Title: Read and Write CSV Files with Selected Conventions
Description: Reads and writes CSV with selected conventions.
Uses the same generic function for reading and writing to promote consistent formats.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between csv versions 0.5.2 dated 2018-01-08 and 0.5.3 dated 2019-04-24
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/csv.R | 3 +++ man/as.csv.Rd | 3 +++ man/as.csv.character.Rd | 4 ++++ man/as.csv.data.frame.Rd | 4 ++++ 6 files changed, 22 insertions(+), 8 deletions(-)
Title: Check the Properties of Common R Objects
Description: Expressive, assertive, pipe-friendly functions
to check the properties of common R objects.
In the case of failure the functions issue informative error messages.
Author: Joe Thorley [aut, cre] (<https://orcid.org/0000-0002-7683-4592>)
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between checkr versions 0.4.0 dated 2018-11-01 and 0.5.0 dated 2019-04-24
DESCRIPTION | 14 +-- MD5 | 127 ++++++++++++++++++------------------ NAMESPACE | 2 NEWS.md | 11 +++ R/attributes.R | 29 ++++++-- R/chr.R | 4 - R/classes.R | 10 +- R/colnames.R | 10 +- R/data.R | 2 R/date.R | 4 - R/dbl.R | 10 +- R/dttm.R | 4 - R/environment.R | 2 R/err.R |only R/function.R | 2 R/grepl.R | 4 - R/homogenous.R | 2 R/inherits.R | 2 R/int.R | 10 +- R/internal.R | 33 ++++++--- R/intersection.R | 4 - R/join.R | 4 - R/key.R | 18 +++-- R/length.R | 4 - R/levels.R | 10 +- R/lgl.R | 6 - R/list.R | 2 R/logical.R | 2 R/missing-colnames.R | 4 - R/missing-names.R | 4 - R/name.R |only R/named.R | 6 - R/names.R | 8 +- R/nchar.R | 2 R/ncol.R | 2 R/new-duplicated.R |only R/nlevels.R | 2 R/nrow.R | 2 R/null.R | 2 R/numeric.R | 2 R/pattern.R | 2 R/prob.R | 4 - R/props.R | 2 R/rbind.R | 9 +- R/scalar.R | 2 R/sorted.R | 2 R/tzone.R | 18 +---- R/unique.R | 2 R/unnamed.R | 2 R/utils.R | 16 ---- R/vector.R | 19 +++-- README.md | 21 +---- build/vignette.rds |binary inst/doc/assertive-programming.html | 125 ++++++++++++++++++++--------------- inst/doc/checkr-naming.html | 15 ++-- man/check_attributes.Rd | 6 + man/check_key.Rd | 5 + man/check_name.Rd |only man/check_no_attributes.Rd | 7 + man/check_tzone.Rd | 5 - man/check_vector.Rd | 8 +- tests/testthat/test-attributes.R | 20 +++++ tests/testthat/test-key.R | 20 +++++ tests/testthat/test-name.R |only tests/testthat/test-named.R | 2 tests/testthat/test-tzone.R | 4 - tests/testthat/test-vector.R | 35 +++++++++ 67 files changed, 425 insertions(+), 292 deletions(-)
Title: Accessing Data Stored in 'LaBB-CAT' Instances
Description: 'LaBB-CAT' is a web-based language corpus management
system developed by the New Zealand Institute of Language, Brain
and Behaviour (NZILBB) - see <https://labbcat.canterbury.ac.nz>.
This package defines functions for accessing corpus data in a 'LaBB-CAT'
instance. You must have at least version 20190424.1154 of 'LaBB-CAT'
to use this package.
For more information about 'LaBB-CAT', see
Robert Fromont and Jennifer Hay (2008) <doi:10.3366/E1749503208000142>
or
Robert Fromont (2017) <doi:10.1016/j.csl.2017.01.004>.
Author: Robert Fromont [aut, cre]
Maintainer: Robert Fromont <robert.fromont@canterbury.ac.nz>
Diff between nzilbb.labbcat versions 0.2-0 dated 2019-04-17 and 0.2-1 dated 2019-04-24
DESCRIPTION | 11 - MD5 | 50 ++--- NAMESPACE | 6 R/nzilbb.labbcat.R | 336 +++++++++++++++++++++++--------------- build/partial.rdb |binary man/countAnnotations.Rd | 4 man/getAnchors.Rd | 6 man/getAnnotationLabels.Rd | 14 - man/getAnnotations.Rd | 4 man/getAvailableMedia.Rd | 4 man/getCorpusIds.Rd | 9 - man/getDictionaries.Rd |only man/getDictionaryEntries.Rd |only man/getGraphIds.Rd | 9 - man/getGraphIdsInCorpus.Rd | 11 - man/getGraphIdsWithParticipant.Rd | 4 man/getId.Rd | 9 - man/getLayer.Rd | 9 - man/getLayerIds.Rd | 6 man/getLayers.Rd | 9 - man/getMatchingGraphIds.Rd | 4 man/getMedia.Rd | 4 man/getMediaTracks.Rd | 9 - man/getParticipantIds.Rd | 9 - man/getSoundFragment.Rd | 17 - man/labbcatCredentials.Rd | 3 man/nzilbb.labbcat.Rd | 14 - 27 files changed, 267 insertions(+), 294 deletions(-)
More information about nzilbb.labbcat at CRAN
Permanent link
Title: Predicting Economic Variables using Dynamic Factor Models
Description: It contains the tools to implement dynamic factor models to forecast economic variables. The user will be able to construct pseudo real time vintages, use information criteria for determining the number of factors and shocks, estimate the model, and visualize results among other things.
Author: Daiane Marcolino de Mattos [aut, cre],
Pedro Costa Ferreira [aut],
Serge de Valk [aut],
Guilherme Branco Gomes [aut]
Maintainer: Daiane Marcolino de Mattos <daiane.mattos@fgv.br>
Diff between nowcasting versions 1.0.0 dated 2018-11-27 and 1.1.0 dated 2019-04-24
DESCRIPTION | 8 MD5 | 45 - NAMESPACE | 100 +-- R/Bpanel.R | 302 +++++------ R/NYFED.R |only R/method_2s.R | 1240 ++++++++++++++++++++++++------------------------- R/method_EM.r | 235 ++++----- R/nowcast.R | 438 +++++++++-------- R/nowcast.plot.R | 4 data/NYFED.rda |only man/BRGDP.Rd | 44 - man/Bpanel.Rd | 130 ++--- man/ICfactors.Rd | 54 +- man/ICshocks.Rd | 62 +- man/NYFED.Rd |only man/PRTDB.Rd | 50 - man/RTDB.Rd | 62 +- man/USGDP.Rd | 50 - man/USGDPshort.Rd | 50 - man/base_extraction.Rd | 84 +-- man/month2qtr.Rd | 56 +- man/nowcast.Rd | 173 +++--- man/nowcast.plot.Rd | 82 +-- man/nowcasting.Rd | 68 +- man/qtr2month.Rd | 52 +- 25 files changed, 1703 insertions(+), 1686 deletions(-)
Title: R Client for GESIS Data Catalogue (DBK)
Description: Provides programmatic access to the GESIS - Leibniz-Institute for
the Social Sciences Data Catalogue/Datenbestandkatalog (DBK), which
maintains a large repository of data sets related to the social sciences.
See <http://www.gesis.org> for more information.
