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Title: Penalized Quantile Regression
Description: Performs penalized quantile regression for LASSO, SCAD and MCP functions including group penalties. Provides a function that automatically generates lambdas and evaluates different models with cross validation or BIC, including a large p version of BIC.
Author: Ben Sherwood [aut, cre], Adam Maidman [ctb]
Maintainer: Ben Sherwood <ben.sherwood@ku.edu>
Diff between rqPen versions 2.0 dated 2017-05-16 and 2.1 dated 2019-05-01
DESCRIPTION | 8 - LICENSE | 2 MD5 | 34 +++---- NAMESPACE | 2 NEWS | 8 + R/QICD_functions.R | 36 +++++-- R/mainFunctions.R | 232 +++++++++++++++++++++++++++++++++++++++++++++---- R/workHorse.R | 19 ++-- man/QICD.Rd | 2 man/QICD.master.Rd | 6 - man/check.Rd | 2 man/coef.cv.rq.pen.Rd | 4 man/cv.rq.group.pen.Rd | 3 man/cv.rq.pen.Rd | 12 +- man/cv_plots.Rd | 4 man/model_eval.Rd | 3 man/rq.lasso.fit.Rd | 4 man/rq.nc.fit.Rd | 3 18 files changed, 306 insertions(+), 78 deletions(-)
Title: Graph-Based Sequential Change-Point Detection for Streaming Data
Description: Uses an approach based on k-nearest neighbor information to sequentially detect change-points. Offers analytic approximations for false discovery control given user-specified average run length. Can be applied to any type of data (high-dimensional, non-Euclidean, etc.) as long as a reasonable similarity measure is available. See references (1) Chen, H. (2019) Sequential change-point detection based on nearest neighbors. The Annals of Statistics, 47(3):1381-1407. (2) Chu, L. and Chen, H. (2018) Sequential change-point detection for high-dimensional and non-Euclidean data <arXiv:1810.05973>.
Author: Hao Chen and Lynna Chu
Maintainer: Hao Chen <hxchen@ucdavis.edu>
Diff between gStream versions 0.1.0 dated 2018-10-24 and 0.2.0 dated 2019-05-01
DESCRIPTION | 10 +-- MD5 | 8 +- R/gStream.R | 154 ++++++++++++++++++++++++++++++++----------------- man/gStream-package.Rd | 25 +++---- man/gstream.Rd | 27 ++++---- 5 files changed, 137 insertions(+), 87 deletions(-)
Title: Get Images Out of DICOM Format Quickly
Description: Provides tools to sort DICOM-format medical image files, and
convert them to NIfTI-1 format.
Author: Jon Clayden [aut, cre],
Chris Rorden [aut],
Martin J Fiedler [cph],
Cong Xu [cph],
Pascal Gloor [cph]
Maintainer: Jon Clayden <code@clayden.org>
Diff between divest versions 0.8.0 dated 2019-04-29 and 0.8.1 dated 2019-05-01
DESCRIPTION | 8 +- LICENCE | 2 MD5 | 10 +- NEWS | 8 ++ src/dcm2niix/nii_dicom_batch.cpp | 132 +++++++++++++++++++++++++-------------- tests/testthat/test-10-qa.R | 4 - 6 files changed, 107 insertions(+), 57 deletions(-)
Title: Utilities for Handling Strings and Text
Description: Utilities for handling character vectors
that store human-readable text (either plain or with
markup, such as HTML or LaTeX). The package provides,
in particular, functions that help with the
preparation of plain-text reports (e.g. for expanding
and aligning strings that form the lines of such
reports); the package also provides generic functions for
transforming R objects to HTML and to plain text.
Author: Enrico Schumann [aut, cre] (<https://orcid.org/0000-0001-7601-6576>)
Maintainer: Enrico Schumann <es@enricoschumann.net>
Diff between textutils versions 0.1-9 dated 2018-08-17 and 0.1-11 dated 2019-05-01
DESCRIPTION | 11 MD5 | 61 NAMESPACE | 57 NEWS | 104 R/functions.R | 5072 ++++++++++++++++++++-------------------- README.md | 74 build/partial.rdb |binary build/vignette.rds |binary inst/doc/btable.R | 66 inst/doc/btable.Rnw | 160 - inst/doc/btable.pdf |binary inst/unitTests/runTests.R | 44 inst/unitTests/test_results.txt | 52 inst/unitTests/ut_text.R | 117 man/HTMLdecode.Rd | 97 man/TeXencode.Rd | 90 man/TeXunits.Rd | 112 man/btable.Rd | 108 man/dctable.Rd |only man/fill_in.Rd | 116 man/here.Rd |only man/latexrule.Rd | 86 man/rmrp.Rd | 72 man/spaces.Rd | 70 man/strexp.Rd | 88 man/textutils-package.Rd | 51 man/title_case.Rd | 76 man/toHTML.Rd | 160 - man/toLatex.data.frame.Rd |only man/toText.Rd | 112 man/trim.Rd | 77 man/valign.Rd | 94 vignettes/btable.Rnw | 160 - 33 files changed, 3800 insertions(+), 3587 deletions(-)
Title: Tools for working with the National Hydrography Dataset
Description: Tools for working with the National Hydrography Dataset, with
functions for querying, downloading, and networking both the NHD
<https://www.usgs.gov/core-science-systems/ngp/national-hydrography>
and NHDPlus <http://www.horizon-systems.com/nhdplus> datasets.
Author: Joseph Stachelek [aut, cre] (<https://orcid.org/0000-0002-5924-2464>)
Maintainer: Joseph Stachelek <stachel2@msu.edu>
Diff between nhdR versions 0.5.1 dated 2019-02-19 and 0.5.2 dated 2019-05-01
DESCRIPTION | 6 ++-- MD5 | 42 ++++++++++++++++--------------- NEWS.md | 6 ++++ R/load.R | 17 ++++++++++-- R/network.R | 2 - R/query.R | 2 - R/utils.R | 25 ++++++++++++++++-- README.md | 30 ++++++++++++---------- build/vignette.rds |binary inst/doc/demo.html | 11 +++++--- inst/doc/flow.html | 9 ++++-- inst/doc/network.html | 11 +++++--- man/extract_network.Rd | 2 - man/figures/README-unnamed-chunk-4-1.png |only man/leaf_reaches.Rd | 2 - man/nhd_load.Rd | 2 - man/nhd_plus_load.Rd | 2 - man/nhd_plus_query.Rd | 2 - man/terminal_reaches.Rd | 2 - tests/testthat/test-get.R | 17 +++++++----- tests/testthat/test-load.R |only tests/testthat/test-network.R | 5 ++- tests/testthat/test-query.R | 17 ++++++++++++ 23 files changed, 142 insertions(+), 70 deletions(-)
Title: Model Implied Instrumental Variable (MIIV) Estimation of
Structural Equation Models
Description: Functions for estimating structural equation models using
instrumental variables.
