Title: Search and Retrieve Data from Eurostat Database
Description: Eurostat is the statistical office of the European Union and provides high quality statistics for Europe.
Large set of the data is disseminated through the Eurostat database (<https://ec.europa.eu/eurostat/data/database>).
The tools are using the REST API with the Statistical Data and Metadata eXchange (SDMX <https://sdmx.org>) Web Services
(<https://ec.europa.eu/eurostat/web/sdmx-web-services/about-this-service>) to search and download data from
the Eurostat database using the SDMX standard.
Author: Mátyás Mészáros [aut, cre]
Maintainer: Mátyás Mészáros <matyas.meszaros@ec.europa.eu>
Diff between restatapi versions 0.1.4 dated 2019-04-26 and 0.1.6 dated 2019-04-28
DESCRIPTION | 10 ++-- MD5 | 60 +++++++++++++------------- R/extract_data.R | 6 ++ R/extract_dsd.R | 6 ++ R/extract_toc.R | 6 ++ R/get_eurostat_bulk.R | 8 ++- R/get_eurostat_cache.R | 6 ++ R/get_eurostat_data.R | 8 ++- R/get_eurostat_dsd.R | 12 +++-- R/get_eurostat_raw.R | 24 ++++++---- R/get_eurostat_toc.R | 10 +++- R/load_cfg.R | 41 +++++++++++++++-- R/put_eurostat_cache.R | 6 ++ R/search_eurostat_dsd.R | 6 ++ R/search_eurostat_toc.R | 10 +++- R/zzz.R | 1 README.md | 9 +++ man/extract_data.Rd | 6 ++ man/extract_dsd.Rd | 6 ++ man/extract_toc.Rd | 6 ++ man/get_eurostat_bulk.Rd | 8 ++- man/get_eurostat_cache.Rd | 6 ++ man/get_eurostat_data.Rd | 8 ++- man/get_eurostat_dsd.Rd | 10 +++- man/get_eurostat_raw.Rd | 8 ++- man/get_eurostat_toc.Rd | 8 ++- man/load_cfg.Rd | 17 ++++++- man/put_eurostat_cache.Rd | 6 ++ man/search_eurostat_dsd.Rd | 6 ++ man/search_eurostat_toc.Rd | 10 +++- tests/testthat/test-all.R | 103 +++++++++++++++++++++++++-------------------- 31 files changed, 301 insertions(+), 136 deletions(-)
Title: Split Plot
Description: Automates common plotting tasks to ease data exploration.
Makes density plots (potentially overlaid on histograms),
scatter plots with prediction lines, or bar or line plots with error bars.
For each type, y, or x and y variables can be plotted at levels of other variables,
all with minimal specification.
Author: Micah Iserman
Maintainer: Micah Iserman <micah.iserman@ttu.edu>
Diff between splot versions 0.4.1 dated 2019-01-18 and 0.4.2 dated 2019-04-28
DESCRIPTION | 6 - MD5 | 14 +- NAMESPACE | 1 R/splot.R | 248 +++++++++++++++++++++++++++++++---------------------- R/utils.R | 75 ++++++++-------- inst/NEWS.Rd | 47 ++++++++-- man/splot.Rd | 3 man/splot.color.Rd | 10 +- 8 files changed, 250 insertions(+), 154 deletions(-)
Title: Utilities for Convenient Extraction of Medical Image Metadata
Description: A collection of utilities for navigating medical image data. The DICOM and NIfTI formats
are supported. Functions provide simple interfaces to the data and metadata contained in these formats.
A particular emphasis on metadata allows simple conversion of image metadata to familiar R data structures
such as lists and data frames. Where possible, generic functions can silently process either DICOM or
NIfTI data. Additionally, image data can be extracted and viewed.
Author: Pamela Russell [aut, cre]
Maintainer: Pamela Russell <pamela.russell@gmail.com>
Diff between radtools versions 1.0.5 dated 2019-04-16 and 1.0.6 dated 2019-04-28
DESCRIPTION | 6 MD5 | 29 - NEWS.md | 4 build/vignette.rds |binary inst/doc/oro_compare.R | 122 +++---- inst/doc/oro_compare.html | 522 ++++--------------------------- inst/doc/radtools_usage.R | 120 +++---- inst/doc/radtools_usage.html | 385 +++------------------- tests/testthat/helper.R |only tests/testthat/setup-dicomdata.R | 188 +++++------ tests/testthat/setup-niftidata.R | 61 +-- tests/testthat/test_image_import_dicom.R | 12 tests/testthat/test_image_import_nifti.R | 48 +- tests/testthat/test_metadata_dicom.R | 108 +++--- tests/testthat/test_metadata_nifti.R | 222 ++++++------- tests/testthat/test_view.R | 14 16 files changed, 597 insertions(+), 1244 deletions(-)
Title: Comprehensive, User-Friendly Toolkit for Probing Interactions
Description: A suite of functions for conducting and interpreting analysis
of statistical interaction in regression models that was formerly part of the
'jtools' package. Functionality includes visualization of two- and three-way
interactions among continuous and/or categorical variables as well as
calculation of "simple slopes" and Johnson-Neyman intervals. These
capabilities are implemented for generalized linear models in addition to the
standard linear regression context.
