Title: The Essential Histogram
Description: Provide an optimal histogram, in the sense of probability density estimation and features detection, by means of multiscale variational inference. In other words, the resulting histogram servers as an optimal density estimator, and meanwhile recovers the features, such as increases or modes, with both false positive and false negative controls. Moreover, it provides a parsimonious representation in terms of the number of blocks, which simplifies data interpretation. The only assumption for the method is that data points are independent and identically distributed, so it applies to fairly general situations, including continuous distributions, discrete distributions, and mixtures of both. For details see Li, Munk, Sieling and Walther (2016) <arXiv:1612.07216>.
Author: Housen Li [aut, cre],
Hannes Sieling [aut]
Maintainer: Housen Li <housen.li@outlook.com>
Diff between essHist versions 1.2.0 dated 2019-03-10 and 1.2.1 dated 2019-04-08
essHist-1.2.0/essHist/R/main.R |only essHist-1.2.1/essHist/ChangeLog |only essHist-1.2.1/essHist/DESCRIPTION | 13 essHist-1.2.1/essHist/MD5 | 44 +- essHist-1.2.1/essHist/NAMESPACE | 2 essHist-1.2.1/essHist/R/RcppExports.R | 8 essHist-1.2.1/essHist/R/checkHistogram.R | 105 ++++-- essHist-1.2.1/essHist/R/essHistogram.R |only essHist-1.2.1/essHist/R/intv.R |only essHist-1.2.1/essHist/R/mixtureDistribution.R | 114 +++++-- essHist-1.2.1/essHist/R/msQuantile.R |only essHist-1.2.1/essHist/build/partial.rdb |binary essHist-1.2.1/essHist/man/checkHistogram.Rd | 58 ++- essHist-1.2.1/essHist/man/essHist-package.Rd | 38 +- essHist-1.2.1/essHist/man/essHistogram.Rd | 49 +-- essHist-1.2.1/essHist/man/mixnorm.Rd | 34 +- essHist-1.2.1/essHist/man/msQuantile.Rd | 25 - essHist-1.2.1/essHist/src/RcppExports.cpp | 18 - essHist-1.2.1/essHist/src/bounds.cpp | 17 - essHist-1.2.1/essHist/src/multiscaleQuantile.cpp | 43 +- essHist-1.2.1/essHist/src/stepHistogram.cpp | 363 +++++++++++------------ essHist-1.2.1/essHist/src/stepHistogram.h | 15 essHist-1.2.1/essHist/tests |only 23 files changed, 535 insertions(+), 411 deletions(-)
Title: Tools to Handle Taxonomic Lists
Description: Some tools to work with taxonomic name lists.
Author: Vijay Barve [aut, cre] (<https://orcid.org/0000-0002-4852-2567>)
Maintainer: Vijay Barve <vijay.barve@gmail.com>
Diff between taxotools versions 0.0.11 dated 2019-03-05 and 0.0.20 dated 2019-04-08
DESCRIPTION | 8 ++--- MD5 | 64 ++++++++++++++++++++++++++++----------------- NAMESPACE | 9 ++++++ NEWS | 5 +++ R/BuildCSList.R | 5 ++- R/CheckScientificName.R | 8 ++++- R/ExpandSyn.R | 9 ++++-- R/GetITISSyn.R | 5 ++- R/GetWikiSyn.R | 11 ++++--- R/GuessTaxoLevel.R | 9 ++++-- R/ListITISSyn.R | 7 +++- R/MakeCanonical.R | 5 ++- R/MatchLists.R | 7 +++- R/cast_cs_field.R |only R/check_scientific.R |only R/expand_name.R |only R/get_itis_syn.R |only R/guess_taxo_level.R |only R/list_itis_syn.R |only R/list_wiki_syn.R |only R/make_canonical.R |only R/match_lists.R |only R/taxotools.R | 28 ++++++++++++++----- man/BuildCSList.Rd | 11 +++++++ man/CheckScientificName.Rd | 14 +++++++-- man/ExpandSyn.Rd | 13 +++++---- man/GetITISSyn.Rd | 8 ++++- man/GetWikiSyn.Rd | 13 +++++++-- man/GuessTaxoLevel.Rd | 13 +++++---- man/ListITISSyn.Rd | 10 ++++--- man/MakeCanonical.Rd | 11 +++++++ man/MatchLists.Rd | 13 +++++++-- man/cast_cs_field.Rd |only man/check_scientific.Rd |only man/expand_name.Rd |only man/get_itis_syn.Rd |only man/guess_taxo_level.Rd |only man/list_itis_syn.Rd |only man/list_wiki_syn.Rd |only man/make_canonical.Rd |only man/match_lists.Rd |only man/taxotools.Rd | 27 ++++++++++++++---- 42 files changed, 231 insertions(+), 82 deletions(-)
Title: Simulation of Fatigue Lifetimes
Description: Provides methods for simulation and analysis of a very general fatigue
lifetime model for (metal matrix) composite materials.
Author: Markus Baaske [aut, cre],
Felix Ballani [aut, ctb]
Maintainer: Markus Baaske <markus.baaske@uni-jena.de>
Diff between simLife versions 0.5.1 dated 2018-09-27 and 0.5.2 dated 2019-04-08
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- R/densify.R | 2 +- R/simLife-package.R | 6 +++--- R/simLife.R | 15 ++++++++------- data/AL2MC_15p_k10_F2p_CL.rda |binary data/AL2MC_15p_k10_F2p_S.rda |binary data/AL2MC_20p_k10_F2p_CL.rda |binary data/AL2MC_20p_k10_F2p_S.rda |binary man/simLife-package.Rd | 6 +++--- src/simLife.cpp | 17 ++++++++++++----- 11 files changed, 42 insertions(+), 34 deletions(-)
Title: Systematic Conservation Prioritization in R
Description: Conservation prioritization using integer
programming techniques. To solve large-scale problems, users
should install the 'gurobi' optimizer
(available from <http://www.gurobi.com/>).
Author: Jeffrey O Hanson [aut],
Richard Schuster [aut, cre],
Nina Morrell [aut],
Matthew Strimas-Mackey [aut],
Matthew E Watts [aut],
Peter Arcese [aut],
Joeseph Bennett [aut],
Hugh P Possingham [aut]
Maintainer: Richard Schuster <mail@richard-schuster.com>
Diff between prioritizr versions 4.0.2 dated 2018-06-28 and 4.0.3 dated 2019-04-08
DESCRIPTION | 51 MD5 | 610 +- NAMESPACE | 344 - R/ArrayParameter-proto.R | 288 - R/Collection-proto.R | 330 - R/ConservationModifier-proto.R | 362 - R/ConservationProblem-proto.R | 1190 ++--- R/Constraint-proto.R | 48 R/Decision-proto.R | 50 R/Id.R | 114 R/MiscParameter-proto.R | 208 R/Objective-proto.R | 44 R/OptimizationProblem-methods.R | 622 +- R/OptimizationProblem-proto.R | 402 - R/Parameter-proto.R | 152 R/Parameters-proto.R | 330 - R/Penalty-proto.R | 50 R/Portfolio-proto.R | 188 R/RcppExports.R | 342 - R/ScalarParameter-proto.R | 258 - R/Solver-proto.R | 187 R/Target-proto.R | 48 R/add_absolute_targets.R | 432 +- R/add_binary_decisions.R | 160 R/add_boundary_penalties.R | 656 +-- R/add_connectivity_penalties.R | 1053 ++-- R/add_contiguity_constraints.R | 609 +- R/add_cuts_portfolio.R | 254 - R/add_default_decisions.R | 34 R/add_default_objective.R | 18 R/add_default_portfolio.R | 32 R/add_default_solver.R | 78 R/add_default_targets.R | 18 R/add_feature_contiguity_constraints.R | 741 +-- R/add_feature_weights.R | 562 +- R/add_gurobi_solver.R | 334 - R/add_locked_in_constraints.R | 670 +-- R/add_locked_out_constraints.R | 568 +- R/add_loglinear_targets.R | 306 - R/add_lpsymphony_solver.R | 244 - R/add_mandatory_allocation_constraints.R |only R/add_manual_locked_constraints.R | 492 +- R/add_manual_targets.R | 634 +- R/add_max_cover_objective.R | 366 - R/add_max_features_objective.R | 314 - R/add_max_phylo_objective.R | 534 +- R/add_max_utility_objective.R | 292 - R/add_min_set_objective.R | 216 - R/add_neighbor_contraints.R | 697 +-- R/add_pool_portfolio.R | 314 - R/add_proportion_decisions.R | 144 R/add_relative_targets.R | 332 - R/add_rsymphony_solver.R | 260 - R/add_semicontinuous_decisions.R | 168 R/add_shuffle_portfolio.R | 308 - R/binary_stack.R | 100 R/boundary_matrix.R | 350 - R/branch_matrix.R | 112 R/category_layer.R | 102 R/category_vector.R | 122 R/compile.R | 264 - R/connected_matrix.R | 360 - R/connectivity_matrix.R | 319 - R/constraints.R | 183 R/data.R | 386 - R/decisions.R | 160 R/deprecated.R | 72 R/fast_extract.R | 332 - R/feature_abundances.R | 324 - R/feature_names.R | 134 R/feature_representation.R | 818 +-- R/internal.R | 599 +- R/intersecting_units.R | 341 - R/loglinear_interpolation.R | 112 R/magrittr-operators.R | 152 R/marxan_boundary_data_to_matrix.R | 312 - R/marxan_problem.R | 722 +-- R/misc.R | 84 R/new_optimization_problem.R | 42 R/number_of_features.R | 152 R/number_of_planning_units.R | 116 R/number_of_total_units.R | 128 R/number_of_zones.R | 154 R/objectives.R | 160 R/package.R | 168 R/parallel.R | 368 - R/parameters.R | 996 ++-- R/penalties.R | 140 R/portfolios.R | 144 R/pproto.R | 150 R/predefined_optimization_problem.R | 198 R/print.R | 216 - R/problem.R | 1659 +++---- R/rij_matrix.R | 263 - R/run_calculations.R | 164 R/show.R | 144 R/simulate.R | 264 - R/solve.R | 636 +- R/solvers.R | 212 R/targets.R | 150 R/tbl_df.R | 157 R/waiver.R | 62 R/zone_names.R | 140 R/zones.R | 382 - R/zzz.R | 12 README.md | 730 +-- build/vignette.rds |binary data/sim_features.rda |binary data/sim_features_zones.rda |binary data/sim_locked_in_raster.rda |binary data/sim_locked_out_raster.rda |binary data/sim_phylogeny.rda |binary data/sim_pu_lines.rda |binary data/sim_pu_points.rda |binary data/sim_pu_polygons.rda |binary data/sim_pu_raster.rda |binary data/sim_pu_zones_polygons.rda |binary data/sim_pu_zones_stack.rda |binary inst/doc/gurobi_installation.Rmd | 382 - inst/doc/gurobi_installation.html | 791 +-- inst/doc/prioritizr.Rmd | 1428 +++--- inst/doc/prioritizr.html | 2790 ++++++------- inst/doc/publication_record.Rmd | 50 inst/doc/publication_record.html | 318 - inst/doc/saltspring.Rmd | 400 - inst/doc/saltspring.html | 793 +-- inst/doc/tasmania.Rmd | 454 +- inst/doc/tasmania.html | 1109 ++--- inst/doc/zones.Rmd | 614 +- inst/doc/zones.html | 1785 +++----- inst/extdata/input.dat | 110 inst/extdata/simulate_data.R | 320 - man/ArrayParameter-class.Rd | 200 man/Collection-class.Rd | 188 man/ConservationModifier-class.Rd | 256 - man/ConservationProblem-class.Rd | 578 +- man/Constraint-class.Rd | 32 man/Decision-class.Rd | 34 man/MiscParameter-class.Rd | 166 man/Objective-class.Rd | 26 man/OptimizationProblem-class.Rd | 248 - man/OptimizationProblem-methods.Rd | 316 - man/Parameter-class.Rd | 118 man/Parameters-class.Rd | 180 man/Penalty-class.Rd | 34 man/Portfolio-class.Rd | 132 man/ScalarParameter-class.Rd | 182 man/Solver-class.Rd | 134 man/Target-class.Rd | 32 man/add_absolute_targets.Rd | 312 - man/add_binary_decisions.Rd | 141 man/add_boundary_penalties.Rd | 484 +- man/add_connectivity_penalties.Rd | 817 +-- man/add_contiguity_constraints.Rd | 415 - man/add_cuts_portfolio.Rd | 171 man/add_default_decisions.Rd | 38 man/add_default_solver.Rd | 50 man/add_feature_contiguity_constraints.Rd | 443 +- man/add_feature_weights.Rd | 426 - man/add_gurobi_solver.Rd | 173 man/add_locked_in_constraints.Rd | 444 +- man/add_locked_out_constraints.Rd | 340 - man/add_loglinear_targets.Rd | 223 - man/add_lsymphony_solver.Rd | 166 man/add_mandatory_allocation_constraints.Rd |only man/add_manual_locked_constraints.Rd | 274 - man/add_manual_targets.Rd | 409 - man/add_max_cover_objective.Rd | 313 - man/add_max_features_objective.Rd | 255 - man/add_max_phylo_objective.Rd | 435 +- man/add_max_utility_objective.Rd | 239 - man/add_min_set_objective.Rd | 195 man/add_neighbor_constraints.Rd | 388 - man/add_pool_portfolio.Rd | 229 - man/add_proportion_decisions.Rd | 145 man/add_relative_targets.Rd | 306 - man/add_rsymphony_solver.Rd | 155 man/add_semicontinuous_decisions.Rd | 161 man/add_shuffle_portfolio.Rd | 165 man/array_parameters.Rd | 254 - man/as.Rd | 58 man/as.list.Rd | 38 man/binary_stack.Rd | 82 man/boundary_matrix.Rd | 194 man/branch_matrix.Rd | 90 man/category_layer.Rd | 88 man/category_vector.Rd | 94 man/compile.Rd | 117 man/connected_matrix.Rd | 226 - man/connectivity_matrix.Rd | 195 man/constraints.Rd | 187 man/decisions.Rd | 164 man/distribute_load.Rd | 142 man/fast_extract.Rd | 161 man/feature_abundances.Rd | 290 - man/feature_names.Rd | 82 man/feature_representation.Rd | 436 +- man/figures/README-unnamed-chunk-11-1.png |binary man/figures/README-unnamed-chunk-12-1.png |binary man/figures/README-unnamed-chunk-13-1.png |binary man/figures/README-unnamed-chunk-14-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary man/figures/README-unnamed-chunk-8-1.png |binary man/figures/README-unnamed-chunk-9-1.png |binary man/intersecting_units.Rd | 155 man/is.Rd | 42 man/is.parallel.Rd | 72 man/loglinear_interpolation.Rd | 92 man/marxan_boundary_data_to_matrix.Rd | 112 man/marxan_problem.Rd | 378 - man/matrix_parameters.Rd | 128 man/misc_parameter.Rd | 122 man/new_id.Rd | 70 man/new_optimization_problem.Rd | 48 man/new_waiver.Rd | 64 man/number_of_features.Rd | 91 man/number_of_planning_units.Rd | 77 man/number_of_total_units.Rd | 100 man/number_of_zones.Rd | 95 man/objectives.Rd | 164 man/parallel.Rd | 100 man/parameters.Rd | 66 man/penalties.Rd | 144 man/pipe.Rd | 62 man/portfolios.Rd | 148 man/pproto.Rd | 88 man/predefined_optimization_problem.Rd | 142 man/print.Rd | 110 man/prioritizr-deprecated.Rd | 64 man/prioritizr.Rd | 158 man/problem.Rd | 861 +--- man/rij_matrix.Rd | 146 man/run_calculations.Rd | 154 man/scalar_parameters.Rd | 230 - man/show.Rd | 82 man/sim_data.Rd | 348 - man/simulate_cost.Rd | 97 man/simulate_data.Rd | 94 man/simulate_species.Rd | 94 man/solve.Rd | 374 - man/solvers.Rd | 214 man/targets.Rd | 140 man/tee.Rd | 74 man/tibble-methods.Rd | 107 man/zone_names.Rd | 88 man/zones.Rd | 224 - src/RcppExports.cpp | 7 src/init.c | 4 src/rcpp_add_zones_constraints.cpp | 4 tests/testthat.R | 28 tests/testthat/test_Id.R | 26 tests/testthat/test_OptimizationProblem.R | 246 - tests/testthat/test_Waiver.R | 22 tests/testthat/test_add_absolute_targets.R | 452 +- tests/testthat/test_add_boundary_penalties.R | 784 +-- tests/testthat/test_add_connectivity_penalties.R | 592 +- tests/testthat/test_add_contiguity_constraints.R | 492 +- tests/testthat/test_add_cuts_portfolio.R | 414 - tests/testthat/test_add_feature_contiguity_constraints.R | 878 ++-- tests/testthat/test_add_feature_weights.R | 726 +-- tests/testthat/test_add_locked_in_constraints.R | 1116 ++--- tests/testthat/test_add_locked_out_constraints.R | 1108 ++--- tests/testthat/test_add_loglinear_targets.R | 196 tests/testthat/test_add_mandatory_allocation_constraints.R |only tests/testthat/test_add_manual_locked_constraints.R | 340 - tests/testthat/test_add_manual_targets.R | 360 - tests/testthat/test_add_max_cover_objective.R | 1048 ++-- tests/testthat/test_add_max_features_objective.R | 1210 ++--- tests/testthat/test_add_max_phylo_objective.R | 1530 +++---- tests/testthat/test_add_max_utility_objective.R | 1068 ++-- tests/testthat/test_add_min_set_objective.R | 626 +- tests/testthat/test_add_neighbor_constraints.R | 488 +- tests/testthat/test_add_pool_portfolio.R | 548 +- tests/testthat/test_add_relative_targets.R | 408 - tests/testthat/test_add_shuffle_portfolio.R | 538 +- tests/testthat/test_binary_stack.R | 66 tests/testthat/test_boundary_matrix.R | 360 - tests/testthat/test_branch_matrix.R | 68 tests/testthat/test_category_layer.R | 78 tests/testthat/test_category_vector.R | 58 tests/testthat/test_compile.R | 206 tests/testthat/test_connected_matrix.R | 200 tests/testthat/test_connectivity_matrix.R | 218 - tests/testthat/test_decisions.R | 446 +- tests/testthat/test_feature_abundances.R | 370 - tests/testthat/test_feature_representation.R | 702 +-- tests/testthat/test_internal.R |only tests/testthat/test_intersecting_units.R | 102 tests/testthat/test_marxan_problem.R | 506 +- tests/testthat/test_parallel.R | 80 tests/testthat/test_parameters.R | 852 ++- tests/testthat/test_pproto.R | 200 tests/testthat/test_problem.R | 1716 ++++--- tests/testthat/test_problem_negative.R | 1378 +++--- tests/testthat/test_rij_matrix.R | 228 - tests/testthat/test_simulate.R | 80 tests/testthat/test_solve.R | 560 +- tests/testthat/test_solvers.R | 210 tests/testthat/test_sp_to_polyset.R | 40 tests/testthat/test_zones.R | 78 vignettes/gurobi_installation.Rmd | 382 - vignettes/prioritizr.Rmd | 1428 +++--- vignettes/publication_record.Rmd | 50 vignettes/reference-style.csl | 402 - vignettes/references.bib | 634 +- vignettes/saltspring.Rmd | 400 - vignettes/tasmania.Rmd | 454 +- vignettes/zones.Rmd | 614 +- 308 files changed, 45943 insertions(+), 46736 deletions(-)
Title: Analysis and Presentation of Social Scientific Data
Description: This is a collection of tools that the author (Jacob) has written
for the purpose of more efficiently understanding and sharing the results of
(primarily) regression analyses. There are also a number of miscellaneous
functions for statistical and programming purposes. Just about everything
supports models from the survey package.
Author: Jacob A. Long [aut, cre] (<https://orcid.org/0000-0002-1582-6214>)
Maintainer: Jacob A. Long <long.1377@osu.edu>
Diff between jtools versions 2.0.0 dated 2019-02-08 and 2.0.1 dated 2019-04-08
DESCRIPTION | 19 MD5 | 97 - NAMESPACE | 11 NEWS.md | 510 ++++--- R/colors.R | 3 R/interactions_deps.R | 2 R/internal.R | 31 R/jable.R | 245 --- R/make_new_data.R | 16 R/make_predictions.R | 21 R/mer_utils.r | 125 + R/programming_helpers.R | 179 ++ R/reexports.R |only R/summ.R | 258 +-- R/summ_helpers.R | 121 - R/summ_rq.R | 34 R/svytools.R | 1722 +++++++++++++------------- R/zzz.R | 33 README.md | 124 + inst/CITATION | 2 inst/doc/effect_plot.Rmd | 6 inst/doc/effect_plot.html | 2215 ++++++++++++++++++++++----------- inst/doc/summ.Rmd | 6 inst/doc/summ.html | 2415 ++++++++++++++++++++++++------------- inst/doc/svycor.html | 15 man/figures/unnamed-chunk-10-1.png |only man/figures/unnamed-chunk-7-1.png |binary man/figures/unnamed-chunk-8-1.png |binary man/figures/unnamed-chunk-9-1.png |only man/get_robust_se.Rd | 6 man/interactions_deprecated.Rd | 2 man/jtools_colors.Rd | 3 man/make_predictions.Rd | 6 man/md_table.Rd | 22 man/predict_merMod.Rd |only man/reexports.Rd |only man/set_summ_defaults.Rd | 11 man/subsetters.Rd | 12 man/summ.glm.Rd | 39 man/summ.lm.Rd | 38 man/summ.merMod.Rd | 43 man/summ.rq.Rd | 20 man/summ.svyglm.Rd | 30 man/wrap_str.Rd | 37 tests/testthat/Rplots.pdf |binary tests/testthat/brmfit.rds |binary tests/testthat/test-effect-plot.R | 20 tests/testthat/test-jsumm.R | 5 tests/testthat/test-just-not.R | 74 - tests/testthat/test-quantreg.R | 2 vignettes/effect_plot.Rmd | 6 vignettes/summ.Rmd | 6 52 files changed, 5051 insertions(+), 3541 deletions(-)
Title: Fingertips Data for Public Health
Description: Fingertips (<http://fingertips.phe.org.uk/>) contains data for many indicators of public health in England. The underlying data is now more easily accessible by making use of the API.
Author: Sebastian Fox [aut, cre],
Julian Flowers [aut, ctb],
Simon Thelwall [ctb] (<https://orcid.org/0000-0002-0434-2724>),
Duncan Gormansway [ctb],
Carl Ganz [ctb],
David Whiting [ctb],
Crown Copyright 2018 [cph]
Maintainer: Sebastian Fox <sebastian.fox@phe.gov.uk>
Diff between fingertipsR versions 0.2.1 dated 2019-03-07 and 0.2.2 dated 2019-04-08
DESCRIPTION | 6 MD5 | 18 NEWS.md | 12 R/fingertips_data.R | 12 R/indicator_metadata.R | 2 build/vignette.rds |binary inst/doc/lifeExpectancy.html | 3208 ++++++++++++++++++++++++++++++++--- inst/doc/selectIndicatorsRedRed.html | 319 ++- tests/testthat/test-extract.R | 8 tests/testthat/test-metadata.R | 2 10 files changed, 3319 insertions(+), 268 deletions(-)
Title: Produce Charts that you See on the Fingertips Website
Description: Use Fingertips charts to recreate the visualisations
that are displayed on the Fingertips website (<http://fingertips.phe.org.uk/>).
Author: Sebastian Fox [aut, cre]
Maintainer: Sebastian Fox <sebastian.fox@phe.gov.uk>
Diff between fingertipscharts versions 0.0.4 dated 2019-02-07 and 0.0.5 dated 2019-04-08
DESCRIPTION | 6 MD5 | 68 - NEWS.md | 8 R/fingertipscharts.R | 3 R/quick_charts.R | 60 + R/spine_chart_utils.R | 30 build/vignette.rds |binary inst/doc/quick_charts.R | 13 inst/doc/quick_charts.Rmd | 13 inst/doc/quick_charts.html | 150 +-- man/area_profiles.Rd | 35 man/box_plots.Rd | 5 man/compare_indicators.Rd | 5 man/map.Rd | 7 man/spine_rescaler.Rd | 4 man/trends.Rd | 3 tests/figs/area-profiles-example/area-profiles-example.svg | 70 - tests/figs/area-profiles/differing-dps-area-profiles.svg |only tests/figs/box-plots-example/box-plot-example.svg | 224 ++--- tests/figs/compare-indicators-example/compare-indicators-example.svg | 314 +++---- tests/figs/map-example/map-example.svg | 382 ++++----- tests/figs/map/map-p1.svg |only tests/figs/map/map.svg | 382 ++++----- tests/figs/overview/overview-no-top-areas.svg | 406 +++++----- tests/figs/overview/overview-top-areas.svg | 406 +++++----- tests/figs/population-example/population-example.svg | 234 ++--- tests/figs/population/full-pop-pyramid.svg | 226 ++--- tests/figs/population/no-comparator-pop-pyramid.svg | 206 ++--- tests/figs/population/one-comparator-pop-pyramid.svg | 214 ++--- tests/figs/trends-example/trends-example.svg | 98 +- tests/figs/trends/with-fill-trends.svg | 184 ++-- tests/figs/trends/without-fill-trends.svg | 184 ++-- tests/testthat/test-area-profiles.R | 33 tests/testthat/test-examples.R | 20 tests/testthat/test-map.R | 9 vignettes/quick_charts.Rmd | 13 36 files changed, 2086 insertions(+), 1929 deletions(-)
More information about fingertipscharts at CRAN
Permanent link
Title: Fast Algorithms for Best Subset Selection
Description: Highly optimized toolkit for approximately solving L0-regularized learning problems (aka best subset selection).
