Title: Library of Research Designs
Description: A simple interface to build designs using the package 'DeclareDesign'.
In one line of code, users can specify the parameters of individual
designs and diagnose their properties. The designers can also be used
to compare performance of a given design across a range of combinations
of parameters, such as effect size, sample size, and assignment probabilities.
Author: Graeme Blair [aut],
Jasper Cooper [aut, cre],
Alexander Coppock [aut],
Macartan Humphreys [aut],
Clara Bicalho [aut],
Neal Fultz [aut],
Lily Medina [aut]
Maintainer: Jasper Cooper <jjc2247@columbia.edu>
Diff between DesignLibrary versions 0.1.2 dated 2018-11-12 and 0.1.3 dated 2019-05-02
DesignLibrary-0.1.2/DesignLibrary/man/clean_code.Rd |only DesignLibrary-0.1.3/DesignLibrary/DESCRIPTION | 12 DesignLibrary-0.1.3/DesignLibrary/MD5 | 83 ++--- DesignLibrary-0.1.3/DesignLibrary/NAMESPACE | 6 DesignLibrary-0.1.3/DesignLibrary/NEWS.md | 21 + DesignLibrary-0.1.3/DesignLibrary/R/DesignLibrary.R | 3 DesignLibrary-0.1.3/DesignLibrary/R/binary_iv_designer.R | 68 +++- DesignLibrary-0.1.3/DesignLibrary/R/block_cluster_two_arm_designer.R | 52 ++- DesignLibrary-0.1.3/DesignLibrary/R/cluster_sampling_designer.R | 31 +- DesignLibrary-0.1.3/DesignLibrary/R/factorial_designer.R | 63 ++-- DesignLibrary-0.1.3/DesignLibrary/R/helpers.R | 152 ++++++++-- DesignLibrary-0.1.3/DesignLibrary/R/mediation_analysis_designer.R | 45 ++ DesignLibrary-0.1.3/DesignLibrary/R/multi_arm_designer.R | 56 ++- DesignLibrary-0.1.3/DesignLibrary/R/pretest_posttest_designer.R | 36 +- DesignLibrary-0.1.3/DesignLibrary/R/process_tracing_designer.R | 63 +++- DesignLibrary-0.1.3/DesignLibrary/R/randomized_response_designer.R | 46 +-- DesignLibrary-0.1.3/DesignLibrary/R/regression_discontinuity_designer.R | 37 +- DesignLibrary-0.1.3/DesignLibrary/R/spillover_designer.R | 34 +- DesignLibrary-0.1.3/DesignLibrary/R/two_arm_attrition_designer.R | 52 ++- DesignLibrary-0.1.3/DesignLibrary/R/two_arm_covariate_designer.R |only DesignLibrary-0.1.3/DesignLibrary/R/two_arm_designer.R | 55 ++- DesignLibrary-0.1.3/DesignLibrary/R/two_by_two_designer.R | 48 ++- DesignLibrary-0.1.3/DesignLibrary/inst/extdata/overview.csv | 12 DesignLibrary-0.1.3/DesignLibrary/man/assignment_string.Rd |only DesignLibrary-0.1.3/DesignLibrary/man/binary_iv_designer.Rd | 11 DesignLibrary-0.1.3/DesignLibrary/man/block_cluster_two_arm_designer.Rd | 9 DesignLibrary-0.1.3/DesignLibrary/man/cluster_sampling_designer.Rd | 6 DesignLibrary-0.1.3/DesignLibrary/man/code_fixer.Rd |only DesignLibrary-0.1.3/DesignLibrary/man/construct_design_code.Rd | 6 DesignLibrary-0.1.3/DesignLibrary/man/factorial_designer.Rd | 4 DesignLibrary-0.1.3/DesignLibrary/man/mediation_analysis_designer.Rd | 4 DesignLibrary-0.1.3/DesignLibrary/man/multi_arm_designer.Rd | 6 DesignLibrary-0.1.3/DesignLibrary/man/pretest_posttest_designer.Rd | 4 DesignLibrary-0.1.3/DesignLibrary/man/process_tracing_designer.Rd | 15 DesignLibrary-0.1.3/DesignLibrary/man/randomized_response_designer.Rd | 6 DesignLibrary-0.1.3/DesignLibrary/man/regression_discontinuity_designer.Rd | 4 DesignLibrary-0.1.3/DesignLibrary/man/spillover_designer.Rd | 4 DesignLibrary-0.1.3/DesignLibrary/man/str_within.Rd |only DesignLibrary-0.1.3/DesignLibrary/man/sub_expr_text.Rd |only DesignLibrary-0.1.3/DesignLibrary/man/two_arm_attrition_designer.Rd | 4 DesignLibrary-0.1.3/DesignLibrary/man/two_arm_covariate_designer.Rd |only DesignLibrary-0.1.3/DesignLibrary/man/two_arm_designer.Rd | 6 DesignLibrary-0.1.3/DesignLibrary/man/two_by_two_designer.Rd | 4 DesignLibrary-0.1.3/DesignLibrary/tests/testthat/test_designers.R | 73 ++++ DesignLibrary-0.1.3/DesignLibrary/tests/testthat/test_helpers.R | 30 + DesignLibrary-0.1.3/DesignLibrary/tests/testthat/test_overview_table.R | 30 + 46 files changed, 856 insertions(+), 345 deletions(-)
Title: Hierarchical Ensemble Methods for Directed Acyclic Graphs
Description: An implementation of several Hierarchical Ensemble Methods (HEMs) for Directed Acyclic Graphs (DAGs). 'HEMDAG' package: 1) reconciles flat predictions with the topology of the ontology; 2) can enhance predictions of virtually any flat learning methods by taking into account the hierarchical relationships between ontology classes; 3) always provides biologically consistent predictions according to the hierarchical nature of the ontology classes; 4) is specifically designed for exploiting the hierarchical relationships of DAG-structured taxonomies, such as the Human Phenotype Ontology (HPO) or the Gene Ontology (GO), but can be safely applied to tree-structured taxonomies as well (e.g. FunCat), since trees are DAGs; 5) scales nicely both in terms of the complexity of the taxonomy and in the cardinality of the examples; 6) provides several utility functions to process and analyze graphs; 7) provides several performance metrics to evaluate HEMs algorithms. (Marco Notaro, Max Schubach, Peter N. Robinson and Giorgio Valentini (2017) <doi:10.1186/s12859-017-1854-y>).
Author: Marco Notaro [aut, cre] (<https://orcid.org/0000-0003-4309-2200>),
Alessandro Petrini [ctb] (<https://orcid.org/0000-0002-0587-1484>),
Giorgio Valentini [aut] (<https://orcid.org/0000-0002-5694-3919>)
Maintainer: Marco Notaro <marco.notaro@unimi.it>
Diff between HEMDAG versions 2.4.7 dated 2019-03-18 and 2.4.8 dated 2019-05-02
HEMDAG-2.4.7/HEMDAG/inst/HEMDAG_2.4.7.pdf |only HEMDAG-2.4.8/HEMDAG/DESCRIPTION | 10 +++++----- HEMDAG-2.4.8/HEMDAG/MD5 | 8 ++++---- HEMDAG-2.4.8/HEMDAG/NEWS.md | 8 +++++++- HEMDAG-2.4.8/HEMDAG/R/GPAV.R | 2 +- HEMDAG-2.4.8/HEMDAG/inst/HEMDAG_2.4.8.pdf |only 6 files changed, 17 insertions(+), 11 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-06-02 0.0.1
Title: Analysis and Mining of Multilayer Social Networks
Description: Functions for the creation/generation and analysis of multilayer social networks.
Author: Matteo Magnani, Davide Vega, Mikael Dubik (glouvain). The package uses functions from eclat (www.borgelt.net/eclat.html), for association rule mining, Eigen (eigen.tuxfamily.org) and spectra (https://spectralib.org), for matrix manipulation, Infomap (www.mapequation.org), for the Infomap community detection method, and Howard Hinnant's date and time library (https://github.com/HowardHinnant/date). The code from this libraries has been included in our source package.