Author: Jacob A. Long [aut, cre] (<https://orcid.org/0000-0002-1582-6214>)
Maintainer: Jacob A. Long <long.1377@osu.edu>
Diff between interactions versions 1.0.0 dated 2019-02-18 and 1.1.0 dated 2019-04-28
DESCRIPTION | 15 MD5 | 58 NAMESPACE | 27 NEWS.md | 91 - R/cat_plot.R | 4 R/int_utils.R | 126 + R/interact_plot.R | 14 R/johnson_neyman.R | 6 R/simple_margins.R |only R/simple_slopes.R | 196 +- R/utils.R | 28 build/vignette.rds |binary inst/CITATION | 20 inst/doc/categorical.Rmd | 6 inst/doc/categorical.html | 2123 +++++++++++++++++++--------- inst/doc/interactions.Rmd | 6 inst/doc/interactions.html | 2668 ++++++++++++++++++++++-------------- man/as_huxtable.sim_margins.Rd |only man/as_huxtable.sim_slopes.Rd | 9 man/cat_plot.Rd | 20 man/interact_plot.Rd | 20 man/johnson_neyman.Rd | 2 man/plot.sim_margins.Rd |only man/probe_interaction.Rd | 27 man/sim_margins.Rd |only man/sim_margins_tidiers.Rd |only man/sim_slopes.Rd | 74 tests/testthat/Rplots.pdf |binary tests/testthat/test_interact_plot.R | 11 tests/testthat/test_sim_margins.R |only tests/testthat/test_sim_slopes.R | 9 vignettes/categorical.Rmd | 6 vignettes/interactions.Rmd | 6 33 files changed, 3669 insertions(+), 1903 deletions(-)
Title: Automatic Marking of R Assignments
Description: Automatic marking of R assignments for students and teachers based
on 'testthat' test suites.
Author: Mans Magnusson, Oscar Pettersson
Maintainer: Mans Magnusson <mons.magnusson@gmail.com>
Diff between markmyassignment versions 0.8.1 dated 2018-01-17 and 0.8.2 dated 2019-04-28
DESCRIPTION | 17 +++++----- MD5 | 40 ++++++++++++------------- NAMESPACE | 5 --- R/expectations.R | 20 ++++++------ R/mark_my_assignment.R | 10 +++--- R/mark_my_dir.R | 2 - R/mark_my_file.R | 11 +++--- R/markmyassignment.R | 1 R/set_assignment.R | 4 +- build/vignette.rds |binary inst/doc/markmyassignment-teacher.html | 4 +- inst/doc/markmyassignment.R | 6 +-- inst/doc/markmyassignment.Rmd | 6 +-- inst/doc/markmyassignment.html | 52 ++++++++++++++++----------------- man/mark_my_file.Rd | 10 +++--- man/run_test_suite.Rd | 3 + tests/testthat/test-github.R | 16 +++++----- tests/testthat/test-mark_my_dir.R | 8 ++--- tests/testthat/test-mark_my_file.R | 10 +++--- tests/testthat/test-set_assignment.R | 36 ++++++++++++---------- vignettes/markmyassignment.Rmd | 6 +-- 21 files changed, 136 insertions(+), 131 deletions(-)
More information about markmyassignment at CRAN
Permanent link
Title: Estimation of Marginal Treatment Effects using Local
Instrumental Variables
Description: In the generalized Roy model, the marginal treatment effect (MTE) can be used as
a building block for constructing conventional causal parameters such as the average treatment
effect (ATE) and the average treatment effect on the treated (ATT) (Heckman, Urzua, and Vytlacil 2006
<doi:10.1162/rest.88.3.389>). Given a treatment selection model and an outcome model, the function mte()
estimates the MTE via a semiparametric local instrumental variables method (or via a normal selection model).
The function eval_mte() evaluates MTE at any combination of covariates x and latent resistance u, and the
function eval_mte_tilde() evaluates MTE projected onto the estimated propensity score (Zhou and Xie 2019
<https://www.journals.uchicago.edu/doi/abs/10.1086/702172>). The object returned by mte() can be used to
estimate conventional parameters such as ATE, ATT, and ATU (via average()) or marginal policy-relevant
treatment effects (via mprte()).
Author: Xiang Zhou [aut, cre]
Maintainer: Xiang Zhou <xiang_zhou@fas.harvard.edu>
Diff between localIV versions 0.1.0 dated 2018-08-05 and 0.2.0 dated 2019-04-28
localIV-0.1.0/localIV/R/aggregate.R |only localIV-0.1.0/localIV/R/mte_localIV.R |only localIV-0.1.0/localIV/R/mte_normal.R |only localIV-0.2.0/localIV/DESCRIPTION | 17 ++++---- localIV-0.2.0/localIV/MD5 | 22 ++++++----- localIV-0.2.0/localIV/NAMESPACE | 2 + localIV-0.2.0/localIV/R/average.R |only localIV-0.2.0/localIV/R/eval_mte.R |only localIV-0.2.0/localIV/R/eval_mte_tilde.R |only localIV-0.2.0/localIV/R/mprte.R |only localIV-0.2.0/localIV/R/mte.R | 53 +++++++--------------------- localIV-0.2.0/localIV/R/utils.R |only localIV-0.2.0/localIV/man/average.Rd | 15 ++++--- localIV-0.2.0/localIV/man/eval_mte.Rd |only localIV-0.2.0/localIV/man/eval_mte_tilde.Rd |only localIV-0.2.0/localIV/man/mprte.Rd | 10 ++--- localIV-0.2.0/localIV/man/mte.Rd | 46 +++--------------------- 17 files changed, 58 insertions(+), 107 deletions(-)
Title: Exact Distributions for Rank and Permutation Tests
Description: Computes exact conditional p-values and quantiles using an
implementation of the Shift-Algorithm by Streitberg & Roehmel.