The algorithms are based on coordinate descent and local combinatorial search.
For more details, check the paper by Hazimeh and Mazumder (2018) <arXiv:1803.01454>;
the link is provided in the URL field below.
Author: Hussein Hazimeh, Rahul Mazumder
Maintainer: Hussein Hazimeh <hazimeh@mit.edu>
Diff between L0Learn versions 1.0.8 dated 2018-10-28 and 1.1.0 dated 2019-04-08
ChangeLog |only DESCRIPTION | 8 +- MD5 | 21 +++---- R/cvfit.R | 2 R/fit.R | 2 build/vignette.rds |binary configure.ac | 12 ++-- inst/doc/L0Learn-vignette.R | 2 inst/doc/L0Learn-vignette.Rmd | 2 inst/doc/L0Learn-vignette.html | 118 ++++++++++++++++++++++++++++++++++++----- src/CrossValidation.cpp | 2 vignettes/L0Learn-vignette.Rmd | 2 12 files changed, 132 insertions(+), 39 deletions(-)
Title: Tools to Make Developing R Packages Easier
Description: Collection of package development tools.
Author: Hadley Wickham [aut],
Jim Hester [aut, cre],
Winston Chang [aut],
RStudio [cph],
R Core team [ctb] (Some namespace and vignette code extracted from base
R)
Maintainer: Jim Hester <james.hester@rstudio.com>
Diff between devtools versions 2.0.1 dated 2018-10-26 and 2.0.2 dated 2019-04-08
devtools-2.0.1/devtools/tests/testthat/helper-github.R |only devtools-2.0.1/devtools/tests/testthat/test-github-connections.R |only devtools-2.0.2/devtools/DESCRIPTION | 18 +- devtools-2.0.2/devtools/MD5 | 57 +++---- devtools-2.0.2/devtools/NAMESPACE | 2 devtools-2.0.2/devtools/NEWS.md | 15 + devtools-2.0.2/devtools/R/check-win.R | 2 devtools-2.0.2/devtools/R/check.R | 2 devtools-2.0.2/devtools/R/install.R | 6 devtools-2.0.2/devtools/R/package.R | 5 devtools-2.0.2/devtools/R/pkgbuild.R | 4 devtools-2.0.2/devtools/R/pkgload.R | 5 devtools-2.0.2/devtools/R/r-hub.R | 12 - devtools-2.0.2/devtools/R/release.R | 7 devtools-2.0.2/devtools/R/test.R | 12 + devtools-2.0.2/devtools/R/utils.R | 79 ---------- devtools-2.0.2/devtools/R/zzz.R | 4 devtools-2.0.2/devtools/README.md | 16 +- devtools-2.0.2/devtools/build/vignette.rds |binary devtools-2.0.2/devtools/inst/doc/dependencies.html | 33 +++- devtools-2.0.2/devtools/man/build_vignettes.Rd | 10 - devtools-2.0.2/devtools/man/check_rhub.Rd | 10 - devtools-2.0.2/devtools/man/check_win.Rd | 2 devtools-2.0.2/devtools/man/install.Rd | 10 - devtools-2.0.2/devtools/man/install_deps.Rd | 27 +-- devtools-2.0.2/devtools/man/load_all.Rd | 6 devtools-2.0.2/devtools/man/reexports.Rd | 3 devtools-2.0.2/devtools/tests/testthat/test-build-readme.R | 2 devtools-2.0.2/devtools/tests/testthat/test-test.R | 5 devtools-2.0.2/devtools/tests/testthat/test-vignettes.R | 4 devtools-2.0.2/devtools/tests/testthat/testTest/tests/testthat/test-envvar.R |only 31 files changed, 179 insertions(+), 179 deletions(-)
Title: Functions for Thermal Comfort Research
Description: Functions to calculate various common and less common thermal comfort indices, convert physical variables, and evaluate the performance of thermal comfort indices.
Author: Marcel Schweiker [aut, cre] and Sophia Mueller [aut] and Michael Kleber [ctr] and Boris Kingma [ctr] and Masanori Shukuya [ctr]
Maintainer: Marcel Schweiker <marcel.schweiker@kit.edu>
Diff between comf versions 0.1.8 dated 2019-01-06 and 0.1.9 dated 2019-04-08
DESCRIPTION | 8 +-- MD5 | 35 ++++++++------- NEWS | 9 +++ R/ComfortIndices.r | 38 +++++++++------- R/fct2Node.r | 4 - R/fctHelp.r | 98 +++++++++++++++++++++++++++++------------- R/fctMRT.R |only R/fctPMVPPD.r | 4 - R/fctSimpleMRT.r |only README.md | 2 inst/doc/R_packages-comf.ltx | 2 inst/doc/R_packages-comf.pdf |binary man/calcCOEFF.Rd | 7 +-- man/calcComfInd.Rd | 10 ++-- man/calcMRT.Rd |only man/calcPMVadj.Rd | 16 ++++-- man/calcPTSadj.Rd | 16 ++++-- man/comf-package.Rd | 4 - man/createCond.Rd | 6 +- vignettes/R_packages-comf.ltx | 2 20 files changed, 165 insertions(+), 96 deletions(-)
Title: Machine Learning with AdaBoost on Decision Stumps
Description: Creates classifier for binary outcomes using Adaptive Boosting
(AdaBoost) algorithm on decision stumps with a fast C++ implementation.
For a description of AdaBoost, see Freund and Schapire (1997)
<doi:10.1006/jcss.1997.1504>. This type of classifier is nonlinear, but
easy to interpret and visualize. Feature vectors may be a combination of
continuous (numeric) and categorical (string, factor) elements. Methods
for classifier assessment, predictions, and cross-validation also included.
Author: Jadon Wagstaff [aut, cre]
Maintainer: Jadon Wagstaff <jadonw@gmail.com>
Diff between sboost versions 0.1.0 dated 2018-10-28 and 0.1.1 dated 2019-04-08
DESCRIPTION | 21 +++--- MD5 | 34 +++++----- NEWS.md | 12 +++ R/RcppExports.R | 4 - R/process_input.R | 35 +++++++++-- R/process_output.R | 46 ++++++++++---- R/sboost.R | 9 +- R/validate.R | 8 +- man/sboost.Rd | 5 + man/validate.Rd | 4 - src/RcppExports.cpp | 7 +- src/adaboost.cpp | 40 +++++++++++- src/init.c | 20 +++--- src/predict_assess.cpp | 6 - src/stump.cpp | 130 +++++++++++++++++++++++++++++++----------- src/stump.h | 8 +- tests/testthat/test_missing.R | 15 ++++ tests/testthat/test_sboost.R | 3 18 files changed, 291 insertions(+), 116 deletions(-)
Title: Tools for Parsing, Manipulating, and Graphing Taxonomic
Abundance Data
Description: A set of tools for parsing, manipulating, and graphing data
classified by a hierarchy (e.g. a taxonomy).
Author: Zachary Foster [aut, cre],
Niklaus Grunwald [ths],
Rob Gilmore [ctb]
Maintainer: Zachary Foster <zacharyfoster1989@gmail.com>
Diff between metacoder versions 0.3.1 dated 2019-01-04 and 0.3.2 dated 2019-04-08
DESCRIPTION | 11 ++++++----- MD5 | 36 ++++++++++++++++++------------------ NEWS.md | 5 +++++ R/calculations--internal.R | 9 ++++++++- R/calculations.R | 9 ++++++--- build/vignette.rds |binary inst/doc/introduction.html | 3 +++ man/calc_group_mean.Rd | 2 +- man/calc_group_median.Rd | 2 +- man/calc_group_rsd.Rd | 2 +- man/calc_group_stat.Rd | 2 +- man/calc_n_samples.Rd | 2 +- man/calc_obs_props.Rd | 2 +- man/calc_prop_samples.Rd | 2 +- man/calc_taxon_abund.Rd | 2 +- man/counts_to_presence.Rd | 2 +- man/do_calc_on_num_cols.Rd | 2 +- man/rarefy_obs.Rd | 2 +- man/zero_low_counts.Rd | 2 +- 19 files changed, 58 insertions(+), 39 deletions(-)
Title: Tools for Evolutionary Quantitative Genetics
Description: Provides functions for covariance matrix comparisons, estimation
of repeatabilities in measurements and matrices, and general evolutionary
quantitative genetics tools.
Author: Ana Paula Assis, Diogo Melo, Edgar Zanella, Fabio Machado, Guilherme
Garcia
Maintainer: Diogo Melo <diogro@usp.br>
Diff between evolqg versions 0.2-5 dated 2017-02-01 and 0.2-6 dated 2019-04-08
DESCRIPTION | 11 ++-- MD5 | 86 ++++++++++++++++---------------- NAMESPACE | 5 + R/CalcAVG.R | 24 ++++---- R/CalcEigenSd.R |only R/MatrixStatistics.R | 7 +- R/Normalize.R | 2 R/PhyloMantel.R | 9 ++- R/RandomCorr.R | 31 ++++++++++- R/RandomMatrix.R | 15 ++++- R/RcppExports.R | 6 +- R/SRD.R | 5 + R/TestModularity.R | 6 +- R/deltaZ_corr.R |only R/l_modularity.R | 4 + man/BootstrapRep.Rd | 3 - man/CalcAVG.Rd | 8 +- man/CalcEigenSd.Rd |only man/CalcR2CvCorrected.Rd | 4 - man/DeltaZCorr.Rd |only man/EigenTensorDecomposition.Rd | 8 +- man/KrzCor.Rd | 4 - man/LModularity.Rd | 4 + man/MINT.Rd | 5 - man/MantelModTest.Rd | 6 +- man/MatrixDistance.Rd | 4 - man/MonteCarloR2.Rd | 3 - man/MonteCarloRep.Rd | 4 - man/MonteCarloStat.Rd | 4 - man/Normalize.Rd | 3 - man/PCAsimilarity.Rd | 4 - man/RandomMatrix.Rd | 6 +- man/SingleComparisonMap.Rd | 3 - src/RcppExports.cpp | 27 +++++++++- src/fast_RS.cpp | 41 ++++----------- tests/testthat.R | 2 tests/testthat/iris.stats | 3 - tests/testthat/test.ExtendMatrix.r | 22 ++++---- tests/testthat/test.LModularity.r | 1 tests/testthat/test.MINT.r | 1 tests/testthat/test.MatrixComparisons.r | 20 +++++-- tests/testthat/test.MatrixDistances.r | 13 ++-- tests/testthat/test.MatrixStatistics.r | 1 tests/testthat/test.RSProjection.r | 2 tests/testthat/test.SRD.r | 2 tests/testthat/test.TestModularity.r | 28 +++++++--- 46 files changed, 281 insertions(+), 166 deletions(-)
Title: Calculating Concentration Risk under Solvency II
Description: Methods for determining spatial risk, in particular calculating the maximum value of insured fire risk policies of all buildings that are partly or fully located within circle of a radius of 200m.
Author: Martin Haringa
Maintainer: Martin Haringa <mtharinga@gmail.com>
Diff between spatialrisk versions 0.5.1 dated 2019-03-01 and 0.6.0 dated 2019-04-08
DESCRIPTION | 9 +++--- MD5 | 46 ++++++++++++++++++++++++++++------- NAMESPACE | 9 ++++++ NEWS.md | 5 +++ R/Groningen.R | 2 - R/insurance.R |only R/map_ggplot2.R |only R/map_tmap.R |only R/nl_gemeente.R |only R/nlchoropleth.R |only R/zzz.R | 2 - data/Groningen.rda |binary data/datalist | 10 +++++++ data/europe_countries.rda |only data/insurance.rda |only data/nl_corop.rda |only data/nl_gemeente.rda |only data/nl_postcode1.rda |only data/nl_postcode2.rda |only data/nl_postcode3.rda |only data/nl_postcode4.rda |only data/nl_provincie.rda |only data/world_countries.rda |only man/Groningen.Rd | 2 - man/choropleth_ggplot2.Rd |only man/choropleth_sf.Rd |only man/choropleth_tmap.Rd |only man/europe_countries.Rd |only man/insurance.Rd |only man/nl_corop.Rd |only man/nl_gemeente.Rd |only man/nl_postcode1.Rd |only man/nl_postcode2.Rd |only man/nl_postcode3.Rd |only man/nl_postcode4.Rd |only man/nl_provincie.Rd |only man/world_countries.Rd |only tests/testthat/test_pointsincircle.R | 7 ----- 38 files changed, 70 insertions(+), 22 deletions(-)
Title: Download and Aggregate High Frequency Trading Data from Bovespa
Description: Downloads and aggregates high frequency trading data for Brazilian instruments directly from Bovespa ftp site <ftp://ftp.bmf.com.br/MarketData/>.