Author: Zachary Fisher [aut, cre],
Kenneth Bollen [aut],
Kathleen Gates [aut],
Mikko Rönkkö [aut]
Maintainer: Zachary Fisher <fish.zachary@gmail.com>
Diff between MIIVsem versions 0.5.3 dated 2019-01-19 and 0.5.4 dated 2019-05-01
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/estimatesTable.R | 1 + R/factorScores.R | 18 +++++++++++++++++- R/fitFinalGimmeModels.R | 17 ++++++++++------- R/miivs.R | 20 +++++++++++++++----- man/miive.Rd | 12 ++++++------ man/processData.Rd | 4 ++-- man/summary.miive.Rd | 4 ++-- man/summary.miivs.Rd | 3 ++- 10 files changed, 68 insertions(+), 37 deletions(-)
Title: Effects and Importances of Model Ingredients
Description: Collection of tools for assessment of feature importance and feature effects.
Key functions are:
feature_importance() for assessment of global level feature importance,
ceteris_paribus() for calculation of the what-if plots,
partial_dependency() for partial dependency plots,
conditional_dependency() for conditional dependency plots,
accumulated_dependency() for accumulated local effects plots,
aggregate_profiles() and cluster_profiles() for aggregation of ceteris paribus profiles,
theme_drwhy() with a 'ggplot2' skin for all plots,
generic print() and plot() for better usability of selected explainers.
The package 'ingredients' is a part of the 'DrWhy.AI' universe (Biecek 2018) <arXiv:1806.08915>.
Author: Przemyslaw Biecek [aut, cre] (<https://orcid.org/0000-0001-8423-1823>),
Hubert Baniecki [ctb]
Maintainer: Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Diff between ingredients versions 0.3.1 dated 2019-04-09 and 0.3.3 dated 2019-05-01
ingredients-0.3.1/ingredients/man/show_aggreagated_profiles.Rd |only ingredients-0.3.3/ingredients/DESCRIPTION | 8 ingredients-0.3.3/ingredients/MD5 | 64 ++++--- ingredients-0.3.3/ingredients/NAMESPACE | 9 - ingredients-0.3.3/ingredients/NEWS.md | 10 + ingredients-0.3.3/ingredients/R/aggreagate_profiles.R | 2 ingredients-0.3.3/ingredients/R/calculate_oscillations.R | 1 ingredients-0.3.3/ingredients/R/ceteris_paribus.R | 32 +-- ingredients-0.3.3/ingredients/R/ceteris_paribus_2d.R | 7 ingredients-0.3.3/ingredients/R/cluster_profiles.R | 4 ingredients-0.3.3/ingredients/R/describe.R |only ingredients-0.3.3/ingredients/R/plot_aggregated_ceteris_paribus_explainer.R | 18 +- ingredients-0.3.3/ingredients/R/plot_ceteris_paribus_explainer.R | 86 +++++++++- ingredients-0.3.3/ingredients/R/print_ceteris_paribus_descriptions.R |only ingredients-0.3.3/ingredients/R/select_neighbours.R | 4 ingredients-0.3.3/ingredients/R/show_aggregated_profiles.R | 8 ingredients-0.3.3/ingredients/R/show_profiles.R |only ingredients-0.3.3/ingredients/R/show_residuals.R |only ingredients-0.3.3/ingredients/R/show_rugs.R | 4 ingredients-0.3.3/ingredients/R/theme_drwhy.R | 3 ingredients-0.3.3/ingredients/man/aggregate_profiles.Rd | 2 ingredients-0.3.3/ingredients/man/calculate_oscillations.Rd | 1 ingredients-0.3.3/ingredients/man/ceteris_paribus.Rd | 4 ingredients-0.3.3/ingredients/man/ceteris_paribus_2d.Rd | 5 ingredients-0.3.3/ingredients/man/cluster_profiles.Rd | 4 ingredients-0.3.3/ingredients/man/describe.Rd |only ingredients-0.3.3/ingredients/man/plot.aggregated_profiles_explainer.Rd | 13 - ingredients-0.3.3/ingredients/man/plot.ceteris_paribus_explainer.Rd | 18 +- ingredients-0.3.3/ingredients/man/print.ceteris_paribus_descriptions.Rd |only ingredients-0.3.3/ingredients/man/show_aggregated_profiles.Rd |only ingredients-0.3.3/ingredients/man/show_profiles.Rd |only ingredients-0.3.3/ingredients/man/show_residuals.Rd |only ingredients-0.3.3/ingredients/man/show_rugs.Rd | 4 ingredients-0.3.3/ingredients/tests/testthat/test_aggregated_profiles.R | 6 ingredients-0.3.3/ingredients/tests/testthat/test_cluster_profiles.R | 7 ingredients-0.3.3/ingredients/tests/testthat/test_cluster_profiles_describe.R |only ingredients-0.3.3/ingredients/tests/testthat/test_plotD3.R | 2 ingredients-0.3.3/ingredients/tests/testthat/test_show_profiles.R |only ingredients-0.3.3/ingredients/tests/testthat/test_single_variable.R | 2 39 files changed, 232 insertions(+), 96 deletions(-)
Title: Covariate Balance Tables and Plots
Description: Generate balance tables and plots for covariates of groups preprocessed through matching, weighting or subclassification, for example, using propensity scores. Includes integration with 'MatchIt', 'twang', 'Matching', 'optmatch', 'CBPS', 'ebal', 'WeightIt', and 'designmatch' for assessing balance on the output of their preprocessing functions. Users can also specify data for balance assessment not generated through the above packages. Also included are methods for assessing balance in clustered or multiply imputed data sets or data sets with longitudinal treatments.
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between cobalt versions 3.6.1 dated 2019-01-16 and 3.7.0 dated 2019-05-01
DESCRIPTION | 6 MD5 | 84 ++--- NAMESPACE | 2 NEWS.md | 24 + R/SHARED.R | 186 ++++++------ R/bal.plot.R | 11 R/bal.tab.R | 29 + R/base.bal.tab.R | 143 ++++++--- R/functions_for_processing.R | 307 +++++++++++++++----- R/get.w.R | 53 +-- R/love.plot.R | 425 ++++++++++++++++------------- R/print.bal.tab.R | 134 ++++++--- R/utilities.R | 4 R/x2base.R | 69 +++- build/partial.rdb |binary build/vignette.rds |binary inst/doc/cobalt_A0_basic_use.R | 26 - inst/doc/cobalt_A0_basic_use.Rmd | 45 +-- inst/doc/cobalt_A0_basic_use.html | 143 +++++---- inst/doc/cobalt_A1_other_packages.html | 23 - inst/doc/cobalt_A2_cluster_imp.R | 39 +- inst/doc/cobalt_A2_cluster_imp.Rmd | 111 +++---- inst/doc/cobalt_A2_cluster_imp.html | 314 ++++++++++----------- inst/doc/cobalt_A3_longitudinal_treat.R | 4 inst/doc/cobalt_A3_longitudinal_treat.Rmd | 8 inst/doc/cobalt_A3_longitudinal_treat.html | 27 - man/bal.tab.CBPS.Rd | 4 man/bal.tab.Match.Rd | 4 man/bal.tab.Rd | 2 man/bal.tab.df.formula.Rd | 4 man/bal.tab.df.formula.list.Rd | 4 man/bal.tab.matchit.Rd | 4 man/bal.tab.ps.Rd | 10 man/bal.tab.weightit.Rd | 4 man/class-bal.tab.cluster.Rd | 4 man/class-bal.tab.imp.Rd | 4 man/class-bal.tab.msm.Rd | 4 man/class-bal.tab.multi.Rd | 4 man/display_options.Rd | 16 - man/love.plot.Rd | 12 vignettes/cobalt_A0_basic_use.Rmd | 45 +-- vignettes/cobalt_A2_cluster_imp.Rmd | 111 +++---- vignettes/cobalt_A3_longitudinal_treat.Rmd | 8 43 files changed, 1433 insertions(+), 1028 deletions(-)
Title: "Finding Groups in Data": Cluster Analysis Extended Rousseeuw et
al.