Maintainer: Matteo Magnani <matteo.magnani@it.uu.se>
Diff between multinet versions 3.0.1 dated 2019-03-20 and 3.0.2 dated 2019-05-02
DESCRIPTION | 8 +++---- MD5 | 16 +++++++------- NEWS | 4 +++ man/Communities.Rd | 2 + src/r_functions.cpp | 15 +++++++++++++ src/r_functions.h | 14 ++++++++++-- src/rcpp_module_definition.cpp | 11 ++++++++++ src/rcpp_utils.cpp | 45 +++++++++++++++++++++++++++++++++++++++++ src/rcpp_utils.h | 5 ++++ 9 files changed, 106 insertions(+), 14 deletions(-)
Title: Cross-Platform File System Operations Based on 'libuv'
Description: A cross-platform interface to file system operations, built on
top of the 'libuv' C library.
Author: Jim Hester [aut, cre],
Hadley Wickham [aut],
libuv project contributors [cph] (libuv library),
Joyent, Inc. and other Node contributors [cph] (libuv library),
RStudio [cph, fnd]
Maintainer: Jim Hester <james.f.hester@gmail.com>
Diff between fs versions 1.2.7 dated 2019-03-19 and 1.3.0 dated 2019-05-02
DESCRIPTION | 9 ++- MD5 | 81 +++++++++++++++++----------------- NEWS.md | 34 +++++++++++++- R/access.R | 3 + R/copy.R | 18 ++++--- R/create.R | 12 +++-- R/delete.R | 4 - R/file.R | 4 + R/fs_path.R | 4 - R/fs_perms.R | 3 + R/list.R | 43 ++++++++++++------ R/path.R | 7 ++ R/path_package.R | 24 +++++++--- R/tree.R | 7 ++ README.md | 88 +++++++++++++++++++------------------ build/vignette.rds |binary inst/WORDLIST | 30 +++++++++++- inst/doc/function-comparisons.Rmd | 2 inst/doc/function-comparisons.html | 4 - man/copy.Rd | 7 ++ man/create.Rd | 6 +- man/dir_ls.Rd | 22 +++++---- man/dir_tree.Rd | 7 ++ man/file_access.Rd | 5 ++ man/file_chmod.Rd | 6 ++ man/fs_perms.Rd | 3 + man/path_file.Rd | 4 + man/path_package.Rd | 6 ++ src/RcppExports.cpp | 4 - src/dir.cc | 29 +++++++----- tests/spelling.R |only tests/testthat/ref-tree-1 | 2 tests/testthat/ref-tree-2 | 8 +-- tests/testthat/ref-tree-3 | 14 ++--- tests/testthat/test-copy.R | 8 +++ tests/testthat/test-create.R | 12 ++++- tests/testthat/test-link.R | 2 tests/testthat/test-list.R | 43 +++++++++--------- tests/testthat/test-path.R | 29 ++++++++++-- tests/testthat/test-sanitize.R | 3 - tests/testthat/test-tree.R | 6 +- vignettes/function-comparisons.Rmd | 2 42 files changed, 403 insertions(+), 202 deletions(-)
Title: Smart Adaptive Recommendations
Description: 'Smart Adaptive Recommendations' (SAR) is the name of a fast, scalable, adaptive algorithm for personalized recommendations based on user transactions and item descriptions. It produces easily explainable/interpretable recommendations and handles "cold item" and "semi-cold user" scenarios. This package provides two implementations of 'SAR': a standalone implementation, and an interface to a web service in Microsoft's 'Azure' cloud: <https://github.com/Microsoft/Product-Recommendations/blob/master/doc/sar.md>. The former allows fast and easy experimentation, and the latter provides robust scalability and extra features for production use.
Author: Hong Ooi [aut, cre],
Microsoft Product Recommendations team [ctb] (source for MS sample
datasets),
Microsoft [cph]
Maintainer: Hong Ooi <hongooi@microsoft.com>
Diff between SAR versions 1.0.0 dated 2019-02-01 and 1.0.1 dated 2019-05-02
DESCRIPTION | 8 ++++---- MD5 | 11 ++++++----- NEWS.md |only R/onload.R | 19 +++++-------------- R/sar.R | 2 +- R/sar_pkg.R | 2 +- README.md | 6 ++++++ 7 files changed, 23 insertions(+), 25 deletions(-)
Title: Multidimensional Penalized Splines for Survival and Net Survival
Models
Description: Fits hazard and excess hazard models with multidimensional penalized splines allowing for time-dependent effects, non-linear effects and interactions between several continuous covariates.
Author: Mathieu Fauvernier [aut, cre], Laurent Roche [aut], Laurent Remontet [aut], Zoe Uhry [ctb], Nadine Bossard [ctb]
Maintainer: Mathieu Fauvernier <mathieu.fauvernier@gmail.com>
Diff between survPen versions 1.0.1 dated 2019-03-01 and 1.1.0 dated 2019-05-02
survPen-1.0.1/survPen/R/survPenV1_01.r |only survPen-1.1.0/survPen/DESCRIPTION | 10 survPen-1.1.0/survPen/MD5 | 65 +++-- survPen-1.1.0/survPen/NEWS | 11 survPen-1.1.0/survPen/R/survPenV1_10.r |only survPen-1.1.0/survPen/build |only survPen-1.1.0/survPen/inst |only survPen-1.1.0/survPen/man/NR.beta.Rd | 2 survPen-1.1.0/survPen/man/NR.rho.Rd | 2 survPen-1.1.0/survPen/man/constraint.Rd | 2 survPen-1.1.0/survPen/man/cor.var.Rd | 2 survPen-1.1.0/survPen/man/crs.FP.Rd | 2 survPen-1.1.0/survPen/man/crs.Rd | 2 survPen-1.1.0/survPen/man/datCancer.Rd | 2 survPen-1.1.0/survPen/man/design.matrix.Rd | 2 survPen-1.1.0/survPen/man/instr.Rd | 2 survPen-1.1.0/survPen/man/inv.repam.Rd | 2 survPen-1.1.0/survPen/man/model.cons.Rd | 2 survPen-1.1.0/survPen/man/predict.survPen.Rd | 2 survPen-1.1.0/survPen/man/print.summary.survPen.Rd | 2 survPen-1.1.0/survPen/man/rd.Rd | 2 survPen-1.1.0/survPen/man/repam.Rd | 2 survPen-1.1.0/survPen/man/smf.Rd | 10 survPen-1.1.0/survPen/man/smooth.cons.Rd | 6 survPen-1.1.0/survPen/man/smooth.cons.integral.Rd | 2 survPen-1.1.0/survPen/man/smooth.spec.Rd | 8 survPen-1.1.0/survPen/man/summary.survPen.Rd | 3 survPen-1.1.0/survPen/man/survPen.Rd | 242 ++------------------- survPen-1.1.0/survPen/man/survPen.fit.Rd | 2 survPen-1.1.0/survPen/man/survPenObject.Rd | 3 survPen-1.1.0/survPen/man/tensor.in.Rd | 2 survPen-1.1.0/survPen/man/tensor.prod.S.Rd | 2 survPen-1.1.0/survPen/man/tensor.prod.X.Rd | 2 survPen-1.1.0/survPen/tests/test_survPen.r | 12 - survPen-1.1.0/survPen/vignettes |only 35 files changed, 109 insertions(+), 301 deletions(-)
Title: Cross-Validated (Nested) Forward Selection
Description: Implementation of forward selection based on cross-validated
linear and logistic regression.
Author: Marco Colombo [aut, cre] (<https://orcid.org/0000-0001-6672-0623>),
Felix Agakov [ctb]
Maintainer: Marco Colombo <mar.colombo13@gmail.com>
Diff between nestfs versions 0.9.1 dated 2018-12-16 and 0.9.2 dated 2019-05-02
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 10 ++++++++++ R/summary.R | 3 ++- README.md | 44 +++++++++++++++++++++++++++++++++++++++++++- 5 files changed, 64 insertions(+), 11 deletions(-)
Title: Sino Xmen Said
Description: Displays a pseudorandom message from a database of quotations. It works as an advanced version of the package 'fortunes', while 'sinx' supports multi-byte languages such as Chinese. The databases of 'sinx' can be given in markdown format, which is easier and more friendly than spread sheets for users.