Author: Eric Persson [aut, cre]
Maintainer: Eric Persson <expersso5@gmail.com>
Diff between gesis versions 0.2.1 dated 2017-01-30 and 0.2.2 dated 2019-04-24
DESCRIPTION | 12 - MD5 | 18 +- R/gesis.R | 12 + build/vignette.rds |binary inst/doc/gesis.html | 368 ++++++++++++++++++++++++++++++++++++++--------- man/download_codebook.Rd | 1 man/download_dataset.Rd | 1 man/get_datasets.Rd | 1 man/get_study_groups.Rd | 3 man/login.Rd | 3 10 files changed, 327 insertions(+), 92 deletions(-)
Title: A XML-Based Testing Framework for Automated Component Tests of R
Packages
Description: This provides a framework for R packages developed for
a regulatory environment. It is based on the 'testthat' unit testing system and provides the adapter
functionalities for XML-based test case definition as well as for standardized
reporting of the test results.
Author: Sebastian Wolf [aut, cre],
Matthias Pfeifer [aut, ctb],
Sergej Potapov [ctb],
Roche [cph, fnd]
Maintainer: Sebastian Wolf <sebastian@mail-wolf.de>
Diff between RTest versions 1.2.3 dated 2019-01-02 and 1.2.4 dated 2019-04-24
RTest-1.2.3/RTest/man/as.expectation.logical.Rd |only RTest-1.2.3/RTest/man/show-RTestCollection-method.Rd |only RTest-1.2.4/RTest/DESCRIPTION | 10 RTest-1.2.4/RTest/MD5 | 125 RTest-1.2.4/RTest/NAMESPACE | 252 RTest-1.2.4/RTest/R/RTest-package.R | 87 RTest-1.2.4/RTest/R/RTestCase.R | 4138 +++++----- RTest-1.2.4/RTest/R/RTestCase.test-adapter.R | 558 - RTest-1.2.4/RTest/R/RTestCollection.R | 1876 ++-- RTest-1.2.4/RTest/R/utils.R | 9 RTest-1.2.4/RTest/R/utils.test.R | 3792 ++++----- RTest-1.2.4/RTest/R/utils.testthat.R | 337 RTest-1.2.4/RTest/R/utils.xmlRead.R | 3 RTest-1.2.4/RTest/build/vignette.rds |binary RTest-1.2.4/RTest/inst/ChangeLog.txt | 341 RTest-1.2.4/RTest/inst/doc/RTest-test-adapter.R | 190 RTest-1.2.4/RTest/inst/doc/RTest-test-adapter.pdf |binary RTest-1.2.4/RTest/inst/doc/RTest.R | 50 RTest-1.2.4/RTest/inst/doc/RTest.pdf |binary RTest-1.2.4/RTest/inst/xml-templates/test.RTM.xml | 238 RTest-1.2.4/RTest/inst/xml-templates/test.execCache.xml | 232 RTest-1.2.4/RTest/inst/xml-templates/test.execCache2.xml | 96 RTest-1.2.4/RTest/inst/xml-templates/test.large.xml | 2436 ++--- RTest-1.2.4/RTest/inst/xml-templates/test.testthat.xml | 90 RTest-1.2.4/RTest/man/RTest.Rd | 62 RTest-1.2.4/RTest/man/RTest.execute.Rd | 6 RTest-1.2.4/RTest/man/RTestCase-class.Rd | 124 RTest-1.2.4/RTest/man/RTestCase.Rd | 258 RTest-1.2.4/RTest/man/RTestCollection.Rd |only RTest-1.2.4/RTest/man/arguments_creator.Rd | 70 RTest-1.2.4/RTest/man/clearTest.Rd | 54 RTest-1.2.4/RTest/man/exec.Rd | 124 RTest-1.2.4/RTest/man/execAdapter.Rd | 90 RTest-1.2.4/RTest/man/execCache.Rd | 102 RTest-1.2.4/RTest/man/expect_less_more.Rd |only RTest-1.2.4/RTest/man/generic.Rd | 108 RTest-1.2.4/RTest/man/getExecDetails.html.Rd | 60 RTest-1.2.4/RTest/man/getExecStates.Rd | 56 RTest-1.2.4/RTest/man/getRTM.Rd | 60 RTest-1.2.4/RTest/man/getRTMInMatrixShape.Rd | 72 RTest-1.2.4/RTest/man/getRTMInfos.Rd | 68 RTest-1.2.4/RTest/man/getValidTCs.Rd | 56 RTest-1.2.4/RTest/man/importTCsFromDir.Rd | 64 RTest-1.2.4/RTest/man/quasi_capture.Rd | 54 RTest-1.2.4/RTest/man/readXMLInputData.Rd | 84 RTest-1.2.4/RTest/man/show.Rd |only RTest-1.2.4/RTest/man/summary-RTestCollection-method.Rd | 48 RTest-1.2.4/RTest/man/test.Rd | 116 RTest-1.2.4/RTest/man/test_execution.Rd | 112 RTest-1.2.4/RTest/man/test_manualCheck_confirmWindow.Rd | 66 RTest-1.2.4/RTest/man/test_manualCheck_file.Rd | 66 RTest-1.2.4/RTest/man/test_returnValue_any.Rd | 56 RTest-1.2.4/RTest/man/test_returnValue_data.frame_cellbycell.Rd | 58 RTest-1.2.4/RTest/man/test_returnValue_data.frame_shape.Rd | 162 RTest-1.2.4/RTest/man/test_returnValue_image.Rd | 122 RTest-1.2.4/RTest/man/test_returnValue_list_nodebynode.Rd | 58 RTest-1.2.4/RTest/man/test_returnValue_variable.Rd | 120 RTest-1.2.4/RTest/man/test_returnValue_vector_elementbyelement.Rd | 118 RTest-1.2.4/RTest/man/writeExecSummary.html.Rd | 76 RTest-1.2.4/RTest/tests/testthat/test.1.read.R | 35 RTest-1.2.4/RTest/tests/testthat/test.RTestCase.R | 190 RTest-1.2.4/RTest/tests/testthat/test.RTestCollection.R | 660 - RTest-1.2.4/RTest/tests/testthat/test.testthat.R | 436 - RTest-1.2.4/RTest/tests/testthat/test.utils.test.R | 1890 ++-- RTest-1.2.4/RTest/tests/testthat/test.utils.test.df.R | 1384 +-- RTest-1.2.4/RTest/tests/testthat/test.utils.test.list.R | 528 - 66 files changed, 11449 insertions(+), 11284 deletions(-)
Title: Supplemental Functions and Datasets for "Handbook of Regression
Methods"
Description: Supplement for the book "Handbook of Regression Methods" by D. S. Young. Some datasets used in the book are included and documented. Wrapper functions are included that simplify the examples in the textbook, such as code for constructing a regressogram and expanding ANOVA tables to reflect the total sum of squares.
Author: Derek S. Young [aut, cre]
Maintainer: Derek S. Young <derek.young@uky.edu>
Diff between HoRM versions 0.1.1 dated 2017-03-12 and 0.1.2 dated 2019-04-24
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 5 +++++ data/JamesBond.RData |binary man/HoRM.package.Rd | 4 ++-- 5 files changed, 15 insertions(+), 10 deletions(-)
Title: A Fast, Easy-to-Use Database Interface
Description: Provides select, insert, update, upsert, and delete database operations. Supports 'PostgreSQL', 'MySQL', 'SQLite', and more, and plays nicely with the 'DBI' package.