Description: Methods for Cluster analysis. Much extended the original from
Peter Rousseeuw, Anja Struyf and Mia Hubert,
based on Kaufman and Rousseeuw (1990) "Finding Groups in Data".
Author: Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>),
Peter Rousseeuw [aut] (Fortran original,
<https://orcid.org/0000-0002-3807-5353>),
Anja Struyf [aut] (S original),
Mia Hubert [aut] (S original, <https://orcid.org/0000-0001-6398-4850>),
Kurt Hornik [trl, ctb] (port to R; maintenance(1999-2000),
<https://orcid.org/0000-0003-4198-9911>),
Matthias Studer [ctb],
Pierre Roudier [ctb],
Juan Gonzalez [ctb],
Kamil Kozlowski [ctb],
Erich Schubert [ctb] (fastpam options for pam(),
<https://orcid.org/0000-0001-9143-4880>)
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between cluster versions 2.0.8 dated 2019-04-05 and 2.0.9 dated 2019-05-01
DESCRIPTION | 8 MD5 | 10 build/partial.rdb |binary src/cluster.h | 6 src/mona.c | 104 ++++--- tests/mona.Rout.save | 676 +++++++++++++++++++++++++-------------------------- 6 files changed, 404 insertions(+), 400 deletions(-)
Title: Stochastic Gradient Markov Chain Monte Carlo
Description: Provides functions that performs popular stochastic gradient Markov chain Monte Carlo (SGMCMC) methods on user specified models. The required gradients are automatically calculated using 'TensorFlow' <https://www.tensorflow.org/>, an efficient library for numerical computation. This means only the log likelihood and log prior functions need to be specified. The methods implemented include stochastic gradient Langevin dynamics (SGLD), stochastic gradient Hamiltonian Monte Carlo (SGHMC), stochastic gradient Nose-Hoover thermostat (SGNHT) and their respective control variate versions for increased efficiency. References: M. Welling, Y. W. Teh (2011) <http://www.icml-2011.org/papers/398_icmlpaper.pdf>; T. Chen, E. B. Fox, C. E. Guestrin (2014) <arXiv:1402.4102>; N. Ding, Y. Fang, R. Babbush, C. Chen, R. D. Skeel, H. Neven (2014) <https://papers.nips.cc/paper/5592-bayesian-sampling-using-stochastic-gradient-thermostats>; J. Baker, P. Fearnhead, E. B. Fox, C. Nemeth (2017) <arXiv:1706.05439>.
Author: Jack Baker [aut, cre, cph],
Christopher Nemeth [aut, cph],
Paul Fearnhead [aut, cph],
Emily B. Fox [aut, cph],
STOR-i [cph]
Maintainer: Jack Baker <j.baker1@lancaster.ac.uk>
Diff between sgmcmc versions 0.2.3 dated 2018-09-14 and 0.2.4 dated 2019-05-01
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ NEWS.md | 4 ++++ R/controlVariates.R | 2 +- R/install.R | 3 +-- R/zzz.R | 2 ++ README.md | 15 ++++++++++++++- inst/doc/logisticRegression.Rmd | 2 +- inst/doc/logisticRegression.html | 2 +- inst/doc/nn.Rmd | 2 +- inst/doc/nn.html | 2 +- vignettes/logisticRegression.Rmd | 2 +- vignettes/nn.Rmd | 2 +- 13 files changed, 43 insertions(+), 25 deletions(-)
Title: Create Blogs and Websites with R Markdown
Description: Write blog posts and web pages in R Markdown. This package supports
the static site generator 'Hugo' (<https://gohugo.io>) best, and it also
supports 'Jekyll' (<http://jekyllrb.com>) and 'Hexo' (<https://hexo.io>).
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
Beilei Bian [ctb],
Forest Fang [ctb],
Garrick Aden-Buie [ctb],
Hiroaki Yutani [ctb],
Ian Lyttle [ctb],
JJ Allaire [ctb],
Kevin Ushey [ctb],
Leonardo Collado-Torres [ctb],
Xianying Tan [ctb],
Raniere Silva [ctb],
RStudio Inc [cph]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between blogdown versions 0.11 dated 2019-03-11 and 0.12 dated 2019-05-01
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 8 +++++++- R/hugo.R | 7 +++++++ 4 files changed, 20 insertions(+), 7 deletions(-)
Title: Function Collection Related to Plotting and Hydrology
Description: Draw horizontal histograms, color scattered points by 3rd dimension,
enhance date- and log-axis plots, zoom in X11 graphics, trace errors and warnings,
use the unit hydrograph in a linear storage cascade, convert lists to data.frames and arrays,
fit multiple functions.