Author: Marcelo Perlin [aut, cre],
Henrique Ramos [ctb]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Diff between GetHFData versions 1.6 dated 2018-10-10 and 1.7 dated 2019-04-08
DESCRIPTION | 10 +++---- MD5 | 14 +++++------ NEWS.md | 28 +++++++++++++--------- R/ghfd_get_ftp_contents.R | 15 ++++++++--- build/vignette.rds |binary inst/doc/ghfd-vignette-LOB.html | 33 ++++++++++++++++++++++--- inst/doc/ghfd-vignette-Orders.html | 33 ++++++++++++++++++++++--- inst/doc/ghfd-vignette-Trades.html | 47 ++++++++++++++++++++++++++++--------- 8 files changed, 134 insertions(+), 46 deletions(-)
Title: Interface to Drosophila Activity Monitor System Result Files
Description: Loads behavioural data from the widely used Drosophila Activity Monitor System (DAMS, TriKinetics) into the rethomics framework.
Author: Quentin Geissmann [aut, cre],
Hadley Wickham [aut]
Maintainer: Quentin Geissmann <qgeissmann@gmail.com>
Diff between damr versions 0.3.1 dated 2018-05-15 and 0.3.3 dated 2019-04-08
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ R/aaa.R | 4 +++- R/read-dam-file.R | 2 +- README.md | 4 ---- man/link_dam_metadata.Rd | 4 ++-- man/read_dam_file.Rd | 2 +- 7 files changed, 19 insertions(+), 21 deletions(-)
Title: Simulating Phylogenetic Trees
Description: Simulation methods for phylogenetic trees where (i) all tips are sampled at one time point or (ii) tips are sampled sequentially through time. (i) For sampling at one time point, simulations are performed under a constant rate birth-death process, conditioned on having a fixed number of final tips (sim.bd.taxa()), or a fixed age (sim.bd.age()), or a fixed age and number of tips (sim.bd.taxa.age()). When conditioning on the number of final tips, the method allows for shifts in rates and mass extinction events during the birth-death process (sim.rateshift.taxa()). The function sim.bd.age() (and sim.rateshift.taxa() without extinction) allow the speciation rate to change in a density-dependent way. The LTT plots of the simulations can be displayed using LTT.plot(), LTT.plot.gen() and LTT.average.root(). TreeSim further samples trees with n final tips from a set of trees generated by the common sampling algorithm stopping when a fixed number m>>n of tips is first reached (sim.gsa.taxa()). This latter method is appropriate for m-tip trees generated under a big class of models (details in the sim.gsa.taxa() man page). For incomplete phylogeny, the missing speciation events can be added through simulations (corsim()). (ii) sim.rateshifts.taxa() is generalized to sim.bdsky.stt() for serially sampled trees, where the trees are conditioned on either the number of sampled tips or the age. Furthermore, for a multitype-branching process with sequential sampling, trees on a fixed number of tips can be simulated using sim.bdtypes.stt.taxa(). This function further allows to simulate under epidemiological models with an exposed class. The function sim.genespeciestree() simulates coalescent gene trees within birth-death species trees, and sim.genetree() simulates coalescent gene trees.
Author: Tanja Stadler
Maintainer: Tanja Stadler <tanja.stadler@bsse.ethz.ch>
Diff between TreeSim versions 2.3 dated 2017-03-20 and 2.4 dated 2019-04-08
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- man/TreeSim-package.Rd | 4 ++-- man/sim.bd.age.Rd | 10 +++++----- 4 files changed, 14 insertions(+), 14 deletions(-)
Title: Optimally Robust Estimation for Extreme Value Distributions
Description: Optimally robust estimation for extreme value distributions using S4 classes and
methods (based on packages 'distr', 'distrEx', 'distrMod', 'RobAStBase', and
'ROptEst').
Author: Nataliya Horbenko [aut, cph],
Bernhard Spangl [ctb] (contributed smoothed grid values of the Lagrange
multipliers),
Sascha Desmettre [ctb] (contributed smoothed grid values of the
Lagrange multipliers),
Eugen Massini [ctb] (contributed an interactive smoothing routine for
smoothing the Lagrange multipliers and smoothed grid values of the
Lagrange multipliers),
Daria Pupashenko [ctb] (contributed MDE-estimation for GEV distribution
in the framework of her PhD thesis 2011--14),
Gerald Kroisandt [ctb] (contributed testing routines),
Matthias Kohl [aut, cph],
Peter Ruckdeschel [cre, aut, cph]
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between RobExtremes versions 1.1.0 dated 2018-08-03 and 1.2.0 dated 2019-04-08
DESCRIPTION | 49 +++++----- MD5 | 64 ++++++------- NAMESPACE | 9 + R/AllClass.R | 9 + R/AllShow.R | 2 R/Expectation.R | 137 +++++++++++----------------- R/GEV.R | 9 + R/GPareto.R | 7 + R/Gumbel.R | 3 R/Pareto.R | 4 R/asvarMedkMAD.R | 4 R/checkEstClassForParamFamiliyMethods.R | 40 ++++++++ R/getStartIC.R | 64 +++---------- R/getStartICPareto.R | 19 ++- R/gevgpddiag.R | 2 R/internal-getpsi.R | 21 ++-- R/makeIC.R | 2 R/startEstGEV.R | 9 + R/sysdata.rda |binary inst/NEWS | 40 +++++++- inst/scripts/RobFitsAtRealData.R | 68 ++++++------- man/0RobExtremes-package.Rd | 63 +----------- man/E.Rd | 31 ++++-- man/GEV-class.Rd | 4 man/GEVFamily.Rd | 7 + man/GEVFamilyMuUnknown.Rd | 7 + man/GPareto-class.Rd | 3 man/Gumbel-class.Rd | 5 + man/Pareto-class.Rd | 3 man/internal-interpolate.Rd | 8 - man/internal-methods.Rd | 43 +++++++- man/internalEstimatorReturnClasses-class.Rd | 29 +++++ tests |only 33 files changed, 440 insertions(+), 325 deletions(-)
Title: Robust Geostatistical Analysis of Spatial Data
Description: Provides functions for efficiently fitting linear models with
spatially correlated errors by robust and Gaussian (Restricted)
Maximum Likelihood and for computing robust and customary point
and block external-drift Kriging predictions, along with utility
functions for variogram modelling in ad hoc geostatistical analyses,
model building, model evaluation by cross-validation, (conditional)
simulation of Gaussian processes, unbiased back-transformation of
Kriging predictions of log-transformed data.
Author: Andreas Papritz [cre, aut],
Cornelia Schwierz [ctb]
Maintainer: Andreas Papritz <andreas.papritz@env.ethz.ch>
Diff between georob versions 0.3-8 dated 2019-03-29 and 0.3-9 dated 2019-04-08
ChangeLog | 9 ++ DESCRIPTION | 8 +- MD5 | 26 +++--- NAMESPACE | 1 NEWS | 3 R/georob.private.functions.R | 3 R/variogram.R | 140 ++++++++++++++++++++++++++++------- inst/doc/georob_vignette.R | 2 inst/doc/georob_vignette.Rnw | 3 inst/doc/georob_vignette.pdf |binary man/control.georob.Rd | 2 man/fit.variogram.model.Rd | 64 +++++++++++++--- vignettes/georob_vignette.Rnw | 3 vignettes/r_meuse_zinc_objects.RData |binary 14 files changed, 201 insertions(+), 63 deletions(-)
Title: Estimating and Mapping Disaggregated Indicators
Description: Functions that support estimating, assessing and mapping regional
disaggregated indicators. So far, estimation methods comprise direct estimation
and the model-based approach Empirical Best Prediction (see "Small area
estimation of poverty indicators" by Molina and Rao (2010) <doi:10.1002/cjs.10051>),
as well as their precision estimates. The assessment of the used model
is supported by a summary and diagnostic plots. For a suitable presentation of
estimates, map plots can be easily created. Furthermore, results can easily be
exported to excel.
Author: Ann-Kristin Kreutzmann [aut],
Soeren Pannier [aut, cre],
Natalia Rojas-Perilla [aut],
Timo Schmid [aut],
Matthias Templ [aut],
Nikos Tzavidis [aut]
Maintainer: Soeren Pannier <soeren.pannier@fu-berlin.de>
Diff between emdi versions 1.1.4 dated 2018-10-10 and 1.1.5 dated 2019-04-08
DESCRIPTION | 10 +-- MD5 | 18 +++--- NEWS.md | 5 + R/summary.emdi.R | 4 - R/write.excel.emdi.R | 2 build/vignette.rds |binary man/summary.emdi.Rd | 4 - man/write.excel.Rd | 2 tests/testthat/test_direct_estimation.R | 88 ++++++++++++++------------------ tests/testthat/test_point_estimation.R | 27 +++++---- 10 files changed, 80 insertions(+), 80 deletions(-)
Title: Time-Varying Coefficient Linear Regression for Single and
Multi-Equations
Description: Fitting time-varying coefficient models both for single and multi-equation regressions, using kernel smoothing techniques.
Author: Isabel Casas [aut, cre],
Ruben Fernandez-Casal [aut]
Maintainer: Isabel Casas <casasis@gmail.com>
Diff between tvReg versions 0.4.0 dated 2019-03-27 and 0.4.1 dated 2019-04-08
tvReg-0.4.0/tvReg/inst/doc/tvReg-vignette.R |only tvReg-0.4.0/tvReg/inst/doc/tvReg-vignette.Rmd |only tvReg-0.4.0/tvReg/inst/doc/tvReg-vignette.html |only tvReg-0.4.0/tvReg/man/methods.tvReg.Rd |only tvReg-0.4.0/tvReg/man/predict.tvReg.Rd |only tvReg-0.4.0/tvReg/vignettes/tvReg-vignette.Rmd |only tvReg-0.4.1/tvReg/DESCRIPTION | 17 +++-- tvReg-0.4.1/tvReg/MD5 | 39 ++++++------ tvReg-0.4.1/tvReg/NAMESPACE | 5 + tvReg-0.4.1/tvReg/NEWS.md | 22 +++++- tvReg-0.4.1/tvReg/R/forecast_tvreg.R | 13 ++-- tvReg-0.4.1/tvReg/R/methods_tvReg.R | 80 ++++++++++--------------- tvReg-0.4.1/tvReg/R/predict_tvReg.R | 12 +-- tvReg-0.4.1/tvReg/R/tvGLS.R | 30 +++++++-- tvReg-0.4.1/tvReg/R/tvLM.R | 2 tvReg-0.4.1/tvReg/R/tvOLS.R | 8 +- tvReg-0.4.1/tvReg/README.md |only tvReg-0.4.1/tvReg/build/vignette.rds |binary tvReg-0.4.1/tvReg/inst/doc/tvReg.R |only tvReg-0.4.1/tvReg/inst/doc/tvReg.Rmd |only tvReg-0.4.1/tvReg/inst/doc/tvReg.html |only tvReg-0.4.1/tvReg/man/forecast.Rd | 57 +++++++++++++++++ tvReg-0.4.1/tvReg/man/predict-tvReg.Rd |only tvReg-0.4.1/tvReg/man/tvLM.Rd | 15 ++-- tvReg-0.4.1/tvReg/man/tvOLS.Rd | 39 ++++++++++++ tvReg-0.4.1/tvReg/man/tvReg-methods.Rd |only tvReg-0.4.1/tvReg/vignettes/tvReg.Rmd |only 27 files changed, 231 insertions(+), 108 deletions(-)
Title: Multi-SNP Mediation Intersection-Union Test
Description: Testing the mediation effect of multiple SNPs on an outcome through a mediator.
Author: Wujuan Zhong
Maintainer: Wujuan Zhong <zhongwujuan@gmail.com>
Diff between SMUT versions 1.0 dated 2018-10-08 and 1.0.1 dated 2019-04-08
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/SMUT.R | 2 +- R/Testing_coefficient_of_mediator.R | 4 ++-- man/SMUT.Rd | 4 ++-- 5 files changed, 13 insertions(+), 13 deletions(-)
Title: Analysis of Multivariate Data and Repeated Measures Designs
Description: Implemented are various tests for semi-parametric repeated measures
and general MANOVA designs that do neither assume multivariate normality nor
covariance homogeneity, i.e., the procedures are applicable for a wide range
of general multivariate factorial designs. Furthermore, post-hoc comparisons
are provided for the multivariate analyses.
Friedrich, S., Konietschke, F. and Pauly, M. (2018) <arXiv:1801.08002>.