Author: Peng Zhao [aut, cre]
Maintainer: Peng Zhao <pzhao@pzhao.net>
Diff between sinx versions 0.0.5 dated 2019-03-22 and 0.0.11 dated 2019-05-02
DESCRIPTION | 12 MD5 | 34 +- NAMESPACE | 12 R/cscx.R | 33 +- R/secx.R |only R/sinx.R | 167 +++++++++++- R/tanx.R |only build |only inst/doc |only inst/sinxs/chinese.csv |only inst/sinxs/cosxs.csv |only inst/sinxs/english.csv |only inst/sinxs/jinyong.csv |only inst/sinxs/sinxs.md | 62 ++++ inst/sinxs/songshi.csv |only inst/sinxs/tangshi.csv | 630 +++++++++++++++++++++++------------------------ inst/sinxs/yangsheng.csv |only man/cscx.Rd | 4 man/ctanx.Rd |only man/read.sinxs.Rd | 19 + man/secx.Rd |only man/sinx.Rd | 15 - man/tanx.Rd |only vignettes |only 24 files changed, 630 insertions(+), 358 deletions(-)
Title: Perform and Display Google Trends Queries
Description: An interface for retrieving and displaying the information returned
online by Google Trends is provided. Trends (number of hits) over the time as
well as geographic representation of the results can be displayed.
Author: Philippe Massicotte [aut, cre],
Dirk Eddelbuettel [aut]
Maintainer: Philippe Massicotte <pmassicotte@hotmail.com>
Diff between gtrendsR versions 1.4.2 dated 2018-08-04 and 1.4.3 dated 2019-05-02
DESCRIPTION | 10 - MD5 | 26 +-- NAMESPACE | 22 +-- NEWS.md | 18 ++ R/gtrends.R | 63 ++++++--- R/related_queries.R | 15 +- R/related_topics.R | 16 +- R/zzz.R | 306 +++++++++++++++++++++++++++++++-------------- README.md | 2 man/categories.Rd | 34 ++--- man/countries.Rd | 42 +++--- man/gtrends.Rd | 240 ++++++++++++++++++----------------- man/plot.gtrends.Rd | 52 +++---- man/setHandleParameters.Rd | 88 ++++++------ 14 files changed, 551 insertions(+), 383 deletions(-)
Title: Back-Calculation of Fish Length
Description: Helps fisheries scientists collect measurements from calcified
structures and back-calculate estimated lengths at previous ages using
standard procedures and models. This is intended to replace much of the
functionality provided by the now out-dated 'fishBC' software
(<https://fisheries.org/bookstore/all-titles/software/70317/>).
Author: Derek Ogle [aut, cre] (<https://orcid.org/0000-0002-0370-9299>)
Maintainer: Derek Ogle <derek@derekogle.com>
Diff between RFishBC versions 0.2.0 dated 2018-12-18 and 0.2.2 dated 2019-05-02
DESCRIPTION | 11 - MD5 | 48 ++--- NAMESPACE | 2 NEWS.md | 15 + R/RFBCoptions.R | 17 + R/RFishBC-internals.R | 34 ++- R/addFindNotes.R |only R/backCalc.R | 4 R/combineData.R | 15 + R/digitizeRadii.R | 126 +++++++++----- R/showDigitizedImage.R | 306 +++++++++++++++++++++++++--------- man/RFBCoptions.Rd | 4 man/addNote.Rd |only man/digitizeRadii.Rd | 15 + man/findNotes.Rd |only man/showDigitizedImage.Rd | 11 + tests/testthat/DWS_Oto_89765_DHO.rds |binary tests/testthat/Oto140306_DHO.rds |binary tests/testthat/Oto140306_OHD.rds |binary tests/testthat/Scale_1_DHO.rds |binary tests/testthat/Scale_1_ODH.rds |binary tests/testthat/Scale_1_OHD.rds |binary tests/testthat/Scale_2_DHO.rds |binary tests/testthat/Scale_2_OLDwNoNote.rds |only tests/testthat/Scale_3_DHO.rds |binary tests/testthat/test_MESSAGES.R | 98 +++++++++- tests/testthat/test_OUTPUTS.R | 95 ++++++++++ 27 files changed, 608 insertions(+), 193 deletions(-)
Title: Predicting Economic Variables using Dynamic Factor Models
Description: It contains the tools to implement dynamic factor models to forecast economic variables. The user will be able to construct pseudo real time vintages, use information criteria for determining the number of factors and shocks, estimate the model, and visualize results among other things.
Author: Daiane Marcolino de Mattos [aut, cre],
Pedro Costa Ferreira [aut],
Serge de Valk [aut],
Guilherme Branco Gomes [aut]
Maintainer: Daiane Marcolino de Mattos <daiane.mattos@fgv.br>
Diff between nowcasting versions 1.1.0 dated 2019-04-24 and 1.1.1 dated 2019-05-02
DESCRIPTION | 8 MD5 | 44 - NAMESPACE | 100 +- R/Bpanel.R | 296 +++---- R/NYFED.R | 30 R/method_2s.R | 1242 ++++++++++++++++----------------- R/method_EM.r | 1840 ++++++++++++++++++++++++------------------------- R/nowcast.R | 484 ++++++------ man/BRGDP.Rd | 44 - man/Bpanel.Rd | 132 +-- man/ICfactors.Rd | 54 - man/ICshocks.Rd | 62 - man/NYFED.Rd | 46 - man/PRTDB.Rd | 50 - man/RTDB.Rd | 62 - man/USGDP.Rd | 50 - man/USGDPshort.Rd | 50 - man/base_extraction.Rd | 84 +- man/month2qtr.Rd | 56 - man/nowcast.Rd | 168 ++-- man/nowcast.plot.Rd | 82 +- man/nowcasting.Rd | 68 - man/qtr2month.Rd | 52 - 23 files changed, 2553 insertions(+), 2551 deletions(-)
Title: Common Functionality for the 'dynverse' Packages
Description: Provides common functionality for the 'dynverse' packages.
'dynverse' is created to support the development, execution, and benchmarking of trajectory inference methods.
For more information, check out <dynverse.org>.
Author: Robrecht Cannoodt [aut, cre] (<https://orcid.org/0000-0003-3641-729X>,
rcannood),
Wouter Saelens [aut] (<https://orcid.org/0000-0002-7114-6248>, zouter)
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>
Diff between dynutils versions 1.0.2 dated 2019-03-21 and 1.0.3 dated 2019-05-02
dynutils-1.0.2/dynutils/R/pritt.R |only dynutils-1.0.2/dynutils/man/pritt.Rd |only dynutils-1.0.2/dynutils/src/calculate_distance.cpp |only dynutils-1.0.2/dynutils/tests/testthat/test-pritt.R |only dynutils-1.0.3/dynutils/DESCRIPTION | 18 dynutils-1.0.3/dynutils/MD5 | 83 +- dynutils-1.0.3/dynutils/NAMESPACE | 49 + dynutils-1.0.3/dynutils/R/RcppExports.R | 12 dynutils-1.0.3/dynutils/R/calculate_distance.R | 190 ++++-- dynutils-1.0.3/dynutils/R/development.R |only dynutils-1.0.3/dynutils/R/extend_with.R | 16 dynutils-1.0.3/dynutils/R/h5.R | 140 ++++- dynutils-1.0.3/dynutils/R/inherit_default_params.R | 6 dynutils-1.0.3/dynutils/R/install_packages.R | 45 - dynutils-1.0.3/dynutils/R/mapdf.R | 14 dynutils-1.0.3/dynutils/R/news.R | 18 dynutils-1.0.3/dynutils/R/package.R | 82 +- dynutils-1.0.3/dynutils/R/scaling.R | 8 dynutils-1.0.3/dynutils/R/sparse_matrix.R |only dynutils-1.0.3/dynutils/R/spearman_rank_sparse.R |only dynutils-1.0.3/dynutils/R/tibble.R | 4 dynutils-1.0.3/dynutils/README.md | 37 - dynutils-1.0.3/dynutils/build/vignette.rds |binary dynutils-1.0.3/dynutils/inst/NEWS | 14 dynutils-1.0.3/dynutils/inst/NEWS.md | 14 dynutils-1.0.3/dynutils/inst/doc/functionality.R | 9 dynutils-1.0.3/dynutils/inst/doc/functionality.Rmd | 11 dynutils-1.0.3/dynutils/inst/doc/functionality.html | 277 ++++------ dynutils-1.0.3/dynutils/man/calculate_distance.Rd | 48 - dynutils-1.0.3/dynutils/man/calculate_mean.Rd | 12 dynutils-1.0.3/dynutils/man/deprecated.Rd |only dynutils-1.0.3/dynutils/man/dynutils.Rd | 50 - dynutils-1.0.3/dynutils/man/figures |only dynutils-1.0.3/dynutils/man/inherit_default_params.Rd | 2 dynutils-1.0.3/dynutils/man/install_packages.Rd | 12 dynutils-1.0.3/dynutils/man/is_sparse.Rd | 12 dynutils-1.0.3/dynutils/man/mapdf.Rd | 18 dynutils-1.0.3/dynutils/man/project_to_segments.Rd | 8 dynutils-1.0.3/dynutils/man/switch_devel.Rd |only dynutils-1.0.3/dynutils/man/test_h5_installation.Rd |only dynutils-1.0.3/dynutils/src/RcppExports.cpp | 40 - dynutils-1.0.3/dynutils/src/spearman_rank_sparse.cpp |only dynutils-1.0.3/dynutils/tests/testthat.R | 6 dynutils-1.0.3/dynutils/tests/testthat/test-calculate_distance.R | 115 ++-- dynutils-1.0.3/dynutils/tests/testthat/test-h5.R | 37 - dynutils-1.0.3/dynutils/tests/testthat/test-install_packages.R | 13 dynutils-1.0.3/dynutils/tests/testthat/test-mapdf.R | 10 dynutils-1.0.3/dynutils/tests/testthat/test-spearman_rank_sparse.R |only dynutils-1.0.3/dynutils/vignettes/functionality.Rmd | 11 49 files changed, 775 insertions(+), 666 deletions(-)
Title: Downloading YouTube Subtitle Transcription in a Tidy 'Tibble'
Data_Frame
Description: Although there exist some R packages tailored for YouTube API (e.g., 'tuber'), downloading YouTube video subtitle (i.e., caption) in a tidy form has never been a low-hanging fruit. Using 'youtube-transcript-api Python package' under the hood, this R package provides users with a convenient way of parsing and converting a desired YouTube caption into a handy 'tibble' data_frame object. Furthermore, users can easily save a desired YouTube caption data as a tidy Excel file without advanced programming background knowledge.