Author: Andrew Kane [aut, cre]
Maintainer: Andrew Kane <andrew@chartkick.com>
Diff between dbx versions 0.2.4 dated 2019-01-03 and 0.2.5 dated 2019-04-24
DESCRIPTION | 8 ++++---- LICENSE | 2 +- MD5 | 24 ++++++++++++------------ NEWS.md | 6 ++++++ R/connect.R | 14 +++++++++----- R/helpers.R | 10 +++++----- R/select.R | 14 +++++++------- R/update.R | 4 ++-- R/upsert.R | 2 +- README.md | 26 ++++++++++++++++++-------- tests/testthat/helper-run-select-tests.R | 10 ++++++++++ tests/testthat/helper-run-update-tests.R | 22 ++++++++++++++++++++++ tests/testthat/helper-run-upsert-tests.R | 3 +++ 13 files changed, 100 insertions(+), 45 deletions(-)
Title: Canadian Forest Fire Danger Rating System
Description: This project provides a group of new functions to calculate the
outputs of the two main components of the Canadian Forest Fire Danger Rating
System (CFFDRS) at various time scales: the Fire Weather Index (FWI) System and
the Fire Behaviour Prediction (FBP) System. Some functions have two versions,
table and raster based.
Author: Xianli Wang, Alan Cantin, Marc-André Parisien, Mike Wotton, Kerry
Anderson, Brett Moore, Tom Schiks, and Mike Flannigan
Maintainer: Alan Cantin <Alan.Cantin@Canada.ca>
Diff between cffdrs versions 1.8.4 dated 2018-12-19 and 1.8.5 dated 2019-04-24
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- R/dcCalc.R | 6 ++++-- man/cffdrs-package.Rd | 4 ++-- 4 files changed, 15 insertions(+), 13 deletions(-)
Title: Bayesian Whole-Genome Regression
Description: Whole-genome regression methods on Bayesian framework fitted via EM
or Gibbs sampling, with optional kernel term and sampling techniques as described
by Xavier (2017) <doi:10.1186/s12859-017-1582-3>.
Author: Alencar Xavier, William Muir, Shizhong Xu, Katy Rainey.
Maintainer: Alencar Xavier <alenxav@gmail.com>
Diff between bWGR versions 1.6.2 dated 2019-04-10 and 1.6.3 dated 2019-04-24
DESCRIPTION | 8 - MD5 | 16 +-- R/RcppExports.R | 262 ++++++++++++++++++++++++++-------------------------- R/mix.R | 185 ++++++++++++++++++++++-------------- R/wgr.R | 34 ++++++ demo/mixedmodel.R | 8 - man/bWGR.Rd | 4 man/mix.Rd | 1 src/wgr20190410.cpp | 3 9 files changed, 301 insertions(+), 220 deletions(-)
Title: Analysis of Data with Mixed Measurement Error and
Misclassification in Covariates
Description: Implementation of the augmented
Simulation-Extrapolation (SIMEX) algorithm proposed by Yi et al. (2015) <doi:10.1080/01621459.2014.922777>
for analyzing the data with mixed measurement error and misclassification. The main
function provides a similar summary output as that of glm() function. Both parametric and
empirical SIMEX are considered in the package.
Author: Qihuang Zhang <qihuang.zhang@uwaterloo.ca>, Grace Y. Yi <yyi@uwaterloo.ca>
Maintainer: Qihuang Zhang <qihuang.zhang@uwaterloo.ca>
Diff between augSIMEX versions 3.1 dated 2018-11-05 and 3.7.2 dated 2019-04-24
DESCRIPTION | 11 ++--- MD5 | 16 +++---- NAMESPACE | 3 + R/SIMEX_functions.R | 5 +- R/augSIMEX.R | 97 +++++++++++++++++++++++++++++++++++++---------- man/augSIMEX.Rd | 22 +++++++--- src/scoregaussiancpp.cpp | 27 +++---------- src/scorelogitcpp.cpp | 12 ----- src/scoreprobitcpp.cpp | 6 +- 9 files changed, 125 insertions(+), 74 deletions(-)
Title: Calculates Disproportionate Impact When Binary Success Data are
Disaggregated by Subgroups
Description: Implements methods for calculating disproportionate impact: the percentage point gap, proportionality index, and the 80% index.
California Community Colleges Chancellor's Office (2017). Percentage Point Gap Method. <http://extranet.cccco.edu/Portals/1/TRIS/Research/Analysis/PercentagePointGapMethod2017.pdf>.
California Community Colleges Chancellor's Office (2014). Guidelines for Measuring Disproportionate Impact in Equity Plans. <http://extranet.cccco.edu/Portals/1/TRIS/Research/Accountability/GUIDELINES%20FOR%20MEASURING%20DISPROPORTIONATE%20IMPACT%20IN%20EQUITY%20PLANS.pdf>.
Author: Vinh Nguyen [aut, cre]
Maintainer: Vinh Nguyen <nguyenvq714@gmail.com>
Diff between DisImpact versions 0.0.3 dated 2018-07-11 and 0.0.4 dated 2019-04-24
DESCRIPTION | 8 - MD5 | 19 +- NEWS |only R/percentage_point_gap.R | 32 +++- build/vignette.rds |binary inst/doc/Tutorial.R | 5 inst/doc/Tutorial.Rmd | 319 ++++++++++++++++++++++++----------------------- inst/doc/Tutorial.html | 79 +++++++---- man/di_ppg.Rd | 21 +-- man/ppg_moe.Rd | 9 + vignettes/Tutorial.Rmd | 319 ++++++++++++++++++++++++----------------------- 11 files changed, 439 insertions(+), 372 deletions(-)
Title: Downloads and Organizes Financial Data for Multiple Tickers
Description: Makes it easy to download a large number of trade data from Yahoo Finance <https://finance.yahoo.com/>.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Diff between BatchGetSymbols versions 2.5 dated 2019-04-15 and 2.5.2 dated 2019-04-24
DESCRIPTION | 8 MD5 | 16 - NAMESPACE | 1 NEWS.md | 8 R/BatchGetSymbols.R | 6 R/GetFTSE100Stocks.R |only R/GetSP500Stocks.R | 3 R/Get_Ibov_Stocks.R | 3 inst/doc/BatchGetSymbols-vignette.html | 366 +++++++++++++++++++++++++-------- man/GetFTSE100Stocks.Rd |only 10 files changed, 317 insertions(+), 94 deletions(-)
More information about BatchGetSymbols at CRAN
Permanent link
Title: Geostatistical Modelling of Spatially Referenced Prevalence Data
Description: Provides functions for both likelihood-based
and Bayesian analysis of spatially referenced prevalence data, and is
also an extension of the 'geoR' package.