Author: Sarah Friedrich, Frank Konietschke, Markus Pauly
Maintainer: Sarah Friedrich <sarah.friedrich@alumni.uni-ulm.de>
Diff between MANOVA.RM versions 0.3.1 dated 2018-08-14 and 0.3.2 dated 2019-04-08
DESCRIPTION | 12 MD5 | 29 R/MANOVA-function.R | 6 R/MANOVA_Statistics.R | 6 R/MANOVA_simCI.R | 44 + R/MANOVAwide-function.R | 1 R/RM-function.R | 8 R/utility_functions.R | 54 + build/vignette.rds |binary inst/doc/Introduction_to_MANOVA.RM.Rmd | 7 inst/doc/Introduction_to_MANOVA.RM.html | 972 +++++++++++++------------------- man/MANOVA.Rd | 4 man/RM.Rd | 8 man/simCI.Rd | 12 vignettes/Introduction_to_MANOVA.RM.Rmd | 7 vignettes/Introduction_to_MANOVA.RM.md |only 16 files changed, 541 insertions(+), 629 deletions(-)
Title: Knowledge Synthesis in Agriculture - From Experimental Network
to Meta-Analysis
Description: Demo and dataset accompaying the books :
De l'analyse des réseaux expérimentaux à la méta-analyse: Méthodes et applications avec le logiciel R pour les sciences agronomiques et environnementales (Published 2018-06-28, Quae, for french version) by David Makowski, Francois Piraux and Francois Brun - <https://www.quae.com/produit/1514/9782759228164/de-l-analyse-des-reseaux-experimentaux-a-la-meta-analyse>
Knowledge Synthesis in Agriculture : from Experimental Network to Meta-Analysis (in preparation for 2018-06, Springer , for English version) by David Makowski, Francois Piraux and Francois Brun
A full description of all the material is in both books.
ACKNOWLEDGMENTS : The French network "RMT modeling and data analysis for agriculture" (<http://www.modelia.org>) have contributed to the development of this R package. This project and network are lead by ACTA (French Technical Institute for Agriculture) and was funded by a grant from the Ministry of Agriculture and Fishing of France.
Author: David Makowski (INRA) [aut],
Francois Piraux (Arvalis) [aut],
Francois Brun (ACTA) [aut, cre]
Maintainer: Francois Brun (ACTA) <francois.brun@acta.asso.fr>
Diff between KenSyn versions 0.2 dated 2017-12-10 and 0.3 dated 2019-04-08
DESCRIPTION | 16 ++++++---- MD5 | 53 ++++++++++++++++++------------------ R/KenSyn.r | 18 ++++++++---- R/N2O_data.r | 2 - R/citrus_data.r | 2 - R/machines_data.r | 2 - R/organic_data.r | 2 - R/wheat_var_data.r | 2 - R/wheat_var_itk_data.r | 2 - R/wheat_var_soil_data.r | 2 - R/wheat_var_years_data.r | 2 - R/wheatyield_data.r | 2 - demo/00Index | 27 +++++++++--------- demo/ch04a_network_mean_data.r | 8 ++--- demo/ch04b_network_hetero_var.r | 6 ++-- demo/ch04c_network_pluriannual.r | 6 ++-- demo/ch06b_metaanalysis_metareg.r | 15 +--------- demo/ch06c_metaanalysis_metareg_m.r |only man/KenSyn-package.Rd | 16 ++++++++-- man/N2O.Rd | 2 - man/citrus.Rd | 2 - man/machines.Rd | 2 - man/organic.Rd | 2 - man/wheat_var.Rd | 2 - man/wheat_var_itk.Rd | 2 - man/wheat_var_soil.Rd | 2 - man/wheat_var_years.Rd | 2 - man/wheatyield.Rd | 2 - 28 files changed, 106 insertions(+), 95 deletions(-)
Title: Incremental Calculation of Dynamic Time Warping
Description: The Dynamic Time Warping (DTW) distance measure for time series allows non-linear alignments of time series to match similar patterns in time series of different lengths and or different speeds. IncDTW is characterized by (1) the incremental calculation of DTW (reduces runtime complexity to a linear level for updating the DTW distance) - especially for life data streams or subsequence matching, (2) the vector based implementation of DTW which is faster because no matrices are allocated (reduces the space complexity from a quadratic to a linear level in the number of observations) - for all runtime intensive DTW computations, (3) the subsequence matching algorithm runDTW, that efficiently finds the k-NN to a query pattern in a long time series, and (4) C++ in the heart. For details about DTW see the original paper "Dynamic programming algorithm optimization for spoken word recognition" by Sakoe and Chiba (1978) <DOI:10.1109/TASSP.1978.1163055>.
Author: Maximilian Leodolter
Maintainer: Maximilian Leodolter <maximilian.leodolter@gmail.com>
Diff between IncDTW versions 1.0.5 dated 2019-01-03 and 1.1.0 dated 2019-04-08
IncDTW-1.0.5/IncDTW/inst/doc/Runtime_Comparison.R |only IncDTW-1.0.5/IncDTW/inst/doc/Runtime_Comparison.Rmd |only IncDTW-1.0.5/IncDTW/inst/doc/Runtime_Comparison.html |only IncDTW-1.0.5/IncDTW/vignettes/Runtime_Comparison.Rmd |only IncDTW-1.1.0/IncDTW/DESCRIPTION | 12 IncDTW-1.1.0/IncDTW/MD5 | 66 - IncDTW-1.1.0/IncDTW/NAMESPACE | 2 IncDTW-1.1.0/IncDTW/R/RcppExports.R | 96 +- IncDTW-1.1.0/IncDTW/R/data_simulation.R | 46 - IncDTW-1.1.0/IncDTW/R/dtw.R | 146 +++- IncDTW-1.1.0/IncDTW/R/dtw_plot.R | 1 IncDTW-1.1.0/IncDTW/R/notes.R | 56 + IncDTW-1.1.0/IncDTW/build/vignette.rds |binary IncDTW-1.1.0/IncDTW/inst/doc/IncDTW_An_R_Package_for_Incremental_Calculation_of_DTW.pdf |only IncDTW-1.1.0/IncDTW/inst/doc/IncDTW_An_R_Package_for_Incremental_Calculation_of_DTW.pdf.asis |only IncDTW-1.1.0/IncDTW/inst/doc/Incremental_Dynamic_Time_Warping.Rmd | 10 IncDTW-1.1.0/IncDTW/inst/doc/Incremental_Dynamic_Time_Warping.html | 14 IncDTW-1.1.0/IncDTW/man/IncDTW-package.Rd | 4 IncDTW-1.1.0/IncDTW/man/dec_dm.Rd | 4 IncDTW-1.1.0/IncDTW/man/drink_glass.Rd | 4 IncDTW-1.1.0/IncDTW/man/dtw.Rd | 14 IncDTW-1.1.0/IncDTW/man/dtw2vec.Rd | 4 IncDTW-1.1.0/IncDTW/man/dtw_dismat.Rd | 2 IncDTW-1.1.0/IncDTW/man/dtw_partial.Rd | 8 IncDTW-1.1.0/IncDTW/man/find_peaks.Rd |only IncDTW-1.1.0/IncDTW/man/idtw.Rd | 4 IncDTW-1.1.0/IncDTW/man/norm.Rd | 10 IncDTW-1.1.0/IncDTW/man/plot_idtw.Rd | 2 IncDTW-1.1.0/IncDTW/man/rundtw.Rd |only IncDTW-1.1.0/IncDTW/man/simulate_timewarp.Rd | 13 IncDTW-1.1.0/IncDTW/src/RcppExports.cpp | 365 ++++++---- IncDTW-1.1.0/IncDTW/src/init.c | 78 +- IncDTW-1.1.0/IncDTW/src/rundtw.cpp |only IncDTW-1.1.0/IncDTW/tests/testthat/test_dtw_dismat.R | 5 IncDTW-1.1.0/IncDTW/tests/testthat/test_dtw_disvec.R | 13 IncDTW-1.1.0/IncDTW/tests/testthat/test_find_peaks.R |only IncDTW-1.1.0/IncDTW/tests/testthat/test_lowerbound.R |only IncDTW-1.1.0/IncDTW/tests/testthat/test_rundtw_multiv.R |only IncDTW-1.1.0/IncDTW/tests/testthat/test_rundtw_univ.R |only IncDTW-1.1.0/IncDTW/vignettes/IncDTW_An_R_Package_for_Incremental_Calculation_of_DTW.pdf.asis |only IncDTW-1.1.0/IncDTW/vignettes/Incremental_Dynamic_Time_Warping.Rmd | 10 41 files changed, 696 insertions(+), 293 deletions(-)
Title: Computational Graphs
Description: Allows to create, evaluate, and differentiate computational graphs in R. A computational graph is a graph representation of a multivariate function decomposed by its (elementary) operations. Nodes in the graph represent arrays while edges represent dependencies among the arrays. An advantage of expressing a function as a computational graph is that this enables to differentiate the function by automatic differentiation. The 'cgraph' package supports various operations including basic arithmetic, trigonometry operations, and linear algebra operations. It differentiates computational graphs by reverse automatic differentiation. The flexible architecture of the package makes it applicable to solve a variety of problems including local sensitivity analysis, gradient-based optimization, and machine learning.
Author: Ron Triepels
Maintainer: Ron Triepels <dev@cgraph.org>
Diff between cgraph versions 4.0.2 dated 2019-04-06 and 4.0.3 dated 2019-04-08
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 7 +++++++ src/node.c | 12 ++++++++++-- 4 files changed, 23 insertions(+), 8 deletions(-)
Title: Tools for the Analysis of Air Pollution Data
Description: Tools to analyse, interpret and understand air
pollution data. Data are typically hourly time series
and both monitoring data and dispersion model output
can be analysed. Many functions can also be applied to
other data, including meteorological and traffic data.
Author: David Carslaw [aut, cre],
Karl Ropkins [aut]
Maintainer: David Carslaw <david.carslaw@york.ac.uk>
Diff between openair versions 2.6-4 dated 2019-03-28 and 2.6-5 dated 2019-04-08
DESCRIPTION | 8 MD5 | 144 - NAMESPACE | 288 +-- R/TheilSen.R | 1515 ++++++++--------- R/aqStats.R | 826 ++++----- R/calcPercentile.R | 162 - R/checkPrep.R | 314 +-- R/corPlot.R | 946 +++++------ R/cutData.R | 1288 +++++++-------- R/getMeta.R | 316 +-- R/importAURN.R | 506 ++--- R/importSAQN.R | 370 ++-- R/importWAQN.R | 282 +-- R/percentileRose.R | 1296 +++++++-------- R/polarFreq.R | 974 +++++------ R/polarPlot.R | 2648 +++++++++++++++---------------- R/quickText.R | 394 ++-- R/scatterPlot.R | 3840 ++++++++++++++++++++++----------------------- R/smoothTrend.R | 1180 ++++++------- R/timeAverage.R | 1138 ++++++------- R/timeProp.R | 870 +++++----- R/utilities.R | 2306 +++++++++++++-------------- R/windRose.R | 1916 +++++++++++----------- man/TaylorDiagram.Rd | 566 +++--- man/TheilSen.Rd | 564 +++--- man/aqStats.Rd | 218 +- man/binData.Rd | 104 - man/bootMeanDF.Rd | 56 man/calcFno2.Rd | 226 +- man/calcPercentile.Rd | 134 - man/calendarPlot.Rd | 424 ++-- man/conditionalEval.Rd | 384 ++-- man/conditionalQuantile.Rd | 340 +-- man/corPlot.Rd | 316 +-- man/cutData.Rd | 326 +-- man/drawOpenKey.Rd | 372 ++-- man/import.Rd | 248 +- man/importADMS.Rd | 324 +-- man/importAURN.Rd | 278 +-- man/importAURNCsv.Rd | 364 ++-- man/importKCL.Rd | 1072 ++++++------ man/importMeta.Rd | 132 - man/importSAQN.Rd | 230 +- man/importTraj.Rd | 302 +-- man/importWAQN.Rd | 144 - man/kernelExceed.Rd | 310 +-- man/linearRelation.Rd | 306 +-- man/modStats.Rd | 302 +-- man/mydata.Rd | 106 - man/openColours.Rd | 188 +- man/openair.Rd | 188 +- man/percentileRose.Rd | 424 ++-- man/polarAnnulus.Rd | 532 +++--- man/polarCluster.Rd | 362 ++-- man/polarFreq.Rd | 442 ++--- man/polarPlot.Rd | 960 +++++------ man/quickText.Rd | 96 - man/rollingMean.Rd | 134 - man/scatterPlot.Rd | 756 ++++---- man/selectByDate.Rd | 162 - man/selectRunning.Rd | 118 - man/smoothTrend.Rd | 440 ++--- man/splitByDate.Rd | 88 - man/summaryPlot.Rd | 352 ++-- man/timeAverage.Rd | 434 ++--- man/timePlot.Rd | 662 +++---- man/timeProp.Rd | 312 +-- man/timeVariation.Rd | 628 +++---- man/trajCluster.Rd | 294 +-- man/trajLevel.Rd | 530 +++--- man/trajPlot.Rd | 326 +-- man/trendLevel.Rd | 428 ++--- man/windRose.Rd | 648 +++---- 73 files changed, 20592 insertions(+), 20587 deletions(-)
Title: Semi-Confirmatory Structural Equation Modeling via Penalized
Likelihood
Description: Fits semi-confirmatory structural equation modeling (SEM) via penalized likelihood (PL) with LASSO or minimax concave penalty (MCP).