Author: Torsten Hothorn [aut, cre],
Kurt Hornik [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between exactRankTests versions 0.8-29 dated 2017-03-01 and 0.8-30 dated 2019-04-28
exactRankTests-0.8-29/exactRankTests/tests/dtest.Rout.save |only exactRankTests-0.8-29/exactRankTests/tests/stest.Rout.save |only exactRankTests-0.8-30/exactRankTests/DESCRIPTION | 8 exactRankTests-0.8-30/exactRankTests/MD5 | 48 +-- exactRankTests-0.8-30/exactRankTests/R/wilcox.exact.R | 4 exactRankTests-0.8-30/exactRankTests/data/ASAT.rda |binary exactRankTests-0.8-30/exactRankTests/data/bloodp.rda |binary exactRankTests-0.8-30/exactRankTests/data/ears.rda |binary exactRankTests-0.8-30/exactRankTests/data/glioma.rda |binary exactRankTests-0.8-30/exactRankTests/data/globulin.rda |binary exactRankTests-0.8-30/exactRankTests/data/lungcancer.rda |binary exactRankTests-0.8-30/exactRankTests/data/neuropathy.rda |binary exactRankTests-0.8-30/exactRankTests/data/ocarcinoma.rda |binary exactRankTests-0.8-30/exactRankTests/data/rotarod.rda |binary exactRankTests-0.8-30/exactRankTests/data/sal.rda |binary exactRankTests-0.8-30/exactRankTests/inst/NEWS | 4 exactRankTests-0.8-30/exactRankTests/tests/bugfix-tests.R | 2 exactRankTests-0.8-30/exactRankTests/tests/bugfix-tests.Rout.save | 10 exactRankTests-0.8-30/exactRankTests/tests/dtest.R | 4 exactRankTests-0.8-30/exactRankTests/tests/exactRankTests-Ex.R | 3 exactRankTests-0.8-30/exactRankTests/tests/exactRankTests-Ex.Rout.save | 152 ++++----- exactRankTests-0.8-30/exactRankTests/tests/exactRankTests-ExOLD.R | 3 exactRankTests-0.8-30/exactRankTests/tests/exactRankTests-ExOLD.Rout.save | 156 +++++----- exactRankTests-0.8-30/exactRankTests/tests/reg-tests.R | 5 exactRankTests-0.8-30/exactRankTests/tests/reg-tests.Rout.save | 150 ++++----- exactRankTests-0.8-30/exactRankTests/tests/stest.R | 5 26 files changed, 280 insertions(+), 274 deletions(-)
More information about exactRankTests at CRAN
Permanent link
Title: Official Lego Color Palettes
Description: Provides a dataset containing several color naming conventions established by multiple sources, along with associated color metadata.
The package also provides related helper functions for mapping among the different Lego color naming conventions and between Lego colors, hex colors, and 'R' color names,
making it easy to convert any color palette to one based on existing Lego colors while keeping as close to the original color palette as possible.
The functions use nearest color matching based on Euclidean distance in RGB space.
Naming conventions for color mapping include those from 'BrickLink' (<https://www.bricklink.com>), 'The Lego Group' (<https://www.lego.com>), 'LDraw' (<https://www.ldraw.org/>), and 'Peeron' (<http://www.peeron.com/>).
Author: Matthew Leonawicz [aut, cre]
Maintainer: Matthew Leonawicz <matt_leonawicz@esource.com>
Diff between legocolors versions 0.1.2 dated 2019-03-24 and 0.2.0 dated 2019-04-28
DESCRIPTION | 11 +++-- MD5 | 28 ++++++++------ NAMESPACE | 1 NEWS.md | 6 +++ R/legocolors.R | 4 +- R/mapping.R | 68 +++++++++++++++++++++++++---------- README.md | 68 +++++++++++++++++++++++++++++++++-- data/legocolors.rda |binary data/legopals.rda |binary man/figures/README-plot-1.png |only man/figures/README-plot-2.png |only man/figures/README-recommended-1.png |only man/legocolor.Rd | 54 ++++++++++++++++++--------- man/legocolors.Rd | 2 - man/legopals.Rd | 2 - tests/testthat/Rplots.pdf |only tests/testthat/test-mapping.R | 5 ++ 17 files changed, 189 insertions(+), 60 deletions(-)
Title: Improved Predictors
Description: Improved predictive models by indirect classification and
bagging for classification, regression and survival problems
as well as resampling based estimators of prediction error.
Author: Andrea Peters [aut],
Torsten Hothorn [aut, cre],
Brian D. Ripley [ctb],
Terry Therneau [ctb],
Beth Atkinson [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between ipred versions 0.9-8 dated 2018-11-05 and 0.9-9 dated 2019-04-28
ipred-0.9-8/ipred/tests/Examples |only ipred-0.9-8/ipred/tests/ipred-segfault.Rout.save |only ipred-0.9-9/ipred/DESCRIPTION | 8 +++---- ipred-0.9-9/ipred/MD5 | 24 ++++++++++------------ ipred-0.9-9/ipred/R/inbagg.R | 2 - ipred-0.9-9/ipred/build/vignette.rds |binary ipred-0.9-9/ipred/inst/NEWS | 6 +++++ ipred-0.9-9/ipred/inst/doc/ipred-examples.pdf |binary ipred-0.9-9/ipred/man/DLBCL.Rd | 1 ipred-0.9-9/ipred/tests/ipred-bugs.R | 2 - ipred-0.9-9/ipred/tests/ipred-bugs.Rout.save | 10 ++++----- ipred-0.9-9/ipred/tests/ipred-segfault.R | 2 + ipred-0.9-9/ipred/tests/ipred-smalltest.R | 1 ipred-0.9-9/ipred/tests/ipred-smalltest.Rout.save | 9 ++++---- 14 files changed, 37 insertions(+), 28 deletions(-)
Title: Develop a 'Telegram Bot' with R
Description: Provides a pure interface for the 'Telegram Bot API'
<http://core.telegram.org/bots/api>. In addition to the pure API
implementation, it features a number of tools to make the development of
'Telegram' bots with R easy and straightforward, providing an easy-to-use
interface that takes some work off the programmer.