Author: Emanuele Giorgi, Peter J. Diggle
Maintainer: Emanuele Giorgi <e.giorgi@lancaster.ac.uk>
Diff between PrevMap versions 1.4.2 dated 2018-07-11 and 1.5 dated 2019-04-24
PrevMap-1.4.2/PrevMap/inst/CITATION |only PrevMap-1.5/PrevMap/DESCRIPTION | 13 PrevMap-1.5/PrevMap/MD5 | 74 PrevMap-1.5/PrevMap/NAMESPACE | 24 PrevMap-1.5/PrevMap/R/foo.R |23896 +++++----- PrevMap-1.5/PrevMap/inst/doc/PrevMap.pdf | 4240 - PrevMap-1.5/PrevMap/man/Laplace.sampling.lr.Rd | 4 PrevMap-1.5/PrevMap/man/binary.probit.Bayes.Rd | 5 PrevMap-1.5/PrevMap/man/binomial.logistic.Bayes.Rd | 17 PrevMap-1.5/PrevMap/man/binomial.logistic.MCML.Rd | 2 PrevMap-1.5/PrevMap/man/contour.pred.PrevMap.Rd | 3 PrevMap-1.5/PrevMap/man/control.mcmc.Bayes.Rd | 15 PrevMap-1.5/PrevMap/man/control.mcmc.Bayes.SPDE.Rd | 8 PrevMap-1.5/PrevMap/man/control.prior.Rd | 7 PrevMap-1.5/PrevMap/man/glgm.LA.Rd |only PrevMap-1.5/PrevMap/man/linear.model.Bayes.Rd | 6 PrevMap-1.5/PrevMap/man/linear.model.MLE.Rd | 7 PrevMap-1.5/PrevMap/man/lm.ps.MCML.Rd | 9 PrevMap-1.5/PrevMap/man/plot.PrevMap.diagnostic.Rd |only PrevMap-1.5/PrevMap/man/plot.pred.PrevMap.Rd | 3 PrevMap-1.5/PrevMap/man/plot.pred.PrevMap.ps.Rd | 4 PrevMap-1.5/PrevMap/man/point.map.Rd |only PrevMap-1.5/PrevMap/man/poisson.log.MCML.Rd | 10 PrevMap-1.5/PrevMap/man/spat.corr.diagnostic.Rd |only PrevMap-1.5/PrevMap/man/spatial.pred.binomial.Bayes.Rd | 4 PrevMap-1.5/PrevMap/man/spatial.pred.binomial.MCML.Rd | 7 PrevMap-1.5/PrevMap/man/spatial.pred.linear.Bayes.Rd | 6 PrevMap-1.5/PrevMap/man/spatial.pred.linear.MLE.Rd | 14 PrevMap-1.5/PrevMap/man/spatial.pred.poisson.MCML.Rd | 9 PrevMap-1.5/PrevMap/man/trend.plot.Rd |only PrevMap-1.5/PrevMap/man/variog.diagnostic.glgm.Rd |only PrevMap-1.5/PrevMap/man/variog.diagnostic.lm.Rd |only PrevMap-1.5/PrevMap/man/variogram.Rd |only PrevMap-1.5/PrevMap/vignettes/Images/acf_loaloa-min.png |only PrevMap-1.5/PrevMap/vignettes/Images/acf_loaloa.png |binary PrevMap-1.5/PrevMap/vignettes/Images/autocorrelogram.png |binary PrevMap-1.5/PrevMap/vignettes/Images/data_sim_pred.png |binary PrevMap-1.5/PrevMap/vignettes/Images/diagnostic.png |binary PrevMap-1.5/PrevMap/vignettes/Images/loaloa1.png |binary PrevMap-1.5/PrevMap/vignettes/Images/loaloa_pred.png |binary PrevMap-1.5/PrevMap/vignettes/Images/loaloa_profile.png |binary PrevMap-1.5/PrevMap/vignettes/Images/loaloa_profile_kappa.png |binary PrevMap-1.5/PrevMap/vignettes/Images/sim_loc.png |binary 43 files changed, 14775 insertions(+), 13612 deletions(-)
Title: Iterated Racing for Automatic Algorithm Configuration
Description: Iterated race is an extension of the Iterated F-race method for
the automatic configuration of optimization algorithms, that is,
(offline) tuning their parameters by finding the most appropriate
settings given a set of instances of an optimization problem.
Author: Manuel López-Ibáñez [aut, cre]
(<https://orcid.org/0000-0001-9974-1295>),
Jérémie Dubois-Lacoste [aut],
Leslie Pérez Cáceres [aut],
Thomas Stützle [aut],
Mauro Birattari [aut],
Eric Yuan [ctb],
Prasanna Balaprakash [ctb]
Maintainer: Manuel López-Ibáñez <manuel.lopez-ibanez@manchester.ac.uk>
Diff between irace versions 3.1 dated 2018-07-12 and 3.2 dated 2019-04-24
irace-3.1/irace/inst/examples/target-runner-python/target-runner.py |only irace-3.1/irace/tests/configurations.txt |only irace-3.1/irace/tests/forbidden.txt |only irace-3.1/irace/tests/logparameters.txt |only irace-3.1/irace/tests/parameters.txt |only irace-3.1/irace/tests/test-targetRunnerParallel.R |only irace-3.1/irace/tests/testcapping.R |only irace-3.1/irace/tests/testmisc.R |only irace-3.1/irace/tests/testtargeval.R |only irace-3.1/irace/tests/testtime.R |only irace-3.1/irace/tests/train-instances.txt |only irace-3.2/irace/.Rinstignore | 1 irace-3.2/irace/DESCRIPTION | 10 irace-3.2/irace/MD5 | 127 +-- irace-3.2/irace/NAMESPACE | 1 irace-3.2/irace/NEWS | 87 +- irace-3.2/irace/R/ablation.R | 41 - irace-3.2/irace/R/generation.R | 222 ++--- irace-3.2/irace/R/irace-options.R | 23 irace-3.2/irace/R/irace.R | 82 +- irace-3.2/irace/R/main.R | 66 - irace-3.2/irace/R/model.R | 63 - irace-3.2/irace/R/parameterExploration.R | 3 irace-3.2/irace/R/race-wrapper.R | 138 ++- irace-3.2/irace/R/race.R | 141 +-- irace-3.2/irace/R/readConfiguration.R | 116 +- irace-3.2/irace/R/readParameters.R | 60 + irace-3.2/irace/R/testing.R | 10 irace-3.2/irace/R/utils.R | 97 +- irace-3.2/irace/R/version.R | 2 irace-3.2/irace/build/partial.rdb |binary irace-3.2/irace/build/vignette.rds |binary irace-3.2/irace/inst/doc/irace-package.R | 31 irace-3.2/irace/inst/doc/irace-package.Rnw | 107 +- irace-3.2/irace/inst/doc/irace-package.pdf |binary irace-3.2/irace/inst/examples/batchmode-cluster/target-evaluator | 4 irace-3.2/irace/inst/examples/hypervolume/target-evaluator | 4 irace-3.2/irace/inst/examples/target-runner-python/target-runner-acotsp.py |only irace-3.2/irace/inst/examples/target-runner-python/target-runner-advanced.py | 4 irace-3.2/irace/inst/examples/target-runner-python/trivial |only irace-3.2/irace/inst/exdata/irace-acotsp.Rdata |binary irace-3.2/irace/inst/exdata/sann.rda |binary irace-3.2/irace/inst/templates/scenario.txt.tmpl | 4 irace-3.2/irace/inst/templates/windows/target-runner.bat | 28 irace-3.2/irace/man/ablation.Rd | 5 irace-3.2/irace/man/checkIraceScenario.Rd | 4 irace-3.2/irace/man/defaultScenario.Rd | 1 irace-3.2/irace/man/getConfigurationByIteration.Rd | 4 irace-3.2/irace/man/readParameters.Rd | 20 irace-3.2/irace/man/scenario.update.paths.Rd |only irace-3.2/irace/man/target.evaluator.default.Rd | 28 irace-3.2/irace/man/target.runner.default.Rd | 24 irace-3.2/irace/man/testConfigurations.Rd | 8 irace-3.2/irace/man/testing.main.Rd | 17 irace-3.2/irace/tests/testthat/bug_large_new_instances-confs.txt |only irace-3.2/irace/tests/testthat/bug_large_new_instances.Rdata |only irace-3.2/irace/tests/testthat/common.R |only irace-3.2/irace/tests/testthat/configurations.txt |only irace-3.2/irace/tests/testthat/dummy_wrapper.py |only irace-3.2/irace/tests/testthat/forbidden.txt |only irace-3.2/irace/tests/testthat/logparameters.txt |only irace-3.2/irace/tests/testthat/parameters.txt |only irace-3.2/irace/tests/testthat/test-GenericWrapper4AC.R |only irace-3.2/irace/tests/testthat/test-bugs.R |only irace-3.2/irace/tests/testthat/test-capping.R |only irace-3.2/irace/tests/testthat/test-forbidden.R |only irace-3.2/irace/tests/testthat/test-maxTime.R |only irace-3.2/irace/tests/testthat/test-path.R | 2 irace-3.2/irace/tests/testthat/test-sann-irace.R |only irace-3.2/irace/tests/testthat/test-similar.R | 2 irace-3.2/irace/tests/testthat/test-targetRunnerParallel.R |only irace-3.2/irace/tests/testthat/test-targeteval.R |only irace-3.2/irace/vignettes/NEWS.txt | 87 +- irace-3.2/irace/vignettes/examples.Rdata |binary irace-3.2/irace/vignettes/irace-acotsp-stdout.txt | 402 ++++------ irace-3.2/irace/vignettes/irace-acotsp.Rdata |binary irace-3.2/irace/vignettes/irace-package.Rnw | 107 +- irace-3.2/irace/vignettes/log-ablation.Rdata |binary irace-3.2/irace/vignettes/section/irace-options.tex | 3 79 files changed, 1217 insertions(+), 969 deletions(-)
Title: Item Maker
Description: This is an Automatic Item Generator for Psychological Assessment. Items created with the 'IMak' package should not be used in applied settings as part of the working protocol without ensuring first that the items meet the required psychometric quality standards (see Blum & Holling, 2018) <DOI:10.3389/fpsyg.2018.01286>.