Author: JooYoung Seo [aut, cre] (<https://orcid.org/0000-0002-4064-6012>),
Soyoung Choi [aut] (<https://orcid.org/0000-0002-0998-3352>)
Maintainer: JooYoung Seo <jooyoung@psu.edu>
Diff between youtubecaption versions 0.1.0 dated 2019-05-01 and 0.1.1 dated 2019-05-02
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS.md | 5 +++++ R/get_caption.R | 2 +- README.md | 6 ++++++ inst/NEWS | 5 +++++ inst/doc/youtubecaption_vignette.Rmd | 3 +++ inst/doc/youtubecaption_vignette.html | 6 +++--- man/get_caption.Rd | 3 ++- vignettes/youtubecaption_vignette.Rmd | 3 +++ 10 files changed, 40 insertions(+), 17 deletions(-)
More information about youtubecaption at CRAN
Permanent link
Title: Tools for Analyzing Factorial Experiments
Description: Offers a helping hand to psychologists and other behavioral scientists who routinely deal with experimental data from factorial experiments. It includes several functions to format output from other R functions according to the style guidelines of the APA (American Psychological Association). This formatted output can be copied directly into manuscripts to facilitate data reporting. These features are backed up by a toolkit of several small helper functions, e.g., offering out-of-the-box outlier removal. The package lends its name to Georg "Schorsch" Schuessler, ingenious technician at the Department of Psychology III, University of Wuerzburg. For details on the implemented methods, see Roland Pfister and Markus Janczyk (2016) <doi: 10.20982/tqmp.12.2.p147>.
Author: Roland Pfister, Markus Janczyk
Maintainer: Roland Pfister <roland.pfister@psychologie.uni-wuerzburg.de>
Diff between schoRsch versions 1.5 dated 2018-12-15 and 1.6 dated 2019-05-02
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/cor_out.R | 4 ++-- man/schoRsch.Rd | 7 ++++--- 4 files changed, 13 insertions(+), 12 deletions(-)
Title: Create Reproducible Research Projects
Description: Creates reproducible academic projects with integrated academic elements, including datasets, references, codes, images, manuscripts, dissertations, slides and so on. These elements are well connected so that they can be easily synchronized and updated.
Author: Peng Zhao [aut, cre]
Maintainer: Peng Zhao <pzhao@pzhao.net>
Diff between rosr versions 0.0.6 dated 2019-03-23 and 0.0.7 dated 2019-05-02
DESCRIPTION | 10 MD5 | 61 + NAMESPACE | 9 R/eq.R | 12 R/rmd.R |only inst/rmarkdown/templates/article_svm |only inst/rmarkdown/templates/beamer/skeleton/skeleton.Rmd | 46 + inst/rmarkdown/templates/cv_svm |only inst/rmarkdown/templates/letter_moderncv |only inst/rmarkdown/templates/manuscript_svm |only inst/rmarkdown/templates/powerpoint/skeleton/skeleton.Rmd | 43 - inst/rmarkdown/templates/statement_svm |only inst/rmarkdown/templates/syllabus_svm |only inst/skeleton/book/bookdownplus/demo/body.Rmd | 6 inst/skeleton/book/bookdownplus/demo/index.Rmd | 70 +- inst/skeleton/equation/rosr-eq.Rmd | 2 inst/skeleton/manuscript/rticles/copernicus_article/copernicus_article.Rmd | 314 +++++----- inst/skeleton/poster/drposter/drposter/drposter.Rmd | 25 inst/skeleton/slide/xaringan/xaringan/xaringan.Rmd | 34 - man/fig.Rd |only man/rmd_template.Rd |only man/rosr-imports.Rd |only 22 files changed, 371 insertions(+), 261 deletions(-)
Title: 'Entrez' in R
Description: Provides an R interface to the NCBI's 'EUtils' API,
allowing users to search databases like 'GenBank'
<https://www.ncbi.nlm.nih.gov/genbank/> and 'PubMed'
<https://www.ncbi.nlm.nih.gov/pubmed/>, process the
results of those searches and pull data into their R sessions.
Author: David Winter [aut, cre] (<https://orcid.org/0000-0002-6165-0029>),
Scott Chamberlain [ctb] (<https://orcid.org/0000-0003-1444-9135>),
Han Guangchun [ctb] (<https://orcid.org/0000-0001-9277-2507>)
Maintainer: David Winter <david.winter@gmail.com>
Diff between rentrez versions 1.2.1 dated 2018-03-05 and 1.2.2 dated 2019-05-02
DESCRIPTION | 8 - MD5 | 20 +-- NEWS | 11 ++ R/base.r | 17 +++ R/entrez_summary.r | 4 R/parse_pubmed_xml.r | 4 build/vignette.rds |binary inst/doc/rentrez_tutorial.html | 213 +++++++++++++++++++++-------------------- man/extract_from_esummary.Rd | 6 - tests/testthat/test_net.r | 3 tests/testthat/test_parse.r | 10 + 11 files changed, 174 insertions(+), 122 deletions(-)
Title: Convert Chinese Characters into Pinyin, Sijiao, Wubi or Other
Codes
Description: Convert Chinese characters into Pinyin (the official romanization system for Standard Chinese in mainland China, Malaysia, Singapore, and Taiwan. See <https://en.wikipedia.org/wiki/Pinyin> for details), Sijiao (four or five numerical digits per character. See <https://en.wikipedia.org/wiki/Four-Corner_Method>.), Wubi (an input method with five strokes. See <https://en.wikipedia.org/wiki/Wubi_method>) or user-defined codes.
Author: Peng Zhao [aut, cre],
Qu Cheng [ctb]
Maintainer: Peng Zhao <pzhao@pzhao.net>
Diff between pinyin versions 1.1.5 dated 2018-12-17 and 1.1.6 dated 2019-05-02
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/py.R | 6 +++--- 3 files changed, 9 insertions(+), 9 deletions(-)
Title: Ornstein-Uhlenbeck Models for Phylogenetic Comparative
Hypotheses
Description: Fit and compare Ornstein-Uhlenbeck models for evolution along a phylogenetic tree.