Author: Ernest Benedito [aut, cre]
Maintainer: Ernest Benedito <ebeneditos@gmail.com>
Diff between telegram.bot versions 2.3.0 dated 2019-02-09 and 2.3.1 dated 2019-04-28
DESCRIPTION | 19 MD5 | 172 +- NEWS.md | 104 - R/base.R | 93 - R/basefilter.R | 27 R/bot.R | 1537 +++++++++++++----------- R/callbackqueryhandler.R | 91 - R/commandhandler.R | 184 +- R/dispatcher.R | 178 +- R/errorhandler.R | 38 R/filters.R | 22 R/handler.R | 140 +- R/inlinequeryresult.R | 54 R/messagehandler.R | 129 -- R/replymarkup.R | 340 ++--- R/telegram.bot-package.R | 39 R/update.R | 217 +-- R/updater.R | 237 +-- R/utils.R | 45 README.md | 63 build/vignette.rds |binary inst/doc/telegrambot-advanced-filters.R | 16 inst/doc/telegrambot-advanced-filters.Rmd | 16 inst/doc/telegrambot-advanced-filters.html | 315 ++++ inst/doc/telegrambot-basic-functionalities.html | 351 ++++- inst/doc/telegrambot-building-a-bot.html | 315 ++++ inst/doc/telegrambot-introduction.R | 52 inst/doc/telegrambot-introduction.Rmd | 52 inst/doc/telegrambot-introduction.html | 411 ++++-- inst/doc/telegrambot-set-a-proxy.html | 293 +++- inst/doc/telegrambot-the-add-operator.R | 2 inst/doc/telegrambot-the-add-operator.Rmd | 2 inst/doc/telegrambot-the-add-operator.html | 345 ++++- man/BaseFilter.Rd | 10 man/Bot.Rd | 16 man/CallbackQueryHandler.Rd | 3 man/CommandHandler.Rd | 12 man/Dispatcher.Rd | 6 man/ErrorHandler.Rd | 5 man/ForceReply.Rd | 4 man/Handler.Rd | 57 man/InlineKeyboardButton.Rd | 14 man/InlineKeyboardMarkup.Rd | 35 man/InlineQueryResult.Rd | 19 man/KeyboardButton.Rd | 8 man/MessageFilters.Rd | 3 man/MessageHandler.Rd | 13 man/ReplyKeyboardMarkup.Rd | 24 man/ReplyKeyboardRemove.Rd | 13 man/TelegramObject-add.Rd | 40 man/Update.Rd | 3 man/Updater.Rd | 49 man/add_error_handler.Rd | 2 man/add_handler.Rd | 16 man/answerCallbackQuery.Rd | 23 man/answerInlineQuery.Rd | 63 man/bot_token.Rd | 6 man/check_update.Rd | 3 man/deleteMessage.Rd | 14 man/deleteWebhook.Rd | 4 man/editMessageReplyMarkup.Rd | 18 man/filtersLogic.Rd | 2 man/forwardMessage.Rd | 4 man/getFile.Rd | 18 man/getUpdates.Rd | 36 man/getUserProfilePhotos.Rd | 4 man/getWebhookInfo.Rd | 3 man/handle_update.Rd | 3 man/sendAnimation.Rd | 28 man/sendAudio.Rd | 33 man/sendChatAction.Rd | 12 man/sendDocument.Rd | 32 man/sendLocation.Rd | 15 man/sendMessage.Rd | 24 man/sendPhoto.Rd | 31 man/sendSticker.Rd | 20 man/sendVideo.Rd | 29 man/sendVideoNote.Rd | 21 man/sendVoice.Rd | 33 man/setWebhook.Rd | 49 man/start_polling.Rd | 28 man/stop_polling.Rd | 10 man/telegram.bot.Rd | 30 man/user_id.Rd | 6 vignettes/telegrambot-advanced-filters.Rmd | 16 vignettes/telegrambot-introduction.Rmd | 52 vignettes/telegrambot-the-add-operator.Rmd | 2 87 files changed, 4363 insertions(+), 2560 deletions(-)
Title: Van Westendorp Price Sensitivity Meter Analysis
Description: An implementation of the van Westendorp Price
Sensitivity Meter in R, which is a survey-based approach
to analyze consumer price preferences and sensitivity
(van Westendorp 1976, isbn:9789283100386).