Author: Diego Blum [aut, cre]
Maintainer: Diego Blum <blumworx@gmail.com>
Diff between IMak versions 1.2.1 dated 2018-08-06 and 1.2.2 dated 2019-04-24
IMak-1.2.1/IMak/man/IMak.Rd |only IMak-1.2.2/IMak/DESCRIPTION | 10 +++++----- IMak-1.2.2/IMak/MD5 | 12 ++++++------ IMak-1.2.2/IMak/R/buildfa.R | 2 +- IMak-1.2.2/IMak/R/plotfa.R | 8 ++++---- IMak-1.2.2/IMak/inst |only IMak-1.2.2/IMak/man/build_fa.Rd | 13 +++++++------ IMak-1.2.2/IMak/man/plot_fa.Rd | 15 ++++++++------- 8 files changed, 31 insertions(+), 29 deletions(-)
Title: Polynomials in R
Description: Implements univariate polynomial operations in R, including
polynomial arithmetic, finding zeros, plotting, and some operations on
lists of polynomials.
Author: Bill Venables, with contribution by Kurt Hornik and Georgi Boshnakov
Maintainer: Bill Venables <Bill.Venables@gmail.com>
Diff between PolynomF versions 1.1-0 dated 2019-03-28 and 2.0-0 dated 2019-04-24
PolynomF-1.1-0/PolynomF/man/change.origin.Rd |only PolynomF-1.1-0/PolynomF/man/poly.calc.Rd |only PolynomF-1.1-0/PolynomF/man/poly.orth.Rd |only PolynomF-2.0-0/PolynomF/DESCRIPTION | 10 PolynomF-2.0-0/PolynomF/MD5 | 47 +-- PolynomF-2.0-0/PolynomF/NAMESPACE | 31 ++ PolynomF-2.0-0/PolynomF/R/Orthogonal_polynomials.R |only PolynomF-2.0-0/PolynomF/R/PolynomF.R | 252 +++++++++++--------- PolynomF-2.0-0/PolynomF/inst/doc/polynomials.R | 122 ++++++--- PolynomF-2.0-0/PolynomF/inst/doc/polynomials.Rmd | 207 ++++++++++------ PolynomF-2.0-0/PolynomF/inst/doc/polynomials.pdf |binary PolynomF-2.0-0/PolynomF/man/GCD.Rd | 4 PolynomF-2.0-0/PolynomF/man/GroupGenerics.Rd | 2 PolynomF-2.0-0/PolynomF/man/LCM.Rd | 4 PolynomF-2.0-0/PolynomF/man/Ops.polynom.Rd | 2 PolynomF-2.0-0/PolynomF/man/as.character.polynom.Rd | 2 PolynomF-2.0-0/PolynomF/man/as.function.polynom.Rd | 2 PolynomF-2.0-0/PolynomF/man/change_origin.Rd |only PolynomF-2.0-0/PolynomF/man/coef.polynom.Rd | 2 PolynomF-2.0-0/PolynomF/man/plot.polynom.Rd | 2 PolynomF-2.0-0/PolynomF/man/poly_calc.Rd |only PolynomF-2.0-0/PolynomF/man/poly_orth.Rd |only PolynomF-2.0-0/PolynomF/man/poly_orth_general.Rd |only PolynomF-2.0-0/PolynomF/man/polynom.Rd | 19 + PolynomF-2.0-0/PolynomF/man/solve.polynom.Rd | 2 PolynomF-2.0-0/PolynomF/man/summary.polynom.Rd | 2 PolynomF-2.0-0/PolynomF/man/tangent.Rd | 2 PolynomF-2.0-0/PolynomF/man/zap.Rd |only PolynomF-2.0-0/PolynomF/vignettes/polynomials.Rmd | 207 ++++++++++------ 29 files changed, 592 insertions(+), 329 deletions(-)
Title: MCMC Generalised Linear Mixed Models
Description: MCMC Generalised Linear Mixed Models.