Author: Berry Boessenkool
Maintainer: Berry Boessenkool <berry-b@gmx.de>
Diff between berryFunctions versions 1.17.0 dated 2018-03-25 and 1.18.2 dated 2019-05-01
berryFunctions-1.17.0/berryFunctions/R/ci.R |only berryFunctions-1.17.0/berryFunctions/R/divPal.R |only berryFunctions-1.17.0/berryFunctions/R/funTinn.R |only berryFunctions-1.17.0/berryFunctions/R/seqPal.R |only berryFunctions-1.17.0/berryFunctions/R/showPal.R |only berryFunctions-1.17.0/berryFunctions/man/ci.Rd |only berryFunctions-1.17.0/berryFunctions/man/funTinn.Rd |only berryFunctions-1.18.2/berryFunctions/DESCRIPTION | 10 berryFunctions-1.18.2/berryFunctions/MD5 | 228 +- berryFunctions-1.18.2/berryFunctions/NAMESPACE | 10 berryFunctions-1.18.2/berryFunctions/NEWS | 894 +++++----- berryFunctions-1.18.2/berryFunctions/R/addRows.R | 3 berryFunctions-1.18.2/berryFunctions/R/checkFile.R | 20 berryFunctions-1.18.2/berryFunctions/R/ciBand.R | 5 berryFunctions-1.18.2/berryFunctions/R/climateGraph.R | 56 berryFunctions-1.18.2/berryFunctions/R/colPoints.R | 61 berryFunctions-1.18.2/berryFunctions/R/colPointsLegend.R | 2 berryFunctions-1.18.2/berryFunctions/R/combineFiles.R | 3 berryFunctions-1.18.2/berryFunctions/R/createPres.R | 70 berryFunctions-1.18.2/berryFunctions/R/dataStr.R | 34 berryFunctions-1.18.2/berryFunctions/R/exTime.R | 1 berryFunctions-1.18.2/berryFunctions/R/funSource.R | 70 berryFunctions-1.18.2/berryFunctions/R/getColumn.R | 10 berryFunctions-1.18.2/berryFunctions/R/insertRows.R | 30 berryFunctions-1.18.2/berryFunctions/R/instGit.R | 1 berryFunctions-1.18.2/berryFunctions/R/l2array.R | 18 berryFunctions-1.18.2/berryFunctions/R/l2df.R | 7 berryFunctions-1.18.2/berryFunctions/R/learnVocab.R |only berryFunctions-1.18.2/berryFunctions/R/linLogTrans.R | 11 berryFunctions-1.18.2/berryFunctions/R/linReg.R | 32 berryFunctions-1.18.2/berryFunctions/R/locLine.R | 2 berryFunctions-1.18.2/berryFunctions/R/logAxis.R | 4 berryFunctions-1.18.2/berryFunctions/R/logVals.R | 2 berryFunctions-1.18.2/berryFunctions/R/lsc.R | 7 berryFunctions-1.18.2/berryFunctions/R/monthAxis.R | 22 berryFunctions-1.18.2/berryFunctions/R/movAv.R | 3 berryFunctions-1.18.2/berryFunctions/R/nameSample.R | 8 berryFunctions-1.18.2/berryFunctions/R/newFilename.R | 4 berryFunctions-1.18.2/berryFunctions/R/openFile.R | 3 berryFunctions-1.18.2/berryFunctions/R/pal.R |only berryFunctions-1.18.2/berryFunctions/R/panelDim.R | 2 berryFunctions-1.18.2/berryFunctions/R/pdfpng.R | 6 berryFunctions-1.18.2/berryFunctions/R/quantileMean.R | 71 berryFunctions-1.18.2/berryFunctions/R/rainbow2.R | 1 berryFunctions-1.18.2/berryFunctions/R/roundedRect.R | 1 berryFunctions-1.18.2/berryFunctions/R/smallPlot.R | 2 berryFunctions-1.18.2/berryFunctions/R/sortDF.R | 14 berryFunctions-1.18.2/berryFunctions/R/spiralDate.R | 4 berryFunctions-1.18.2/berryFunctions/R/spiralDateAnim.R | 4 berryFunctions-1.18.2/berryFunctions/R/tableColVal.R | 2 berryFunctions-1.18.2/berryFunctions/R/testExamples.R |only berryFunctions-1.18.2/berryFunctions/R/timeAxis.R | 1 berryFunctions-1.18.2/berryFunctions/R/timer.R | 2 berryFunctions-1.18.2/berryFunctions/R/toupper1.R | 1 berryFunctions-1.18.2/berryFunctions/R/tryStack.R | 4 berryFunctions-1.18.2/berryFunctions/README.md | 13 berryFunctions-1.18.2/berryFunctions/build/vignette.rds |binary berryFunctions-1.18.2/berryFunctions/inst/doc/berryFunctions.R | 7 berryFunctions-1.18.2/berryFunctions/inst/doc/berryFunctions.Rmd | 9 berryFunctions-1.18.2/berryFunctions/inst/doc/berryFunctions.html | 657 ++++--- berryFunctions-1.18.2/berryFunctions/inst/extdata/Rlogo.png |only berryFunctions-1.18.2/berryFunctions/man/addRows.Rd | 3 berryFunctions-1.18.2/berryFunctions/man/betaPlot.Rd | 11 berryFunctions-1.18.2/berryFunctions/man/betaPlotComp.Rd | 6 berryFunctions-1.18.2/berryFunctions/man/catPal.Rd |only berryFunctions-1.18.2/berryFunctions/man/checkFile.Rd | 9 berryFunctions-1.18.2/berryFunctions/man/classify.Rd | 4 berryFunctions-1.18.2/berryFunctions/man/climateGraph.Rd | 77 berryFunctions-1.18.2/berryFunctions/man/colPoints.Rd | 47 berryFunctions-1.18.2/berryFunctions/man/colPointsHist.Rd | 11 berryFunctions-1.18.2/berryFunctions/man/colPointsLegend.Rd | 12 berryFunctions-1.18.2/berryFunctions/man/compareFiles.Rd | 4 berryFunctions-1.18.2/berryFunctions/man/createPres.Rd | 14 berryFunctions-1.18.2/berryFunctions/man/dataStr.Rd | 14 berryFunctions-1.18.2/berryFunctions/man/divPal.Rd | 10 berryFunctions-1.18.2/berryFunctions/man/dupes.Rd | 4 berryFunctions-1.18.2/berryFunctions/man/expReg.Rd | 7 berryFunctions-1.18.2/berryFunctions/man/funSource.Rd | 18 berryFunctions-1.18.2/berryFunctions/man/funnelPlot.Rd | 8 berryFunctions-1.18.2/berryFunctions/man/getColumn.Rd | 6 berryFunctions-1.18.2/berryFunctions/man/horizHist.Rd | 4 berryFunctions-1.18.2/berryFunctions/man/insertRows.Rd | 27 berryFunctions-1.18.2/berryFunctions/man/l2array.Rd | 16 berryFunctions-1.18.2/berryFunctions/man/l2df.Rd | 4 berryFunctions-1.18.2/berryFunctions/man/learnVocab.Rd |only berryFunctions-1.18.2/berryFunctions/man/legendmt.Rd | 3 berryFunctions-1.18.2/berryFunctions/man/linLogHist.Rd | 4 berryFunctions-1.18.2/berryFunctions/man/linLogTrans.Rd | 19 berryFunctions-1.18.2/berryFunctions/man/linReg.Rd | 27 berryFunctions-1.18.2/berryFunctions/man/locLine.Rd | 2 berryFunctions-1.18.2/berryFunctions/man/logAxis.Rd | 8 berryFunctions-1.18.2/berryFunctions/man/logHist.Rd | 3 berryFunctions-1.18.2/berryFunctions/man/lsc.Rd | 7 berryFunctions-1.18.2/berryFunctions/man/mReg.Rd | 14 berryFunctions-1.18.2/berryFunctions/man/monthAxis.Rd | 17 berryFunctions-1.18.2/berryFunctions/man/movAv.Rd | 3 berryFunctions-1.18.2/berryFunctions/man/na9.Rd | 4 berryFunctions-1.18.2/berryFunctions/man/nameSample.Rd | 8 berryFunctions-1.18.2/berryFunctions/man/newFilename.Rd | 4 berryFunctions-1.18.2/berryFunctions/man/normPlot.Rd | 10 berryFunctions-1.18.2/berryFunctions/man/openFile.Rd | 2 berryFunctions-1.18.2/berryFunctions/man/panelDim.Rd | 6 berryFunctions-1.18.2/berryFunctions/man/pdfpng.Rd | 9 berryFunctions-1.18.2/berryFunctions/man/quantileBands.Rd | 8 berryFunctions-1.18.2/berryFunctions/man/quantileMean.Rd | 71 berryFunctions-1.18.2/berryFunctions/man/round0.Rd | 4 berryFunctions-1.18.2/berryFunctions/man/roundedRect.Rd | 7 berryFunctions-1.18.2/berryFunctions/man/runAxis.Rd | 3 berryFunctions-1.18.2/berryFunctions/man/seasonality.Rd | 15 berryFunctions-1.18.2/berryFunctions/man/seqPal.Rd | 12 berryFunctions-1.18.2/berryFunctions/man/showPal.Rd | 3 berryFunctions-1.18.2/berryFunctions/man/smallPlot.Rd | 7 berryFunctions-1.18.2/berryFunctions/man/sortDF.Rd | 10 berryFunctions-1.18.2/berryFunctions/man/spiralDate.Rd | 5 berryFunctions-1.18.2/berryFunctions/man/tableColVal.Rd | 6 berryFunctions-1.18.2/berryFunctions/man/testExamples.Rd |only berryFunctions-1.18.2/berryFunctions/man/textField.Rd | 6 berryFunctions-1.18.2/berryFunctions/man/timeAxis.Rd | 7 berryFunctions-1.18.2/berryFunctions/man/timer.Rd | 2 berryFunctions-1.18.2/berryFunctions/man/truncMessage.Rd | 4 berryFunctions-1.18.2/berryFunctions/man/tryStack.Rd | 8 berryFunctions-1.18.2/berryFunctions/vignettes/berryFunctions.Rmd | 9 122 files changed, 1793 insertions(+), 1292 deletions(-)
More information about berryFunctions at CRAN
Permanent link
Title: Hierarchical Exponential-Family Random Graph Models
Description: Hierarchical exponential-family random graph models with local dependence.
Author: Michael Schweinberger <michael.schweinberger@rice.edu> [aut, cre], Mark S. Handcock <handcock@ucla.edu> [aut], Sergii Babkin <babkin.sergii@gmail.com> [aut], Jonathan Stewart <jonathan.stewart@rice.edu> [aut], Duy Vu <duy.vu@unimelb.edu.au> [aut], Pamela Luna <pamela.luna@rice.edu> [ctb]
Maintainer: Michael Schweinberger <michael.schweinberger@rice.edu>
Diff between hergm versions 4.1-0 dated 2019-03-13 and 4.1-1 dated 2019-05-01
DESCRIPTION | 12 ++++++------ MD5 | 18 +++++++++--------- NAMESPACE | 1 + R/auxiliary_functions.r | 9 ++++++++- R/hergm.R | 7 ++++++- R/hergm.gof.R | 9 ++++++--- R/hergm.simulate.R | 30 ++++++++++++++++++++---------- R/zzz.R | 2 +- man/hergm.Rd | 2 +- man/hergm.simulate.Rd | 6 ++++++ 10 files changed, 64 insertions(+), 32 deletions(-)
Title: Tuned Data Mining in R
Description: Tuned Data Mining in R ('TDMR') performs the complete tuning of a
data mining task (predictive analytics, that is classification and regression).
Preprocessing parameters and modeling parameters can be tuned simultaneously.
It incorporates a variety of tuners (among them 'SPOT' and 'CMA' with package 'rCMA') and
allows integration of additional tuners. Noise handling in the data mining optimization
process is supported, see Koch et al. (2015) <doi:10.1016/j.asoc.2015.01.005>.
Author: Wolfgang Konen <wolfgang.konen@fh-koeln.de>, Patrick Koch
<patrick.koch@fh-koeln.de>
Maintainer: Wolfgang Konen <wolfgang.konen@fh-koeln.de>
Diff between TDMR versions 2.0 dated 2018-05-06 and 2.1 dated 2019-05-01
TDMR-2.0/TDMR/inst/examples/ex_TEST.R |only TDMR-2.0/TDMR/man/powellTuner.Rd |only TDMR-2.1/TDMR/DESCRIPTION | 13 ++--- TDMR-2.1/TDMR/MD5 | 28 +++++----- TDMR-2.1/TDMR/NAMESPACE | 1 TDMR-2.1/TDMR/R/tdmBigLoop.r | 5 + TDMR-2.1/TDMR/R/tdmDispatchTuner.r | 75 +---------------------------- TDMR-2.1/TDMR/R/tdmGeneralUtils.r | 4 - TDMR-2.1/TDMR/R/tdmROCR.r | 2 TDMR-2.1/TDMR/R/tdmStartOther.r | 2 TDMR-2.1/TDMR/inst/demo01cpu/main_cpu.r | 4 - TDMR-2.1/TDMR/inst/doc/index.html | 10 +-- TDMR-2.1/TDMR/man/TDMR-package.Rd | 4 - TDMR-2.1/TDMR/man/tdmBigLoop.Rd | 2 TDMR-2.1/TDMR/man/tdmDispatchTuner.Rd | 2 TDMR-2.1/TDMR/man/tdmROCR.TDMclassifier.Rd | 2 16 files changed, 39 insertions(+), 115 deletions(-)
Title: Utilities for Working with Air Quality Monitoring Data
Description: Utilities for working with air quality monitoring data
with a focus on small particulates (PM2.5) generated by wildfire
smoke. Functions are provided for downloading available data from
the United States 'EPA' <https://www.epa.gov/outdoor-air-quality-data> and
it's 'AirNow' air quality site <https://www.airnow.gov>.
Additional sources of PM2.5 data made accessible by the package include:
'AIRSIS' (password protected) <https://www.oceaneering.com/data-management/>
and 'WRCC' <https://wrcc.dri.edu/cgi-bin/smoke.pl>.
Data compilations are provided by 'PWFSL'
<https://www.fs.fed.us/pnw/pwfsl/>.