Author: Aaron A. King <kingaa@umich.edu> and Marguerite A. Butler <mbutler@hawaii.edu>
Maintainer: Aaron A. King <kingaa@umich.edu>
Diff between ouch versions 2.11-1 dated 2017-07-18 and 2.14-1 dated 2019-05-02
ouch-2.11-1/ouch/inst/ChangeLog |only ouch-2.11-1/ouch/inst/OCHANGELOG |only ouch-2.14-1/ouch/DESCRIPTION | 14 ouch-2.14-1/ouch/MD5 | 20 ouch-2.14-1/ouch/inst/GPL | 780 ++++++++++++++++++++++++----- ouch-2.14-1/ouch/inst/NEWS | 30 - ouch-2.14-1/ouch/inst/NEWS.Rd | 35 - ouch-2.14-1/ouch/man/hansen.Rd | 2 ouch-2.14-1/ouch/tests/boot.Rout.save | 10 ouch-2.14-1/ouch/tests/exacttree.Rout.save | 9 ouch-2.14-1/ouch/tests/simtree.R | 11 ouch-2.14-1/ouch/tests/simtree.Rout.save | 81 +-- 12 files changed, 793 insertions(+), 199 deletions(-)
Title: Convert Files Between Markdown or Rmarkdown Files and Mindmaps
Description: Convert Markdown ('.md') or Rmarkdown ('.Rmd') files into mindmap widgets or files ('.mm'), and vice versa. FreeMind mindmap ('.mm') files can be opened by or imported to common mindmap software such as 'FreeMind' (<http://freemind.sourceforge.net/wiki/index.php/Main_Page>) and 'XMind' (<http://www.xmind.net>).
Author: Peng Zhao
Maintainer: Peng Zhao <pzhao@pzhao.net>
Diff between mindr versions 1.2.1 dated 2019-02-28 and 1.2.2 dated 2019-05-02
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/internal.R | 31 +++++++++++++++++-------------- 3 files changed, 23 insertions(+), 20 deletions(-)
Title: Native R Kernel for the 'Jupyter Notebook'
Description: The R kernel for the 'Jupyter' environment executes R code which the front-end
('Jupyter Notebook' or other front-ends) submits to the kernel via the network.
Author: Thomas Kluyver [aut, cph],
Philipp Angerer [aut, cph, cre]
(<https://orcid.org/0000-0002-0369-2888>),
Jan Schulz [aut, cph],
Karthik Ram [aut, cph]
Maintainer: Philipp Angerer <phil.angerer@gmail.com>
Diff between IRkernel versions 1.0.0 dated 2019-04-30 and 1.0.1 dated 2019-05-02
DESCRIPTION | 6 - MD5 | 19 +++-- R/completion.r | 33 +++++++--- tests/testthat/__pycache__/test_ir.cpython-35.pyc |only tests/testthat/__pycache__/test_ir.cpython-36.pyc |only tests/testthat/__pycache__/test_ir.cpython-37.pyc |binary tests/testthat/jkt/jupyter_kernel_test/__pycache__/__init__.cpython-36.pyc |only tests/testthat/jkt/jupyter_kernel_test/__pycache__/__init__.cpython-37.pyc |binary tests/testthat/jkt/jupyter_kernel_test/__pycache__/messagespec.cpython-36.pyc |only tests/testthat/jkt/jupyter_kernel_test/__pycache__/messagespec.cpython-37.pyc |binary tests/testthat/jkt/jupyter_kernel_test/__pycache__/messagespec_common.cpython-36.pyc |only tests/testthat/jkt/jupyter_kernel_test/__pycache__/messagespec_common.cpython-37.pyc |binary tests/testthat/test_ir.py | 14 ++-- 13 files changed, 47 insertions(+), 25 deletions(-)
Title: GeoServer REST API R Interface
Description: Provides an R interface to the GeoServer REST API, allowing to upload
and publish data in a GeoServer web-application and expose data to OGC Web-Services.
The package currently supports all CRUD (Create,Read,Update,Delete) operations
on GeoServer workspaces, namespaces, datastores (stores of vector data), featuretypes,
layers, styles, as well as vector data upload operations. For more information about
the GeoServer REST API, see <http://docs.geoserver.org/stable/en/user/rest/>.
Author: Emmanuel Blondel [aut, cre] (<https://orcid.org/0000-0002-5870-5762>)
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between geosapi versions 0.3-0 dated 2018-09-12 and 0.4-0 dated 2019-05-02
DESCRIPTION | 10 +- MD5 | 36 ++++++---- NAMESPACE | 3 R/GSDataStore.R | 4 - R/GSDatastoreManager.R | 6 + R/GSRESTResource.R | 2 R/GSServiceManager.R |only R/GSServiceSettings.R |only R/GSWorkspaceManager.R | 104 +++++++++++++++++++++++++++++- R/GSWorkspaceSettings.R |only R/geosapi.R | 4 - README.md | 17 ++++ man/GSDataStoreManager.Rd | 2 man/GSDimension.Rd | 1 man/GSLayer.Rd | 2 man/GSServiceManager.Rd |only man/GSServiceSettings.Rd |only man/GSWorkspaceManager.Rd | 12 +++ man/GSWorkspaceSettings.Rd |only man/geosapi.Rd | 5 - tests/testthat/test_GSDataStore.R | 53 ++++++++++++--- tests/testthat/test_GSServiceSettings.R |only tests/testthat/test_GSWorkspaceSettings.R |only 23 files changed, 217 insertions(+), 44 deletions(-)
Title: Simple Fisheries Stock Assessment Methods
Description: A variety of simple fish stock assessment methods.
Detailed vignettes are available on the fishR website <http://derekogle.com/fishR/>.
Author: Derek Ogle [aut, cre] (<https://orcid.org/0000-0002-0370-9299>),
Powell Wheeler [aut] (Added method='Burnham' to removal()),
Alexis Dinno [aut] (Provided base functionality of dunnTest())
Maintainer: Derek Ogle <derek@derekogle.com>
Diff between FSA versions 0.8.22 dated 2018-11-22 and 0.8.23 dated 2019-05-02
FSA-0.8.22/FSA/tests/testthat/EXS_AgeLengthKey.R |only FSA-0.8.22/FSA/tests/testthat/EXS_CatchCurve.R |only FSA-0.8.22/FSA/tests/testthat/EXS_PSD.R |only FSA-0.8.22/FSA/tests/testthat/EXS_Summarize.R |only FSA-0.8.22/FSA/tests/testthat/EXS_addZeroCatch.R |only FSA-0.8.22/FSA/tests/testthat/EXS_bootstrap.R |only FSA-0.8.22/FSA/tests/testthat/EXS_capHist.R |only FSA-0.8.22/FSA/tests/testthat/EXS_comparisonsDVR.R |only FSA-0.8.22/FSA/tests/testthat/EXS_dunnTest.R |only FSA-0.8.22/FSA/tests/testthat/EXS_extraTests.R |only FSA-0.8.22/FSA/tests/testthat/EXS_fitResidPlots.R |only FSA-0.8.22/FSA/tests/testthat/EXS_growthFuns.R |only FSA-0.8.22/FSA/tests/testthat/EXS_lencat.R |only FSA-0.8.22/FSA/tests/testthat/EXS_mrOpen.R |only FSA-0.8.22/FSA/tests/testthat/EXS_sumTable.R |only FSA-0.8.22/FSA/tests/testthat/test_AgeComparisons_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_AgeComparisons_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_AgeComparisons_VALIDATE.R |only FSA-0.8.22/FSA/tests/testthat/test_AgeLengthKey_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_AgeLengthKey_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_AgeLengthKey_VALIDATE.R |only FSA-0.8.22/FSA/tests/testthat/test_CatchCurve_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_CatchCurve_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_CatchCurve_VALIDATE.R |only FSA-0.8.22/FSA/tests/testthat/test_FSAUtils_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_FSAUtils_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_Internals.R |only FSA-0.8.22/FSA/tests/testthat/test_LWCompPreds_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_LWCompPreds_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_PSD_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_PSD_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_PSD_VALIDATE.R |only FSA-0.8.22/FSA/tests/testthat/test_StockRecruit_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_StockRecruit_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_Summarize_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_Summarize_OUT_VALIDATE.R |only FSA-0.8.22/FSA/tests/testthat/test_VonBertalanffy_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_VonBertalanffy_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_VonBertalanffy_VALIDATE.R |only FSA-0.8.22/FSA/tests/testthat/test_WSWR_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_WSWR_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_WSWR_VALIDATE.R |only FSA-0.8.22/FSA/tests/testthat/test_addZeroCatch_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_addZeroCatch_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_addZeroCatch_VALIDATE.R |only FSA-0.8.22/FSA/tests/testthat/test_bootstrap_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_bootstrap_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_capHist_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_capHist_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_capHist_VALIDATE.R |only FSA-0.8.22/FSA/tests/testthat/test_ciDists_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_ciDists_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_ciDists_VALIDATE.R |only FSA-0.8.22/FSA/tests/testthat/test_comparisonsDVR_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_comparisonsDVR_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_depletion_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_depletion_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_depletion_VALIDATE.R |only FSA-0.8.22/FSA/tests/testthat/test_dunnTest_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_dunnTest_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_dunnTest_VALIDATE.R |only FSA-0.8.22/FSA/tests/testthat/test_expandCounts_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_expandCounts_OUT_VALIDATE.R |only FSA-0.8.22/FSA/tests/testthat/test_expandLenFreq_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_expandLenFreq_OUT_VALIDATE.R |only FSA-0.8.22/FSA/tests/testthat/test_extraTests_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_extraTests_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_extraTests_VALIDATE.R |only FSA-0.8.22/FSA/tests/testthat/test_fitResidPlots_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_fitResidPlots_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_growthFuns_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_growthFuns_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_histFormula_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_histFormula_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_histFromSum_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_knitUtil_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_ksTest_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_ksTest_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_ksTest_VALIDATE.R |only FSA-0.8.22/FSA/tests/testthat/test_lencat_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_lencat_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_lencat_VALIDATE.R |only FSA-0.8.22/FSA/tests/testthat/test_metaM_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_metaM_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_metaM_VALIDATE.R |only FSA-0.8.22/FSA/tests/testthat/test_mrClosed_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_mrClosed_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_mrClosed_VALIDATE.R |only FSA-0.8.22/FSA/tests/testthat/test_mrOpen_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_mrOpen_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_mrOpen_VALIDATE.R |only FSA-0.8.22/FSA/tests/testthat/test_nlsTracePlot_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_nlsTracePlot_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_removal_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_removal_OUT.R |only FSA-0.8.22/FSA/tests/testthat/test_removal_VALIDATE.R |only FSA-0.8.22/FSA/tests/testthat/test_sumTable_MSG.R |only FSA-0.8.22/FSA/tests/testthat/test_sumTable_OUT_VALIDATE.R |only FSA-0.8.23/FSA/DESCRIPTION | 8 FSA-0.8.23/FSA/MD5 | 166 +++------- FSA-0.8.23/FSA/NAMESPACE | 1 FSA-0.8.23/FSA/NEWS.md | 9 FSA-0.8.23/FSA/R/FSA-internals.R | 3 FSA-0.8.23/FSA/R/ageComparisons.R | 2 FSA-0.8.23/FSA/R/fitPlot.R | 52 +-- FSA-0.8.23/FSA/R/growthModels.R | 59 +++ FSA-0.8.23/FSA/R/hist.formula.R | 2 FSA-0.8.23/FSA/R/nlsTracePlot.R | 3 FSA-0.8.23/FSA/R/psdPlot.R | 10 FSA-0.8.23/FSA/R/wrAdd.R | 2 FSA-0.8.23/FSA/man/Schnute.Rd | 4 FSA-0.8.23/FSA/man/SchnuteRichards.Rd |only FSA-0.8.23/FSA/man/fitPlot.Rd | 7 FSA-0.8.23/FSA/man/growthModels.Rd | 4 FSA-0.8.23/FSA/man/psdPlot.Rd | 8 FSA-0.8.23/FSA/man/wrAdd.Rd | 2 FSA-0.8.23/FSA/tests/testthat/Rplots.pdf |binary FSA-0.8.23/FSA/tests/testthat/testthat_AgeComparisons.R |only FSA-0.8.23/FSA/tests/testthat/testthat_AgeLengthKey.R |only FSA-0.8.23/FSA/tests/testthat/testthat_FSAUtils.R |only FSA-0.8.23/FSA/tests/testthat/testthat_Internals.R |only FSA-0.8.23/FSA/tests/testthat/testthat_LWCompPreds.R |only FSA-0.8.23/FSA/tests/testthat/testthat_PSD.R |only FSA-0.8.23/FSA/tests/testthat/testthat_StockRecruit.R |only FSA-0.8.23/FSA/tests/testthat/testthat_Summarize.R |only FSA-0.8.23/FSA/tests/testthat/testthat_VonBertalanffy.R |only FSA-0.8.23/FSA/tests/testthat/testthat_WSWR.R |only FSA-0.8.23/FSA/tests/testthat/testthat_addZeroCatch.R |only FSA-0.8.23/FSA/tests/testthat/testthat_bootstrap.R |only FSA-0.8.23/FSA/tests/testthat/testthat_capHist.R |only FSA-0.8.23/FSA/tests/testthat/testthat_catchCurve.R |only FSA-0.8.23/FSA/tests/testthat/testthat_ciDists.R |only FSA-0.8.23/FSA/tests/testthat/testthat_comparisonsDVR.R |only FSA-0.8.23/FSA/tests/testthat/testthat_depletion.R |only FSA-0.8.23/FSA/tests/testthat/testthat_dunnTest.R |only FSA-0.8.23/FSA/tests/testthat/testthat_expandCounts.R |only FSA-0.8.23/FSA/tests/testthat/testthat_expandLenFreq.R |only FSA-0.8.23/FSA/tests/testthat/testthat_extraTests.R |only FSA-0.8.23/FSA/tests/testthat/testthat_fitResidPlots.R |only FSA-0.8.23/FSA/tests/testthat/testthat_growthFuns.R |only FSA-0.8.23/FSA/tests/testthat/testthat_histFormula.R |only FSA-0.8.23/FSA/tests/testthat/testthat_knitUtil.R |only FSA-0.8.23/FSA/tests/testthat/testthat_ksTest.R |only FSA-0.8.23/FSA/tests/testthat/testthat_lencat.R |only FSA-0.8.23/FSA/tests/testthat/testthat_metaM.R |only FSA-0.8.23/FSA/tests/testthat/testthat_mrClosed.R |only FSA-0.8.23/FSA/tests/testthat/testthat_mrOpen.R |only FSA-0.8.23/FSA/tests/testthat/testthat_nlsTracePlot.R |only FSA-0.8.23/FSA/tests/testthat/testthat_removal.R |only FSA-0.8.23/FSA/tests/testthat/testthat_sumTable.R |only 150 files changed, 173 insertions(+), 169 deletions(-)
Title: Object Oriented Implementation of Probability Models
Description: Implements S4 classes for probability models based on packages 'distr' and
'distrEx'.
Author: Matthias Kohl [aut, cph],
Peter Ruckdeschel [cre, cph],
R Core Team [ctb, cph] (for source file 'format.perc')
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between distrMod versions 2.8.1 dated 2019-04-07 and 2.8.2 dated 2019-05-02
DESCRIPTION | 16 +- MD5 | 32 ++--- inst/NEWS | 7 + inst/doc/distrMod.pdf |binary man/0distrMod-package.Rd | 6 - man/BetaFamily.Rd | 2 man/ExpScaleFamily.Rd | 2 man/GammaFamily.Rd | 2 man/InfoNorm.Rd | 2 man/MCEstimator.Rd | 5 man/NormType-class.Rd | 2 man/NormType.Rd | 2 man/QFNorm.Rd | 2 man/SelfNorm.Rd | 2 man/addAlphTrsp2col.Rd | 3 man/returnlevelplot.Rd | 10 + tests/Examples/distrMod-Ex.Rout.save | 187 ++++++++--------------------------- 17 files changed, 111 insertions(+), 171 deletions(-)
Title: Generate Assorted Books and Documents with R 'bookdown' Package
Description: A collection and selector of R 'bookdown' templates. 'bookdownplus' helps you write academic journal articles, guitar books, chemical equations, mails, calendars, and diaries. R 'bookdownplus' extends the features of 'bookdown', and simplifies the procedure. Users only have to choose a template, clarify the book title and author name, and then focus on writing the text. No need to struggle in 'YAML' and 'LaTeX'.
Author: Peng Zhao
Maintainer: Peng Zhao <pzhao@pzhao.net>
Diff between bookdownplus versions 1.5.6 dated 2019-03-03 and 1.5.7 dated 2019-05-02
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/fun.R | 23 ++++++++++++++--------- inst/templates/mail.zip |binary inst/templates/paper_zh.zip |binary 5 files changed, 22 insertions(+), 17 deletions(-)
Title: Functions for R Beginners
Description: Useful functions for R beginners, including hints for the arguments of the 'plot()' function, self-defined functions for error bars, user-customized pair plots and hist plots, enhanced linear regression figures, etc.. This package could be helpful to R experts as well.
