R | 39 spsurvey-4.0.0/spsurvey/R/write.object.R | 103 +- spsurvey-4.0.0/spsurvey/build/vignette.rds |binary spsurvey-4.0.0/spsurvey/data/FL_lakes.rda |binary spsurvey-4.0.0/spsurvey/data/IN_streams.rda |binary spsurvey-4.0.0/spsurvey/data/Luck_Ash_streams.rda |binary spsurvey-4.0.0/spsurvey/data/NE_lakes.rda |binary spsurvey-4.0.0/spsurvey/data/NLA_2007.rda |binary spsurvey-4.0.0/spsurvey/data/NRSA_2009.rda |binary spsurvey-4.0.0/spsurvey/data/SC_estuaries.rda |binary spsurvey-4.0.0/spsurvey/data/UT_ecoregions.rda |binary spsurvey-4.0.0/spsurvey/data/decon_data.rda |binary spsurvey-4.0.0/spsurvey/inst/CITATION | 8 spsurvey-4.0.0/spsurvey/inst/NEWS.Rd | 27 spsurvey-4.0.0/spsurvey/inst/doc/Area_Analysis.R | 3 spsurvey-4.0.0/spsurvey/inst/doc/Area_Analysis.Rnw | 12 spsurvey-4.0.0/spsurvey/inst/doc/Area_Analysis.pdf |binary spsurvey-4.0.0/spsurvey/inst/doc/Area_Design.R | 1 spsurvey-4.0.0/spsurvey/inst/doc/Area_Design.Rnw | 5 spsurvey-4.0.0/spsurvey/inst/doc/Area_Design.pdf |binary spsurvey-4.0.0/spsurvey/inst/doc/CDF_Analysis.R | 1 spsurvey-4.0.0/spsurvey/inst/doc/CDF_Analysis.Rnw | 9 spsurvey-4.0.0/spsurvey/inst/doc/CDF_Analysis.pdf |binary spsurvey-4.0.0/spsurvey/inst/doc/CDF_Deconvolution.R | 1 spsurvey-4.0.0/spsurvey/inst/doc/CDF_Deconvolution.Rnw | 3 spsurvey-4.0.0/spsurvey/inst/doc/CDF_Deconvolution.pdf |binary spsurvey-4.0.0/spsurvey/inst/doc/CHANGES.pdf |binary spsurvey-4.0.0/spsurvey/inst/doc/Change_Analysis.R | 1 spsurvey-4.0.0/spsurvey/inst/doc/Change_Analysis.Rnw | 5 spsurvey-4.0.0/spsurvey/inst/doc/Change_Analysis.pdf |binary spsurvey-4.0.0/spsurvey/inst/doc/Finite_Analysis.R | 1 spsurvey-4.0.0/spsurvey/inst/doc/Finite_Analysis.Rnw | 5 spsurvey-4.0.0/spsurvey/inst/doc/Finite_Analysis.pdf |binary spsurvey-4.0.0/spsurvey/inst/doc/Finite_Design.R | 1 spsurvey-4.0.0/spsurvey/inst/doc/Finite_Design.Rnw | 3 spsurvey-4.0.0/spsurvey/inst/doc/Finite_Design.pdf |binary spsurvey-4.0.0/spsurvey/inst/doc/Linear_Analysis.R | 1 spsurvey-4.0.0/spsurvey/inst/doc/Linear_Analysis.Rnw | 5 spsurvey-4.0.0/spsurvey/inst/doc/Linear_Analysis.pdf |binary spsurvey-4.0.0/spsurvey/inst/doc/Linear_Design.R | 1 spsurvey-4.0.0/spsurvey/inst/doc/Linear_Design.Rnw | 3 spsurvey-4.0.0/spsurvey/inst/doc/Linear_Design.pdf |binary spsurvey-4.0.0/spsurvey/inst/doc/README.pdf |binary spsurvey-4.0.0/spsurvey/inst/doc/Risk_Analysis.R | 1 spsurvey-4.0.0/spsurvey/inst/doc/Risk_Analysis.Rnw | 3 spsurvey-4.0.0/spsurvey/inst/doc/Risk_Analysis.pdf |binary spsurvey-4.0.0/spsurvey/inst/doc/UserGuide.pdf |binary spsurvey-4.0.0/spsurvey/man/FL_lakes.Rd | 47 spsurvey-4.0.0/spsurvey/man/IN_streams.Rd | 49 - spsurvey-4.0.0/spsurvey/man/Luck_Ash_streams.Rd | 35 spsurvey-4.0.0/spsurvey/man/NE_lakes.Rd | 37 spsurvey-4.0.0/spsurvey/man/NLA_2007.Rd | 64 - spsurvey-4.0.0/spsurvey/man/NRSA_2009.Rd | 63 - spsurvey-4.0.0/spsurvey/man/SC_estuaries.Rd | 45 spsurvey-4.0.0/spsurvey/man/SpatialDesign-class.Rd | 158 ++- spsurvey-4.0.0/spsurvey/man/UT_ecoregions.Rd | 34 spsurvey-4.0.0/spsurvey/man/adjwgt.Rd | 50 - spsurvey-4.0.0/spsurvey/man/albersgeod.Rd | 50 - spsurvey-4.0.0/spsurvey/man/ash1.wgt.Rd | 63 - spsurvey-4.0.0/spsurvey/man/attrisk.analysis.Rd | 284 +++--- spsurvey-4.0.0/spsurvey/man/attrisk.est.Rd | 307 +++--- spsurvey-4.0.0/spsurvey/man/attrisk.var.Rd |only spsurvey-4.0.0/spsurvey/man/cat.analysis.Rd | 368 ++++--- spsurvey-4.0.0/spsurvey/man/category.est.Rd | 336 +++---- spsurvey-4.0.0/spsurvey/man/catvar.prop.Rd |only spsurvey-4.0.0/spsurvey/man/catvar.size.Rd |only spsurvey-4.0.0/spsurvey/man/cdf.decon.Rd | 412 ++++---- spsurvey-4.0.0/spsurvey/man/cdf.est.Rd | 381 ++++---- spsurvey-4.0.0/spsurvey/man/cdf.nresp.Rd |only spsurvey-4.0.0/spsurvey/man/cdf.plot.Rd | 161 +-- spsurvey-4.0.0/spsurvey/man/cdf.prop.Rd |only spsurvey-4.0.0/spsurvey/man/cdf.size.prop.Rd |only spsurvey-4.0.0/spsurvey/man/cdf.size.total.Rd |only spsurvey-4.0.0/spsurvey/man/cdf.test.Rd | 502 ++++++---- spsurvey-4.0.0/spsurvey/man/cdf.test.prop.Rd |only spsurvey-4.0.0/spsurvey/man/cdf.test.size.prop.Rd |only spsurvey-4.0.0/spsurvey/man/cdf.total.Rd |only spsurvey-4.0.0/spsurvey/man/cdfvar.prop.Rd |only spsurvey-4.0.0/spsurvey/man/cdfvar.size.prop.Rd |only spsurvey-4.0.0/spsurvey/man/cdfvar.size.total.Rd |only spsurvey-4.0.0/spsurvey/man/cdfvar.test.Rd |only spsurvey-4.0.0/spsurvey/man/cdfvar.total.Rd |only spsurvey-4.0.0/spsurvey/man/cell.wt.Rd |only spsurvey-4.0.0/spsurvey/man/change.analysis.Rd | 444 +++++---- spsurvey-4.0.0/spsurvey/man/change.est.Rd | 506 ++++++---- spsurvey-4.0.0/spsurvey/man/changevar.mean.Rd |only spsurvey-4.0.0/spsurvey/man/changevar.prop.Rd |only spsurvey-4.0.0/spsurvey/man/changevar.size.Rd |only spsurvey-4.0.0/spsurvey/man/cont.analysis.Rd | 427 +++++---- spsurvey-4.0.0/spsurvey/man/cont.cdfplot.Rd | 173 ++- spsurvey-4.0.0/spsurvey/man/cont.cdftest.Rd | 381 ++++---- spsurvey-4.0.0/spsurvey/man/cov.panel.dsgn.Rd |only spsurvey-4.0.0/spsurvey/man/dcdf.prop.Rd |only spsurvey-4.0.0/spsurvey/man/dcdf.size.prop.Rd |only spsurvey-4.0.0/spsurvey/man/dcdf.size.total.Rd |only spsurvey-4.0.0/spsurvey/man/dcdf.total.Rd |only spsurvey-4.0.0/spsurvey/man/dcdfvar.prop.Rd |only spsurvey-4.0.0/spsurvey/man/dcdfvar.size.prop.Rd |only spsurvey-4.0.0/spsurvey/man/dcdfvar.size.total.Rd |only spsurvey-4.0.0/spsurvey/man/dcdfvar.total.Rd |only spsurvey-4.0.0/spsurvey/man/decon_data.Rd | 41 spsurvey-4.0.0/spsurvey/man/dframe.check.Rd |only spsurvey-4.0.0/spsurvey/man/dsgnsum.Rd | 89 + spsurvey-4.0.0/spsurvey/man/examine.Rd | 65 - spsurvey-4.0.0/spsurvey/man/framesum.Rd | 185 ++- spsurvey-4.0.0/spsurvey/man/geodalbers.Rd | 