Sat, 04 May 2019

Package spls updated to version 2.2-3 with previous version 2.2-2 dated 2018-03-21

Title: Sparse Partial Least Squares (SPLS) Regression and Classification
Description: Provides functions for fitting a sparse partial least squares (SPLS) regression and classification (Chun and Keles (2010) <doi:10.1111/j.1467-9868.2009.00723.x>).
Author: Dongjun Chung <chungdon@stat.wisc.edu>, Hyonho Chun <chun@stat.wisc.edu>, Sunduz Keles <keles@stat.wisc.edu>
Maintainer: Valentin Todorov <valentin.todorov@chello.at>

Diff between spls versions 2.2-2 dated 2018-03-21 and 2.2-3 dated 2019-05-04

 ChangeLog                 |    8 +++++++-
 DESCRIPTION               |    8 ++++----
 MD5                       |   10 +++++-----
 build/vignette.rds        |binary
 inst/doc/spls-example.pdf |binary
 tests/tspls.Rout.save     |   28 ++++++++++++++--------------
 6 files changed, 30 insertions(+), 24 deletions(-)

More information about spls at CRAN
Permanent link

Package rcrossref updated to version 0.9.2 with previous version 0.9.0 dated 2019-01-14

Title: Client for Various 'CrossRef' 'APIs'
Description: Client for various 'CrossRef' 'APIs', including 'metadata' search with their old and newer search 'APIs', get 'citations' in various formats (including 'bibtex', 'citeproc-json', 'rdf-xml', etc.), convert 'DOIs' to 'PMIDs', and 'vice versa', get citations for 'DOIs', and get links to full text of articles when available.
Author: Scott Chamberlain [aut, cre] (<https://orcid.org/0000-0003-1444-9135>), Hao Zhu [aut], Najko Jahn [aut], Carl Boettiger [aut], Karthik Ram [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>

Diff between rcrossref versions 0.9.0 dated 2019-01-14 and 0.9.2 dated 2019-05-04

 DESCRIPTION                                                 |   10 
 MD5                                                         |   81 +--
 NEWS.md                                                     |   13 
 R/cr_fundref.r                                              |   15 
 R/cr_journals.r                                             |   18 
 R/cr_members.r                                              |   16 
 R/cr_prefixes.r                                             |   17 
 R/cr_types.R                                                |   18 
 R/cr_works.R                                                |   50 +
 R/id_converter.R                                            |   37 +
 R/requestor.R                                               |   18 
 README.md                                                   |  166 ++----
 build/vignette.rds                                          |binary
 inst/doc/crossref_vignette.Rmd                              |   90 +--
 inst/doc/crossref_vignette.html                             |   90 +--
 inst/vign/crossref_vignette.md                              |   90 +--
 man/cr_agency.Rd                                            |    4 
 man/cr_cn.Rd                                                |    4 
 man/cr_funders.Rd                                           |    7 
 man/cr_journals.Rd                                          |    7 
 man/cr_members.Rd                                           |    7 
 man/cr_prefixes.Rd                                          |    7 
 man/cr_types.Rd                                             |    7 
 man/cr_works.Rd                                             |    7 
 man/id_converter.Rd                                         |   26 
 tests/fixtures/cr_citation_count.yml                        |   70 +-
 tests/fixtures/cr_cn_different_base_urls.yml                |  314 +++++-------
 tests/fixtures/cr_funders_with_cursor_and_progress_bar.yml  |only
 tests/fixtures/cr_journals_with_cursor_and_progress_bar.yml |only
 tests/fixtures/cr_members_with_cursor_and_progress_bar.yml  |only
 tests/fixtures/cr_prefixes_with_cursor_and_progress_bar.yml |only
 tests/fixtures/cr_types_with_cursor_and_progress_bar.yml    |only
 tests/fixtures/cr_works_with_cursor_and_progress_bar.yml    |only
 tests/fixtures/id_converter.yml                             |only
 tests/fixtures/id_converter_fails_well.yml                  |only
 tests/testthat/test-cr_citation_count.R                     |   26 
 tests/testthat/test-cr_cn.R                                 |    2 
 tests/testthat/test-cr_funders.R                            |   10 
 tests/testthat/test-cr_journals.R                           |   10 
 tests/testthat/test-cr_members_cursor.R                     |   10 
 tests/testthat/test-cr_prefixes.R                           |   10 
 tests/testthat/test-cr_types.R                              |   10 
 tests/testthat/test-cr_works_.R                             |    2 
 tests/testthat/test-cr_works_cursor.R                       |   10 
 tests/testthat/test-id_converter.R                          |only
 vignettes/crossref_vignette.Rmd                             |   90 +--
 46 files changed, 770 insertions(+), 599 deletions(-)

More information about rcrossref at CRAN
Permanent link

Package googleComputeEngineR updated to version 0.3.0 with previous version 0.2.0 dated 2017-09-16

Title: R Interface with Google Compute Engine
Description: Interact with the 'Google Compute Engine' API in R. Lets you create, start and stop instances in the 'Google Cloud'. Support for preconfigured instances, with templates for common R needs.
Author: Mark Edmondson [aut, cre] (<https://orcid.org/0000-0002-8434-3881>), Scott Chamberlain [ctb], Winston Chang [ctb], Henrik Bengtsson [ctb], Jacki Novik [ctb]
Maintainer: Mark Edmondson <r@sunholo.com>

Diff between googleComputeEngineR versions 0.2.0 dated 2017-09-16 and 0.3.0 dated 2019-05-04