Author: Peng Zhao
Maintainer: Peng Zhao <pzhao@pzhao.net>
Diff between beginr versions 0.1.6 dated 2019-02-28 and 0.1.7 dated 2019-05-02
DESCRIPTION | 8 +++--- MD5 | 7 +++-- NAMESPACE | 1 R/beginr.R | 69 ++++++++++++++++++++++++++++++++++++++++++--------------- man/tapply2.Rd |only 5 files changed, 61 insertions(+), 24 deletions(-)
Title: Data on Base Packages for Current and Previous Versions of R
Description: Provides a dataset of functions in all base packages of R versions 1.0.1 onwards.
Author: David Hugh-Jones [aut, cre]
Maintainer: David Hugh-Jones <davidhughjones@gmail.com>
Diff between rcheology versions 3.5.3.0 dated 2019-03-12 and 3.6.0.0 dated 2019-05-02
DESCRIPTION | 6 +- MD5 | 18 +++--- NEWS.md | 4 + R/rcheology.R | 4 + README.md | 84 +++++++++++++++++++++++++++++-- data/Rversions.rda |binary data/rcheology.rda |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/rcheology-package.Rd | 4 + 10 files changed, 103 insertions(+), 17 deletions(-)
Title: Semi-Confirmatory Structural Equation Modeling via Penalized
Likelihood
Description: Fits semi-confirmatory structural equation modeling (SEM) via penalized likelihood (PL) with elastic net (EN) or minimax concave penalty (MCP).
Author: Po-Hsien Huang [cre, aut],
Wen-Hsin Hu [aut]
Maintainer: Po-Hsien Huang <psyphh@gmail.com>
Diff between lslx versions 0.6.5 dated 2019-04-08 and 0.6.6 dated 2019-05-02
DESCRIPTION | 12 MD5 | 48 +- NAMESPACE | 1 R/RcppExports.R | 4 R/lslx-class.R | 106 ++-- R/lslx-extract-method.R | 412 +++++++++++------ R/lslx-fit-method.R | 104 +++- R/lslx-plot-method.R | 669 ++++++++++++++++++----------- R/lslx-s3-interface.R | 2 R/lslx-summarize-method.R | 79 +-- R/lslx-test-method.R | 42 + R/lslxFitting.R | 267 +++++++---- build/vignette.rds |binary inst/CITATION |only inst/doc/factor-analysis.html | 368 ++++++++++++--- inst/doc/missing-data-analysis.html | 319 +++++++++++-- inst/doc/multi-group-analysis.html | 309 +++++++++++-- inst/doc/regression-analysis.html | 325 +++++++++++--- inst/doc/structural-equation-modeling.html | 321 +++++++++++-- inst/doc/vignette-lslx.R |only inst/doc/vignette-lslx.Rnw |only inst/doc/vignette-lslx.pdf |only man/lslx.Rd | 104 ++-- man/plsem.Rd | 2 src/RcppExports.cpp | 15 src/lslxOptimizer.cpp | 430 +++++++++++++----- vignettes/vignette-lslx.Rnw |only vignettes/vignette-lslx.bib |only 28 files changed, 2863 insertions(+), 1076 deletions(-)
Title: Fast and Simple 'MongoDB' Client for R
Description: High-performance MongoDB client based on 'mongo-c-driver' and 'jsonlite'.
Includes support for aggregation, indexing, map-reduce, streaming, encryption,
enterprise authentication, and GridFS. The online user manual provides an overview
of the available methods in the package: <https://jeroen.github.io/mongolite/>.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>),
MongoDB, Inc [cph] (Bundled mongo-c-driver, see AUTHORS file)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between mongolite versions 2.0.1 dated 2019-03-05 and 2.0.2 dated 2019-05-02
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 3 +++ configure | 11 ++++------- src/Makevars.win | 6 ++---- 5 files changed, 17 insertions(+), 19 deletions(-)
Title: Sean 'Lahman' Baseball Database
Description: Provides the tables from the 'Sean Lahman Baseball Database' as
a set of R data.frames. It uses the data on pitching, hitting and fielding
performance and other tables from 1871 through 2018, as recorded in the 2019
version of the database. Documentation examples show how many baseball
questions can be investigated.
Author: Michael Friendly [aut],
Chris Dalzell [cre, aut],
Martin Monkman [aut],
Dennis Murphy [aut],
Vanessa Foot [ctb],
Justeena Zaki-Azat [ctb]
Maintainer: Chris Dalzell <cdalzell@gmail.com>
Diff between Lahman versions 6.0-0 dated 2017-08-15 and 7.0-1 dated 2019-05-02
DESCRIPTION | 36 ++++++---- MD5 | 139 ++++++++++++++++++++++++----------------- NEWS | 8 ++ R/playerInfo.R | 2 build |only data/AllstarFull.RData |binary data/Appearances.RData |binary data/AwardsManagers.RData |binary data/AwardsPlayers.RData |binary data/AwardsShareManagers.RData |binary data/AwardsSharePlayers.RData |binary data/Batting.RData |binary data/BattingPost.RData |binary data/CollegePlaying.RData |binary data/Fielding.RData |binary data/FieldingOF.RData |binary data/FieldingPost.RData |binary data/HallOfFame.RData |binary data/Managers.RData |binary data/ManagersHalf.RData |binary data/Master.RData |binary data/Parks.RData |only data/People.RData |only data/Pitching.RData |binary data/PitchingPost.RData |binary data/Salaries.RData |binary data/Schools.RData |binary data/SeriesPost.RData |binary data/Teams.RData |binary data/TeamsFranchises.RData |binary data/TeamsHalf.RData |binary data/datalist | 2 demo/lahman-dplyr.R | 6 - inst/doc |only inst/hex |only inst/scripts/check_revdep.R |only inst/scripts/readLahman.R | 30 +++++--- man/AllstarFull.Rd | 4 - man/Appearances.Rd | 4 - man/AwardsManagers.Rd | 2 man/AwardsPlayers.Rd | 6 - man/AwardsShareManagers.Rd | 4 - man/AwardsSharePlayers.Rd | 2 man/Batting.Rd | 14 ++-- man/BattingPost.Rd | 4 - man/CollegePlaying.Rd | 2 man/Fielding.Rd | 4 - man/FieldingOF.Rd | 2 man/FieldingPost.Rd | 4 - man/HallOfFame.Rd | 6 - man/Lahman-package.Rd | 14 ++-- man/Managers.Rd | 6 - man/ManagersHalf.Rd | 2 man/Master.Rd | 8 +- man/Parks.Rd |only man/People.Rd |only man/Pitching.Rd | 18 ++--- man/PitchingPost.Rd | 4 - man/Salaries.Rd | 2 man/Schools.Rd | 2 man/SeriesPost.Rd | 4 - man/Teams.Rd | 4 - man/TeamsFranchises.Rd | 2 man/TeamsHalf.Rd | 2 man/playerInfo.Rd | 4 - vignettes |only 66 files changed, 204 insertions(+), 149 deletions(-)
Title: Inverse Probability Weighted Estimation of Average Treatment
Effect with Misclassified Binary Outcome
Description: An implementation of the correction methods proposed by Shu and Yi (2017) <doi:10.1177/0962280217743777> for the inverse probability weighted (IPW) estimation of average treatment effect (ATE) with misclassified binary outcomes. Logistic regression model is assumed for treatment model for all implemented correction methods, and is assumed for the outcome model for the implemented doubly robust correction method. Misclassification probability given a true value of the outcome is assumed to be the same for all individuals.
Author: Di Shu <shudi1991@gmail.com>, Grace Y. Yi <yyi@uwaterloo.ca>
Maintainer: Di Shu <shudi1991@gmail.com>
Diff between ipwErrorY versions 2.0 dated 2019-04-27 and 2.1 dated 2019-05-02
DESCRIPTION | 14 +++++++------- MD5 | 20 ++++++++++---------- R/DoublyRobust.R | 8 ++++---- R/knownMisCalssProb.R | 8 ++++---- R/with2Replicates.R | 8 ++++---- R/withValidationData.R | 12 ++++++------ man/Est2Replicates.Rd | 8 ++++---- man/EstValidation.Rd | 12 ++++++------ man/KnownError.Rd | 8 ++++---- man/KnownErrorDR.Rd | 10 +++++----- man/ipwErrorY-package.Rd | 6 +++--- 11 files changed, 57 insertions(+), 57 deletions(-)
Title: Australian Tax Policy Analysis
Description: Utilities for costing and evaluating Australian tax policy, including high-performance tax and transfer calculators, a fast method of projecting tax collections, and an interface to common indices from the Australian Bureau of Statistics. Written to support Grattan Institute's Australian Perspectives program. For access to the 'taxstats' package, please run
install.packages("taxstats", repos = "https://hughparsonage.github.io/tax-drat/", type = "source").
