Title: Pedigree and Genetic Groups
Description: Calculates additive and dominance genetic relationship matrices and their inverses, in matrix and tabular-sparse formats. It includes functions for checking and processing pedigree, as well as functions to calculate the matrix of genetic group contributions (Q), and adding those contributions to the genetic merit of animals (Quaas (1988) <doi:10.3168/jds.S0022-0302(88)79691-5>). Calculation of Q is computationally extensive. There are computationally optimized functions to calculate Q.
Author: Mohammad Ali Nilforooshan [aut, cre]
(<https://orcid.org/0000-0003-0339-5442>)
Maintainer: Mohammad Ali Nilforooshan <m.a.nilforooshan@gmail.com>
Diff between ggroups versions 1.2.0 dated 2019-04-13 and 1.2.1 dated 2019-05-10
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++++------ NAMESPACE | 2 ++ NEWS.md | 5 +++++ R/ggroups.R | 4 +++- R/mat2tab.R | 1 - R/tabD.R |only R/tabDinv.R |only man/ggroups-package.Rd | 4 +++- man/tabD.Rd |only man/tabDinv.Rd |only 11 files changed, 28 insertions(+), 14 deletions(-)
Title: Authoring Books and Technical Documents with R Markdown
Description: Output formats and utilities for authoring books and technical documents with R Markdown.
Author: Yihui Xie [aut, cre] (<https://orcid.org/0000-0003-0645-5666>),
JJ Allaire [ctb],
Albert Kim [ctb],
Alessandro Samuel-Rosa [ctb],
Andrzej Oles [ctb],
Aust Frederik [ctb] (<https://orcid.org/0000-0003-4900-788X>),
Bastiaan Quast [ctb],
Ben Marwick [ctb],
Chester Ismay [ctb],
Christophe Dervieux [ctb],
Clifton Franklund [ctb],
Daniel Emaasit [ctb],
David Shuman [ctb],
Dean Attali [ctb],
Drew Tyre [ctb],
Ellis Valentiner [ctb],
Frans van Dunne [ctb],
Hadley Wickham [ctb],
Jeff Allen [ctb],
Jennifer Bryan [ctb],
Jonathan McPhers [ctb],
Junwen Huang [ctb],
Kevin Cheung [ctb],
Kevin Ushey [ctb],
Kim Seonghyun [ctb],
Kirill Muller [ctb],
Luciano Selzer [ctb],
Matthew Lincoln [ctb],
Maximilian Held [ctb],
Michael Sachs [ctb],
Michal Bojanowski [ctb],
Noam Ross [ctb],
Peter Hickey [ctb],
Sahir Bhatnagar [ctb],
Steve Simpson [ctb],
Thierry Onkelinx [ctb] (<https://orcid.org/0000-0001-8804-4216>),
Vincent Fulco [ctb],
Yixuan Qiu [ctb],
Zhuoer Dong [ctb],
RStudio Inc [cph],
Bartek Szopka [ctb] (The jQuery Highlight plugin),
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/resources/AUTHORS),
MathQuill contributors [ctb] (The MathQuill library; authors listed in
inst/resources/AUTHORS),
FriendCode Inc [cph, ctb] (The gitbook style, with modifications)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between bookdown versions 0.9 dated 2018-12-21 and 0.10 dated 2019-05-10
bookdown-0.10/bookdown/DESCRIPTION | 8 - bookdown-0.10/bookdown/MD5 | 34 ++-- bookdown-0.10/bookdown/R/bookdown-package.R |only bookdown-0.10/bookdown/R/ebook.R | 2 bookdown-0.10/bookdown/R/gitbook.R | 2 bookdown-0.10/bookdown/R/html.R | 37 +++- bookdown-0.10/bookdown/R/utils.R | 8 - bookdown-0.10/bookdown/README.md | 5 bookdown-0.10/bookdown/inst/NEWS.Rd |only bookdown-0.10/bookdown/inst/resources/gitbook/css/plugin-search.css | 3 bookdown-0.10/bookdown/inst/resources/gitbook/js/app.min.js | 7 bookdown-0.10/bookdown/inst/resources/gitbook/js/jquery.highlight.js | 2 bookdown-0.10/bookdown/inst/resources/gitbook/js/plugin-bookdown.js | 31 ++-- bookdown-0.10/bookdown/inst/resources/gitbook/js/plugin-search.js | 75 +++++----- bookdown-0.10/bookdown/inst/resources/gitbook/js/plugin-sharing.js | 3 bookdown-0.10/bookdown/inst/templates/default.html | 10 - bookdown-0.10/bookdown/inst/templates/gitbook.html | 29 +-- bookdown-0.10/bookdown/man/bookdown-package.Rd |only bookdown-0.10/bookdown/man/html_document2.Rd | 5 bookdown-0.9/bookdown/NEWS.md |only 20 files changed, 146 insertions(+), 115 deletions(-)
Title: Hidden State Speciation and Extinction
Description: Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification. Beaulieu and O'Meara (2016) <doi:10.1093/sysbio/syw022>.