 googleComputeEngineR-0.2.0/googleComputeEngineR/R/container_builder.R                                 |only
 googleComputeEngineR-0.2.0/googleComputeEngineR/inst/cloudconfig/example.yaml                         |only
 googleComputeEngineR-0.2.0/googleComputeEngineR/inst/dockerfiles/cloudDataLabR/googleDatalabR.nb.html |only
 googleComputeEngineR-0.2.0/googleComputeEngineR/inst/dockerfiles/demoDockerAppEngine/README.html      |only
 googleComputeEngineR-0.2.0/googleComputeEngineR/inst/dockerfiles/gceScheduler/scheduled-rscripts.html |only
 googleComputeEngineR-0.2.0/googleComputeEngineR/inst/startupscripts/centos7cuda8.sh                   |only
 googleComputeEngineR-0.2.0/googleComputeEngineR/man/as.container.Rd                                   |only
 googleComputeEngineR-0.2.0/googleComputeEngineR/man/as.gce_instance.Rd                                |only
 googleComputeEngineR-0.2.0/googleComputeEngineR/man/as.gce_instance_name.Rd                           |only
 googleComputeEngineR-0.2.0/googleComputeEngineR/man/as.gce_instance_name_one.Rd                       |only
 googleComputeEngineR-0.2.0/googleComputeEngineR/man/auth_email.Rd                                     |only
 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_check_container.Rd                            |only
 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_delete_zone_op.Rd                             |only
 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_future_install_packages.Rd                    |only
 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_get_zone_op.Rd                                |only
 googleComputeEngineR-0.2.0/googleComputeEngineR/man/get_cloud_init_file.Rd                            |only
 googleComputeEngineR-0.2.0/googleComputeEngineR/man/get_template_file.Rd                              |only
 googleComputeEngineR-0.2.0/googleComputeEngineR/man/is.gce_global_operation.Rd                        |only
 googleComputeEngineR-0.2.0/googleComputeEngineR/man/is.gce_instance.Rd                                |only
 googleComputeEngineR-0.2.0/googleComputeEngineR/man/is.gce_region_operation.Rd                        |only
 googleComputeEngineR-0.2.0/googleComputeEngineR/man/is.gce_zone_operation.Rd                          |only
 googleComputeEngineR-0.2.0/googleComputeEngineR/vignettes/remote-cluster.Rmd                          |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/DESCRIPTION                                           |   19 
 googleComputeEngineR-0.3.0/googleComputeEngineR/LICENSE                                               |    2 
 googleComputeEngineR-0.3.0/googleComputeEngineR/MD5                                                   |  268 +++++-----
 googleComputeEngineR-0.3.0/googleComputeEngineR/NAMESPACE                                             |   23 
 googleComputeEngineR-0.3.0/googleComputeEngineR/NEWS.md                                               |   21 
 googleComputeEngineR-0.3.0/googleComputeEngineR/R/auth.R                                              |   32 -
 googleComputeEngineR-0.3.0/googleComputeEngineR/R/build.R                                             |    5 
 googleComputeEngineR-0.3.0/googleComputeEngineR/R/cloud-init.R                                        |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/R/container.R                                         |  138 ++++-
 googleComputeEngineR-0.3.0/googleComputeEngineR/R/firewalls.R                                         |    3 
 googleComputeEngineR-0.3.0/googleComputeEngineR/R/future.R                                            |  198 ++++---
 googleComputeEngineR-0.3.0/googleComputeEngineR/R/googleComputeEngineR.R                              |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/R/gpus.R                                              |   73 +-
 googleComputeEngineR-0.3.0/googleComputeEngineR/R/harbor_container.R                                  |    8 
 googleComputeEngineR-0.3.0/googleComputeEngineR/R/harbor_gce.R                                        |    8 
 googleComputeEngineR-0.3.0/googleComputeEngineR/R/instances_admin.R                                   |   30 -
 googleComputeEngineR-0.3.0/googleComputeEngineR/R/metadata.R                                          |   79 ++
 googleComputeEngineR-0.3.0/googleComputeEngineR/R/min-cpu-platform.R                                  |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/R/networks.R                                          |   24 
 googleComputeEngineR-0.3.0/googleComputeEngineR/R/operations.R                                        |   78 --
 googleComputeEngineR-0.3.0/googleComputeEngineR/R/options.R                                           |   35 -
 googleComputeEngineR-0.3.0/googleComputeEngineR/R/print-methods.R                                     |    2 
 googleComputeEngineR-0.3.0/googleComputeEngineR/R/projects.R                                          |    5 
 googleComputeEngineR-0.3.0/googleComputeEngineR/R/scheduler.R                                         |    8 
 googleComputeEngineR-0.3.0/googleComputeEngineR/R/service-accounts.R                                  |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/R/ssh.R                                               |    3 
 googleComputeEngineR-0.3.0/googleComputeEngineR/R/ssh_admin.R                                         |    4 
 googleComputeEngineR-0.3.0/googleComputeEngineR/R/startup-scripts.R                                   |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/R/template.R                                          |  197 +++----
 googleComputeEngineR-0.3.0/googleComputeEngineR/R/utilities.R                                         |   29 -
 googleComputeEngineR-0.3.0/googleComputeEngineR/R/vms.R                                               |  158 +++--
 googleComputeEngineR-0.3.0/googleComputeEngineR/build/vignette.rds                                    |binary
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/cloudconfig/dynamic.yml                          |   19 
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/cloudconfig/opencpu.yaml                         |   20 
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/cloudconfig/r-base.yaml                          |   17 
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/cloudconfig/rstudio-gpu.yaml                     |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/cloudconfig/rstudio-shiny.yaml                   |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/cloudconfig/rstudio.yaml                         |   25 
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/cloudconfig/shiny.yaml                           |   24 
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/doc/creating-vms.html                            |   42 -
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/doc/docker-ssh-futures.html                      |   40 -
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/doc/docker.Rmd                                   |   87 ++-
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/doc/docker.html                                  |  188 ++++---
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/doc/example-workflows.html                       |    4 
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/doc/gpu.Rmd                                      |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/doc/gpu.html                                     |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/doc/installation-and-authentication.Rmd          |    6 
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/doc/installation-and-authentication.html         |   24 
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/doc/massive-parallel.Rmd                         |  221 +++++++-
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/doc/massive-parallel.html                        |  204 ++++++-
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/doc/opencpu-api-server.html                      |   20 
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/doc/persistent-rstudio.Rmd                       |   99 ++-
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/doc/persistent-rstudio.html                      |  117 ++--
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/doc/remote-cluster.R                             |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/doc/remote-cluster.html                          |    4 
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/doc/rstudio-team.html                            |    4 
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/doc/scheduled-rscripts.html                      |   26 
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/doc/shiny-app.html                               |   56 +-
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/doc/single-scheduler.html                        |   38 -
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/doc/troubleshooting.Rmd                          |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/doc/troubleshooting.html                         |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/dockerfiles/demoDockerAppEngine/auth.json        |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/dockerfiles/persistentRStudio/Rprofile.site      |    2 
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/dockerfiles/rstudio-k8s                          |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/dockerfiles/rstudio-keras                        |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/dockerfiles/shiny-googleAuthRdemo/shiny/server.R |    2 
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/dockerfiles/testTrigger                          |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/nginx                                            |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/startupscripts/dynamic.sh                        |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/startupscripts/opencpu.sh                        |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/startupscripts/r-base.sh                         |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/startupscripts/rstudio-gpu.sh                    |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/startupscripts/rstudio-shiny.sh                  |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/startupscripts/rstudio.sh                        |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/inst/startupscripts/shiny.sh                          |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/AttachedDisk.Rd                                   |    1 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/Disk.Rd                                           |    5 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/Instance.Rd                                       |    6 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/Metadata.Rd                                       |    1 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/docker_cmd.gce_instance.Rd                        |    4 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_attach_disk.Rd                                |   11 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_auth.Rd                                       |   18 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_check_gpu.Rd                                  |    1 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_container_logs.Rd                             |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_delete_firewall_rule.Rd                       |    1 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_get_firewall_rule.Rd                          |    1 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_get_global_project.Rd                         |    1 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_get_global_zone.Rd                            |    1 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_get_metadata_project.Rd                       |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_get_op.Rd                                     |    2 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_list_disks_all.Rd                             |    4 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_list_firewall_rules.Rd                        |    1 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_list_gpus.Rd                                  |   10 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_list_instances.Rd                             |    5 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_list_machinetype.Rd                           |    5 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_list_registry.Rd                              |    1 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_make_boot_disk.Rd                             |    6 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_make_disk.Rd                                  |   10 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_make_firewall_rule.Rd                         |    4 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_make_firewall_webports.Rd                     |    1 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_pull_registry.Rd                              |    1 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_push_registry.Rd                              |    1 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_schedule_docker.Rd                            |    9 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_set_metadata.Rd                               |   17 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_set_mincpuplatform.Rd                         |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_ssh.Rd                                        |   12 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_ssh_addkeys.Rd                                |    1 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_ssh_browser.Rd                                |    1 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_ssh_setup.Rd                                  |    1 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_startup_logs.Rd                               |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_tag_container.Rd                              |    1 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_vm.Rd                                         |    6 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_vm_cluster.Rd                                 |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_vm_container.Rd                               |   17 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_vm_create.Rd                                  |   26 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_vm_delete.Rd                                  |    4 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_vm_gpu.Rd                                     |   21 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_vm_logs.Rd                                    |    7 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_vm_reset.Rd                                   |    4 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_vm_scheduler.Rd                               |    1 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_vm_start.Rd                                   |    4 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_vm_stop.Rd                                    |    4 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_vm_template.Rd                                |   26 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/gce_wait.Rd                                       |    3 
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/googleComputeEngineR.Rd                           |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/makeDockerClusterPSOCK.Rd                         |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/read_cloud_init_file.Rd                           |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/man/read_shell_startup_file.Rd                        |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/tests/testthat.R                                      |    5 
 googleComputeEngineR-0.3.0/googleComputeEngineR/tests/testthat/test_externalIP.R                      |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/vignettes/build-trigger-menu.png                      |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/vignettes/build-trigger-running.png                   |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/vignettes/build-trigger-settings.png                  |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/vignettes/deeplearning-with-r-book.jpg                |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/vignettes/docker.Rmd                                  |   87 ++-
 googleComputeEngineR-0.3.0/googleComputeEngineR/vignettes/gpu.Rmd                                     |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/vignettes/installation-and-authentication.Rmd         |    6 
 googleComputeEngineR-0.3.0/googleComputeEngineR/vignettes/massive-parallel.Rmd                        |  221 +++++++-
 googleComputeEngineR-0.3.0/googleComputeEngineR/vignettes/persistent-rstudio.Rmd                      |   99 ++-
 googleComputeEngineR-0.3.0/googleComputeEngineR/vignettes/rstudio-gpu.png                             |only
 googleComputeEngineR-0.3.0/googleComputeEngineR/vignettes/troubleshooting.Rmd                         |only
 163 files changed, 2214 insertions(+), 1210 deletions(-)