N.B. The 'taxstats' package is approximately 50 MB.
Author: Hugh Parsonage [aut, cre],
Tim Cameron [aut],
Brendan Coates [aut],
Matthew Katzen [aut],
William Young [aut],
Ittima Cherastidtham [dtc],
W. Karsten [ctb],
M. Enrique Garcia [ctb],
Matt Cowgill [aut]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between grattan versions 1.7.1.0 dated 2019-03-23 and 1.7.1.1 dated 2019-05-02
DESCRIPTION | 16 MD5 | 53 NEWS.md | 5 R/LITO.R | 164 - R/cpi_inflator.R | 34 R/cpi_inflator_quarters.R | 18 R/lf_inflator.R | 29 R/model_income_tax.R | 1795 +++++++++---------- R/population_forecast.R |only R/project.R | 914 ++++----- R/sysdata.rda |binary R/wage_inflator.R | 33 build/vignette.rds |binary data/max_super_contr_base.rda |binary data/residential_property_prices.rda |binary inst/doc/datatable-implementation.html | 4 inst/doc/grattan.html | 115 - inst/doc/model-income-tax.html | 56 inst/doc/v201515-taxstats.html | 4 man/cpi_inflator.Rd | 6 man/cpi_inflator_quarters.Rd | 2 man/figures/README_compare-30-37-42-thresholds-1.png | 110 - man/lf_inflator.Rd | 6 man/model_income_tax.Rd | 13 man/wage_inflator.Rd | 6 src/MedicareLevySingle.cpp | 13 tests/testthat/test_LITO.R | 92 tests/testthat/test_cpi.R | 730 +++---- 28 files changed, 2182 insertions(+), 2036 deletions(-)
Title: Time Series Regression Models with Distributed Lag Models
Description: Provides time series regression models with one predictor using finite distributed lag models, polynomial (Almon) distributed lag models, geometric distributed lag models with Koyck transformation, and autoregressive distributed lag models. It also consists of functions for computation of h-step ahead forecasts from these models. See Baltagi (2011) <doi:10.1007/978-3-642-20059-5> for more information.
Author: Haydar Demirhan [aut, cre, cph] (<https://orcid.org/0000-0002-8565-4710>)
Maintainer: Haydar Demirhan <haydar.demirhan@rmit.edu.au>
Diff between dLagM versions 1.0.10 dated 2018-10-22 and 1.0.12 dated 2019-05-02
DESCRIPTION | 13 +++---- MD5 | 39 +++++++++++---------- NAMESPACE | 26 +++++--------- NEWS.md | 6 +++ R/ardlBound.R |only R/ardlBoundOrders.R |only R/ardlDlm.default.R | 4 +- R/ardlDlm.main.R | 90 ++++++++++++++++++++++++++++++------------------- R/dlm.default.R | 2 - R/dlm.main.R | 38 +++++++++++++++++++- R/poly.dlm.tests.R | 17 --------- README.md |only man/MASE.Rd | 2 - man/ardlBound.Rd |only man/ardlBoundOrders.Rd |only man/ardlDlm.Rd | 18 ++++++++- man/dLagM-package.Rd | 10 ++++- man/dlm.Rd | 18 +++++++++ man/finiteDLMauto.Rd | 2 - man/forecast.Rd | 2 - man/koyckDlm.Rd | 2 - man/polyDlm.Rd | 2 - man/sort.score.Rd | 2 - 23 files changed, 188 insertions(+), 105 deletions(-)
Title: Computations and Approximations for Bessel Functions
Description: Computations for Bessel function for complex, real and partly
'mpfr' (arbitrary precision) numbers; notably interfacing TOMS 644;
approximations for large arguments, experiments, etc.
Author: Martin Maechler
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between Bessel versions 0.5-5 dated 2013-12-10 and 0.6-0 dated 2019-05-02
Bessel-0.5-5/Bessel/man/bI.Rd |only Bessel-0.5-5/Bessel/tests/IJKY.Rout.save |only Bessel-0.5-5/Bessel/vignettes/fullpage.sty |only Bessel-0.6-0/Bessel/ChangeLog | 4 Bessel-0.6-0/Bessel/DESCRIPTION | 24 Bessel-0.6-0/Bessel/MD5 | 56 Bessel-0.6-0/Bessel/NAMESPACE | 15 Bessel-0.6-0/Bessel/R/I-fn.R | 256 - Bessel-0.6-0/Bessel/R/J-fn.R |only Bessel-0.6-0/Bessel/R/lsum.R |only Bessel-0.6-0/Bessel/R/toms644.R | 333 - Bessel-0.6-0/Bessel/TODO | 47 Bessel-0.6-0/Bessel/build/vignette.rds |binary Bessel-0.6-0/Bessel/inst/NEWS.Rd |only Bessel-0.6-0/Bessel/inst/doc/other-Bessels.R | 90 Bessel-0.6-0/Bessel/inst/doc/other-Bessels.Rnw | 216 Bessel-0.6-0/Bessel/inst/doc/other-Bessels.pdf |binary Bessel-0.6-0/Bessel/man/Airy.Rd | 53 Bessel-0.6-0/Bessel/man/Bessel.Rd | 71 Bessel-0.6-0/Bessel/man/Hankel.Rd | 27 Bessel-0.6-0/Bessel/man/besselI.nuAsym.Rd | 33 Bessel-0.6-0/Bessel/man/besselIasym.Rd | 32 Bessel-0.6-0/Bessel/man/besselIs.Rd |only Bessel-0.6-0/Bessel/man/besselJs.Rd |only Bessel-0.6-0/Bessel/src/init.c |only Bessel-0.6-0/Bessel/src/zbsubs.c | 5451 ++++++++++-------------- Bessel-0.6-0/Bessel/src/zbsubs.h | 61 Bessel-0.6-0/Bessel/tests/Bessel_asymp.R | 6 Bessel-0.6-0/Bessel/tests/IJKY.R | 420 + Bessel-0.6-0/Bessel/tests/r_I.rds |only Bessel-0.6-0/Bessel/tests/r_i2.rds |only Bessel-0.6-0/Bessel/tests/zr_IJKY.rds |only Bessel-0.6-0/Bessel/vignettes/Bessel.bib | 78 Bessel-0.6-0/Bessel/vignettes/myVignette.sty | 12 Bessel-0.6-0/Bessel/vignettes/other-Bessels.Rnw | 216 35 files changed, 4009 insertions(+), 3492 deletions(-)
Title: Teaching Hydrological Modelling with the GR Rainfall-Runoff
Models ('Shiny' Interface Included)
Description: Add-on package to the 'airGR' package that simplifies its use and is aimed at being used for teaching hydrology. The package provides 1) three functions that allow to complete very simply a hydrological modelling exercise 2) plotting functions to help students to explore observed data and to interpret the results of calibration and simulation of the GR ('GĂ©nie rural') models 3) a 'Shiny' graphical interface that allows for displaying the impact of model parameters on hydrographs and models internal variables.
Author: Olivier Delaigue [aut, cre] (<https://orcid.org/0000-0002-7668-8468>),
Laurent Coron [aut] (<https://orcid.org/0000-0002-1503-6204>),
Pierre Brigode [aut] (<https://orcid.org/0000-0001-8257-0741>),
Guillaume Thirel [ctb] (<https://orcid.org/0000-0002-1444-1830>)
Maintainer: Olivier Delaigue <airGR@irstea.fr>
Diff between airGRteaching versions 0.2.6.27 dated 2019-04-24 and 0.2.6.29 dated 2019-05-02
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 18 ++++++++++++++++-- inst/ShinyGR/server.R | 18 +++++++++++++++--- inst/ShinyGR/ui.R | 4 ++-- 5 files changed, 41 insertions(+), 15 deletions(-)
More information about heuristicsmineR at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-16 0.5.3
2018-12-30 0.5.2