Author: Jeremy Beaulieu [aut, cre],
Brian O'Meara [aut],
Daniel Caetano [aut]
Maintainer: Jeremy Beaulieu <jbeaulieu@nimbios.org>
Diff between hisse versions 1.9.1 dated 2019-02-20 and 1.9.4 dated 2019-05-10
hisse-1.9.1/hisse/man/GetModelWeight.Rd |only hisse-1.9.4/hisse/DESCRIPTION | 10 hisse-1.9.4/hisse/MD5 | 67 hisse-1.9.4/hisse/NAMESPACE | 4 hisse-1.9.4/hisse/R/GetModelWeight.R | 21 hisse-1.9.4/hisse/R/fgeohisse.R | 12 hisse-1.9.4/hisse/R/geohisse.R | 21 hisse-1.9.4/hisse/R/getModelAveTipRates.R | 2 hisse-1.9.4/hisse/R/hisseNull4.R | 93 - hisse-1.9.4/hisse/R/marginRecon.R | 1200 ++++---------- hisse-1.9.4/hisse/R/misse.R | 107 - hisse-1.9.4/hisse/R/muhisse.R | 95 - hisse-1.9.4/hisse/R/plotHisse.R | 115 - hisse-1.9.4/hisse/inst/doc/GeoHiSSE-vignette.R | 9 hisse-1.9.4/hisse/inst/doc/GeoHiSSE-vignette.Rmd | 25 hisse-1.9.4/hisse/inst/doc/GeoHiSSE-vignette.pdf |binary hisse-1.9.4/hisse/inst/doc/MiSSE-vignette.pdf |binary hisse-1.9.4/hisse/inst/doc/MuHiSSE-vignette.R | 1 hisse-1.9.4/hisse/inst/doc/MuHiSSE-vignette.Rmd | 1 hisse-1.9.4/hisse/inst/doc/MuHiSSE-vignette.pdf |binary hisse-1.9.4/hisse/inst/doc/hisse-fisse-type1-vignette.pdf |binary hisse-1.9.4/hisse/inst/doc/hisse-vignette.pdf |binary hisse-1.9.4/hisse/man/GeoHiSSE.Rd | 5 hisse-1.9.4/hisse/man/GetAICWeights.Rd |only hisse-1.9.4/hisse/man/MiSSE.Rd | 19 hisse-1.9.4/hisse/man/MiSSEGreedy.Rd |only hisse-1.9.4/hisse/man/MuHiSSE.Rd | 5 hisse-1.9.4/hisse/man/fGeoHiSSE.Rd | 5 hisse-1.9.4/hisse/man/marginReconMiSSE.Rd | 3 hisse-1.9.4/hisse/man/marginReconMuHiSSE.Rd | 7 hisse-1.9.4/hisse/man/marginReconfGeoSSE.Rd | 10 hisse-1.9.4/hisse/tests/testthat/test_likelihood.R | 66 hisse-1.9.4/hisse/vignettes/GeoHiSSE-vignette.Rmd | 25 hisse-1.9.4/hisse/vignettes/GeoHiSSE-vignette.html | 21 hisse-1.9.4/hisse/vignettes/MuHiSSE-vignette.Rmd | 1 hisse-1.9.4/hisse/vignettes/MuHiSSE-vignette.html | 3 36 files changed, 835 insertions(+), 1118 deletions(-)
Title: International Assessment Data Manager
Description: Provides tools for importing, merging, and analysing data from
international assessment studies (TIMSS, PIRLS, PISA, ICILS, and PIAAC).