Author: Max Alletsee [aut, cre]
Maintainer: Max Alletsee <max.alletsee@gmail.com>
Diff between pricesensitivitymeter versions 0.4.1 dated 2018-10-21 and 1.0.0 dated 2019-04-28
pricesensitivitymeter-0.4.1/pricesensitivitymeter/R/psm_summary.r |only pricesensitivitymeter-1.0.0/pricesensitivitymeter/DESCRIPTION | 9 pricesensitivitymeter-1.0.0/pricesensitivitymeter/LICENSE | 4 pricesensitivitymeter-1.0.0/pricesensitivitymeter/MD5 | 50 pricesensitivitymeter-1.0.0/pricesensitivitymeter/NAMESPACE | 12 pricesensitivitymeter-1.0.0/pricesensitivitymeter/NEWS | 11 pricesensitivitymeter-1.0.0/pricesensitivitymeter/R/psm_class_summary.R |only pricesensitivitymeter-1.0.0/pricesensitivitymeter/R/psm_functions.R | 96 + pricesensitivitymeter-1.0.0/pricesensitivitymeter/R/psm_weighted_functions.R |only pricesensitivitymeter-1.0.0/pricesensitivitymeter/README.md | 25 pricesensitivitymeter-1.0.0/pricesensitivitymeter/build/vignette.rds |binary pricesensitivitymeter-1.0.0/pricesensitivitymeter/inst/doc/interpolation-in-small-samples.Rmd | 6 pricesensitivitymeter-1.0.0/pricesensitivitymeter/inst/doc/interpolation-in-small-samples.html | 246 ++-- pricesensitivitymeter-1.0.0/pricesensitivitymeter/inst/doc/using-weighted-data.R |only pricesensitivitymeter-1.0.0/pricesensitivitymeter/inst/doc/using-weighted-data.Rmd |only pricesensitivitymeter-1.0.0/pricesensitivitymeter/inst/doc/using-weighted-data.html |only pricesensitivitymeter-1.0.0/pricesensitivitymeter/inst/doc/visualizing-psm-results.R | 2 pricesensitivitymeter-1.0.0/pricesensitivitymeter/inst/doc/visualizing-psm-results.Rmd | 2 pricesensitivitymeter-1.0.0/pricesensitivitymeter/inst/doc/visualizing-psm-results.html | 585 +++++----- pricesensitivitymeter-1.0.0/pricesensitivitymeter/man/pricesensitivitymeter.rd | 3 pricesensitivitymeter-1.0.0/pricesensitivitymeter/man/psm-class.Rd | 8 pricesensitivitymeter-1.0.0/pricesensitivitymeter/man/psm_analysis.rd | 29 pricesensitivitymeter-1.0.0/pricesensitivitymeter/man/psm_analysis_weighted.rd |only pricesensitivitymeter-1.0.0/pricesensitivitymeter/man/summary.psm.Rd | 6 pricesensitivitymeter-1.0.0/pricesensitivitymeter/tests/testthat/test_data_input.R | 129 +- pricesensitivitymeter-1.0.0/pricesensitivitymeter/tests/testthat/test_data_input_weighted.R |only pricesensitivitymeter-1.0.0/pricesensitivitymeter/tests/testthat/test_data_output.R | 258 ++-- pricesensitivitymeter-1.0.0/pricesensitivitymeter/tests/testthat/test_data_output_weighted.R |only pricesensitivitymeter-1.0.0/pricesensitivitymeter/vignettes/interpolation-in-small-samples.Rmd | 6 pricesensitivitymeter-1.0.0/pricesensitivitymeter/vignettes/using-weighted-data.Rmd |only pricesensitivitymeter-1.0.0/pricesensitivitymeter/vignettes/visualizing-psm-results.Rmd | 2 31 files changed, 810 insertions(+), 679 deletions(-)
More information about pricesensitivitymeter at CRAN
Permanent link
Title: Estimating the Optimal Number of Migration Edges from 'Treemix'
Description: The popular population genetic software 'Treemix' by
'Pickrell and Pritchard' (2012) <DOI:10.1371/journal.pgen.1002967>
estimates the number of migration edges on a population tree.
However, it can be difficult to determine the number of migration
edges to include. Previously, it was customary to stop adding migration
edges when 99.8% of variation in the data was explained, but 'OptM'
automates this process using an ad hoc statistic based on the
second-order rate of change in the log likelihood. 'OptM' also
has added functionality for various threshold modeling
to compare with the ad hoc statistic.
Author: Robert Fitak [aut, cre]
Maintainer: Robert Fitak <rfitak9@gmail.com>
Diff between OptM versions 0.1.1 dated 2019-01-08 and 0.1.3 dated 2019-04-28
DESCRIPTION | 12 +++--- MD5 | 8 ++-- R/optM.R | 101 +++++++++++++++++++++++++++++++++++++--------------------- R/plot_optM.R | 15 +++++--- README.md | 13 +++++-- 5 files changed, 93 insertions(+), 56 deletions(-)
Title: A Word Cloud Geom for 'ggplot2'
Description: Provides a word cloud text geom for 'ggplot2'. Texts
are placed so that they do not overlap as in 'ggrepel'. The algorithm
used is a variation around the one of 'wordcloud2.js'.
Author: Erwan Le Pennec [aut, cre],
Kamil Slowikowski [aut]
Maintainer: Erwan Le Pennec <lepennec@gmail.com>
Diff between ggwordcloud versions 0.3.0 dated 2018-10-24 and 0.4.0 dated 2019-04-28
DESCRIPTION | 11 - MD5 | 40 +++--- NAMESPACE | 1 NEWS.md | 9 + R/geom-text-wordcloud.R | 193 ++++++++++++++++--------------- R/ggwordcloud.R | 1 R/love_words.R | 2 R/thankyou_words.R |only R/utilities.R | 19 +++ build/vignette.rds |binary data/thankyou_words.rda |only data/thankyou_words_small.rda |only inst/doc/ggwordcloud.Rmd | 8 - inst/doc/ggwordcloud.html | 97 ++++++++++----- man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/geom_text_wordcloud.Rd | 7 - man/love_words.Rd | 2 man/thankyou_words.Rd |only tests/testthat/test-01-ggwordcloud.R | 16 ++ tests/testthat/test-90-bugs.R | 23 +++ vignettes/ggwordcloud.Rmd | 8 - 23 files changed, 278 insertions(+), 159 deletions(-)
Title: Tidy Temporal Data Frames and Tools
Description: Provides a 'tbl_ts' class (the 'tsibble') to store
and manage temporal data in a data-centric format, which is built on
top of the 'tibble'. The 'tsibble' aims at easily manipulating and
analysing temporal data, including counting and filling in time gaps,
aggregate over calendar periods, performing rolling window
calculations, and etc.