50 - spsurvey-4.0.0/spsurvey/man/grts.Rd | 336 +++---- spsurvey-4.0.0/spsurvey/man/grtsarea.Rd | 96 +- spsurvey-4.0.0/spsurvey/man/grtslin.Rd | 87 + spsurvey-4.0.0/spsurvey/man/grtspts.Rd | 98 +- spsurvey-4.0.0/spsurvey/man/input.check.Rd |only spsurvey-4.0.0/spsurvey/man/input.format.Rd |only spsurvey-4.0.0/spsurvey/man/interp.axis.Rd |only spsurvey-4.0.0/spsurvey/man/interp.cdf.Rd |only spsurvey-4.0.0/spsurvey/man/irs.Rd | 278 +++-- spsurvey-4.0.0/spsurvey/man/irsarea.Rd | 54 - spsurvey-4.0.0/spsurvey/man/irslin.Rd | 41 spsurvey-4.0.0/spsurvey/man/irspts.Rd | 27 spsurvey-4.0.0/spsurvey/man/isotonic.Rd |only spsurvey-4.0.0/spsurvey/man/localmean.cov.Rd |only spsurvey-4.0.0/spsurvey/man/localmean.df.Rd |only spsurvey-4.0.0/spsurvey/man/localmean.var.Rd |only spsurvey-4.0.0/spsurvey/man/localmean.weight.Rd |only spsurvey-4.0.0/spsurvey/man/localmean.weight2.Rd |only spsurvey-4.0.0/spsurvey/man/marinus.Rd | 36 spsurvey-4.0.0/spsurvey/man/mdmarea.Rd |only spsurvey-4.0.0/spsurvey/man/mdmlin.Rd |only spsurvey-4.0.0/spsurvey/man/mdmpts.Rd |only spsurvey-4.0.0/spsurvey/man/panel_summary.Rd |only spsurvey-4.0.0/spsurvey/man/plot_powerpaneldesign.Rd |only spsurvey-4.0.0/spsurvey/man/power.dsgn.Rd |only spsurvey-4.0.0/spsurvey/man/read.dbf.Rd | 57 - spsurvey-4.0.0/spsurvey/man/read.sas.Rd | 73 - spsurvey-4.0.0/spsurvey/man/read.shape.Rd | 71 - spsurvey-4.0.0/spsurvey/man/relrisk.analysis.Rd | 292 +++--- spsurvey-4.0.0/spsurvey/man/relrisk.est.Rd | 339 +++---- spsurvey-4.0.0/spsurvey/man/relrisk.var.Rd |only spsurvey-4.0.0/spsurvey/man/revisit_bibd.Rd |only spsurvey-4.0.0/spsurvey/man/revisit_dsgn.Rd |only spsurvey-4.0.0/spsurvey/man/revisit_rand.Rd |only spsurvey-4.0.0/spsurvey/man/sbcframe.Rd |only spsurvey-4.0.0/spsurvey/man/sbcsamp.Rd |only spsurvey-4.0.0/spsurvey/man/selectframe.Rd |only spsurvey-4.0.0/spsurvey/man/selectpts.Rd |only spsurvey-4.0.0/spsurvey/man/selectrecordID.Rd |only spsurvey-4.0.0/spsurvey/man/shape2spList.Rd |only spsurvey-4.0.0/spsurvey/man/simex.Rd |only spsurvey-4.0.0/spsurvey/man/sorted.Rd |only spsurvey-4.0.0/spsurvey/man/sp2shape.Rd | 56 - spsurvey-4.0.0/spsurvey/man/spbalance.Rd | 150 +-- spsurvey-4.0.0/spsurvey/man/spsurvey-package.Rd |only spsurvey-4.0.0/spsurvey/man/spsurvey.analysis.Rd | 556 ++++++----- spsurvey-4.0.0/spsurvey/man/total.est.Rd | 343 +++---- spsurvey-4.0.0/spsurvey/man/total.var.Rd |only spsurvey-4.0.0/spsurvey/man/uniqueID.Rd | 26 spsurvey-4.0.0/spsurvey/man/vecprint.Rd |only spsurvey-4.0.0/spsurvey/man/warnprnt.Rd |only spsurvey-4.0.0/spsurvey/man/wnas.Rd |only spsurvey-4.0.0/spsurvey/man/write.dbf.Rd | 40 spsurvey-4.0.0/spsurvey/man/write.object.Rd | 120 +- spsurvey-4.0.0/spsurvey/src/dbfFileParser.c | 17 spsurvey-4.0.0/spsurvey/vignettes/Area_Analysis.Rnw | 12 