Author: Daniel Caro <dcarov@gmail.com>, Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Maintainer: Daniel Caro <dcarov@gmail.com>
Diff between intsvy versions 2.3 dated 2018-10-09 and 2.4 dated 2019-05-10
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/intsvy.ben.pv.R | 22 +++++++++++----------- R/intsvy.log.pv.R | 6 +++--- R/intsvy.per.pv.R | 4 ++-- R/intsvy.reg.pv.R | 4 ++-- R/intsvy.rho.pv.R | 10 +++++----- man/intsvy-package.Rd | 4 ++-- 8 files changed, 36 insertions(+), 36 deletions(-)
Title: ROC for Cross Validation Results
Description: Cross validate large genetic data while specifying clinical variables that should always be in the model using the function cv(). An ROC plot from the cross validation data with AUC can be obtained using rocplot(), which also can be used to compare different models. Framework was built to handle genetic data, but works for any data.
Author: Ben Sherwood [aut, cre]
Maintainer: Ben Sherwood <ben.sherwood@ku.edu>
Diff between roccv versions 1.1 dated 2017-11-09 and 1.2 dated 2019-05-10
DESCRIPTION | 8 ++++---- LICENSE | 2 +- MD5 | 8 ++++---- NEWS | 6 +++++- R/mainFunctions.R | 7 +++++++ 5 files changed, 21 insertions(+), 10 deletions(-)
Title: The Generalized DINA Model Framework
Description: A set of psychometric tools for cognitive diagnosis modeling based on the generalized deterministic inputs, noisy and gate (G-DINA) model by de la Torre (2011) <DOI:10.1007/s11336-011-9207-7> and its extensions, including the sequential G-DINA model by Ma and de la Torre (2016) <DOI:10.1111/bmsp.12070> for polytomous responses, and the polytomous G-DINA model by Chen and de la Torre <DOI:10.1177/0146621613479818> for polytomous attributes. Joint attribute distribution can be independent, saturated, higher-order, loglinear smoothed or structured. Q-matrix validation, item and model fit statistics, model comparison at test and item level and differential item functioning can also be conducted. A graphical user interface is also provided.
Author: Wenchao Ma [aut, cre, cph],
Jimmy de la Torre [aut, cph],
Miguel Sorrel [ctb],
Zhehan Jiang [ctb]
Maintainer: Wenchao Ma <wenchao.ma@ua.edu>
Diff between GDINA versions 2.4.0 dated 2019-03-11 and 2.5.2 dated 2019-05-10
GDINA-2.4.0/GDINA/man/internal_GDINA.Rd |only GDINA-2.5.2/GDINA/DESCRIPTION | 20 - GDINA-2.5.2/GDINA/MD5 | 45 +-- GDINA-2.5.2/GDINA/NAMESPACE | 12 GDINA-2.5.2/GDINA/NEWS.md | 10 GDINA-2.5.2/GDINA/R/ExportedFuncs.R | 117 -------- GDINA-2.5.2/GDINA/R/GDI.R | 6 GDINA-2.5.2/GDINA/R/HO.R | 86 +++--- GDINA-2.5.2/GDINA/R/ILCA.R |only GDINA-2.5.2/GDINA/R/M2.R | 2 GDINA-2.5.2/GDINA/R/MultipleGroup_Estimation.R | 10 GDINA-2.5.2/GDINA/R/RcppExports.R | 2 GDINA-2.5.2/GDINA/R/SingleGroup_Estimation.R | 70 ++--- GDINA-2.5.2/GDINA/R/extract.R | 1 GDINA-2.5.2/GDINA/R/simGDINA.R | 8 GDINA-2.5.2/GDINA/R/structuralparm.R | 2 GDINA-2.5.2/GDINA/R/utils.R | 9 GDINA-2.5.2/GDINA/README.md | 121 +++++--- GDINA-2.5.2/GDINA/build/vignette.rds |binary GDINA-2.5.2/GDINA/inst/doc/GDINA.html | 347 ++++++++++++++++++++----- GDINA-2.5.2/GDINA/man/ILCA.Rd |only GDINA-2.5.2/GDINA/man/modelfit.Rd | 2 GDINA-2.5.2/GDINA/src/Lik.cpp | 51 +-- GDINA-2.5.2/GDINA/src/RcppExports.cpp | 40 +- GDINA-2.5.2/GDINA/src/util.cpp | 48 ++- 25 files changed, 587 insertions(+), 422 deletions(-)
Title: Lightweight but Feature Complete Unit Testing Framework
Description: Provides a lightweight (zero-dependency) and easy to use
unit testing framework. Main features: install tests with
the package. Test results are treated as data that can be stored and manipulated.