Author: Po-Hsien Huang [cre, aut],
Wen-Hsin Hu [aut]
Maintainer: Po-Hsien Huang <psyphh@gmail.com>
Diff between lslx versions 0.6.4 dated 2018-11-10 and 0.6.5 dated 2019-04-08
lslx-0.6.4/lslx/R/lslx-initialize-method.R |only lslx-0.6.4/lslx/R/lslx.R |only lslx-0.6.5/lslx/DESCRIPTION | 12 lslx-0.6.5/lslx/MD5 | 52 lslx-0.6.5/lslx/NAMESPACE | 1 lslx-0.6.5/lslx/R/lslx-class.R |only lslx-0.6.5/lslx/R/lslx-extract-method.R | 6 lslx-0.6.5/lslx/R/lslx-fit-method.R | 66 lslx-0.6.5/lslx/R/lslx-print-method.R | 4 lslx-0.6.5/lslx/R/lslx-set-block-method.R | 6 lslx-0.6.5/lslx/R/lslx-set-coefficient-method.R | 17 lslx-0.6.5/lslx/R/lslx-set-data-method.R | 2 lslx-0.6.5/lslx/R/lslx-set-directed-method.R | 6 lslx-0.6.5/lslx/R/lslx-set-heterogeneity-method.R | 4 lslx-0.6.5/lslx/R/lslx-set-undirected-method.R | 6 lslx-0.6.5/lslx/R/lslx-summarize-method.R | 20 lslx-0.6.5/lslx/R/lslx-test-method.R | 8 lslx-0.6.5/lslx/R/lslx-validate-method.R | 6 lslx-0.6.5/lslx/R/lslxData.R | 172 - lslx-0.6.5/lslx/R/lslxFitting.R | 10 lslx-0.6.5/lslx/R/lslxModel.R | 1140 +++++++------ lslx-0.6.5/lslx/R/prelslx-class.R |only lslx-0.6.5/lslx/R/prelslx-initialize-method.R |only lslx-0.6.5/lslx/inst/doc/factor-analysis.html | 83 lslx-0.6.5/lslx/inst/doc/missing-data-analysis.html | 29 lslx-0.6.5/lslx/inst/doc/multi-group-analysis.html | 29 lslx-0.6.5/lslx/inst/doc/regression-analysis.html | 29 lslx-0.6.5/lslx/inst/doc/structural-equation-modeling.html | 29 lslx-0.6.5/lslx/man/lslx.Rd | 10 lslx-0.6.5/lslx/man/prelslx.Rd |only 30 files changed, 1021 insertions(+), 726 deletions(-)
Title: Fast Adaptive Spectral Clustering for Single and Multi-View Data
Description: A self-tuning spectral clustering method for single or multi-view data. 'Spectrum' uses a new type of adaptive density aware kernel that strengthens local connections in the graph. It uses a tensor product graph data integration and diffusion procedure to integrate different data sources and reduce noise. 'Spectrum' analyses eigenvector variance or distribution to determine the number of clusters. The method is well suited for a wide range of data, including both Gaussian and non-Gaussian structures.
Author: Christopher R John, David Watson
Maintainer: Christopher R John <chris.r.john86@gmail.com>
Diff between Spectrum versions 0.4 dated 2019-03-15 and 0.5 dated 2019-04-08
DESCRIPTION | 8 MD5 | 18 - R/spectrum.R | 568 +++++++++++++++++++++------------------- R/spectrum_functions.R | 4 build/vignette.rds |binary inst/doc/Spectrum_vignette.R | 10 inst/doc/Spectrum_vignette.Rmd | 91 ++++-- inst/doc/Spectrum_vignette.pdf |binary man/Spectrum.Rd | 12 vignettes/Spectrum_vignette.Rmd | 91 ++++-- 10 files changed, 484 insertions(+), 318 deletions(-)
Title: High-Dimensional Undirected Graph Estimation
Description: Provides a general framework for
high-dimensional undirected graph estimation. It integrates
data preprocessing, neighborhood screening, graph estimation,
and model selection techniques into a pipeline. In
preprocessing stage, the nonparanormal(npn) transformation is
applied to help relax the normality assumption. In the graph
estimation stage, the graph structure is estimated by
Meinshausen-Buhlmann graph estimation or the graphical lasso,
and both methods can be further accelerated by the lossy
screening rule preselecting the neighborhood of each variable
by correlation thresholding. We target on high-dimensional data
analysis usually d >> n, and the computation is
memory-optimized using the sparse matrix output. We also
provide a computationally efficient approach, correlation
thresholding graph estimation. Three
regularization/thresholding parameter selection methods are
included in this package: (1)stability approach for
regularization selection (2) rotation information criterion (3)
extended Bayesian information criterion which is only available
for the graphical lasso.
Author: Haoming Jiang, Xinyu Fei, Han Liu, Kathryn Roeder, John Lafferty, Larry
Wasserman, Xingguo Li, and Tuo Zhao
Maintainer: Haoming Jiang <jianghm.ustc@gmail.com>
Diff between huge versions 1.3.1 dated 2019-03-11 and 1.3.2 dated 2019-04-08
DESCRIPTION | 10 +++++----- MD5 | 32 ++++++++++++++++++-------------- NAMESPACE | 4 ++++ R/RcppExports.R | 8 ++++---- R/huge.R | 1 + R/huge.ct.R | 11 ++++++++++- R/huge.glasso.R | 13 ++++++++++++- R/huge.mb.R | 19 ++++++++++++++++--- R/huge.tiger.R | 14 ++++++++++++-- configure.ac | 2 +- inst/doc/vignette.pdf |binary man/huge.ct.Rd |only man/huge.glasso.Rd |only man/huge.mb.Rd |only man/huge.tiger.Rd |only src/RcppExports.cpp | 28 +++++++++++----------------- src/SPMBgraphlasso.cpp | 29 +++++++++++++++++------------ src/SPMBgraphsqrt.cpp | 25 ++++++++++--------------- src/hugeglasso.cpp | 14 +++++++------- 19 files changed, 128 insertions(+), 82 deletions(-)
Title: Management of Deterministic and Stochastic Projects
Description: Management problems of deterministic and stochastic projects. It obtains the duration of a project and the appropriate slack for each activity in a deterministic context. In addition it obtains a schedule of activities' time (Castro, Gómez & Tejada (2007) <doi:10.1016/j.orl.2007.01.003>). It also allows the management of resources. When the project is done, and the actual duration for each activity is known, then it can know how long the project is delayed and make a fair delivery of the delay between each activity (Bergantiños, Valencia-Toledo & Vidal-Puga (2018) <doi:10.1016/j.dam.2017.08.012>). In a stochastic context it can estimate the average duration of the project and plot the density of this duration, as well as, the density of the early and last times of the chosen activities. As in the deterministic case, it can make a distribution of the delay generated by observing the project already carried out.
Author: Juan Carlos Gonçalves Dosantos [aut, cre],
Ignacio García Jurado [aut],
Julián Costa Bouzas [aut]
Maintainer: Juan Carlos Gonçalves Dosantos <juan.carlos.goncalves@udc.es>
Diff between ProjectManagement versions 1.1 dated 2019-01-07 and 1.2.1 dated 2019-04-08
DESCRIPTION | 13 - MD5 | 44 +++-- NAMESPACE | 15 + R/ProjectManagement.R | 9 - R/function_early_time.R | 15 - R/function_last_time.R | 18 +- R/function_mce.R |only R/function_organize.R | 13 - R/function_pert_calendario.R | 145 +++++++++++++++-- R/function_pert_demora.R | 95 +++++++---- R/function_pert_estocastico.R | 79 +++++++-- R/function_pert_estocastico_demora.R | 295 ++++++++++++++++++++++++++++++----- R/function_rebuild.R |only R/function_resource_allocation.R |only R/function_resource_leveling.R |only man/ProjectManagement-package.Rd | 4 man/delay.pert.Rd | 30 ++- man/delay.stochastic.pert.Rd | 31 ++- man/early.time.Rd | 10 - man/last.time.Rd | 13 - man/levelling.resources.Rd |only man/mce.Rd |only man/organize.Rd | 10 - man/rebuild.Rd |only man/resource.allocation.Rd |only man/schedule.pert.Rd | 13 - man/stochastic.pert.Rd | 21 +- 27 files changed, 676 insertions(+), 197 deletions(-)
More information about ProjectManagement at CRAN
Permanent link
Title: Kalman Filter and Smoother for Exponential Family State Space
Models
Description: State space modelling is an efficient and flexible framework for
statistical inference of a broad class of time series and other data. KFAS
includes computationally efficient functions for Kalman filtering, smoothing,
forecasting, and simulation of multivariate exponential family state space models,
with observations from Gaussian, Poisson, binomial, negative binomial, and gamma
distributions. See the paper by Helske (2017) <doi:10.18637/jss.v078.i10> for details.
Author: Jouni Helske [aut, cre] (<https://orcid.org/0000-0001-7130-793X>)
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between KFAS versions 1.3.4 dated 2019-02-03 and 1.3.5 dated 2019-04-08
ChangeLog | 7 DESCRIPTION | 11 MD5 | 60 +-- R/KFAS-defunct.R | 106 ++--- R/SSMarima.R | 152 ++++---- R/SSMcustom.R | 188 +++++----- R/SSMcycle.R | 190 +++++----- R/SSModel.R | 780 ++++++++++++++++++++++---------------------- R/SSMregression.R | 392 +++++++++++----------- R/SSMtrend.R | 202 +++++------ R/artransform.R | 46 +- R/checkModel.R | 292 ++++++++-------- R/extract.SSModel.R | 564 +++++++++++++++---------------- R/fitSSM.R | 394 +++++++++++----------- R/fitted.KFS.R | 106 ++--- R/interval.R | 180 +++++----- R/ldl.R | 72 ++-- R/plot.SSModel.R | 200 +++++------ R/rename_states.R | 48 +- R/simHelper.R | 90 ++--- R/transformSSM.R | 316 ++++++++--------- build/vignette.rds |binary inst/doc/KFAS.pdf |binary man/Extract.SSModel.Rd | 6 man/SSModel.Rd | 8 man/coef.SSModel.Rd | 9 man/fitted.SSModel.Rd | 5 man/predict.SSModel.Rd | 6 man/print.KFS.Rd | 4 man/residuals.KFS.Rd | 4 tests/testthat/testBasics.R | 4 31 files changed, 2224 insertions(+), 2218 deletions(-)
Title: Interface to the 'g:Profiler' Toolset
Description: A toolset for functional enrichment analysis and visualization, gene/protein/SNP identifier conversion and mapping orthologous genes across species via 'g:Profiler' (<https://biit.cs.ut.ee/gprofiler>).
The main tools are:
(1) 'g:GOSt' - functional enrichment analysis and visualization of gene lists;
(2) 'g:Convert' - gene/protein/transcript identifier conversion across various namespaces;
(3) 'g:Orth' - orthology search across species;
(4) 'g:SNPense' - mapping SNP rs identifiers to chromosome positions, genes and variant effects
This package is an R interface corresponding to the 2019 update of 'g:Profiler' and provides access to 'g:Profiler' for versions 'e94_eg41_p11' and higher. See the package 'gProfileR' for accessing older versions from the 'g:Profiler' toolset.
Author: Liis Kolberg <liis.kolberg@ut.ee>, Uku Raudvere <uku.raudvere@ut.ee>
Maintainer: Liis Kolberg <liis.kolberg@ut.ee>
Diff between gprofiler2 versions 0.1.1 dated 2019-03-25 and 0.1.2 dated 2019-04-08
gprofiler2-0.1.1/gprofiler2/README.md |only gprofiler2-0.1.2/gprofiler2/DESCRIPTION | 6 +++--- gprofiler2-0.1.2/gprofiler2/MD5 | 5 ++--- gprofiler2-0.1.2/gprofiler2/R/gprofiler2.R | 7 ++++++- 4 files changed, 11 insertions(+), 7 deletions(-)
Title: Border and Area Estimation of Data Measured with Additive Error
Description: Provides methods for estimating borders of uniform distribution on
the interval (one-dimensional) and on the elliptical domain (two-dimensional)
under measurement errors. For one-dimensional case, it also estimates the
length of underlying uniform domain and tests the hypothesized length against
two-sided or one-sided alternatives. For two-dimensional case, it estimates
the area of underlying uniform domain. It works with numerical inputs as well
as with pictures in JPG format.
Author: Mirta Bensic [aut],
Safet Hamedovic [aut],
Kristian Sabo [aut],
Petar Taler [aut, cre]
Maintainer: Petar Taler <petar@mathos.hr>
Diff between LeArEst versions 0.2.0 dated 2018-05-08 and 1.0.0 dated 2019-04-08
DESCRIPTION | 11 - MD5 | 30 +- NEWS.md | 6 R/lengthest.R | 174 +++++++++++++++-- R/lengthtest.R | 45 ++-- R/loadImage.R | 34 ++- R/loadImageArea.R | 73 ++++--- R/util.R | 24 ++ inst/www/index_area.html | 6 inst/www/index_esttest.html | 450 ++++++++++++++++++++++---------------------- inst/www/js/app_esttest.js | 69 +++--- man/areaest.Rd | 5 man/lengthest.Rd | 23 +- man/lengthtest.Rd | 25 +- man/startweb.area.Rd | 2 man/startweb.esttest.Rd | 2 16 files changed, 596 insertions(+), 383 deletions(-)
Title: Add More 'AdminLTE2' Components to 'shinydashboard'
Description: Extend 'shinydashboard' with 'AdminLTE2' components.