spsurvey-4.0.0/spsurvey/vignettes/Area_Design.Rnw | 5 spsurvey-4.0.0/spsurvey/vignettes/CDF_Analysis.Rnw | 9 spsurvey-4.0.0/spsurvey/vignettes/CDF_Deconvolution.Rnw | 3 spsurvey-4.0.0/spsurvey/vignettes/Change_Analysis.Rnw | 5 spsurvey-4.0.0/spsurvey/vignettes/Finite_Analysis.Rnw | 5 spsurvey-4.0.0/spsurvey/vignettes/Finite_Design.Rnw | 3 spsurvey-4.0.0/spsurvey/vignettes/Linear_Analysis.Rnw | 5 spsurvey-4.0.0/spsurvey/vignettes/Linear_Design.Rnw | 3 spsurvey-4.0.0/spsurvey/vignettes/Risk_Analysis.Rnw | 3 spsurvey-4.0.0/spsurvey/vignettes/spsurvey.bib | 20 294 files changed, 15546 insertions(+), 12001 deletions(-)
Title: Robust Asymptotic Statistics
Description: Base S4-classes and functions for robust asymptotic statistics.
Author: Matthias Kohl [cre, cph, aut],
Peter Ruckdeschel [aut, cph],
Mykhailo Pupashenko [ctb] (contributed wrapper functions for diagnostic
plots),
Gerald Kroisandt [ctb] (contributed testing routines),
R Core Team [ctb, cph] (for source file 'format.perc')
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>
Diff between RobAStBase versions 1.1.0 dated 2018-08-03 and 1.2.0 dated 2019-04-05
DESCRIPTION | 32 - MD5 | 109 ++--- NAMESPACE | 11 R/AllClass.R | 16 R/AllGeneric.R | 7 R/AllPlot.R | 9 R/AllShow.R | 20 R/CheckMakeIC.R |only R/ContIC.R | 3 R/HampIC.R | 1 R/IC.R | 148 ------- R/TotalVarIC.R | 1 R/bALEstimate.R | 29 + R/comparePlot.R | 9 R/ddPlot_utils.R | 20 R/generateICfct.R | 102 +++- R/getBiasIC.R | 4 R/getPIC.R |only R/getRiskIC.R | 81 ++- R/getboundedIC.R | 52 ++ R/infoPlot.R | 14 R/internalGridHelpers.R | 28 - R/kStepEstimate.R | 2 R/kStepEstimator.R | 251 +++++++++--- R/move2bckRefParam.R | 2 R/oneStepEstimator.R | 6 R/optIC.R | 10 R/outlyingPlot.R | 16 R/plotWrapper.R | 328 +++++++++++++-- R/qqplot.R | 7 R/returnlevelplot.R | 2 inst/NEWS | 114 +++++ inst/chkTimeCode |only man/0RobAStBase-package.Rd | 115 ++--- man/ALEstimate-class.Rd | 83 +++- man/ContIC-class.Rd | 14 man/ContIC.Rd | 7 man/HampIC-class.Rd | 13 man/IC-class.Rd | 19 man/IC.Rd | 14 man/OptionalInfluenceCurve-Class.Rd | 5 man/TotalVarIC-class.Rd | 15 man/TotalVarIC.Rd | 7 man/checkIC.Rd | 15 man/comparePlot.Rd | 740 ++++++++++++++++++------------------ man/getBiasIC.Rd | 4 man/getBoundedIC.Rd | 6 man/getRiskIC.Rd | 29 - man/internal_GridHelpers.Rd | 127 +++--- man/internals.Rd | 17 man/kStepEstimate-class.Rd | 8 man/kStepEstimator.Rd | 25 + man/makeIC-methods.Rd | 53 +- man/oneStepEstimator.Rd | 11 man/optIC.Rd | 5 man/outlyingPlotIC.Rd | 11 man/plot-methods.Rd | 2 57 files changed, 1774 insertions(+), 1005 deletions(-)
Title: Dynamic Extensions for Network Objects
Description: Simple interface routines to facilitate the handling of network objects with complex intertemporal data. This is a part of the "statnet" suite of packages for network analysis.