Test files are R scripts interspersed with test commands, that can be programmed
over. Fully automated build-install-test sequence for packages. Skip tests when
not run locally (e.g. on CRAN). Flexible and configurable output printing. Compare
computed output with output stored with the package.
Author: Mark van der Loo [aut, cre]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between tinytest versions 0.9.2 dated 2019-04-25 and 0.9.3 dated 2019-05-10
tinytest-0.9.2/tinytest/inst/utst |only tinytest-0.9.3/tinytest/DESCRIPTION | 8 tinytest-0.9.3/tinytest/MD5 | 44 ++-- tinytest-0.9.3/tinytest/NAMESPACE | 2 tinytest-0.9.3/tinytest/NEWS | 17 + tinytest-0.9.3/tinytest/R/methods.R |only tinytest-0.9.3/tinytest/R/tinytest.R | 183 +++++-------------- tinytest-0.9.3/tinytest/README.md | 17 + tinytest-0.9.3/tinytest/inst/doc/using_tinytest.R | 74 ++++--- tinytest-0.9.3/tinytest/inst/doc/using_tinytest.Rnw | 96 +++++++-- tinytest-0.9.3/tinytest/inst/doc/using_tinytest.pdf |binary tinytest-0.9.3/tinytest/inst/tinytest |only tinytest-0.9.3/tinytest/man/build_install_test.Rd | 10 - tinytest-0.9.3/tinytest/man/expect_equal.Rd | 20 +- tinytest-0.9.3/tinytest/man/print.tinytest.Rd | 6 tinytest-0.9.3/tinytest/man/run_test_dir.Rd | 13 - tinytest-0.9.3/tinytest/man/run_test_file.Rd | 7 tinytest-0.9.3/tinytest/man/test_package.Rd | 8 tinytest-0.9.3/tinytest/man/tinytest.Rd | 4 tinytest-0.9.3/tinytest/man/tinytests.Rd | 17 + tinytest-0.9.3/tinytest/vignettes/using_tinytest.Rnw | 96 +++++++-- 21 files changed, 340 insertions(+), 282 deletions(-)
Title: Spatial Position Models
Description: Computes spatial position models: Stewart potentials, Reilly
catchment areas, Huff catchment areas.
Author: Timothée Giraud [cre, aut],
Hadrien Commenges [aut],
Joël Boulier [ctb]
Maintainer: Timothée Giraud <timothee.giraud@cnrs.fr>
Diff between SpatialPosition versions 1.2.0 dated 2017-09-06 and 2.0.0 dated 2019-05-10
SpatialPosition-1.2.0/SpatialPosition/R/contourStewart.R |only SpatialPosition-1.2.0/SpatialPosition/R/internal.R |only SpatialPosition-1.2.0/SpatialPosition/inst/doc/QGISInterface.Rmd |only SpatialPosition-1.2.0/SpatialPosition/inst/doc/QGISInterface.html |only SpatialPosition-1.2.0/SpatialPosition/man/contourStewart.Rd |only SpatialPosition-1.2.0/SpatialPosition/vignettes/QGISInterface.Rmd |only SpatialPosition-2.0.0/SpatialPosition/DESCRIPTION | 18 SpatialPosition-2.0.0/SpatialPosition/MD5 | 94 - SpatialPosition-2.0.0/SpatialPosition/NAMESPACE | 25 SpatialPosition-2.0.0/SpatialPosition/NEWS | 10 SpatialPosition-2.0.0/SpatialPosition/R/gridandmat.R | 183 +- SpatialPosition-2.0.0/SpatialPosition/R/huff.R | 149 -- SpatialPosition-2.0.0/SpatialPosition/R/isopoly.R |only SpatialPosition-2.0.0/SpatialPosition/R/mcStewart.R | 117 - SpatialPosition-2.0.0/SpatialPosition/R/package.R | 26 SpatialPosition-2.0.0/SpatialPosition/R/quickStewart.R | 156 +- SpatialPosition-2.0.0/SpatialPosition/R/rasterToContourPoly.R | 8 SpatialPosition-2.0.0/SpatialPosition/R/reilly.R | 151 -- SpatialPosition-2.0.0/SpatialPosition/R/smoothy.R | 107 - SpatialPosition-2.0.0/SpatialPosition/R/stewart.R | 148 -- SpatialPosition-2.0.0/SpatialPosition/R/utils.R |only SpatialPosition-2.0.0/SpatialPosition/README.md | 16 SpatialPosition-2.0.0/SpatialPosition/build/vignette.rds |binary SpatialPosition-2.0.0/SpatialPosition/data/hospital.RData |only SpatialPosition-2.0.0/SpatialPosition/inst/doc/SpatialPosition.R | 63 SpatialPosition-2.0.0/SpatialPosition/inst/doc/SpatialPosition.Rmd | 72 - SpatialPosition-2.0.0/SpatialPosition/inst/doc/SpatialPosition.html | 463 +++++-- SpatialPosition-2.0.0/SpatialPosition/inst/doc/StewartExample.R | 37 SpatialPosition-2.0.0/SpatialPosition/inst/doc/StewartExample.Rmd | 37 SpatialPosition-2.0.0/SpatialPosition/inst/doc/StewartExample.html | 650 ++++++---- SpatialPosition-2.0.0/SpatialPosition/man/CreateDistMatrix.Rd | 26 SpatialPosition-2.0.0/SpatialPosition/man/CreateGrid.Rd | 30 SpatialPosition-2.0.0/SpatialPosition/man/SpatialPosition.Rd | 8 SpatialPosition-2.0.0/SpatialPosition/man/hospital.Rd |only SpatialPosition-2.0.0/SpatialPosition/man/huff.Rd | 57 SpatialPosition-2.0.0/SpatialPosition/man/isopoly.Rd |only SpatialPosition-2.0.0/SpatialPosition/man/mcStewart.Rd | 54 SpatialPosition-2.0.0/SpatialPosition/man/paris.Rd |only SpatialPosition-2.0.0/SpatialPosition/man/plotHuff.Rd | 13 SpatialPosition-2.0.0/SpatialPosition/man/plotReilly.Rd | 16 SpatialPosition-2.0.0/SpatialPosition/man/plotStewart.Rd | 15 SpatialPosition-2.0.0/SpatialPosition/man/quickStewart.Rd | 86 - SpatialPosition-2.0.0/SpatialPosition/man/rasterHuff.Rd | 20 SpatialPosition-2.0.0/SpatialPosition/man/rasterReilly.Rd | 25 SpatialPosition-2.0.0/SpatialPosition/man/rasterStewart.Rd | 19 SpatialPosition-2.0.0/SpatialPosition/man/rasterToContourPoly.Rd | 5 SpatialPosition-2.0.0/SpatialPosition/man/reilly.Rd | 58 SpatialPosition-2.0.0/SpatialPosition/man/smoothy.Rd | 58 SpatialPosition-2.0.0/SpatialPosition/man/spatMask.Rd | 3 SpatialPosition-2.0.0/SpatialPosition/man/spatPts.Rd | 3 SpatialPosition-2.0.0/SpatialPosition/man/spatUnits.Rd | 3 SpatialPosition-2.0.0/SpatialPosition/man/stewart.Rd | 63 SpatialPosition-2.0.0/SpatialPosition/vignettes/SpatialPosition.Rmd | 72 - SpatialPosition-2.0.0/SpatialPosition/vignettes/StewartExample.Rmd | 37 54 files changed, 1795 insertions(+), 1406 deletions(-)
More information about SpatialPosition at CRAN
Permanent link
Title: Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for
Phylogenetic Comparative Hypotheses
Description: Fits multivariate Ornstein-Uhlenbeck types of models to continues trait data from species related by a common evolutionary history. See K. Bartoszek, J, Pienaar, P. Mostad, S. Andersson, T. F.Hansen (2012) <doi:10.1016/j.jtbi.2012.08.005>.