'AdminLTE2' is a free 'Bootstrap 3' dashboard template available
at <https://adminlte.io>. Customize boxes, add timelines and a lot more.
Author: David Granjon [aut, cre],
RinteRface [cph],
Almasaeed Studio [ctb, cph] (AdminLTE2 theme for Bootstrap 3),
Guang Yang [ctb, cph] (ygdashboard original template),
Winston Chang [ctb, cph] (Functions from shinydashboard),
Petr Tichy [ctb, cph] (CSS preloader),
Victor Perrier [ctb] (improved the shinydashboardPlusGallery)
Maintainer: David Granjon <dgranjon@ymail.com>
Diff between shinydashboardPlus versions 0.6.0 dated 2018-09-20 and 0.7.0 dated 2019-04-08
shinydashboardPlus-0.6.0/shinydashboardPlus/R/accordion.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/R/attachmentBlock.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/R/blockQuote.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/R/boxPad.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/R/buttons.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/R/dashboardLabel.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/R/descriptionBlock.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/R/enhanced-boxes.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/R/loading-state.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/R/nav-pills.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/R/preloader.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/R/product-list.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/R/setPulse.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/R/setShadow.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/R/setShake.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/R/setZoom.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/R/starBlock.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/R/timeline.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/R/todo-list.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/R/user-list.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/R/user-post.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/R/verticalProgress.R |only shinydashboardPlus-0.6.0/shinydashboardPlus/man/setPulse.Rd |only shinydashboardPlus-0.6.0/shinydashboardPlus/man/setShadow.Rd |only shinydashboardPlus-0.6.0/shinydashboardPlus/man/setShake.Rd |only shinydashboardPlus-0.6.0/shinydashboardPlus/man/setZoom.Rd |only shinydashboardPlus-0.7.0/shinydashboardPlus/DESCRIPTION | 29 shinydashboardPlus-0.7.0/shinydashboardPlus/LICENSE |only shinydashboardPlus-0.7.0/shinydashboardPlus/MD5 | 220 shinydashboardPlus-0.7.0/shinydashboardPlus/NAMESPACE | 11 shinydashboardPlus-0.7.0/shinydashboardPlus/NEWS.md | 33 shinydashboardPlus-0.7.0/shinydashboardPlus/R/boxes.R |only shinydashboardPlus-0.7.0/shinydashboardPlus/R/dashboardFooter.R |only shinydashboardPlus-0.7.0/shinydashboardPlus/R/dashboardHeaderPlus.R | 153 shinydashboardPlus-0.7.0/shinydashboardPlus/R/dashboardPagePlus.R | 25 shinydashboardPlus-0.7.0/shinydashboardPlus/R/deps.R | 62 shinydashboardPlus-0.7.0/shinydashboardPlus/R/rightSidebar.R | 17 shinydashboardPlus-0.7.0/shinydashboardPlus/R/setDashOptions.R |only shinydashboardPlus-0.7.0/shinydashboardPlus/R/useful-items.R |only shinydashboardPlus-0.7.0/shinydashboardPlus/R/utils.R | 59 shinydashboardPlus-0.7.0/shinydashboardPlus/README.md | 14 shinydashboardPlus-0.7.0/shinydashboardPlus/inst/doc/box-elements.Rmd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/inst/doc/box-elements.html | 497 + shinydashboardPlus-0.7.0/shinydashboardPlus/inst/doc/boxPlus-sidebar.html | 461 + shinydashboardPlus-0.7.0/shinydashboardPlus/inst/doc/css-preloader.html | 349 + shinydashboardPlus-0.7.0/shinydashboardPlus/inst/doc/extra-css-effects.Rmd | 356 - shinydashboardPlus-0.7.0/shinydashboardPlus/inst/doc/extra-css-effects.html | 571 -- shinydashboardPlus-0.7.0/shinydashboardPlus/inst/doc/improved-boxes.html | 977 ++- shinydashboardPlus-0.7.0/shinydashboardPlus/inst/doc/left-menu-navbar.html | 555 +- shinydashboardPlus-0.7.0/shinydashboardPlus/inst/doc/rightSidebar.html | 395 + shinydashboardPlus-0.7.0/shinydashboardPlus/inst/examples/app.R | 2547 ---------- shinydashboardPlus-0.7.0/shinydashboardPlus/inst/examples/box_elements |only shinydashboardPlus-0.7.0/shinydashboardPlus/inst/examples/boxes |only shinydashboardPlus-0.7.0/shinydashboardPlus/inst/examples/buttons |only shinydashboardPlus-0.7.0/shinydashboardPlus/inst/examples/extra_css_tab.R |only shinydashboardPlus-0.7.0/shinydashboardPlus/inst/examples/extra_elements |only shinydashboardPlus-0.7.0/shinydashboardPlus/inst/examples/global.R |only shinydashboardPlus-0.7.0/shinydashboardPlus/inst/examples/header_tab.R |only shinydashboardPlus-0.7.0/shinydashboardPlus/inst/examples/rightsidebar_tab.R |only shinydashboardPlus-0.7.0/shinydashboardPlus/inst/examples/www |only shinydashboardPlus-0.7.0/shinydashboardPlus/inst/js/rightSidebar.js | 8 shinydashboardPlus-0.7.0/shinydashboardPlus/inst/materialDesign-1.0 |only shinydashboardPlus-0.7.0/shinydashboardPlus/inst/shinydashboardPlus-0.6.0 |only shinydashboardPlus-0.7.0/shinydashboardPlus/man/accordion.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/accordionItem.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/appButton.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/attachmentBlock.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/blockQuote.Rd | 4 shinydashboardPlus-0.7.0/shinydashboardPlus/man/boxComment.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/boxPad.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/boxPlus.Rd | 3 shinydashboardPlus-0.7.0/shinydashboardPlus/man/boxProfile.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/boxProfileItem.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/boxProfileItemList.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/carousel.Rd |only shinydashboardPlus-0.7.0/shinydashboardPlus/man/carouselItem.Rd |only shinydashboardPlus-0.7.0/shinydashboardPlus/man/dashboardFooter.Rd |only shinydashboardPlus-0.7.0/shinydashboardPlus/man/dashboardLabel.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/dashboardPagePlus.Rd | 18 shinydashboardPlus-0.7.0/shinydashboardPlus/man/dashboardUser.Rd |only shinydashboardPlus-0.7.0/shinydashboardPlus/man/dashboardUserItem.Rd |only shinydashboardPlus-0.7.0/shinydashboardPlus/man/descriptionBlock.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/dropdownDivider.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/dropdownItem.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/dropdownItemList.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/figures/ShinyDashboardPlus_FINAL.png |only shinydashboardPlus-0.7.0/shinydashboardPlus/man/figures/ShinyDashboardPlus_FINAL.svg |only shinydashboardPlus-0.7.0/shinydashboardPlus/man/flipBox.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/gradientBox.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/loadingState.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/navPills.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/navPillsItem.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/preloader.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/productList.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/productListItem.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/renderUser.Rd |only shinydashboardPlus-0.7.0/shinydashboardPlus/man/rightSidebar.Rd | 8 shinydashboardPlus-0.7.0/shinydashboardPlus/man/socialBox.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/socialButton.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/starBlock.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/timelineBlock.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/timelineEnd.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/timelineItem.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/timelineItemMedia.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/timelineLabel.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/timelineStart.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/todoList.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/todoListItem.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/userList.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/userListItem.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/userOutput.Rd |only shinydashboardPlus-0.7.0/shinydashboardPlus/man/userPost.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/userPostMedia.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/userPostToolItem.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/userPostToolItemList.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/validStatuses.Rd |only shinydashboardPlus-0.7.0/shinydashboardPlus/man/validStatusesPlus.Rd |only shinydashboardPlus-0.7.0/shinydashboardPlus/man/verticalProgress.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/man/widgetUserBox.Rd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/vignettes/box-elements.Rmd | 2 shinydashboardPlus-0.7.0/shinydashboardPlus/vignettes/extra-css-effects.Rmd | 356 - 121 files changed, 3192 insertions(+), 4622 deletions(-)
More information about shinydashboardPlus at CRAN
Permanent link
Title: Connect to 'R-hub'
Description: Run 'R CMD check' on any of the 'R-hub' (<https://builder.r-hub.io/>)
architectures, from the command line. The current architectures include
'Windows', 'macOS', 'Solaris' and various 'Linux' distributions.
Author: Gábor Csárdi [aut, cre],
Maëlle Salmon [aut] (<https://orcid.org/0000-0002-2815-0399>),
R Consortium [fnd]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between rhub versions 1.1.0 dated 2019-03-25 and 1.1.1 dated 2019-04-08
DESCRIPTION | 14 +++--- MD5 | 12 ++--- NEWS.md | 22 +++++++++ R/check-class.R | 97 ++++++++++++++++++++++++++++++------------ R/utils.R | 4 + build/rhub.pdf |binary inst/doc/local-debugging.html | 2 7 files changed, 110 insertions(+), 41 deletions(-)
Title: Bayesian Model Selection and Averaging for Non-Local and Local
Priors
Description: Bayesian model selection and averaging for regression and mixtures for non-local and selected local priors.
Author: David Rossell, John D. Cook, Donatello Telesca, P. Roebuck
Maintainer: David Rossell <rosselldavid@gmail.com>
Diff between mombf versions 2.1.2 dated 2018-06-22 and 2.2.1 dated 2019-04-08
mombf-2.1.2/mombf/src/Makevars |only mombf-2.2.1/mombf/ChangeLog | 19 mombf-2.2.1/mombf/DESCRIPTION | 28 mombf-2.2.1/mombf/MD5 | 96 - mombf-2.2.1/mombf/NAMESPACE | 18 mombf-2.2.1/mombf/R/AllGenerics.R | 4 mombf-2.2.1/mombf/R/RcppExports.R |only mombf-2.2.1/mombf/R/dmom.R | 121 + mombf-2.2.1/mombf/R/modelSelection.R | 695 +++++++- mombf-2.2.1/mombf/R/modelsearch.R | 3 mombf-2.2.1/mombf/R/mombf.R | 10 mombf-2.2.1/mombf/R/msPriorSpec.R | 26 mombf-2.2.1/mombf/R/nlpMarginal.R | 21 mombf-2.2.1/mombf/R/rmom.R | 54 mombf-2.2.1/mombf/R/testfunction.R |only mombf-2.2.1/mombf/R/zellnerLM.R | 6 mombf-2.2.1/mombf/build/vignette.rds |binary mombf-2.2.1/mombf/cleanup |only mombf-2.2.1/mombf/data/hald.rda |binary mombf-2.2.1/mombf/inst/doc/mombf.R | 133 + mombf-2.2.1/mombf/inst/doc/mombf.Rnw | 164 +- mombf-2.2.1/mombf/inst/doc/mombf.pdf |binary mombf-2.2.1/mombf/man/bbPrior.Rd | 32 mombf-2.2.1/mombf/man/dmom.Rd | 44 mombf-2.2.1/mombf/man/mode2g.Rd | 49 mombf-2.2.1/mombf/man/modelSelection.Rd | 96 - mombf-2.2.1/mombf/man/mombf.Rd | 19 mombf-2.2.1/mombf/man/momknown.Rd | 6 mombf-2.2.1/mombf/man/msPriorSpec-class.Rd | 42 mombf-2.2.1/mombf/man/msfit-class.Rd | 22 mombf-2.2.1/mombf/man/nlpMarginals.Rd | 3 mombf-2.2.1/mombf/man/postModeOrtho.Rd | 2 mombf-2.2.1/mombf/man/rnlp.Rd | 43 mombf-2.2.1/mombf/src/Makevars.win |only mombf-2.2.1/mombf/src/Polynomial.cpp | 72 mombf-2.2.1/mombf/src/Polynomial.h | 10 mombf-2.2.1/mombf/src/PolynomialRootFinder.cpp | 2 mombf-2.2.1/mombf/src/PolynomialRootFinder.h | 2 mombf-2.2.1/mombf/src/RcppExports.cpp |only mombf-2.2.1/mombf/src/crossprodmat.cpp |only mombf-2.2.1/mombf/src/crossprodmat.h |only mombf-2.2.1/mombf/src/cstat.cpp | 311 ++- mombf-2.2.1/mombf/src/cstat.h | 24 mombf-2.2.1/mombf/src/do_mombf.h | 39 mombf-2.2.1/mombf/src/mixtures.cpp | 20 mombf-2.2.1/mombf/src/mixtures.h | 8 mombf-2.2.1/mombf/src/modelSel.cpp | 1957 +++++++++++++++++++++---- mombf-2.2.1/mombf/src/modelSel.h | 261 ++- mombf-2.2.1/mombf/src/modselFunction.cpp |only mombf-2.2.1/mombf/src/modselFunction.h |only mombf-2.2.1/mombf/src/modselIntegrals.cpp | 1 mombf-2.2.1/mombf/src/modselIntegrals.h | 2 mombf-2.2.1/mombf/vignettes/mombf.Rnw | 164 +- mombf-2.2.1/mombf/vignettes/references.bib | 29 54 files changed, 3587 insertions(+), 1071 deletions(-)
Title: Spatial Lag Model Trees
Description: Model-based linear model trees adjusting for spatial correlation using a
simultaneous autoregressive spatial lag, Wagner and Zeileis (2019)
<doi:10.1111/geer.12146>.