Author: Jarrod Hadfield
Maintainer: Jarrod Hadfield <j.hadfield@ed.ac.uk>
Diff between MCMCglmm versions 2.28 dated 2019-02-08 and 2.29 dated 2019-04-24
DESCRIPTION | 8 - MD5 | 146 ++++++++++----------- R/MCMCglmm.R | 255 +++++++++++++++++++------------------- R/buildZ.R | 10 - R/predict.MCMCglmm.R | 2 inst/doc/CourseNotes.Rnw | 2 inst/doc/CourseNotes.pdf |binary inst/doc/Overview.pdf |binary vignettes/CourseNotes.Rnw | 2 vignettes/Figures/CourseNotes.Rnw | 2 vignettes/Figures/buildCN.R | 6 vignettes/Lecture1-006.pdf |binary vignettes/Lecture1-011.pdf |binary vignettes/Lecture1-015.pdf |binary vignettes/Lecture1-023.pdf |binary vignettes/Lecture1-027.pdf |binary vignettes/Lecture1-034.pdf |binary vignettes/Lecture1-041.pdf | 4 vignettes/Lecture1-049.pdf |binary vignettes/Lecture1-052.pdf |binary vignettes/Lecture1-055.pdf |binary vignettes/Lecture1-058.pdf |binary vignettes/Lecture1-060.pdf |binary vignettes/Lecture1-065.pdf |binary vignettes/Lecture1-071.pdf |binary vignettes/Lecture1-075.pdf |binary vignettes/Lecture2-007.pdf |binary vignettes/Lecture2-019.pdf |binary vignettes/Lecture2-023.pdf |binary vignettes/Lecture2-029.pdf |binary vignettes/Lecture2-030.pdf |binary vignettes/Lecture2-037.pdf |binary vignettes/Lecture2-038.pdf |binary vignettes/Lecture2-046.pdf |binary vignettes/Lecture2-050.pdf |binary vignettes/Lecture2-052.pdf |binary vignettes/Lecture2-055.pdf |binary vignettes/Lecture2-066.pdf |binary vignettes/Lecture2-068.pdf |binary vignettes/Lecture2-070.pdf |binary vignettes/Lecture2-072.pdf |binary vignettes/Lecture2-074.pdf |binary vignettes/Lecture2-081.pdf |binary vignettes/Lecture2-085.pdf |binary vignettes/Lecture2.tex | 4 vignettes/Lecture3-005.pdf |binary vignettes/Lecture3-018.pdf |binary vignettes/Lecture3-025.pdf |binary vignettes/Lecture3-028.pdf |binary vignettes/Lecture4-005.pdf |binary vignettes/Lecture4-011.pdf |binary vignettes/Lecture4-014.pdf |binary vignettes/Lecture4-017.pdf |binary vignettes/Lecture4-022.pdf |binary vignettes/Lecture4-026.pdf |binary vignettes/Lecture4-030.pdf |binary vignettes/Lecture4-034.pdf |binary vignettes/Lecture4-037.pdf |binary vignettes/Lecture4-040.pdf |binary vignettes/Lecture4.tex | 2 vignettes/Lecture5-011.pdf |binary vignettes/Lecture5-016.pdf | 4 vignettes/Lecture5-024.pdf |binary vignettes/Lecture5-029.pdf |binary vignettes/Lecture5-039.pdf |binary vignettes/Lecture5-043.pdf |binary vignettes/Lecture5-046.pdf |binary vignettes/Lecture6-006.pdf |binary vignettes/Lecture8-005.pdf |binary vignettes/Lecture8-012.pdf |binary vignettes/Lecture8-015.pdf |binary vignettes/Lecture8-018.pdf |binary vignettes/Lecture8-021.pdf |binary vignettes/Lecture8-023.pdf |binary 74 files changed, 228 insertions(+), 219 deletions(-)
Title: Nonparametric Estimation for Interval-Grouped Data
Description: Kernel density and distribution estimation for interval-grouped data (Reyes, Francisco-Fernandez and Cao 2016, 2017) <doi:10.1080/10485252.2016.1163348>, <doi:10.1007/s11749-017-0523-9>, (Gonzalez-Andujar, Francisco-Fernandez, Cao, Reyes, Urbano, Forcella and Bastida 2016) <doi:10.1111/wre.12216>
and nonparametric estimation of seedling emergence indices (Cao, Francisco-Fernandez, Anand, Bastida and Gonzalez-Andujar 2011) <doi:10.1017/S002185961100030X>.
Author: Daniel Barreiro Ures, Basilio B. Fraguela, Ramón Doallo Biempica, Ricardo Cao, Mario Francisco-Fernández, Miguel Reyes
Maintainer: Daniel Barreiro Ures <dbu5293@gmail.com>
Diff between binnednp versions 0.2.0 dated 2018-10-24 and 0.3.0 dated 2019-04-24
DESCRIPTION | 10 ++++---- MD5 | 16 +++++++----- NAMESPACE | 13 +++++++--- R/RcppExports.R | 56 ++++++++++++++++++++++----------------------- R/anv.binned.R |only build/partial.rdb |binary man/anv.binned.Rd |only man/bw.dens.binned.Rd | 3 +- man/bw.dist.binned.Rd | 6 ++-- man/bw.dist.binned.boot.Rd | 4 +-- 10 files changed, 58 insertions(+), 50 deletions(-)
Title: Interface to Geometry Engine - Open Source ('GEOS')
Description: Interface to Geometry Engine - Open Source ('GEOS') using the C 'API' for topology operations on geometries. The 'GEOS' library is external to the package, and, when installing the package from source, must be correctly installed first. Windows and Mac Intel OS X binaries are provided on 'CRAN'.
Author: Roger Bivand [cre, aut] (<https://orcid.org/0000-0003-2392-6140>),
Colin Rundel [aut],
Edzer Pebesma [ctb],
Rainer Stuetz [ctb],
Karl Ove Hufthammer [ctb],
Patrick Giraudoux [ctb],
Martin Davis [cph, ctb],
Sandro Santilli [cph, ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgeos versions 0.4-2 dated 2018-11-08 and 0.4-3 dated 2019-04-24
rgeos-0.4-2/rgeos/man/bbox2SP.rd |only rgeos-0.4-3/rgeos/ChangeLog | 62 +++++++++++++++++++++++++++ rgeos-0.4-3/rgeos/DESCRIPTION | 15 +++--- rgeos-0.4-3/rgeos/MD5 | 30 ++++++------- rgeos-0.4-3/rgeos/R/rgeos_buffer.R | 2 rgeos-0.4-3/rgeos/configure | 58 ++++++++++++++++++++----- rgeos-0.4-3/rgeos/configure.ac | 32 ++++++++++++- rgeos-0.4-3/rgeos/inst/ChangeLog | 62 +++++++++++++++++++++++++++ rgeos-0.4-3/rgeos/inst/SVN_VERSION | 2 rgeos-0.4-3/rgeos/man/bbox2SP.Rd |only rgeos-0.4-3/rgeos/man/linref-gInterpolate.Rd | 7 +-- rgeos-0.4-3/rgeos/man/linref-gProject.Rd | 7 +-- rgeos-0.4-3/rgeos/man/misc-gBuffer.Rd | 1 rgeos-0.4-3/rgeos/man/misc-gNearestPoints.Rd | 7 --- rgeos-0.4-3/rgeos/man/pred-unary-gIsValid.Rd | 2 rgeos-0.4-3/rgeos/src/Makevars.win | 15 +++--- rgeos-0.4-3/rgeos/tools/winlibs.R | 8 ++- 17 files changed, 247 insertions(+), 63 deletions(-)
Title: Simulating and Analyzing Time to Event Data in the Presence of
Population Mortality
Description: Implements two methods: a nonparametric risk adjustment and a
data imputation method that use general population mortality tables to allow a
correct analysis of time to disease recurrence. Also includes a powerful set of
object oriented survival data simulation functions.
Author: Tomaz Stupnik [aut, cre],
Maja Pohar Perme [ctb]
Maintainer: Tomaz Stupnik <tomaz.stupnik@guest.arnes.si>
Diff between missDeaths versions 2.5 dated 2017-05-14 and 2.5.1 dated 2019-04-24
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/Makevars | 5 +---- 3 files changed, 7 insertions(+), 10 deletions(-)
Title: Management of Survey Data and Presentation of Analysis Results
Description: An infrastructure for the management of survey data including
value labels, definable missing values, recoding of variables,
production of code books, and import of (subsets of) 'SPSS' and
'Stata' files is provided. Further, the package allows to produce
tables and data frames of arbitrary descriptive statistics and
(almost) publication-ready tables of regression model
estimates, which can be exported to 'LaTeX' and HTML.
Author: Martin Elff (with contributions from Christopher N. Lawrence, Dave Atkins, Jason W. Morgan, Achim Zeileis)
Maintainer: Martin Elff <memisc@elff.eu>
Diff between memisc versions 0.99.17.1 dated 2019-03-18 and 0.99.17.2 dated 2019-04-24
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/Makevars | 1 - 3 files changed, 5 insertions(+), 6 deletions(-)
Title: Automated Cleaning of Occurrence Records from Biological
Collections
Description: Automated flagging of common spatial and temporal errors in biological and paleontological collection data, for the use in conservation, ecology and paleontology. Includes automated tests to easily flag (and exclude) records assigned to country or province centroid, the open ocean, the headquarters of the Global Biodiversity Information Facility, urban areas or the location of biodiversity institutions (museums, zoos, botanical gardens, universities). Furthermore identifies per species outlier coordinates, zero coordinates, identical latitude/longitude and invalid coordinates. Also implements an algorithm to identify data sets with a significant proportion of rounded coordinates. Especially suited for large data sets. The reference for the methodology is: Zizka et al. (2019) doi:10.1111/2041-210X.13152.