More information about googleComputeEngineR at CRAN
Permanent link

Package blmeco updated to version 1.3 with previous version 1.2 dated 2018-11-06

Title: Data Files and Functions Accompanying the Book "Bayesian Data Analysis in Ecology using R, BUGS and Stan"
Description: Data files and functions accompanying the book Korner-Nievergelt, Roth, von Felten, Guelat, Almasi, Korner-Nievergelt (2015) "Bayesian Data Analysis in Ecology using R, BUGS and Stan", Elsevier, New York.
Author: Fraenzi Korner-Nievergelt, Tobias Roth, Stefanie von Felten, Jerome Guelat, Bettina Almasi, Pius Korner-Nievergelt
Maintainer: Fraenzi Korner-Nievergelt <fraenzi.korner@oikostat.ch>

Diff between blmeco versions 1.2 dated 2018-11-06 and 1.3 dated 2019-05-04

 DESCRIPTION                      |    8 ++++----
 MD5                              |    6 +++---
 R/loo.cv.r                       |    6 +++++-
 R/triplot.normal.knownvariance.R |   10 +++++++++-
 4 files changed, 21 insertions(+), 9 deletions(-)

More information about blmeco at CRAN
Permanent link

Package bivrp updated to version 1.2 with previous version 1.1 dated 2018-06-08

Title: Bivariate Residual Plots with Simulation Polygons
Description: Generates bivariate residual plots with simulation polygons for any diagnostics and bivariate model from which functions to extract the desired diagnostics, simulate new data and refit the models are available.
Author: Rafael de Andrade Moral [aut, cre], John Hinde [aut]
Maintainer: Rafael de Andrade Moral <rafael.deandrademoral@mu.ie>

Diff between bivrp versions 1.1 dated 2018-06-08 and 1.2 dated 2019-05-04

 bivrp-1.1/bivrp/R/is.point.inside.R       |only
 bivrp-1.1/bivrp/man/is.point.inside.Rd    |only
 bivrp-1.2/bivrp/DESCRIPTION               |   18 +++---
 bivrp-1.2/bivrp/MD5                       |   26 ++++-----
 bivrp-1.2/bivrp/NAMESPACE                 |   15 ++---
 bivrp-1.2/bivrp/R/bivrp-internal.R        |   82 ++++++++++++++++++++----------
 bivrp-1.2/bivrp/R/bivrp.R                 |   47 ++++++++++++-----
 bivrp-1.2/bivrp/R/is_point_inside.R       |only
 bivrp-1.2/bivrp/R/plot.bivrp.R            |   63 +++++++++++++----------
 bivrp-1.2/bivrp/R/polygon-operations.R    |   50 +++++++++++++-----
 bivrp-1.2/bivrp/build/partial.rdb         |binary
 bivrp-1.2/bivrp/man/bivrp-internal.Rd     |   10 +--
 bivrp-1.2/bivrp/man/bivrp.Rd              |   50 +++++++++---------
 bivrp-1.2/bivrp/man/is_point_inside.Rd    |only
 bivrp-1.2/bivrp/man/plot.bivrp.Rd         |   17 ++++--
 bivrp-1.2/bivrp/man/polygon-operations.Rd |   48 +++++++++++------
 16 files changed, 265 insertions(+), 161 deletions(-)

More information about bivrp at CRAN
Permanent link

Package AzureContainers updated to version 1.0.2 with previous version 1.0.1 dated 2019-02-14