Author: Jonathan Callahan [aut, cre],
Rohan Aras [aut],
Zach Dingels [aut],
Jon Hagg [aut],
Jimin Kim [aut],
Hans Martin [aut],
Helen Miller [aut],
Spencer Pease [aut],
Rex Thompson [aut],
Alice Yang [aut]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between PWFSLSmoke versions 1.2.2 dated 2019-04-04 and 1.2.4 dated 2019-05-01
DESCRIPTION | 6 +-- MD5 | 32 +++++++++++++------- NAMESPACE | 4 ++ R/createEmptyMonitor.R |only R/monitor_getCurrentStatus.R | 45 ++++++++++++++++++++++------- R/monitor_map.R | 2 + R/monitor_stamenmap.R |only R/staticmap_getStamenmapBrick.R |only R/staticmap_plotRasterBrick.R |only inst/doc/Maps_and_Timeseries_Plots.R | 14 --------- inst/doc/Maps_and_Timeseries_Plots.Rmd | 14 +++++---- inst/doc/Maps_and_Timeseries_Plots.html | 49 ++++++++++++++++++++------------ inst/doc/PWFSLSmoke.Rmd | 2 - inst/doc/PWFSLSmoke.html | 12 +++---- man/createEmptyMonitor.Rd |only man/monitor_map.Rd | 2 + man/monitor_stamenmap.Rd |only man/staticmap_getStamenmapBrick.Rd |only man/staticmap_plotRasterBrick.Rd |only vignettes/Maps_and_Timeseries_Plots.Rmd | 14 +++++---- vignettes/PWFSLSmoke.Rmd | 2 - 21 files changed, 122 insertions(+), 76 deletions(-)
Title: GNU Privacy Guard for R
Description: Bindings to GnuPG for working with OpenGPG (RFC4880) cryptographic methods.
Includes utilities for public key encryption, creating and verifying digital signatures,
and managing your local keyring. Note that some functionality depends on the version of
GnuPG that is installed on the system. On Windows this package can be used together with
'GPG4Win' which provides a GUI for managing keys and entering passphrases.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between gpg versions 1.1 dated 2019-01-07 and 1.2 dated 2019-05-01
DESCRIPTION | 6 - MD5 | 16 +-- NEWS | 3 build/vignette.rds |binary configure | 2 inst/doc/intro.R | 6 - inst/doc/intro.Rmd | 8 - inst/doc/intro.html | 252 ++++++++++++++++++++++++++-------------------------- vignettes/intro.Rmd | 8 - 9 files changed, 155 insertions(+), 146 deletions(-)
Title: Retrieve and Analyze Information on Clinical Trials from Public
Registers
Description: Provides functions for querying, retrieving and analysing protocol- and results-related information on clinical trials from two public registers, the European Union Clinical Trials Register (EUCTR, <https://www.clinicaltrialsregister.eu/>) and ClinicalTrials.gov (CTGOV, <https://clinicaltrials.gov/>). The information is transformed and then stored in a database (mongo). Functions are provided for accessing and analysing the locally stored information on the clinical trials, as well as for identifying duplicate records. The package is motivated by the need for aggregating and trend-analysing the design, conduct and outcomes across clinical trials.
Author: Ralf Herold [aut, cre] (<https://orcid.org/0000-0002-8148-6748>)
Maintainer: Ralf Herold <ralf.herold@mailbox.org>
Diff between ctrdata versions 0.18 dated 2019-04-11 and 0.18.2 dated 2019-05-01
DESCRIPTION | 7 MD5 | 35 NEWS.md | 24 R/main.R | 105 ++ R/utils.R | 158 ++-- README.md | 66 - build/vignette.rds |binary inst/doc/ctrdata_get_started.R | 28 inst/doc/ctrdata_get_started.Rmd | 98 +- inst/doc/ctrdata_get_started.html | 84 +- inst/doc/ctrdata_usage_examples.R | 59 - inst/doc/ctrdata_usage_examples.Rmd | 98 +- inst/doc/ctrdata_usage_examples.html | 1338 +++++++++++++++++------------------ man/dbFindFields.Rd | 9 man/installCygwinWindowsDoInstall.Rd | 2 man/setProxy.Rd |only tests/testthat/testfunctions.R | 7 vignettes/ctrdata_get_started.Rmd | 98 +- vignettes/ctrdata_usage_examples.Rmd | 98 +- 19 files changed, 1290 insertions(+), 1024 deletions(-)
Title: An Alternative Conflict Resolution Strategy
Description: R's default conflict management system gives the most recently
loaded package precedence. This can make it hard to detect conflicts,
particularly when they arise because a package update creates ambiguity
that did not previously exist. 'conflicted' takes a different approach,
making every conflict an error and forcing you to choose which function
to use.
Author: Hadley Wickham [aut, cre],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between conflicted versions 1.0.2 dated 2019-03-29 and 1.0.3 dated 2019-05-01
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ R/shim.R | 4 ++-- 4 files changed, 12 insertions(+), 8 deletions(-)
Title: R Client for the COLOURlovers API
Description: Provides access to the COLOURlovers <http://www.colourlovers.com/>
API, which offers color inspiration and color palettes.
Author: Andrew Heiss [aut, cre] (<https://orcid.org/0000-0002-3948-3914>),
Thomas J. Leeper [aut] (<https://orcid.org/0000-0003-4097-6326>)
Maintainer: Andrew Heiss <andrew@andrewheiss.com>
Diff between colourlovers versions 0.3.0 dated 2019-04-29 and 0.3.5 dated 2019-05-01
colourlovers-0.3.0/colourlovers/tests/testthat/test.R |only colourlovers-0.3.5/colourlovers/DESCRIPTION | 10 colourlovers-0.3.5/colourlovers/MD5 | 132 ++++++++-- colourlovers-0.3.5/colourlovers/NEWS.md | 11 colourlovers-0.3.5/colourlovers/R/clQuery.r | 18 - colourlovers-0.3.5/colourlovers/R/clcolors.r | 8 colourlovers-0.3.5/colourlovers/R/cllovers.r | 2 colourlovers-0.3.5/colourlovers/R/clpalettes.r | 26 + colourlovers-0.3.5/colourlovers/R/clpatterns.r | 22 + colourlovers-0.3.5/colourlovers/R/clpng.r | 25 - colourlovers-0.3.5/colourlovers/R/clstats.r | 9 colourlovers-0.3.5/colourlovers/man/clcolors.Rd | 4 colourlovers-0.3.5/colourlovers/man/clpalettes.Rd | 4 colourlovers-0.3.5/colourlovers/man/clpatterns.Rd | 4 colourlovers-0.3.5/colourlovers/man/clpng.Rd | 9 colourlovers-0.3.5/colourlovers/man/clstats.Rd | 5 colourlovers-0.3.5/colourlovers/tests/figs |only colourlovers-0.3.5/colourlovers/tests/testthat/helper.R | 1 colourlovers-0.3.5/colourlovers/tests/testthat/test-colors.R |only colourlovers-0.3.5/colourlovers/tests/testthat/test-lovers.R |only colourlovers-0.3.5/colourlovers/tests/testthat/test-palettes.R |only colourlovers-0.3.5/colourlovers/tests/testthat/test-patterns.R |only colourlovers-0.3.5/colourlovers/tests/testthat/test-plots.R |only colourlovers-0.3.5/colourlovers/tests/testthat/test-statistics.R |only colourlovers-0.3.5/colourlovers/tests/testthat/test-warnings-errors.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/color/0000FF-490170.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/color/408080-490170.R | 14 - colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/color/6B4106-490170.R | 14 - colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/color/f06134-490170.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/colors/new-142eb3.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/colors/new-3b207e.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/colors/new-4a8ed6.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/colors/new-4f3aa9.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/colors/new-50eb6b.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/colors/new-6d121e.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/colors/new-8358d0.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/colors/new-849867.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/colors/new-91186d.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/colors/new-98df0b.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/colors/new-bd523d.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/colors/new-c481c0.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/colors/new-cf56ea.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/colors/random-490170.R | 18 - colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/colors/random-ca7c3c.