Author: Earo Wang [aut, cre] (<https://orcid.org/0000-0001-6448-5260>),
Di Cook [aut, ths] (<https://orcid.org/0000-0002-3813-7155>),
Rob Hyndman [aut, ths] (<https://orcid.org/0000-0002-2140-5352>),
Mitchell O'Hara-Wild [aut] (<https://orcid.org/0000-0001-6729-7695>)
Maintainer: Earo Wang <earo.wang@gmail.com>
Diff between tsibble versions 0.7.0 dated 2019-02-18 and 0.8.0 dated 2019-04-28
tsibble-0.7.0/tsibble/man/id.Rd |only tsibble-0.7.0/tsibble/man/pull-interval.Rd |only tsibble-0.7.0/tsibble/man/tidyverse.Rd |only tsibble-0.8.0/tsibble/DESCRIPTION | 23 tsibble-0.8.0/tsibble/MD5 | 217 +++--- tsibble-0.8.0/tsibble/NAMESPACE | 92 -- tsibble-0.8.0/tsibble/NEWS.md | 37 + tsibble-0.8.0/tsibble/R/as-tsibble.R | 492 ++++----------- tsibble-0.8.0/tsibble/R/bind.R | 4 tsibble-0.8.0/tsibble/R/data.R | 2 tsibble-0.8.0/tsibble/R/deprecated.R | 85 ++ tsibble-0.8.0/tsibble/R/dplyr-groups.R | 31 tsibble-0.8.0/tsibble/R/dplyr-join.R | 84 -- tsibble-0.8.0/tsibble/R/dplyr-verbs.R | 252 ++----- tsibble-0.8.0/tsibble/R/error.R | 6 tsibble-0.8.0/tsibble/R/filter-index.R | 85 +- tsibble-0.8.0/tsibble/R/format.R | 3 tsibble-0.8.0/tsibble/R/gaps.R | 52 - tsibble-0.8.0/tsibble/R/index-by.R | 40 - tsibble-0.8.0/tsibble/R/index-valid.R | 2 tsibble-0.8.0/tsibble/R/interval.R | 131 ++- tsibble-0.8.0/tsibble/R/key-group.R | 33 - tsibble-0.8.0/tsibble/R/new-data.R | 4 tsibble-0.8.0/tsibble/R/period.R | 85 +- tsibble-0.8.0/tsibble/R/reexports.R | 28 tsibble-0.8.0/tsibble/R/slide.R | 19 tsibble-0.8.0/tsibble/R/stretch.R | 2 tsibble-0.8.0/tsibble/R/subset.R | 18 tsibble-0.8.0/tsibble/R/tidyr-verbs.R | 119 +-- tsibble-0.8.0/tsibble/R/tile.R | 2 tsibble-0.8.0/tsibble/R/time-wise.R | 1 tsibble-0.8.0/tsibble/R/ts2tsibble.R | 44 - tsibble-0.8.0/tsibble/R/tsibble-meta.R |only tsibble-0.8.0/tsibble/R/tsibble-pkg.R | 73 +- tsibble-0.8.0/tsibble/R/tsibble2ts.R | 29 tsibble-0.8.0/tsibble/R/type-sum.R | 20 tsibble-0.8.0/tsibble/R/update.R | 57 - tsibble-0.8.0/tsibble/R/utils-format.R | 22 tsibble-0.8.0/tsibble/R/utils.R | 10 tsibble-0.8.0/tsibble/R/zzz.R | 11 tsibble-0.8.0/tsibble/README.md | 45 - tsibble-0.8.0/tsibble/build/vignette.rds |binary tsibble-0.8.0/tsibble/data/pedestrian.rda |binary tsibble-0.8.0/tsibble/data/tourism.rda |binary tsibble-0.8.0/tsibble/inst/doc/faq.R | 9 tsibble-0.8.0/tsibble/inst/doc/faq.Rmd | 9 tsibble-0.8.0/tsibble/inst/doc/faq.html | 18 tsibble-0.8.0/tsibble/inst/doc/implicit-na.R | 1 tsibble-0.8.0/tsibble/inst/doc/implicit-na.Rmd | 1 tsibble-0.8.0/tsibble/inst/doc/implicit-na.html | 10 tsibble-0.8.0/tsibble/inst/doc/intro-tsibble.R | 7 tsibble-0.8.0/tsibble/inst/doc/intro-tsibble.Rmd | 18 tsibble-0.8.0/tsibble/inst/doc/intro-tsibble.html | 29 tsibble-0.8.0/tsibble/inst/doc/window.R | 3 tsibble-0.8.0/tsibble/inst/doc/window.Rmd | 3 tsibble-0.8.0/tsibble/inst/doc/window.html | 36 - tsibble-0.8.0/tsibble/man/as-tsibble.Rd | 47 - tsibble-0.8.0/tsibble/man/as.ts.tbl_ts.Rd | 2 tsibble-0.8.0/tsibble/man/build_tsibble.Rd | 26 tsibble-0.8.0/tsibble/man/count_gaps.Rd | 1 tsibble-0.8.0/tsibble/man/deprecated.Rd | 25 tsibble-0.8.0/tsibble/man/difference.Rd | 1 tsibble-0.8.0/tsibble/man/duplicates.Rd | 19 tsibble-0.8.0/tsibble/man/figures/animate-1.gif |only tsibble-0.8.0/tsibble/man/fill_gaps.Rd | 17 tsibble-0.8.0/tsibble/man/group_by_key.Rd | 2 tsibble-0.8.0/tsibble/man/has_gaps.Rd | 2 tsibble-0.8.0/tsibble/man/index-by.Rd | 9 tsibble-0.8.0/tsibble/man/index-rd.Rd | 2 tsibble-0.8.0/tsibble/man/index_valid.Rd | 2 tsibble-0.8.0/tsibble/man/interval-pull.Rd |only tsibble-0.8.0/tsibble/man/is-tsibble.Rd | 2 tsibble-0.8.0/tsibble/man/key_drop_default.Rd |only tsibble-0.8.0/tsibble/man/measured-vars.Rd | 2 tsibble-0.8.0/tsibble/man/new-data.Rd | 2 tsibble-0.8.0/tsibble/man/new_interval.Rd | 2 tsibble-0.8.0/tsibble/man/pedestrian.Rd | 1 tsibble-0.8.0/tsibble/man/period.Rd | 9 tsibble-0.8.0/tsibble/man/reexports.Rd | 43 - tsibble-0.8.0/tsibble/man/regular.Rd | 2 tsibble-0.8.0/tsibble/man/slide2.Rd | 2 tsibble-0.8.0/tsibble/man/slide_tsibble.Rd | 8 tsibble-0.8.0/tsibble/man/stretch_tsibble.Rd | 8 tsibble-0.8.0/tsibble/man/tile_tsibble.Rd | 8 tsibble-0.8.0/tsibble/man/time_in.Rd | 1 