Title: Interface to 'Container Instances', 'Docker Registry' and 'Kubernetes' in 'Azure'
Description: An interface to container functionality in Microsoft's 'Azure' cloud: <https://azure.microsoft.com/en-us/overview/containers/>. Manage 'Azure Container Instance' (ACI), 'Azure Container Registry' (ACR) and 'Azure Kubernetes Service' (AKS) resources, push and pull images, and deploy services. On the client side, lightweight shells to the 'docker', 'kubectl' and 'helm' commandline tools are provided.
Author: Hong Ooi [aut, cre], Bill Liang [ctb] (Assistance debugging MMLS on Kubernetes), Ramkumar Chandrasekaran [ctb] (Original blog article on Dockerising MMLS), Microsoft [cph]
Maintainer: Hong Ooi <hongooi@microsoft.com>

Diff between AzureContainers versions 1.0.1 dated 2019-02-14 and 1.0.2 dated 2019-05-04

 AzureContainers-1.0.1/AzureContainers/inst/CITATION                      |only
 AzureContainers-1.0.2/AzureContainers/DESCRIPTION                        |   11 
 AzureContainers-1.0.2/AzureContainers/MD5                                |   31 
 AzureContainers-1.0.2/AzureContainers/NEWS.md                            |    8 
 AzureContainers-1.0.2/AzureContainers/R/add_aci_methods.R                |    9 
 AzureContainers-1.0.2/AzureContainers/R/add_acr_methods.R                |    5 
 AzureContainers-1.0.2/AzureContainers/R/add_aks_methods.R                |   98 +
 AzureContainers-1.0.2/AzureContainers/R/az_container_instance.R          |    3 
 AzureContainers-1.0.2/AzureContainers/R/az_kubernetes_service.R          |   30 
 AzureContainers-1.0.2/AzureContainers/build/vignette.rds                 |binary
 AzureContainers-1.0.2/AzureContainers/inst/doc/vig01_plumber_deploy.html |  474 ++++++---
 AzureContainers-1.0.2/AzureContainers/inst/doc/vig02_mmls_deploy.html    |  510 +++++++---
 AzureContainers-1.0.2/AzureContainers/man/aks.Rd                         |    4 
 AzureContainers-1.0.2/AzureContainers/man/create_aci.Rd                  |    3 
 AzureContainers-1.0.2/AzureContainers/man/create_acr.Rd                  |    1 
 AzureContainers-1.0.2/AzureContainers/man/create_aks.Rd                  |    2 
 AzureContainers-1.0.2/AzureContainers/tests/testthat/test02_aci.R        |    4 
 17 files changed, 849 insertions(+), 344 deletions(-)

More information about AzureContainers at CRAN
Permanent link

New package vroom with initial version 1.0.0
Package: vroom
Title: Read and Write Rectangular Text Data Quickly
Version: 1.0.0
Authors@R: c(person(given = "Jim", family = "Hester", role = c("aut", "cre"), email = "james.f.hester@gmail.com", comment = c(ORCID = "0000-0002-2739-7082")), person(given = "Hadley", family = "Wickham", role = "aut", email = "hadley@rstudio.com", comment = c(ORCID = "0000-0003-4757-117X")), person(given = "https://github.com/mandreyel/", role = "cph", comment = "mio library"), person(given = "R Core Team", role = "ctb", comment = "localtime.c code adapted from R"), person(given = "Jukka", family = "Jylänki", role = "cph", comment = "grisu3 implementation"), person(given = "Mikkel", family = "Jørgensen", role = "cph", comment = "grisu3 implementation"), person(given = "RStudio", role = c("cph", "fnd")))
Description: The goal of 'vroom' is to read and write data (like 'csv', 'tsv' and 'fwf') quickly. When reading it uses a quick initial indexing step, then reads the values lazily , so only the data you actually use needs to be read. The writer formats the data in parallel and writes to disk asynchronously from formatting.
License: GPL-3
URL: https://github.com/r-lib/vroom
BugReports: https://github.com/r-lib/vroom/issues
Depends: R (>= 3.1)
Imports: crayon, glue, hms, Rcpp (>= 0.12.18.3), rlang, tibble (>= 2.0.0), tidyselect, withr
Suggests: bench (>= 1.0.2), covr, curl, dplyr, forcats, fs, ggplot2, knitr, prettyunits, purrr, readr (>= 1.3.1), rmarkdown, scales, spelling, testthat, tidyr
LinkingTo: progress, Rcpp
VignetteBuilder: knitr
Copyright: file COPYRIGHTS
Encoding: UTF-8
Language: en-US
LazyData: true
RoxygenNote: 6.1.1
SystemRequirements: C++11
NeedsCompilation: yes
Packaged: 2019-05-03 15:32:39 UTC; jhester
Author: Jim Hester [aut, cre] (<https://orcid.org/0000-0002-2739-7082>), Hadley Wickham [aut] (<https://orcid.org/0000-0003-4757-117X>), https://github.com/mandreyel/ [cph] (mio library), R Core Team [ctb] (localtime.c code adapted from R), Jukka Jylänki [cph] (grisu3 implementation), Mikkel Jørgensen [cph] (grisu3 implementation), RStudio [cph, fnd]
Maintainer: Jim Hester <james.f.hester@gmail.com>
Repository: CRAN
Date/Publication: 2019-05-04 17:10:03 UTC

More information about vroom at CRAN
Permanent link

New package tealeaves with initial version 1.0.0
Package: tealeaves
Version: 1.0.0
Date: 2019-05-03
Title: Solve for Leaf Temperature Using Energy Balance
Authors@R: person("Chris", "Muir", role = c("aut", "cre"), email = "cdmuir@hawaii.edu", comment = c(ORCID = "0000-0003-2555-3878"))
Depends: R (>= 3.5.0), units (>= 0.6.0)
Imports: crayon (>= 1.3.0), dplyr (>= 0.8.0), furrr (>= 0.1.0), future (>= 1.10.0), glue (>= 1.3.0), ggplot2 (>= 3.1.0), magrittr (>= 1.5.0), methods (>= 3.5.0), purrr (>= 0.3.0), rlang (>= 0.3.0), stringr (>= 1.3.0), tidyr (>= 0.8.2)
Suggests: testthat, knitr, rmarkdown
Description: Implements models of leaf temperature using energy balance. It uses units to ensure that parameters are properly specified and transformed before calculations. It allows separate lower and upper surface conductances to heat and water vapour, so sensible and latent heat loss are calculated for each surface separately as in Foster and Smith (1986) <doi:10.1111/j.1365-3040.1986.tb02108.x>. It's straightforward to model leaf temperature over environmental gradients such as light, air temperature, humidity, and wind. It can also model leaf temperature over trait gradients such as leaf size or stomatal conductance. Other references are Monteith and Unsworth (2013, ISBN:9780123869104), Nobel (2009, ISBN:9780123741431), and Okajima et al. (2012) <doi:10.1007/s11284-011-0905-5>.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2019-05-03 21:56:17 UTC; cdmuir
Author: Chris Muir [aut, cre] (<https://orcid.org/0000-0003-2555-3878>)
Maintainer: Chris Muir <cdmuir@hawaii.edu>
Repository: CRAN
Date/Publication: 2019-05-04 16:40:03 UTC