Author: Carter T. Butts [aut],
Ayn Leslie-Cook [aut],
Pavel N. Krivitsky [aut],
Skye Bender-deMoll [aut, cre],
Zack Almquist [ctb],
David R. Hunter [ctb],
Li Wang [ctb],
Kirk Li [ctb],
Steven M. Goodreau [ctb],
Jeffrey Horner [ctb],
Martina Morris [ctb]
Maintainer: Skye Bender-deMoll <skyebend@uw.edu>
Diff between networkDynamic versions 0.9.0 dated 2016-01-14 and 0.10.0 dated 2019-04-05
ChangeLog | 5 +++++ DESCRIPTION | 11 ++++++----- MD5 | 30 ++++++++++++++++-------------- NAMESPACE | 4 ++++ R/access.R | 10 +++++----- R/as.networkDynamic.siena.R |only R/tea_utils.R | 8 ++++---- README.md |only build/vignette.rds |binary inst/doc/networkDynamic.pdf |binary man/activate.Rd | 4 ++-- man/activity.attribute.Rd | 4 ++-- man/delete.activity.Rd | 4 ++-- man/network.dynamic.check.Rd | 4 ++-- man/network.extensions.Rd | 25 +++++++++++++++---------- man/read.son.Rd | 4 ++-- tests/converter_tests.R | 2 +- 17 files changed, 66 insertions(+), 49 deletions(-)
More information about networkDynamic at CRAN
Permanent link
Title: Clustering of Micro Panel Data
Description: Two-step feature-based clustering method designed for micro panel (longitudinal) data with the artificial panel data generator. See Sobisek, Stachova, Fojtik (2018) <arXiv:1807.05926>.
Author: Jan Fojtik [aut],
Anna Grishko [aut, cre],
Lukas Sobisek [aut, cph, rev]
Maintainer: Anna Grishko <anja.grishko@gmail.com>
Diff between CluMP versions 0.7 dated 2019-01-11 and 0.7.1 dated 2019-04-05
DESCRIPTION | 18 +++++------ MD5 | 25 ++++++++------- NEWS.md |only R/Generate_Panel.R | 5 ++- R/OptiNum.R | 6 +++ R/PanelPlot.R | 36 ++++++++++++---------- R/clump.R | 11 +++--- R/clump_profiles.R | 79 +++++++++++++++++++++++++------------------------- R/clump_view.R | 47 ++++++++++++++--------------- man/CluMP_profiles.Rd | 1 man/CluMP_view.Rd | 1 man/GeneratePanel.Rd | 3 + man/OptiNum.Rd | 1 man/PanelPlot.Rd | 7 ++-- 14 files changed, 128 insertions(+), 112 deletions(-)
Title: Spatial Objects of the Czech Republic
Description: Administrative regions, rivers and water bodies of the Czech Republic.