tsibble-0.8.0/tsibble/man/tourism.Rd | 1 tsibble-0.8.0/tsibble/man/tsibble-package.Rd | 71 +- tsibble-0.8.0/tsibble/man/tsibble-tidyverse.Rd |only tsibble-0.8.0/tsibble/man/tsibble.Rd | 77 +- tsibble-0.8.0/tsibble/man/update_tsibble.Rd | 14 tsibble-0.8.0/tsibble/src/utils.cpp | 2 tsibble-0.8.0/tsibble/tests/testthat/test-append.R | 2 tsibble-0.8.0/tsibble/tests/testthat/test-bind.R | 21 tsibble-0.8.0/tsibble/tests/testthat/test-deprecated.R |only tsibble-0.8.0/tsibble/tests/testthat/test-dplyr.R | 73 +- tsibble-0.8.0/tsibble/tests/testthat/test-empty.R | 19 tsibble-0.8.0/tsibble/tests/testthat/test-filter-index.R | 15 tsibble-0.8.0/tsibble/tests/testthat/test-gaps.R | 10 tsibble-0.8.0/tsibble/tests/testthat/test-index-fun.R | 36 + tsibble-0.8.0/tsibble/tests/testthat/test-indexby.R | 4 tsibble-0.8.0/tsibble/tests/testthat/test-join.R | 10 tsibble-0.8.0/tsibble/tests/testthat/test-key.R | 2 tsibble-0.8.0/tsibble/tests/testthat/test-misc.R | 4 tsibble-0.8.0/tsibble/tests/testthat/test-pillar.R | 4 tsibble-0.8.0/tsibble/tests/testthat/test-roll-tsibble.R | 2 tsibble-0.8.0/tsibble/tests/testthat/test-subset.R | 4 tsibble-0.8.0/tsibble/tests/testthat/test-tidyr.R | 35 - tsibble-0.8.0/tsibble/tests/testthat/test-timewise.R | 4 tsibble-0.8.0/tsibble/tests/testthat/test-ts2tsibble.R | 9 tsibble-0.8.0/tsibble/tests/testthat/test-tsibble.R | 160 +++- tsibble-0.8.0/tsibble/vignettes/faq.Rmd | 9 tsibble-0.8.0/tsibble/vignettes/implicit-na.Rmd | 1 tsibble-0.8.0/tsibble/vignettes/intro-tsibble.Rmd | 18 tsibble-0.8.0/tsibble/vignettes/window.Rmd | 3 114 files changed, 1610 insertions(+), 1649 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-28 0.5.5
Title: Rank Normal Transformation Omnibus Test
Description: Genetic association tests that use the rank-based inverse normal transformation (INT). These tests are recommend for continuous traits with non-normally distributed residuals. INT-based tests robustly control the type I error in settings where standard linear regression does not. Moreover, INT-based tests dominate standard linear regression in terms of power. INT-based tests may be classified into two types: tests that directly transform the phenotype (D-INT) and tests that transform phenotypic residuals (I-INT). Our omnibus test (O-INT) adaptively combines D-INT and I-INT into a single robust and statistically powerful approach.
Author: Zachary McCaw [aut, cre]
Maintainer: Zachary McCaw <zmccaw@g.harvard.edu>
Diff between RNOmni versions 0.6.0 dated 2019-01-12 and 0.7.1 dated 2019-04-28
RNOmni-0.6.0/RNOmni/man/AvgCorr.Rd |only RNOmni-0.6.0/RNOmni/man/BootCorr.Rd |only RNOmni-0.6.0/RNOmni/man/OmniP.Rd |only RNOmni-0.7.1/RNOmni/DESCRIPTION | 10 - RNOmni-0.7.1/RNOmni/MD5 | 32 +--- RNOmni-0.7.1/RNOmni/NAMESPACE | 9 - RNOmni-0.7.1/RNOmni/R/BAT.R | 26 +-- RNOmni-0.7.1/RNOmni/R/DINT.R | 2 RNOmni-0.7.1/RNOmni/R/IINT.R | 27 +-- RNOmni-0.7.1/RNOmni/R/OINT.R | 243 +++++++------------------------ RNOmni-0.7.1/RNOmni/inst/doc/RNOmni.R | 63 +++----- RNOmni-0.7.1/RNOmni/inst/doc/RNOmni.Rmd | 73 ++++----- RNOmni-0.7.1/RNOmni/inst/doc/RNOmni.html | 223 ++++++++++++---------------- RNOmni-0.7.1/RNOmni/man/BAT.Rd | 2 RNOmni-0.7.1/RNOmni/man/DINT.Rd | 2 RNOmni-0.7.1/RNOmni/man/IINT.Rd | 2 RNOmni-0.7.1/RNOmni/man/OINT.Rd | 49 ------ RNOmni-0.7.1/RNOmni/man/OINTp.Rd |only RNOmni-0.7.1/RNOmni/vignettes/RNOmni.Rmd | 73 ++++----- 19 files changed, 317 insertions(+), 519 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-22 2.0.9
2019-01-18 2.0.7
2018-08-17 2.0.6
2018-07-17 2.0.5
2018-07-15 2.0.4
2018-07-01 2.0.3
2018-05-23 1.6.4
2017-10-31 1.6.2
2017-09-22 1.6.1
2017-08-22 1.6.0
2017-07-18 1.5.1
2017-06-12 1.4.6
2017-05-03 1.4.4
2017-02-09 1.4.2
2016-12-31 1.4.1
Title: High-Dimensional Variable Selection with Presence-Only Data
Description: Efficient algorithm for solving PU (Positive and Unlabeled) problem in low or high dimensional setting with lasso or group lasso penalty. The algorithm uses Maximization-Minorization and (block) coordinate descent. Sparse calculation and parallel computing are supported for the computational speed-up. See Hyebin Song, Garvesh Raskutti (2018) <arXiv:1711.08129>.