More information about tealeaves at CRAN
Permanent link

New package SmartEDA with initial version 0.3.1
Package: SmartEDA
Type: Package
Title: Summarize and Explore the Data
Version: 0.3.1
Author: Dayanand Ubrangala; Kiran R; Ravi Prasad Kondapalli
Maintainer: Dayanand Ubrangala<daya6489@gmail.com>
Depends: R (>= 3.3.0)
Imports: ggplot2(>= 2.2.1),sampling(>= 2.8),scales(>= 0.5.0),rmarkdown(>= 1.9),ISLR(>= 1.2),data.table(>= 1.10.4-3),gridExtra(>= 2.3),GGally(>= 1.4.0)
Description: Exploratory analysis on any input data describing the structure and the relationships present in the data. The package automatically select the variable and does related descriptive statistics. Analyzing information value, weight of evidence, custom tables, summary statistics, graphical techniques will be performed for both numeric and categorical predictors.
License: MIT + file LICENSE
Suggests: psych, Hmisc, smbinning,testthat,knitr,covr
Encoding: UTF-8
LazyData: true
Repository: CRAN
RoxygenNote: 6.1.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2019-05-04 12:10:55 UTC; dubrangala
Date/Publication: 2019-05-04 16:30:02 UTC

More information about SmartEDA at CRAN
Permanent link

Package strex updated to version 1.0.0 with previous version 0.1.3 dated 2018-11-30

Title: Extra String Manipulation Functions
Description: There are some things that I wish were easier with the 'stringr' or 'stringi' packages. The foremost of these is the extraction of numbers from strings. 'stringr' and 'stringi' make you figure out the regular expression for yourself; 'strex' takes care of this for you. There are many other handy functionalities in 'strex'. Contributions to this package are encouraged: it is intended as a miscellany of string manipulation functions that cannot be found in 'stringi' or 'stringr'.
Author: Rory Nolan [aut, cre] (<https://orcid.org/0000-0002-5239-4043>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>