Author: Martin Wagner [aut],
Achim Zeileis [aut, cre] (<https://orcid.org/0000-0003-0918-3766>),
Roger Bivand [ctb] (<https://orcid.org/0000-0003-2392-6140>)
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between lagsarlmtree versions 1.0-0 dated 2017-10-04 and 1.0-1 dated 2019-04-08
DESCRIPTION | 24 +++++++++++++++--------- MD5 | 22 +++++++++++----------- NAMESPACE | 3 ++- NEWS | 16 +++++++++++++++- R/lagsarlmtree.R | 18 ++++++++++++++---- build/partial.rdb |binary data/GrowthNUTS2.rda |binary data/WeightsNUTS2.rda |binary demo/00Index | 2 +- demo/GrowthNUTS2.R | 6 +++--- inst/CITATION | 7 ++++--- man/lagsarlmtree.Rd | 31 ++++++++++++++++++++++++------- 12 files changed, 89 insertions(+), 40 deletions(-)
Title: Tools for Defensive Programming
Description: Tools for defensive programming, inspired by 'purrr' mappers and
based on 'rlang'.'attempt' extends and facilitates defensive programming by
providing a consistent grammar, and provides a set of easy to use functions
for common tests and conditions. 'attempt' only depends on 'rlang', and
focuses on speed, so it can be easily integrated in other functions and
used in data analysis.
Author: Colin Fay [aut, cre] (<https://orcid.org/0000-0001-7343-1846>)
Maintainer: Colin Fay <contact@colinfay.me>
Diff between attempt versions 0.2.1 dated 2018-04-20 and 0.3.0 dated 2019-04-08
DESCRIPTION | 21 +- LICENSE | 2 MD5 | 75 ++++--- NAMESPACE | 3 NEWS.md | 6 R/adverbs.R | 45 ++++ R/attempt-package.R | 6 R/is_class.R |only R/on_error.R |only R/warn_if.R | 2 README.md | 206 +++++++++++--------- build/vignette.rds |binary inst/doc/a_intro_attempt.R | 2 inst/doc/a_intro_attempt.Rmd | 18 + inst/doc/a_intro_attempt.html | 65 ++++-- inst/doc/b_try_catch.R | 27 +- inst/doc/b_try_catch.Rmd | 54 +++-- inst/doc/b_try_catch.html | 376 +++++++++++++++++++------------------ inst/doc/c_adverbs.R | 13 - inst/doc/c_adverbs.Rmd | 29 +- inst/doc/c_adverbs.html | 124 ++++++++---- inst/doc/d_if.R | 10 inst/doc/d_if.Rmd | 21 -- inst/doc/d_if.html | 95 +++++---- inst/doc/e_conditions.R | 24 +- inst/doc/e_conditions.Rmd | 55 +++-- inst/doc/e_conditions.html | 244 +++++++++++++----------- inst/doc/tests_and_coverage.R |only inst/doc/tests_and_coverage.Rmd |only inst/doc/tests_and_coverage.html |only man/attempt-package.Rd | 6 man/discretly.Rd |only man/is_try_error.Rd |only man/messagehandler.Rd | 2 man/on_error.Rd |only tests/README.md |only tests/testthat/test-if.R | 76 ++++++- tests/testthat/test-is_try_error.R |only vignettes/a_intro_attempt.Rmd | 18 + vignettes/b_try_catch.Rmd | 54 +++-- vignettes/c_adverbs.Rmd | 29 +- vignettes/d_if.Rmd | 21 -- vignettes/e_conditions.Rmd | 55 +++-- vignettes/tests_and_coverage.Rmd |only 44 files changed, 1090 insertions(+), 694 deletions(-)
Title: Assessing Essential Unidimensionality Using External Validity
Information
Description: Assess essential unidimensionality using external validity
information using the procedure proposed by Ferrando & Lorenzo-Seva
(2019) <doi:10.1177/0013164418824755>. Provides two indices for assessing
differential and incremental validity, both based on a second-order
modelling schema for the general factor.
Author: Pere Joan Ferrando, David Navarro-Gonzalez, Urbano Lorenzo-Seva
Maintainer: David Navarro-Gonzalez <david.navarro@urv.cat>
Diff between unival versions 1.0.1 dated 2019-03-06 and 1.0.2 dated 2019-04-08
DESCRIPTION | 8 ++--- MD5 | 4 +- R/unival.R | 92 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++--- 3 files changed, 94 insertions(+), 10 deletions(-)
Title: Functions to Support the ICES Transparent Assessment Framework
Description: Functions to support the ICES Transparent Assessment Framework
<http://taf.ices.dk> to organize data, methods, and results used in ICES
assessments. ICES is an organization facilitating international collaboration
in marine science.
Author: Arni Magnusson [aut, cre],
Colin Millar [aut],
Alexandros Kokkalis [ctb]
Maintainer: Arni Magnusson <arni.magnusson@ices.dk>
Diff between icesTAF versions 2.2-0 dated 2019-02-22 and 2.3-0 dated 2019-04-08
DESCRIPTION | 15 +++++--- MD5 | 78 ++++++++++++++++++++++++---------------------- NAMESPACE | 2 + NEWS | 31 +++++++++++++++++- R/draft.data.R | 33 +++++++++++-------- R/draft.software.R | 9 +++-- R/file.encoding.R | 2 - R/icesTAF-package.R | 4 +- R/long2taf.R | 2 - R/os.R | 16 ++++++--- R/process.bib.R | 83 +++++++++++++++++++++++++++---------------------- R/sourceDir.R |only R/taf.bootstrap.R | 23 ++++++++----- R/taf.png.R | 14 +++++--- R/taf.skeleton.R | 2 - R/taf.unzip.R | 6 +-- R/taf2long.R | 2 - R/taf2xtab.R | 2 - R/tt.R | 2 + R/write.taf.R | 2 - R/xtab2taf.R | 8 ++-- R/zoom.R |only data/catage.long.rda |binary data/catage.taf.rda |binary data/catage.xtab.rda |binary data/summary.taf.rda |binary data/taf.colors.rda |binary man/draft.data.Rd | 28 +++++++++------- man/draft.software.Rd | 6 ++- man/icesTAF-package.Rd | 4 +- man/long2taf.Rd | 2 - man/os.Rd | 11 ++++-- man/process.bib.Rd | 56 +++++++++++++++++---------------- man/sourceDir.Rd |only man/taf.bootstrap.Rd | 19 +++++++---- man/taf.png.Rd | 14 +++++--- man/taf.unzip.Rd | 4 +- man/taf2long.Rd | 2 - man/taf2xtab.Rd | 2 - man/tt.Rd | 2 + man/xtab2taf.Rd | 6 ++- man/zoom.Rd |only 42 files changed, 300 insertions(+), 192 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-26 0.1.1
2019-03-24 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-20 0.2.0
2018-01-03 0.1.0
Title: An Easy Way to Report ROC Analysis
Description: Provides an easy way to report the results of ROC analysis, including:
1. an ROC curve. 2. the value of Cutoff, AUC (Area Under Curve), ACC (accuracy),
SEN (sensitivity), SPE (specificity),
PLR (positive likelihood ratio), NLR (negative likelihood ratio),
PPV (positive predictive value), NPV (negative predictive value).
Author: Zhicheng Du, Yuantao Hao
Maintainer: Zhicheng Du<dgdzc@hotmail.com>
Diff between reportROC versions 3.2 dated 2018-09-02 and 3.3 dated 2019-04-08
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/reportROC.R | 10 +++++++++- man/reportROC.Rd | 2 ++ 4 files changed, 17 insertions(+), 7 deletions(-)
Title: Programming with Big Data -- Scalable Linear Algebra Packages
Description: Utilizing scalable linear algebra packages mainly
including 'BLACS', 'PBLAS', and 'ScaLAPACK' in double precision via
'pbdMPI' based on 'ScaLAPACK' version 2.0.2.
Author: Wei-Chen Chen [aut, cre],
Drew Schmidt [aut],
George Ostrouchov [aut],
Pragneshkumar Patel [aut],
Brian Ripley [ctb] (Solaris & Mac)
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdSLAP versions 0.2-4 dated 2018-04-05 and 0.2-5 dated 2019-04-08
pbdSLAP-0.2-4/pbdSLAP/R/get_conf.r |only pbdSLAP-0.2-5/pbdSLAP/DESCRIPTION | 10 +++++----- pbdSLAP-0.2-5/pbdSLAP/MD5 | 13 ++++++------- pbdSLAP-0.2-5/pbdSLAP/configure | 23 +++++++++++++++++------ pbdSLAP-0.2-5/pbdSLAP/configure.ac | 8 ++++---- pbdSLAP-0.2-5/pbdSLAP/inst/doc/pbdSLAP-guide.pdf |binary pbdSLAP-0.2-5/pbdSLAP/src/Makevars.in | 8 ++++---- pbdSLAP-0.2-5/pbdSLAP/src/Makevars.win | 8 ++++---- 8 files changed, 40 insertions(+), 30 deletions(-)
Title: Projecting Customer Retention Based on Fader and Hardie
Probability Models
Description: Project Customer Retention based on Beta Geometric, Beta Discrete Weibull and Latent Class
Discrete Weibull Models.This package is based on Fader and Hardie (2007)
<doi:10.1002/dir.20074> and Fader and Hardie et al. (2018) <doi:10.1016/j.intmar.2018.01.002>.
Author: Srihari Jaganathan
Maintainer: Srihari Jaganathan <sriharitn@gmail.com>
Diff between foretell versions 0.1.0 dated 2019-04-01 and 0.2.0 dated 2019-04-08
foretell-0.1.0/foretell/LICENSE |only foretell-0.2.0/foretell/DESCRIPTION | 14 +++-- foretell-0.2.0/foretell/MD5 | 31 ++++++++--- foretell-0.2.0/foretell/NAMESPACE | 1 foretell-0.2.0/foretell/R/BG.R | 13 +++-- foretell-0.2.0/foretell/R/BdW.R | 17 ++++-- foretell-0.2.0/foretell/R/LCW.R | 20 +++++-- foretell-0.2.0/foretell/R/customer_retention.R |only foretell-0.2.0/foretell/R/exltrend.R |only foretell-0.2.0/foretell/R/persistency_data.R |only foretell-0.2.0/foretell/README.md | 57 +++++++++++++++++++++- foretell-0.2.0/foretell/data |only foretell-0.2.0/foretell/man/BG.Rd | 6 +- foretell-0.2.0/foretell/man/BdW.Rd | 8 +-- foretell-0.2.0/foretell/man/LCW.Rd | 8 +-- foretell-0.2.0/foretell/man/customer_retention.Rd |only foretell-0.2.0/foretell/man/exltrend.Rd |only foretell-0.2.0/foretell/man/figures |only foretell-0.2.0/foretell/man/persistency_data.Rd |only 19 files changed, 134 insertions(+), 41 deletions(-)
Title: Common Plots for Analysis
Description: Select data analysis plots, under a standardized calling interface implemented on top of 'ggplot2' and 'plotly'.
Plots of interest include: 'ROC', gain curve, scatter plot with marginal distributions,
conditioned scatter plot with marginal densities,
box and stem with matching theoretical distribution, and density with matching theoretical distribution.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between WVPlots versions 1.0.9 dated 2019-02-20 and 1.1.0 dated 2019-04-08
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- NEWS.md | 4 ++++ R/LiftCurve.R | 5 +++-- inst/doc/WVPlots_concept.html | 9 ++++++--- inst/doc/WVPlots_examples.html | 9 ++++++--- 6 files changed, 30 insertions(+), 19 deletions(-)
Title: Bayesian Analysis of Quantile Regression Models
Description: Bayesian estimation and variable selection for quantile regression models.
Author: Rahim Alhamzawi
Maintainer: Rahim Alhamzawi (University of Al-Qadisiyah) <rahim.alhamzawi@qu.edu.iq>
Diff between Brq versions 2.3 dated 2019-01-25 and 2.4 dated 2019-04-08
DESCRIPTION | 8 ++++---- MD5 | 8 ++++++-- R/BBqr.R |only R/BLBqr.R |only R/Brq.default.R | 8 +++++--- man/Qrb.Rd |only man/Qrbl.Rd |only 7 files changed, 15 insertions(+), 9 deletions(-)