Author: Hyebin Song [aut, cre],
Garvesh Raskutti [aut]
Maintainer: Hyebin Song <hsong56@wisc.edu>
Diff between PUlasso versions 3.2.2 dated 2019-02-28 and 3.2.3 dated 2019-04-28
DESCRIPTION | 10 - MD5 | 32 ++-- R/PUlasso.R | 5 R/RcppExports.R | 8 - R/cv.grpPUlasso.R | 24 +-- R/grpPUlasso.R | 287 ++++++++++++++++++++++++----------------- build/vignette.rds |binary inst/doc/PUlasso-vignette.html | 77 +++++++---- man/PUlasso-package.Rd | 5 man/cv.grpPUlasso.Rd | 17 +- man/grpPUlasso.Rd | 12 + src/LUfit.cpp | 158 ++++++++++++++-------- src/LUfit.h | 6 src/RcppExports.cpp | 18 +- src/cppWrappers.cpp | 6 src/groupLasso.cpp | 76 +++++----- src/groupLasso.h | 1 17 files changed, 439 insertions(+), 303 deletions(-)
Title: Bayesian Model Selection and Averaging for Non-Local and Local
Priors
Description: Bayesian model selection and averaging for regression and mixtures for non-local and selected local priors.
Author: David Rossell, John D. Cook, Donatello Telesca, P. Roebuck
Maintainer: David Rossell <rosselldavid@gmail.com>
Diff between mombf versions 2.2.2 dated 2019-04-25 and 2.2.3 dated 2019-04-28
mombf-2.2.2/mombf/cleanup |only mombf-2.2.3/mombf/DESCRIPTION | 6 +++--- mombf-2.2.3/mombf/MD5 | 4 ++-- mombf-2.2.3/mombf/src/Makevars |only 4 files changed, 5 insertions(+), 5 deletions(-)
Title: Toolbox for Model Building and Forecasting
Description: Implements functions and instruments for regression model building and its
application to forecasting. The main scope of the package is in variables selection
and models specification for cases of time series data. This includes promotional
modelling, selection between different dynamic regressions with non-standard
distributions of errors, selection based on cross validation, solutions to the fat
regression model problem and more. Models developed in the package are tailored
specifically for forecasting purposes. So as a results there are several methods
that allow producing forecasts from these models and visualising them.
Author: Ivan Svetunkov [aut, cre] (Lecturer at Centre for Marketing Analytics
and Forecasting, Lancaster University, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between greybox versions 0.5.0 dated 2019-04-21 and 0.5.1 dated 2019-04-28
DESCRIPTION | 8 - MD5 | 83 ++++++------- NAMESPACE | 2 NEWS | 19 +++ R/alm.R | 26 ++-- R/depricator.R |only R/determination.R | 17 +- R/error-measures.R | 2 R/lmCombine.R | 81 +++++++------ R/lmDynamic.R | 83 +++++++------ R/methods.R | 264 +++++++++++++++++++++++++++++-------------- R/nemenyi.R | 24 +-- R/rmc.R | 41 +++--- R/ro.R | 22 ++- R/stepwise.R | 29 ++-- R/xregExpander.R | 31 ++--- R/xregMultiplier.R | 15 +- R/xregTransformer.R | 15 +- README.md | 2 build/partial.rdb |binary inst/doc/alm.R | 3 inst/doc/alm.Rmd | 6 inst/doc/alm.html | 196 ++++++++++++++++--------------- inst/doc/greybox.R | 8 - inst/doc/greybox.Rmd | 32 ++++- inst/doc/greybox.html | 22 ++- inst/doc/maUsingGreybox.html | 4 inst/doc/ro.html | 22 +-- man/alm.Rd | 10 - man/determination.Rd | 6 man/lmCombine.Rd | 14 +- man/lmDynamic.Rd | 10 - man/measures.Rd | 2 man/nparam.Rd | 3 man/predict.greybox.Rd | 41 +++++- man/rmc.Rd | 14 +- man/ro.Rd | 9 - man/stepwise.Rd | 11 + man/xregExpander.Rd | 9 - man/xregMultiplier.Rd | 7 - man/xregTransformer.Rd | 7 - vignettes/alm.Rmd | 6 vignettes/greybox.Rmd | 32 ++++- 43 files changed, 753 insertions(+), 485 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-25 0.4.6
2018-01-26 0.3.2
2017-12-13 0.3.1
2017-11-30 0.3.0
2017-11-03 0.2.1
2017-10-10 0.1.3