Author: Alexander Zizka [aut, cre],
Daniele Silvestro [ctb],
Tobias Andermann [ctb],
Josue Azevedo [ctb],
Camila Duarte Ritter [ctb],
Daniel Edler [ctb],
Harith Farooq [ctb],
Andrei Herdean [ctb],
Maria Ariza [ctb],
Ruud Scharn [ctb],
Sten Svanteson [ctb],
Niklas Wengstrom [ctb],
Vera Zizka [ctb],
Alexandre Antonelli [ctb],
Irene Steves [rev] (Irene reviewed the package for ropensci, see
<https://github.com/ropensci/onboarding/issues/210>),
Francisco Rodriguez-Sanchez [rev] (Francisco reviewed the package for
ropensci, see <https://github.com/ropensci/onboarding/issues/210>)
Maintainer: Alexander Zizka <alexander.zizka@idiv.de>
Diff between CoordinateCleaner versions 2.0-9 dated 2019-04-02 and 2.0-11 dated 2019-04-24
DESCRIPTION | 8 +- MD5 | 22 +++---- NAMESPACE | 1 NEWS.md | 14 ++++ R/cc_outl.R | 70 +++++++++++++----------- R/cc_sea.R | 45 +++++---------- R/cc_urb.R | 38 ++++--------- R/clean_coordinates.R | 2 README.md | 2 man/clean_coordinates.Rd | 2 tests/testthat/test_coordinatelevel_functions.R | 12 +++- tests/testthat/test_wrapper_functions.R | 5 - 12 files changed, 110 insertions(+), 111 deletions(-)
More information about CoordinateCleaner at CRAN
Permanent link
Title: Get EC2 Instance Metadata
Description: Retrieve Amazon EC2 instance metadata from within the running instance.
Author: Thomas J. Leeper [aut] (<https://orcid.org/0000-0003-4097-6326>),
Jonathan Stott [cre, aut]
Maintainer: Jonathan Stott <jonathan.stott@magairports.com>
Diff between aws.ec2metadata versions 0.1.5 dated 2018-07-26 and 0.1.6 dated 2019-04-24
DESCRIPTION | 22 +++++++++++++--------- MD5 | 6 +++--- R/aws.ec2metadata-package.R | 17 ++++++++++++----- man/ec2metadata.Rd | 13 +++++++++---- 4 files changed, 37 insertions(+), 21 deletions(-)
More information about aws.ec2metadata at CRAN
Permanent link
Title: Smooth-Rough Partitioning of the Regression Coefficients
Description: Performs the change-point detection in regression coefficients of linear model
by partitioning the regression coefficients into two classes of smoothness. The change-point and
the regression coefficients are jointly estimated.
Author: Hyeyoung Maeng [aut, cre],
Piotr Fryzlewicz [aut]
Maintainer: Hyeyoung Maeng <h.maeng@lse.ac.uk>
Diff between srp versions 1.1.0 dated 2018-08-29 and 1.2.0 dated 2019-04-24
DESCRIPTION | 9 +++++---- MD5 | 37 +++++++++++++++++++------------------ NAMESPACE | 1 + R/data.R | 2 +- R/ncs.R | 7 ++++--- R/predict.R | 38 ++++++++++++++++++++++++++++++++++---- R/sic_c.R | 25 +++++++++++++------------ R/sic_l.R | 14 +++++++------- R/srp.R | 4 ++-- R/srp_c.R | 25 ++++++++++++++----------- R/srp_l.R | 16 +++++++++------- man/ncs.Rd | 9 ++++++--- man/predict.srp.c.Rd | 2 +- man/predict.srp.l.Rd |only man/sic.c.Rd | 22 ++++++++++++---------- man/sic.l.Rd | 16 ++++++++-------- man/srp.Rd | 4 ++-- man/srp.c.Rd | 21 ++++++++++++--------- man/srp.l.Rd | 14 +++++++------- man/truebeta.Rd | 2 +- 20 files changed, 158 insertions(+), 110 deletions(-)
Title: Functions to Fit Monotone Polynomials
Description: Functions for fitting monotone polynomials to data.
Detailed discussion of the methodologies used can be
found in Murray, Mueller and Turlach (2013)
<doi:10.1007/s00180-012-0390-5> and Murray, Mueller and
Turlach (2016) <doi:10.1080/00949655.2016.1139582>.
Author: Berwin A. Turlach [aut, cre] (<https://orcid.org/0000-0001-8795-471X>),
Kevin Murray [ctb] (<https://orcid.org/0000-0002-8856-6046>)
Maintainer: Berwin A. Turlach <Berwin.Turlach@gmail.com>
Diff between MonoPoly versions 0.3-9 dated 2017-12-20 and 0.3-10 dated 2019-04-24
DESCRIPTION | 14 +++++++------- MD5 | 10 +++++----- R/00makeGradSOS.R | 2 +- build/partial.rdb |binary inst/doc/MonoPoly-manual.pdf |binary src/Makevars | 2 +- 6 files changed, 14 insertions(+), 14 deletions(-)
Title: Tools and Plots for Multi-Well Plates
Description: Collection of functions for working with multi-well microtitre
plates, mainly 96, 384 and 1536 well plates.
Author: Scott Warchal [aut, cre]
Maintainer: Scott Warchal <scott.warchal@gmail.com>
Diff between platetools versions 0.1.1 dated 2018-06-25 and 0.1.2 dated 2019-04-24
DESCRIPTION | 12 ++--- MD5 | 84 ++++++++++++++++++------------------ NAMESPACE | 2 R/b_grid.R | 30 ++++++++---- R/b_map.R | 35 ++++++++++----- R/bhit_map.R | 28 +++++++----- R/fill_plate.R | 33 ++++++++++---- R/hit_grid.R | 44 ++++++++++-------- R/hit_map.R | 27 ++++++----- R/med_smooth.R | 20 +++++--- R/num_to_well.R | 4 + R/pc_grid.R | 19 ++------ R/pc_map.R | 6 +- R/pchit_grid.R | 6 +- R/pchit_map.R | 14 +----- R/plate_map.R | 29 ++++-------- R/plot_wrapper.R | 53 +++++++++++++++++----- R/raw_grid.R | 21 +++------ R/raw_map.R | 18 +++---- R/read_map.R | 27 ++++------- R/set_block.R | 8 +-- R/well_to_num.R | 30 +++--------- R/z_grid.R | 39 ++++++++++------ R/z_map.R | 13 ++--- man/b_grid.Rd | 27 ++++++++--- man/b_map.Rd | 16 ++++++ man/bhit_map.Rd | 13 +++++ man/hit_grid.Rd | 11 +++- man/hit_map.Rd | 12 +++-- man/med_smooth.Rd | 11 ++++ man/pc_grid.Rd | 6 +- man/pc_map.Rd | 4 + man/pchit_grid.Rd | 6 +- man/pchit_map.Rd | 5 +- man/plt1536.Rd | 6 ++ man/plt384.Rd | 6 ++ man/plt96.Rd | 6 ++ man/raw_grid.Rd | 4 + man/raw_map.Rd | 4 + man/z_grid.Rd | 12 +++-- man/z_map.Rd | 4 + tests/testthat/test-missing_wells.R | 22 ++++----- tests/testthat/test-read_map.R | 3 - 43 files changed, 452 insertions(+), 328 deletions(-)
Title: Mediation Analysis for Complex Surveys
Description: It is a computer tool to conduct mediation analysis for complex surveys using multi-stage sampling. Specifically, the mediation analysis method using balanced repeated replications was proposed by Mai, Ha, and Soulakova (2019) <DOI:10.1080/10705511.2018.1559065>. The development of 'MedSurvey' was sponsored by American Lebanese Syrian Associated Charities (ALSAC). However, the contents of MedSurvey do not necessarily represent the policy of the ALSAC.