Author: Jindra Lacko
Maintainer: Jindra Lacko <jindra.lacko@gmail.com>
Diff between RCzechia versions 1.3.3 dated 2019-03-06 and 1.4.0 dated 2019-04-05
DESCRIPTION | 10 +- MD5 | 50 ++++++----- NAMESPACE | 2 NEWS.md | 4 R/RCzechia.R | 22 ++++- R/chr_uzemi.R | 2 R/geocode.R |only R/kraje.R | 2 R/obce_polygony.R | 3 R/okresy.R | 3 R/republika.R | 3 R/revgeo.R |only README.md | 6 + build/vignette.rds |binary inst/doc/vignette.R | 84 +++++++++++++------ inst/doc/vignette.Rmd | 113 ++++++++++++++++++-------- inst/doc/vignette.html | 136 +++++++++++++++++++++----------- man/RCzechia-package.Rd | 22 ++++- man/chr_uzemi.Rd | 2 man/geocode.Rd |only man/kraje.Rd | 2 man/obce_polygony.Rd | 3 man/okresy.Rd | 3 man/republika.Rd | 3 man/revgeo.Rd |only tests/testthat/test-1-data-structures.R | 36 ++++---- tests/testthat/test-2-code.R | 84 ++++++++++++++++++- vignettes/vignette.Rmd | 113 ++++++++++++++++++-------- 28 files changed, 490 insertions(+), 218 deletions(-)
Title: "Finding Groups in Data": Cluster Analysis Extended Rousseeuw et
al.
Description: Methods for Cluster analysis. Much extended the original from
Peter Rousseeuw, Anja Struyf and Mia Hubert,
based on Kaufman and Rousseeuw (1990) "Finding Groups in Data".
Author: Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>),
Peter Rousseeuw [aut] (Fortran original,
<https://orcid.org/0000-0002-3807-5353>),
Anja Struyf [aut] (S original),
Mia Hubert [aut] (S original, <https://orcid.org/0000-0001-6398-4850>),
Kurt Hornik [trl, ctb] (port to R; maintenance(1999-2000),
<https://orcid.org/0000-0003-4198-9911>),
Matthias Studer [ctb],
Pierre Roudier [ctb],
Juan Gonzalez [ctb],
Kamil Kozlowski [ctb],
Erich Schubert [ctb] (fastpam options for pam(),
<https://orcid.org/0000-0001-9143-4880>)
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between cluster versions 2.0.7-1 dated 2018-04-09 and 2.0.8 dated 2019-04-05
DESCRIPTION | 40 +++-- MD5 | 55 +++---- build |only inst/NEWS.Rd | 18 ++ inst/po/de/LC_MESSAGES/R-cluster.mo |binary inst/po/de/LC_MESSAGES/cluster.mo |binary inst/po/en@quot/LC_MESSAGES/R-cluster.mo |binary inst/po/en@quot/LC_MESSAGES/cluster.mo |binary inst/po/ko/LC_MESSAGES/cluster.mo |binary man/agnes.Rd | 2 man/clusGap.Rd | 13 + man/pam.Rd | 32 +++- man/xclara.Rd | 2 po/R-cluster.pot | 4 po/R-de.po | 20 +- po/cluster.pot | 6 po/de.po | 4 po/ko.po | 4 src/fanny.c | 4 src/pam.c | 237 ++++++++++++++++++++++++++++++ tests/clara-NAs.R | 1 tests/clara-NAs.Rout.save | 5 tests/clara.R | 1 tests/clara.Rout.save | 11 - tests/diana-boots.R | 1 tests/mona.R | 8 - tests/mona.Rout.save | 144 +++++++++--------- tests/pam.R | 57 ++++++- tests/pam.Rout.save | 241 ++++++++++++++++++++++++++++--- 29 files changed, 719 insertions(+), 191 deletions(-)
Title: Statistical Functions for the Delaporte Distribution
Description: Provides probability mass, distribution, quantile, random-variate generation, and method-of-moments parameter-estimation functions for the Delaporte distribution. The Delaporte is a discrete probability distribution which can be considered the convolution of a negative binomial distribution with a Poisson distribution. Alternatively, it can be considered a counting distribution with both Poisson and negative binomial components. It has been studied in actuarial science as a frequency distribution which has more variability than the Poisson, but less than the negative binomial.