Diff between strex versions 0.1.3 dated 2018-11-30 and 1.0.0 dated 2019-05-04

 strex-0.1.3/strex/R/split.R                                  |only
 strex-0.1.3/strex/R/strex.R                                  |only
 strex-0.1.3/strex/man/str_after_nth.Rd                       |only
 strex-0.1.3/strex/man/str_split_by_nums.Rd                   |only
 strex-0.1.3/strex/src/strings.cpp                            |only
 strex-0.1.3/strex/tests/testthat/test-Rcpp.R                 |only
 strex-0.1.3/strex/tests/testthat/test-abc.R                  |only
 strex-0.1.3/strex/tests/testthat/test-after-nth.R            |only
 strex-0.1.3/strex/tests/testthat/test-alphordering.R         |only
 strex-0.1.3/strex/tests/testthat/test-before-nth.R           |only
 strex-0.1.3/strex/tests/testthat/test-can-be-numeric.R       |only
 strex-0.1.3/strex/tests/testthat/test-file-extensions.R      |only
 strex-0.1.3/strex/tests/testthat/test-location.R             |only
 strex-0.1.3/strex/tests/testthat/test-nth-num-after-mth.R    |only
 strex-0.1.3/strex/tests/testthat/test-nth-num-before-mth.R   |only
 strex-0.1.3/strex/tests/testthat/test-number-extraction.R    |only
 strex-0.1.3/strex/tests/testthat/test-removal.R              |only
 strex-0.1.3/strex/tests/testthat/test-singleization.R        |only
 strex-0.1.3/strex/tests/testthat/test-splitting-by-number.R  |only
 strex-0.1.3/strex/tests/testthat/test-string-elements.R      |only
 strex-0.1.3/strex/tests/testthat/test-string-to-vec.R        |only
 strex-0.1.3/strex/tests/testthat/test-trimming.R             |only
 strex-0.1.3/strex/tests/testthat/test_utils.R                |only
 strex-1.0.0/strex/DESCRIPTION                                |   17 
 strex-1.0.0/strex/MD5                                        |  188 ++---
 strex-1.0.0/strex/NAMESPACE                                  |   10 
 strex-1.0.0/strex/NEWS.md                                    |   27 
 strex-1.0.0/strex/R/RcppExports.R                            |  166 ++--
 strex-1.0.0/strex/R/after.R                                  |   69 +
 strex-1.0.0/strex/R/all-equal.R                              |    2 
 strex-1.0.0/strex/R/alphord.R                                |   74 +-
 strex-1.0.0/strex/R/arg-match.R                              |  101 ++
 strex-1.0.0/strex/R/before.R                                 |   29 
 strex-1.0.0/strex/R/camel-case.R                             |only
 strex-1.0.0/strex/R/can-be-num.R                             |   14 
 strex-1.0.0/strex/R/currency.R                               |  162 +++-
 strex-1.0.0/strex/R/elem.R                                   |  112 ++-
 strex-1.0.0/strex/R/extract-non-nums.R                       |  226 ++++--
 strex-1.0.0/strex/R/extract-nums.R                           |  394 ++++++++---
 strex-1.0.0/strex/R/give-ext.R                               |    3 
 strex-1.0.0/strex/R/locate.R                                 |  103 +-
 strex-1.0.0/strex/R/num-after.R                              |   99 +-
 strex-1.0.0/strex/R/num-before.R                             |   89 +-
 strex-1.0.0/strex/R/remove.R                                 |    4 
 strex-1.0.0/strex/R/singleize.R                              |   14 
 strex-1.0.0/strex/R/split-by-nums.R                          |   79 +-
 strex-1.0.0/strex/R/strex-package.R                          |only
 strex-1.0.0/strex/R/to-vec.R                                 |    8 
 strex-1.0.0/strex/R/trim.R                                   |    9 
 strex-1.0.0/strex/R/utils.R                                  |  189 ++---
 strex-1.0.0/strex/build/partial.rdb                          |binary
 strex-1.0.0/strex/build/vignette.rds                         |binary
 strex-1.0.0/strex/inst/WORDLIST                              |   24 
 strex-1.0.0/strex/inst/doc/alphordering-numbers.html         |   41 -
 strex-1.0.0/strex/inst/doc/argument-matching.R               |   21 
 strex-1.0.0/strex/inst/doc/argument-matching.Rmd             |   27 
 strex-1.0.0/strex/inst/doc/argument-matching.html            |   98 ++
 strex-1.0.0/strex/inst/doc/before-and-after.html             |   41 -
 strex-1.0.0/strex/inst/doc/important-miscellany.R            |   17 
 strex-1.0.0/strex/inst/doc/important-miscellany.Rmd          |   19 
 strex-1.0.0/strex/inst/doc/important-miscellany.html         |  117 +--
 strex-1.0.0/strex/inst/doc/numbers-in-strings.R              |    4 
 strex-1.0.0/strex/inst/doc/numbers-in-strings.Rmd            |   10 
 strex-1.0.0/strex/inst/doc/numbers-in-strings.html           |  117 ++-
 strex-1.0.0/strex/man/before-and-after.Rd                    |only
 strex-1.0.0/strex/man/currency.Rd                            |   59 +
 strex-1.0.0/strex/man/str_alphord_nums.Rd                    |   36 -
 strex-1.0.0/strex/man/str_before_last_dot.Rd                 |    6 
 strex-1.0.0/strex/man/str_can_be_numeric.Rd                  |    5 
 strex-1.0.0/strex/man/str_elem.Rd                            |   12 
 strex-1.0.0/strex/man/str_elems.Rd                           |only
 strex-1.0.0/strex/man/str_extract_non_numerics.Rd            |   67 -
 strex-1.0.0/strex/man/str_extract_numbers.Rd                 |  104 +-
 strex-1.0.0/strex/man/str_give_ext.Rd                        |    2 
 strex-1.0.0/strex/man/str_locate_braces.Rd                   |   12 
 strex-1.0.0/strex/man/str_locate_nth.Rd                      |   37 -
 strex-1.0.0/strex/man/str_match_arg.Rd                       |   54 +
 strex-1.0.0/strex/man/str_nth_non_numeric.Rd                 |only
 strex-1.0.0/strex/man/str_nth_number.Rd                      |only
 strex-1.0.0/strex/man/str_nth_number_after_mth.Rd            |   66 +
 strex-1.0.0/strex/man/str_nth_number_before_mth.Rd           |   71 +
 strex-1.0.0/strex/man/str_paste_elems.Rd                     |   32 
 strex-1.0.0/strex/man/str_remove_quoted.Rd                   |    6 
 strex-1.0.0/strex/man/str_singleize.Rd                       |   20 
 strex-1.0.0/strex/man/str_split_by_numbers.Rd                |only
 strex-1.0.0/strex/man/str_split_camel_case.Rd                |    9 
 strex-1.0.0/strex/man/str_to_vec.Rd                          |    4 
 strex-1.0.0/strex/man/str_trim_anything.Rd                   |    8 
 strex-1.0.0/strex/man/strex.Rd                               |    2 
 strex-1.0.0/strex/src/RcppExports.cpp                        |  180 +----
 strex-1.0.0/strex/src/arg-match.cpp                          |only
 strex-1.0.0/strex/src/interleave.cpp                         |only
 strex-1.0.0/strex/src/list-utils.cpp                         |only
 strex-1.0.0/strex/src/mymath.h                               |only
 strex-1.0.0/strex/src/split-by-nums.cpp                      |only
 strex-1.0.0/strex/src/stod.cpp                               |only
 strex-1.0.0/strex/src/stod.h                                 |only
 strex-1.0.0/strex/src/substrs.cpp                            |only
 strex-1.0.0/strex/src/substrs.h                              |only
 strex-1.0.0/strex/tests/spelling.R                           |    6 
 strex-1.0.0/strex/tests/testthat/test-RcppExports.R          |only
 strex-1.0.0/strex/tests/testthat/test-after.R                |only
 strex-1.0.0/strex/tests/testthat/test-alphord.R              |only
 strex-1.0.0/strex/tests/testthat/test-arg-match.R            |only
 strex-1.0.0/strex/tests/testthat/test-before.R               |only
 strex-1.0.0/strex/tests/testthat/test-camel-case.R           |    2 
 strex-1.0.0/strex/tests/testthat/test-can-be-num.R           |only
 strex-1.0.0/strex/tests/testthat/test-currency.R             |  120 +++
 strex-1.0.0/strex/tests/testthat/test-elem.R                 |only
 strex-1.0.0/strex/tests/testthat/test-extract-non-numerics.R |only
 strex-1.0.0/strex/tests/testthat/test-extract-nums.R         |only
 strex-1.0.0/strex/tests/testthat/test-give-ext.R             |only
 strex-1.0.0/strex/tests/testthat/test-locate.R               |only
 strex-1.0.0/strex/tests/testthat/test-num-after.R            |only
 strex-1.0.0/strex/tests/testthat/test-num-before.R           |only
 strex-1.0.0/strex/tests/testthat/test-remove.R               |only
 strex-1.0.0/strex/tests/testthat/test-singleize.R            |only
 strex-1.0.0/strex/tests/testthat/test-split-by-nums.R        |only
 strex-1.0.0/strex/tests/testthat/test-to-vec.R               |only
 strex-1.0.0/strex/tests/testthat/test-trim.R                 |only
 strex-1.0.0/strex/tests/testthat/test-utils.R                |only
 strex-1.0.0/strex/vignettes/argument-matching.Rmd            |   27 
 strex-1.0.0/strex/vignettes/important-miscellany.Rmd         |   19 
 strex-1.0.0/strex/vignettes/numbers-in-strings.Rmd           |   10 
 124 files changed, 2521 insertions(+), 1179 deletions(-)

More information about strex at CRAN
Permanent link

New package LOGAN with initial version 1.0.0
Package: LOGAN
Title: Log File Analysis in International Large-Scale Assessments
Version: 1.0.0
Date: 2019-05-02
Description: Enables users to handle the dataset cleaning for conducting specific analyses with the log files from two international educational assessments: the Programme for International Student Assessment (PISA, <http://www.oecd.org/pisa/>) and the Programme for the International Assessment of Adult Competencies (PIAAC, <http://www.oecd.org/skills/piaac/>). An illustration of the analyses can be found on the LOGAN Shiny app (<https://loganpackage.shinyapps.io/shiny/>) on your browser.
Authors@R: c( person("Denise", "Reis Costa", email = "d.r.costa@cemo.uio.no", role = c("aut", "cre")), person("Waldir", "Leoncio", email = "waldir.leoncio@gmail.com", role = c("aut")) )
BugReports: https://github.com/derecost/LOGAN/issues
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.5)
Imports: pander (>= 0.6.1), psych (>= 1.7.8), foreign (>= 0.8-69), dplyr, ggplot2, rlang, stringr, magrittr, modules
Suggests: knitr, rmarkdown
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2019-05-04 07:52:18 UTC; waldir
Author: Denise Reis Costa [aut, cre], Waldir Leoncio [aut]
Maintainer: Denise Reis Costa <d.r.costa@cemo.uio.no>
Repository: CRAN
Date/Publication: 2019-05-04 10:30:03 UTC