Author: Yujiao Mai [aut],
Jiahui Xu [aut],
Deo Kumar Srivastava [aut],
Hui Zhang [aut,cre]
Maintainer: Hui Zhang <hui.zhang@stjude.org>
Diff between MedSurvey versions 1.1.0 dated 2019-04-02 and 1.1.1.0 dated 2019-04-24
DESCRIPTION | 12 ++++++------ MD5 | 2 +- 2 files changed, 7 insertions(+), 7 deletions(-)
Title: Converts 'R' Objects to Javascript Object Notation (JSON)
Description: Converts 'R' objects into Javascript Object Notation (JSON) using
the 'rapidjsonr' library <https://CRAN.R-project.org/package=rapidjsonr>.
Author: David Cooley [aut, cre]
Maintainer: David Cooley <dcooley@symbolix.com.au>
Diff between jsonify versions 0.2.0 dated 2019-01-10 and 0.2.1 dated 2019-04-24
jsonify-0.2.0/jsonify/inst/include/jsonify/to_json.hpp |only jsonify-0.2.0/jsonify/inst/include/jsonify/to_json/dataframe.hpp |only jsonify-0.2.0/jsonify/inst/include/jsonify/to_json/vectors.hpp |only jsonify-0.2.0/jsonify/inst/include/jsonify/to_json/writers.hpp |only jsonify-0.2.0/jsonify/inst/include/jsonify/utils.hpp |only jsonify-0.2.1/jsonify/DESCRIPTION | 10 jsonify-0.2.1/jsonify/MD5 | 29 jsonify-0.2.1/jsonify/NAMESPACE | 3 jsonify-0.2.1/jsonify/NEWS.md | 5 jsonify-0.2.1/jsonify/R/pretty.R | 6 jsonify-0.2.1/jsonify/R/to_json.R | 19 jsonify-0.2.1/jsonify/build/vignette.rds |binary jsonify-0.2.1/jsonify/inst/doc/jsonify.html | 356 +++++----- jsonify-0.2.1/jsonify/inst/include/jsonify/to_json/writers/complex.hpp | 11 jsonify-0.2.1/jsonify/inst/include/jsonify/to_json/writers/simple.hpp | 9 jsonify-0.2.1/jsonify/man/as.json.Rd |only jsonify-0.2.1/jsonify/tests/testthat/test-as_json.R |only jsonify-0.2.1/jsonify/tests/testthat/test-to_json_dataframe.R | 41 + jsonify-0.2.1/jsonify/tests/testthat/test-to_json_vectors.R | 26 19 files changed, 305 insertions(+), 210 deletions(-)
Title: Incomplete Block Designs
Description: A collection of several utility functions related to binary incomplete block designs. The package contains function to generate A- and D-efficient binary incomplete block designs with given numbers of treatments, number of blocks and block size. The package also contains function to generate an incomplete block design with specified concurrence matrix. There are functions to generate balanced treatment incomplete block designs and incomplete block designs for test versus control treatments comparisons with specified concurrence matrix. Package also allows performing analysis of variance of data and computing estimated marginal means of factors from experiments using a connected incomplete block design. Tests of hypothesis of treatment contrasts in incomplete block design set up is supported.
Author: B N Mandal [aut, cre]
Maintainer: B N Mandal <mandal.stat@gmail.com>
Diff between ibd versions 1.4 dated 2018-07-23 and 1.5 dated 2019-04-24
DESCRIPTION | 12 +++++++----- MD5 | 16 ++++++++-------- NAMESPACE | 7 +++++-- R/ibd.R | 11 ++++++----- man/aov.ibd.Rd | 4 ++-- man/bibd.Rd | 2 ++ man/btib.Rd | 1 + man/btib1.Rd | 3 ++- man/ibd.Rd | 2 ++ 9 files changed, 35 insertions(+), 23 deletions(-)
Title: Teaching Hydrological Modelling with the GR Rainfall-Runoff
Models ('Shiny' Interface Included)
Description: Add-on package to the 'airGR' package that simplifies its use and is aimed at being used for teaching hydrology. The package provides 1) three functions that allow to complete very simply a hydrological modelling exercise 2) plotting functions to help students to explore observed data and to interpret the results of calibration and simulation of the GR ('Génie rural') models 3) a 'Shiny' graphical interface that allows for displaying the impact of model parameters on hydrographs and models internal variables.
Author: Olivier Delaigue [aut, cre] (<https://orcid.org/0000-0002-7668-8468>),
Laurent Coron [aut] (<https://orcid.org/0000-0002-1503-6204>),
Pierre Brigode [aut] (<https://orcid.org/0000-0001-8257-0741>),
Guillaume Thirel [ctb] (<https://orcid.org/0000-0002-1444-1830>)
Maintainer: Olivier Delaigue <airGR@irstea.fr>
Diff between airGRteaching versions 0.2.6.14 dated 2019-04-05 and 0.2.6.27 dated 2019-04-24
DESCRIPTION | 8 +- MD5 | 20 ++--- NEWS | 25 ++++++ R/CalGR.R | 2 R/PrepGR.R | 4 - R/ShinyGR.R | 6 + R/SimGR.R | 4 - R/dyplot.default.R | 2 inst/ShinyGR/server.R | 111 +++++++++++++++++------------ inst/ShinyGR/www/fig/logo_airGR_square.svg | 18 ++-- man/PrepGR.Rd | 6 + 11 files changed, 128 insertions(+), 78 deletions(-)
Title: Performs Quality Control, Data Normalization, and Batch Effect
Correction for 'NanoString nCounter' Data
Description: Provides quality control (QC), normalization, and
batch effect correction operations for 'NanoString nCounter' data,
Talhouk et al. (2016) <doi:10.1371/journal.pone.0153844>. Various
metrics are used to determine which samples passed or failed QC. Gene
expression should first be normalized to housekeeping genes, before a
reference-based approach is used to adjust for batch effects. Raw
NanoString data can be imported in the form of Reporter Code Count
(RCC) files.
Author: Derek Chiu [aut, cre],
Aline Talhouk [aut],
Samuel Leung [aut]
Maintainer: Derek Chiu <dchiu@bccrc.ca>
Diff between nanostringr versions 0.1.2 dated 2019-04-03 and 0.1.3 dated 2019-04-24
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 10 ++++++++++ R/CCplot.R | 6 ++++-- R/NanoStringQC.R | 19 ++++++++++++------- R/check.R | 11 +++++++---- inst/doc/Overview.html | 8 ++++---- tests/testthat/test-NanoStringQC.R | 20 ++++++++++++++++++++ tests/testthat/test-parse.R | 8 ++++++++ 9 files changed, 77 insertions(+), 29 deletions(-)