Author: Avraham Adler [aut, cph, cre] (<https://orcid.org/0000-0002-3039-0703>)
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between Delaporte versions 7.0.0 dated 2019-02-12 and 7.0.1 dated 2019-04-05
DESCRIPTION | 8 ++++---- MD5 | 9 ++++++--- build/partial.rdb |binary src/Makevars | 8 +++----- src/delaporte.mod |only src/lgam.mod |only src/utils.mod |only 7 files changed, 13 insertions(+), 12 deletions(-)
Title: Dynamic Hazard Models using State Space Models
Description: Contains functions that lets you fit dynamic hazard models using
state space models. The first implemented model is described in Fahrmeir
(1992) <doi:10.1080/01621459.1992.10475232> and Fahrmeir (1994)
<doi:10.1093/biomet/81.2.317>. Extensions hereof are available where the
Extended Kalman filter is replaced by an unscented Kalman filter and other
options including particle filters. The implemented particle filters support
more general state space models.
Author: Benjamin Christoffersen [cre, aut],
Alan Miller [cph],
Anthony Williams [cph],
Boost developers [cph],
R-core [cph]
Maintainer: Benjamin Christoffersen <boennecd@gmail.com>
Diff between dynamichazard versions 0.6.4 dated 2019-03-11 and 0.6.5 dated 2019-04-05
DESCRIPTION | 6 +-- MD5 | 36 ++++++++++----------- R/RcppExports.R | 4 +- build/vignette.rds |binary inst/doc/Bootstrap_illustration.pdf |binary inst/doc/Comparing_methods_for_logistic_models.pdf |binary inst/doc/Diagnostics.pdf |binary inst/doc/Particle_filtering.pdf |binary inst/doc/ddhazard.pdf |binary src/BLAS_LAPACK/R_BLAS_LAPACK.cpp | 2 - src/BLAS_LAPACK/arma_BLAS_LAPACK.cpp | 7 +--- src/PF/covarmat.cpp | 14 ++++---- src/PF/covarmat.h | 6 ++- src/PF/dists.cpp | 27 +++++++++++---- src/RcppExports.cpp | 12 +++---- src/arma_BLAS_LAPACK.h | 4 +- src/ddhazard/SMA_solver.cpp | 6 ++- src/for_tests.cpp | 6 ++- tests/testthat/test_LAPACK_BLAS.R | 4 -- 19 files changed, 73 insertions(+), 61 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-02-17 1.1-3
2013-04-18 1.1-2
2012-06-20 1.1-1
2011-02-14 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-25 0.2.5.7
2019-03-22 0.2.5.6
2018-09-01 0.2.5.2
Title: Infrastructure for Running, Cycling and Swimming Data from
GPS-Enabled Tracking Devices
Description: Provides infrastructure for handling running, cycling and swimming data from GPS-enabled tracking devices within R. The package provides methods to extract, clean and organise workout and competition data into session-based and unit-aware data objects of class 'trackeRdata' (S3 class). The information can then be visualised, summarised, and analysed through flexible and extensible methods. Frick and Kosmidis (2017) <doi: 10.18637/jss.v082.i07>, which is updated and maintained as one of the vignettes, provides detailed descriptions of the package and its methods, and real-data demonstrations of the package functionality.
Author: Ioannis Kosmidis [aut, cre] (<https://orcid.org/0000-0003-1556-0302>),
Hannah Frick [aut] (<https://orcid.org/0000-0002-6049-5258>),
Robin Hornak [aut]
Maintainer: Ioannis Kosmidis <ioannis.kosmidis@warwick.ac.uk>
Diff between trackeR versions 1.4.1 dated 2019-03-24 and 1.5.0 dated 2019-04-05
DESCRIPTION | 6 ++--- MD5 | 47 ++++++++++++++++++++------------------- NAMESPACE | 2 + NEWS.md | 12 ++++++++++ R/cleaning.R | 2 - R/helpers.R | 34 +++++++++++++++++++++++++++- R/reading.R | 8 +++++- R/trackeR.R | 2 - R/trackeRdata.R | 26 ++++++++++++++++++++- R/trackeRdata_plot.R | 27 +++++++++++++++------- R/trackeRdata_summary.R | 49 +++++++++++++++++++++++++++++------------ R/trackeRdata_zones.R | 21 +++++++++++++---- data/run.rda |binary data/runs.rda |binary inst/doc/TourDetrackeR.html | 25 ++++++++++---------- inst/doc/trackeR.pdf |binary man/GC2trackeRdata.Rd | 2 - man/get_elevation_gain.Rd |only man/plot.trackeRdata.Rd | 9 ++++++- man/plot.trackeRdataSummary.Rd | 2 - man/read_container.Rd | 20 ++++++++++------ man/read_directory.Rd | 2 - man/summary.trackeRdata.Rd | 2 - man/trackeRdata.Rd | 19 ++++++++++++--- man/zones.Rd | 5 +--- 25 files changed, 232 insertions(+), 90 deletions(-)
Title: Teaching Hydrological Modelling with the GR Rainfall-Runoff
Models ('Shiny' Interface Included)
Description: Add-on package to the 'airGR' package that simplifies its use and is aimed at being used for teaching hydrology. The package provides 1) three functions that allow to complete very simply a hydrological modelling exercise 2) plotting functions to help students to explore observed data and to interpret the results of calibration and simulation of the GR ('Génie rural') models 3) a 'Shiny' graphical interface that allows for displaying the impact of model parameters on hydrographs and models internal variables.