More information about LOGAN at CRAN
Permanent link

New package ActivePathways with initial version 1.0.1
Package: ActivePathways
Title: Multivariate Pathway Enrichment Analysis
Version: 1.0.1
Authors@R: c(person("Helen", "Zhu", email = "helen.zhu@oicr.on.ca", role = c("aut", "cre")), person("Juri", "Reimand", email = "juri.reimand@utoronto.ca", role = "aut"), person("Jonathan", "Barenboim", email = "jon.barenboim@gmail.com", role = "aut"))
Description: An integrative method of analyzing multi omics data that conducts enrichment analysis of annotated gene sets. 'ActivePathways' uses a statistical data fusion approach, rationalizes contributing evidence and highlights associated genes, improving systems-level understanding of cellular organization in health and disease.
Depends: R (>= 3.2.3)
Imports: metap, data.table, ggplot2
License: GPL-3
BugReports: https://github.com/reimandlab/ActivePathways/issues
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Suggests: testthat, knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2019-05-03 15:59:15 UTC; hzhu
Author: Helen Zhu [aut, cre], Juri Reimand [aut], Jonathan Barenboim [aut]
Maintainer: Helen Zhu <helen.zhu@oicr.on.ca>
Repository: CRAN
Date/Publication: 2019-05-04 10:10:02 UTC

More information about ActivePathways at CRAN
Permanent link

Package sinx (with last version 0.0.11) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2019-05-02 0.0.11
2019-03-22 0.0.5

Permanent link
Package IsoplotR updated to version 2.6 with previous version 2.5 dated 2019-04-03

Title: Statistical Toolbox for Radiometric Geochronology
Description: Plots U-Pb data on Wetherill and Tera-Wasserburg concordia diagrams. Calculates concordia and discordia ages. Performs linear regression of measurements with correlated errors using 'York', 'Titterington' and 'Ludwig' approaches. Generates Kernel Density Estimates (KDEs) and Cumulative Age Distributions (CADs). Produces Multidimensional Scaling (MDS) configurations and Shepard plots of multi-sample detrital datasets using the Kolmogorov-Smirnov distance as a dissimilarity measure. Calculates 40Ar/39Ar ages, isochrons, and age spectra. Computes weighted means accounting for overdispersion. Calculates U-Th-He (single grain and central) ages, logratio plots and ternary diagrams. Processes fission track data using the external detector method and LA-ICP-MS, calculates central ages and plots fission track and other data on radial (a.k.a. 'Galbraith') plots. Constructs total Pb-U, Pb-Pb, K-Ca, Re-Os, Sm-Nd, Lu-Hf, Rb-Sr and 230Th-U isochrons as well as 230Th-U evolution plots.
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>

Diff between IsoplotR versions 2.5 dated 2019-04-03 and 2.6 dated 2019-05-04

 DESCRIPTION       |    8 -
 MD5               |   57 ++++---
 R/PD.R            |   12 -
 R/age.R           |   26 +--
 R/errorellipse.R  |    2 
 R/helioplot.R     |    2 
 R/io.R            |  146 ++++++++++++-------
 R/isochron.R      |  409 +++++++++++++++++++++++++++++++-----------------------
 R/ludwig.R        |   17 +-
 R/regression.R    |   32 ++--
 R/titterington.R  |    9 -
 R/toolbox.R       |    7 
 R/weightedmean.R  |    8 -
 R/york.R          |  127 +++++++++++-----
 README.md         |   23 +--
 data/examples.rda |binary
 inst/KCa2.csv     |   62 ++++----
 inst/KCa3.csv     |only
 inst/LuHf2.csv    |   14 -
 inst/LuHf3.csv    |only
 inst/RbSr2.csv    |   37 ++--
 inst/RbSr3.csv    |only
 inst/ReOs2.csv    |   18 +-
 inst/ReOs3.csv    |only
 inst/SmNd2.csv    |   10 -
 inst/SmNd3.csv    |only
 man/age.Rd        |   26 +--
 man/data2york.Rd  |   66 ++++++--
 man/ellipse.Rd    |    2 
 man/helioplot.Rd  |    2 
 man/isochron.Rd   |  104 ++++++++-----
 man/read.data.Rd  |   27 ++-
 32 files changed, 747 insertions(+), 506 deletions(-)

More information about IsoplotR at CRAN
Permanent link

New package collidr with initial version 0.1.0
Package: collidr
Type: Package
Title: Check for Namespace Collisions with Other Packages and Functions on CRAN
Version: 0.1.0
Imports: dplyr, stringr, utils
Author: Steve Condylios [aut, cre] (<https://orcid.org/0000-0003-0599-844X>)
Maintainer: Steve Condylios <steve.condylios@gmail.com>
BugReports: https://github.com/collidrpackage/collidr/issues
License: MIT + file LICENSE
URL: https://github.com/collidrpackage/collidr
Description: Check for namespace collisions between a string input (your function or package name) and a quarter of a million packages and functions on CRAN.
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2019-05-02 17:23:38 UTC; st
Depends: R (>= 2.10)
Repository: CRAN
Date/Publication: 2019-05-04 09:10:03 UTC

More information about collidr at CRAN
Permanent link

Package extremefit updated to version 1.0.2 with previous version 1.0.1 dated 2019-01-15

Title: Estimation of Extreme Conditional Quantiles and Probabilities
Description: Extreme value theory, nonparametric kernel estimation, tail conditional probabilities, extreme conditional quantile, adaptive estimation, quantile regression, survival probabilities.
Author: Gilles Durrieu, Ion Grama, Kevin Jaunatre, Quang-Khoai Pham, Jean-Marie Tricot
Maintainer: Kevin Jaunatre <kevin.jaunatre@hotmail.fr>

Diff between extremefit versions 1.0.1 dated 2019-01-15 and 1.0.2 dated 2019-05-04

 DESCRIPTION                |    8 ++++----
 MD5                        |    8 ++++----
 R/PackageOxygen.R          |   10 ++++++++--
 inst/doc/extremefit.pdf    |binary
 man/Pareto-Distribution.Rd |    8 +++++++-
 5 files changed, 23 insertions(+), 11 deletions(-)