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/colors/top-e8ffb5.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/junk-490170.html |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/lover |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/lovers |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/palette/4643751-596ce0.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/palette/4643792-596ce0.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/palette/4643793-596ce0.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/palettes/new-0cab31.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/palettes/new-100e37.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/palettes/new-11a144.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/palettes/new-142eb3.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/palettes/new-2137f1.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/palettes/new-2c2d78.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/palettes/new-3b207e.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/palettes/new-4431d7.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/palettes/new-4a8ed6.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/palettes/new-4f3aa9.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/palettes/new-6d121e.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/palettes/new-779ad4.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/palettes/new-8358d0.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/palettes/new-849867.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/palettes/new-98df0b.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/palettes/new-c51b97.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/palettes/new-cf56ea.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/palettes/random-490170.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/palettes/top-e8ffb5.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/pattern/1451-490170.R | 14 - colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/pattern/5789044-490170.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/pattern/5794648-490170.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/patterns/new-0cab31.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/patterns/new-100e37.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/patterns/new-11a144.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/patterns/new-142eb3.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/patterns/new-2137f1.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/patterns/new-2c2d78.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/patterns/new-3b207e.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/patterns/new-4a8ed6.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/patterns/new-4b0102.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/patterns/new-4f3aa9.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/patterns/new-6d121e.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/patterns/new-779ad4.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/patterns/new-8358d0.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/patterns/new-849867.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/patterns/new-98df0b.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/patterns/new-c51b97.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/patterns/new-cf56ea.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/patterns/random-490170.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/patterns/top-490170.R | 18 - colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/patterns/top-e8ffb5.R |only colourlovers-0.3.5/colourlovers/tests/www.colourlovers.com/api/stats |only 94 files changed, 246 insertions(+), 122 deletions(-)
Title: Constrained Generalized Additive Model
Description: A constrained generalized additive model is fitted by the cgam routine. Given a set of predictors, each of which may have a shape or order restrictions, the maximum likelihood estimator for the constrained generalized additive model is found using an iteratively re-weighted cone projection algorithm. The ShapeSelect routine chooses a subset of predictor variables and describes the component relationships with the response. For each predictor, the user needs only specify a set of possible shape or order restrictions. A model selection method chooses the shapes and orderings of the relationships as well as the variables. The cone information criterion (CIC) is used to select the best combination of variables and shapes. A genetic algorithm may be used when the set of possible models is large. In addition, the cgam routine implements a two-dimensional isotonic regression using warped-plane splines without additivity assumptions. It can also fit a convex or concave regression surface with triangle splines without additivity assumptions. See Mary C. Meyer (2013)<doi:10.1080/10485252.2013.797577> for more details.
Author: Mary C. Meyer and Xiyue Liao
Maintainer: Xiyue Liao <liaoxiyue2011@gmail.com>
Diff between cgam versions 1.13 dated 2019-04-23 and 1.14 dated 2019-05-01
DESCRIPTION | 8 ++++---- MD5 | 7 ++++--- inst |only man/cgam.Rd | 10 ++++++++-- man/predict.cgam.Rd | 8 ++++---- 5 files changed, 20 insertions(+), 13 deletions(-)
Title: Distance Sampling Detection Function and Abundance Estimation
Description: A simple way of fitting detection functions to distance sampling
data for both line and point transects. Adjustment term selection, left and
right truncation as well as monotonicity constraints and binning are
supported. Abundance and density estimates can also be calculated (via a
Horvitz-Thompson-like estimator) if survey area information is provided.
Author: David Lawrence Miller
Maintainer: Laura Marshall <lhm@st-andrews.ac.uk>
Diff between Distance versions 0.9.7 dated 2017-07-03 and 0.9.8 dated 2019-05-01
DESCRIPTION | 10 +-- MD5 | 41 +++++++------- NEWS | 8 ++ R/AIC.dsmodel.R | 34 ++++++++++-- R/Distance-package.R | 14 ++++- R/checkdata.R | 6 +- R/create.bins.R | 10 +++ R/ds.R | 125 ++++++++++++++++++++++++++++----------------- R/ds.gof.R | 17 +++++- R/gof_ds.R | 26 +++++++-- R/logLik.dsmodel.R | 8 ++ R/summarize_ds_models.R | 14 ++++- inst/CITATION |only man/AIC.dsmodel.Rd | 12 +++- man/Distance-package.Rd | 8 ++ man/create.bins.Rd | 9 +++ man/ds.Rd | 63 +++++++++++++--------- man/ds.gof.Rd | 16 +++++ man/gof_ds.Rd | 30 +++++++++- man/logLik.dsmodel.Rd | 9 +++ man/minke.Rd | 2 man/summarize_ds_models.Rd | 11 +++ 22 files changed, 351 insertions(+), 122 deletions(-)
Title: Flexible Tools for Multiple Imputation
Description: Provides a set of tools that can be used across 'data.frame' and
'imputationList' objects.
Author: James Conigrave
Maintainer: James Conigrave <james.conigrave@gmail.com>
Diff between Conigrave versions 0.4.2 dated 2018-11-06 and 0.4.4 dated 2019-05-01
DESCRIPTION | 16 ++++++++-------- MD5 | 14 +++++++------- NAMESPACE | 2 +- R/Automodel.R | 2 +- R/check_names.R | 5 ++--- R/correlatrix.R | 16 ++++++++-------- R/find_similar.R | 2 +- man/ctrx.Rd | 6 +++--- 8 files changed, 31 insertions(+), 32 deletions(-)
Title: Simple Interface to 'Microsoft Graph'
Description: A simple interface to the 'Microsoft Graph' API <https://docs.microsoft.com/en-us/graph/overview>. 'Graph' is a comprehensive framework for accessing data in various online Microsoft services. Currently, this package aims to provide an R interface only to the 'Azure Active Directory' part, with a view to supporting interoperability of R and 'Azure': users, groups, registered apps and service principals. However it can be easily extended to cover other services.