Author: Olivier Delaigue [aut, cre] (<https://orcid.org/0000-0002-7668-8468>),
Laurent Coron [aut] (<https://orcid.org/0000-0002-1503-6204>),
Pierre Brigode [aut] (<https://orcid.org/0000-0001-8257-0741>),
Guillaume Thirel [ctb] (<https://orcid.org/0000-0002-1444-1830>)
Maintainer: Olivier Delaigue <airGR@irstea.fr>
Diff between airGRteaching versions 0.2.3.2 dated 2018-08-08 and 0.2.6.14 dated 2019-04-05
airGRteaching-0.2.3.2/airGRteaching/inst/plotters |only airGRteaching-0.2.3.2/airGRteaching/vignettes/fig |only airGRteaching-0.2.6.14/airGRteaching/DESCRIPTION | 31 airGRteaching-0.2.6.14/airGRteaching/MD5 | 72 - airGRteaching-0.2.6.14/airGRteaching/NAMESPACE | 4 airGRteaching-0.2.6.14/airGRteaching/NEWS | 384 ++++++---- airGRteaching-0.2.6.14/airGRteaching/R/CalGR.R | 2 airGRteaching-0.2.6.14/airGRteaching/R/ShinyGR.R | 5 airGRteaching-0.2.6.14/airGRteaching/R/SimGR.R | 4 airGRteaching-0.2.6.14/airGRteaching/R/Utils.R | 5 airGRteaching-0.2.6.14/airGRteaching/R/plot.CalGR.R | 4 airGRteaching-0.2.6.14/airGRteaching/R/plot.PrepGR.R | 2 airGRteaching-0.2.6.14/airGRteaching/build/vignette.rds |binary airGRteaching-0.2.6.14/airGRteaching/inst/CITATION | 33 airGRteaching-0.2.6.14/airGRteaching/inst/ShinyGR/server.R | 136 ++- airGRteaching-0.2.6.14/airGRteaching/inst/ShinyGR/www/fig/logo_irstea_hydro_square.svg | 214 ++--- airGRteaching-0.2.6.14/airGRteaching/inst/doc/get_started.R | 2 airGRteaching-0.2.6.14/airGRteaching/inst/doc/get_started.html | 51 - airGRteaching-0.2.6.14/airGRteaching/inst/doc/get_started.rmd | 6 airGRteaching-0.2.6.14/airGRteaching/man/CalGR.Rd | 4 airGRteaching-0.2.6.14/airGRteaching/man/PrepGR.Rd | 4 airGRteaching-0.2.6.14/airGRteaching/man/ShinyGR.Rd | 6 airGRteaching-0.2.6.14/airGRteaching/man/SimGR.Rd | 4 airGRteaching-0.2.6.14/airGRteaching/man/dyplot.default.Rd | 4 airGRteaching-0.2.6.14/airGRteaching/man/plot.CalGR.Rd | 4 airGRteaching-0.2.6.14/airGRteaching/man/plot.PrepGR.Rd | 4 airGRteaching-0.2.6.14/airGRteaching/man/plot.SimGR.Rd | 4 airGRteaching-0.2.6.14/airGRteaching/vignettes/get_started.rmd | 6 28 files changed, 597 insertions(+), 398 deletions(-)