More information about extremefit at CRAN
Permanent link

New package jointMeanCov with initial version 0.1.0
Package: jointMeanCov
Type: Package
Title: Joint Mean and Covariance Estimation for Matrix-Variate Data
Version: 0.1.0
Authors@R: c(person("Michael", "Hornstein", email = "mdhornstein@gmail.com", role = c("aut", "cre")), person("Roger", "Fan", email = "rogerfan@umich.edu", role = "aut"), person("Kerby", "Shedden", email="kshedden@umich.edu", role="aut"), person("Shuheng", "Zhou", email="simone.zhou@ucr.edu", role="aut"))
Maintainer: Michael Hornstein <mdhornstein@gmail.com>
Description: Jointly estimates two-group means and covariances for matrix-variate data and calculates test statistics. This package implements the algorithms defined in Hornstein, Fan, Shedden, and Zhou (2018) <doi:10.1080/01621459.2018.1429275>.
License: GPL-2
Encoding: UTF-8
LazyData: true
Imports: glasso, graphics, stats
Suggests: knitr, rmarkdown, testthat
RoxygenNote: 6.1.1
NeedsCompilation: no
Packaged: 2019-05-03 21:33:25 UTC; michaelhornstein
Author: Michael Hornstein [aut, cre], Roger Fan [aut], Kerby Shedden [aut], Shuheng Zhou [aut]
Repository: CRAN
Date/Publication: 2019-05-04 07:40:02 UTC

More information about jointMeanCov at CRAN
Permanent link

New package ivx with initial version 1.0.0
Type: Package
Package: ivx
Title: Robust Econometric Inference
Version: 1.0.0
Authors@R: c(person(given = "Kostas", family = "Vasilopoulos", role = c("cre", "aut"), email = "k.vasilopoulo@gmail.com"), person(given = "Efthymios", family = "Pavlidis", role = "aut", email = "e.pavlidis@lancaster.ac.uk"))
Description: Drawing statistical inference on the coefficients of a short- or long-horizon predictive regression with persistent regressors by using the IVX method of Magdalinos and Phillips (2009) and <doi:10.1017/S0266466608090154> Kostakis, Magdalinos and Stamatogiannis (2015) <doi:10.1093/rfs/hhu139>.
License: GPL-3
URL: https://github.com/kvasilopoulos/ivx
BugReports: https://github.com/kvasilopoulos/ivx/issues
Depends: R (>= 3.1)
Imports: magrittr (>= 1.5), Rcpp (>= 0.12.18), tibble (>= 2.1.1)
Suggests: covr (>= 3.2.1), spelling (>= 2.1), testthat (>= 2.1.1)
LinkingTo: Rcpp (>= 1.0.1), RcppArmadillo (>= 0.9.300.2.0)
Encoding: UTF-8
Language: en-US
LazyData: true
RoxygenNote: 6.1.1
NeedsCompilation: yes
Packaged: 2019-05-03 19:18:59 UTC; T460p
Author: Kostas Vasilopoulos [cre, aut], Efthymios Pavlidis [aut]
Maintainer: Kostas Vasilopoulos <k.vasilopoulo@gmail.com>
Repository: CRAN
Date/Publication: 2019-05-04 07:20:03 UTC

More information about ivx at CRAN
Permanent link

Package interp updated to version 1.0-32 with previous version 1.0-31 dated 2018-03-25

Title: Interpolation Methods
Description: Bivariate data interpolation on regular and irregular grids, either linear or using splines are the main part of this package. It is intended to provide FOSS replacement functions for the ACM licensed akima::interp and tripack::tri.mesh functions. Currently the piecewise linear interpolation part of akima::interp (and also akima::interpp) is implemented in interp::interp, this corresponds to the call akima::interp(..., linear=TRUE) which is the default setting and covers most of akima::interp use cases in depending packages. A re-implementation of Akimas spline interpolation (akima::interp(..., linear=FALSE)) is currently under development and will complete this package in a later version. Estimators for partial derivatives are already available, these are a prerequisite for the spline interpolation. The basic part is currently a GPLed triangulation algorithm (sweep hull algorithm by David Sinclair) providing the starting point for the piecewise linear interpolator. As side effect this algorithm is also used to provide replacements for the basic functions of the tripack package which also suffer from the ACM restrictions. All functions are designed to be backward compatible with their akima / tripack counterparts.
Author: Albrecht Gebhardt [aut, cre, cph] (...), Roger Bivand [aut], David Sinclair [aut, cph]
Maintainer: Albrecht Gebhardt <albrecht.gebhardt@aau.at>

Diff between interp versions 1.0-31 dated 2018-03-25 and 1.0-32 dated 2019-05-04

 ChangeLog                      |   26 +++++++
 DESCRIPTION                    |    8 +-
 MD5                            |   18 +++--
 NAMESPACE                      |    8 ++
 R/plot.voronoi.R               |  136 ++++++++++++++++++++++-------------------
 R/plot.voronoi.polygons.R      |only
 R/voronoi.area.R               |only
 R/voronoi.findrejectsites.R    |only
 R/voronoi.polygons.R           |only
 man/plot.voronoi.Rd            |    6 -
 man/plot.voronoi.polygons.Rd   |only
 man/voronoi.area.Rd            |only
 man/voronoi.findrejectsites.Rd |only
 man/voronoi.polygons.Rd        |only
 14 files changed, 129 insertions(+), 73 deletions(-)

More information about interp at CRAN
Permanent link

Package RcmdrPlugin.EZR updated to version 1.40 with previous version 1.38 dated 2019-02-01

Title: R Commander Plug-in for the EZR (Easy R) Package
Description: EZR (Easy R) adds a variety of statistical functions, including survival analyses, ROC analyses, metaanalyses, sample size calculation, and so on, to the R commander. EZR enables point-and-click easy access to statistical functions, especially for medical statistics. EZR is platform-independent and runs on Windows, Mac OS X, and UNIX. Its complete manual is available only in Japanese (Chugai Igakusha, ISBN: 978-4-498-10901-8 or Nankodo, ISBN: 978-4-524-26158-1), but an report that introduced the investigation of EZR was published in Bone Marrow Transplantation (Nature Publishing Group) as an Open article. This report can be used as a simple manual. It can be freely downloaded from the journal website as shown below. This report has been cited in more than 2,000 scientific articles.
Author: Yoshinobu Kanda
Maintainer: Yoshinobu Kanda <ycanda-tky@umin.ac.jp>

Diff between RcmdrPlugin.EZR versions 1.38 dated 2019-02-01 and 1.40 dated 2019-05-04

 DESCRIPTION                                 |   24 +++----
 MD5                                         |   22 +++---
 NEWS                                        |    4 +
 R/EZR.R                                     |   93 ++++++++++++++++++----------
 inst/CHANGES                                |    4 +
 inst/doc/EZR.htm                            |    6 -
 inst/doc/EZR.pdf                            |binary
 inst/etc/menus.txt                          |    2 
 inst/po/ja/LC_MESSAGES/R-RcmdrPlugin.EZR.mo |binary
 man/EZR.Rd                                  |    6 -
 man/EZR.dialogs.Rd                          |    2 
 po/R-RcmdrPlugin.EZR.po                     |   13 +++
 12 files changed, 108 insertions(+), 68 deletions(-)

More information about RcmdrPlugin.EZR at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.