Author: Hong Ooi [aut, cre],
Microsoft [cph]
Maintainer: Hong Ooi <hongooi@microsoft.com>
Diff between AzureGraph versions 1.0.0 dated 2019-03-31 and 1.0.1 dated 2019-05-01
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 5 +++++ R/call_graph.R | 2 +- R/graph_login.R | 1 + R/ms_graph.R | 44 +++++++++++++++++++++++++++++++++++++++----- README.md | 4 ++++ man/ms_graph.Rd | 17 +++++++++++++++-- 8 files changed, 75 insertions(+), 18 deletions(-)
Title: Working with 'Sapfluxnet' Project Data
Description: Access, modify, aggregate and plot data from the 'Sapfluxnet' project
(<http://sapfluxnet.creaf.cat>), the first global database of sap flow measurements.
Author: Victor Granda [aut, cre] (<https://orcid.org/0000-0002-0469-1991>),
Rafael Poyatos [aut] (<https://orcid.org/0000-0003-0521-2523>),
Victor Flo [aut] (<https://orcid.org/0000-0003-1908-4577>),
Jacob Nelson [ctb] (<https://orcid.org/0000-0002-4663-2420>),
Sapfluxnet Core Team [cph]
Maintainer: Victor Granda <victorgrandagarcia@gmail.com>
Diff between sapfluxnetr versions 0.0.6 dated 2019-03-29 and 0.0.7 dated 2019-05-01
sapfluxnetr-0.0.6/sapfluxnetr/tests/testthat/test-big_tests.R |only sapfluxnetr-0.0.7/sapfluxnetr/DESCRIPTION | 12 sapfluxnetr-0.0.7/sapfluxnetr/MD5 | 101 - sapfluxnetr-0.0.7/sapfluxnetr/NEWS.md | 10 sapfluxnetr-0.0.7/sapfluxnetr/R/helpers.R | 133 - sapfluxnetr-0.0.7/sapfluxnetr/R/metrics.R | 440 ++++-- sapfluxnetr-0.0.7/sapfluxnetr/R/sfn_data_classes.R | 2 sapfluxnetr-0.0.7/sapfluxnetr/R/sfn_data_methods.R | 60 sapfluxnetr-0.0.7/sapfluxnetr/R/sfn_dplyr.R | 8 sapfluxnetr-0.0.7/sapfluxnetr/README.md | 20 sapfluxnetr-0.0.7/sapfluxnetr/build/vignette.rds |binary sapfluxnetr-0.0.7/sapfluxnetr/inst/doc/custom-aggregation.R | 26 sapfluxnetr-0.0.7/sapfluxnetr/inst/doc/custom-aggregation.Rmd | 92 - sapfluxnetr-0.0.7/sapfluxnetr/inst/doc/custom-aggregation.html | 309 ++-- sapfluxnetr-0.0.7/sapfluxnetr/inst/doc/data-flags.Rmd | 2 sapfluxnetr-0.0.7/sapfluxnetr/inst/doc/data-flags.html | 11 sapfluxnetr-0.0.7/sapfluxnetr/inst/doc/memory-and-parallelization.R | 4 sapfluxnetr-0.0.7/sapfluxnetr/inst/doc/memory-and-parallelization.Rmd | 4 sapfluxnetr-0.0.7/sapfluxnetr/inst/doc/memory-and-parallelization.html | 13 sapfluxnetr-0.0.7/sapfluxnetr/inst/doc/metadata-and-data-units.Rmd | 2 sapfluxnetr-0.0.7/sapfluxnetr/inst/doc/metadata-and-data-units.html | 19 sapfluxnetr-0.0.7/sapfluxnetr/inst/doc/sapfluxnetr-quick-guide.R | 8 sapfluxnetr-0.0.7/sapfluxnetr/inst/doc/sapfluxnetr-quick-guide.Rmd | 34 sapfluxnetr-0.0.7/sapfluxnetr/inst/doc/sapfluxnetr-quick-guide.html | 338 ++-- sapfluxnetr-0.0.7/sapfluxnetr/inst/doc/sfn-data-classes.R | 4 sapfluxnetr-0.0.7/sapfluxnetr/inst/doc/sfn-data-classes.Rmd | 6 sapfluxnetr-0.0.7/sapfluxnetr/inst/doc/sfn-data-classes.html | 702 ++++------ sapfluxnetr-0.0.7/sapfluxnetr/man/diurnal_centroid.Rd | 6 sapfluxnetr-0.0.7/sapfluxnetr/man/dot-accumulated_posix_aware.Rd | 2 sapfluxnetr-0.0.7/sapfluxnetr/man/dot-assert_that_period_is_valid.Rd |only sapfluxnetr-0.0.7/sapfluxnetr/man/dot-collapse_timestamp.Rd |only sapfluxnetr-0.0.7/sapfluxnetr/man/dot-fixed_metrics_funs.Rd | 3 sapfluxnetr-0.0.7/sapfluxnetr/man/dot-nightly_daily_cf.Rd |only sapfluxnetr-0.0.7/sapfluxnetr/man/dot-parse_period.Rd |only sapfluxnetr-0.0.7/sapfluxnetr/man/dot-period_to_minutes.Rd | 23 sapfluxnetr-0.0.7/sapfluxnetr/man/figures/README-example_multi-1.png |binary sapfluxnetr-0.0.7/sapfluxnetr/man/figures/README-example_multi-2.png |binary sapfluxnetr-0.0.7/sapfluxnetr/man/figures/README-example_single-1.png |binary sapfluxnetr-0.0.7/sapfluxnetr/man/figures/README-example_single-2.png |binary sapfluxnetr-0.0.7/sapfluxnetr/man/metrics.Rd | 17 sapfluxnetr-0.0.7/sapfluxnetr/man/sfn_get_methods.Rd | 4 sapfluxnetr-0.0.7/sapfluxnetr/man/sfn_metrics.Rd | 64 sapfluxnetr-0.0.7/sapfluxnetr/man/sfn_multi_get_methods.Rd | 4 sapfluxnetr-0.0.7/sapfluxnetr/man/sfn_mutate_at.Rd | 8 sapfluxnetr-0.0.7/sapfluxnetr/man/summarise_by_period.Rd | 26 sapfluxnetr-0.0.7/sapfluxnetr/tests/testthat/test-helpers.R | 12 sapfluxnetr-0.0.7/sapfluxnetr/tests/testthat/test-metrics.R | 535 +++++-- sapfluxnetr-0.0.7/sapfluxnetr/tests/testthat/test-sfn_dplyr_methods.R | 8 sapfluxnetr-0.0.7/sapfluxnetr/vignettes/custom-aggregation.Rmd | 92 - sapfluxnetr-0.0.7/sapfluxnetr/vignettes/data-flags.Rmd | 2 sapfluxnetr-0.0.7/sapfluxnetr/vignettes/memory-and-parallelization.Rmd | 4 sapfluxnetr-0.0.7/sapfluxnetr/vignettes/metadata-and-data-units.Rmd | 2 sapfluxnetr-0.0.7/sapfluxnetr/vignettes/sapfluxnetr-quick-guide.Rmd | 34 sapfluxnetr-0.0.7/sapfluxnetr/vignettes/sfn-data-classes.Rmd | 6 54 files changed, 1761 insertions(+), 1451 deletions(-)
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