Author: Krzysztof Bartoszek <krzbar@protonmail.ch>
Maintainer: Krzysztof Bartoszek <krzbar@protonmail.ch>
Diff between mvSLOUCH versions 2.0.5 dated 2019-04-25 and 2.0.6 dated 2019-05-10
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/evolmodelest.R | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Translate Quantities from Strings to Integer and Back. Misc
Functions on Spanish Data
Description: Character vector to numerical translation in Euros from Spanish
spelled monetary quantities. Reverse translation from integer to Spanish.
Upper limit is up to the millions range. Geocoding via Cadastral web site.
Author: Jose Manuel Vera Oteo [aut, cre]
Maintainer: Jose Manuel Vera Oteo <vera.josemanuel@gmail.com>
Diff between spanish versions 0.3.2 dated 2018-01-08 and 0.4.2 dated 2019-05-10
DESCRIPTION | 27 ++--- MD5 | 26 +++-- NAMESPACE | 12 +- R/cadastral_references-data.R |only R/geocode_cadastral.R |only R/spanish.R | 41 +++++--- R/to_number.R | 13 +- R/to_words.R |only R/utils-pipe.R |only README.md | 197 +++++++++++++++++++++++++++++++--------- data/cadastral_references.RData |only man/cadastral_references.Rd |only man/figures |only man/geocode_cadastral.Rd |only man/pipe.Rd |only man/spanish.Rd | 65 ++++++------- man/to_number.Rd | 12 -- man/to_words.Rd |only tools/readme/logo.png |binary 19 files changed, 262 insertions(+), 131 deletions(-)
Title: Rank-Based Tests for General Factorial Designs
Description: The rankFD() function calculates the Wald-type statistic (WTS) and the ANOVA-type
statistic (ATS) for nonparametric factorial designs, e.g., for count, ordinal or score data
in a crossed design with an arbitrary number of factors.
Author: Frank Konietschke, Sarah Friedrich, Edgar Brunner, Markus Pauly
Maintainer: Frank Konietschke <frank.konietschke@charite.de>
Diff between rankFD versions 0.0.2 dated 2019-04-05 and 0.0.3 dated 2019-05-10
DESCRIPTION | 8 ++++---- MD5 | 7 ++++--- NAMESPACE | 1 + R/psr.R | 27 +++++++++++++++++++++++++++ man/psr.Rd |only 5 files changed, 36 insertions(+), 7 deletions(-)
Title: Integrative Lasso with Penalty Factors
Description: The core of the package is cvr2.ipflasso(), an extension of glmnet to be used when the (large) set of available predictors is partitioned into several modalities which potentially differ with respect to their information content in terms of prediction. For example, in biomedical applications patient outcome such as survival time or response to therapy may have to be predicted based on, say, mRNA data, miRNA data, methylation data, CNV data, clinical data, etc. The clinical predictors are on average often much more important for outcome prediction than the mRNA data. The ipflasso method takes this problem into account by using different penalty parameters for predictors from different modalities. The ratio between the different penalty parameters can be chosen by cross-validation.
Author: Anne-Laure Boulesteix, Mathias Fuchs
Maintainer: Anne-Laure Boulesteix <boulesteix@ibe.med.uni-muenchen.de>
Diff between ipflasso versions 0.1 dated 2015-11-24 and 0.2 dated 2019-05-10
DESCRIPTION | 8 +-- MD5 | 14 ++--- R/cvr.ipflasso.r | 2 R/ipflasso.predict.r | 106 +++++++++++++++++++++--------------------- man/cvr.glmnet.Rd | 121 +++++++++++++++++++++++------------------------- man/cvr.ipflasso.Rd | 5 - man/cvr2.ipflasso.Rd | 5 - man/ipflasso.predict.Rd | 106 +++++++++++++++++++++--------------------- 8 files changed, 182 insertions(+), 185 deletions(-)
More information about dplyr.teradata at CRAN
Permanent link
Title: Moving Sum Based Procedures for Changes in the Mean
Description: Implementations of MOSUM-based statistical procedures and algorithms for detecting multiple changes in the mean. This comprises the MOSUM procedure for estimating multiple mean changes from Eichinger and Kirch (2018) <doi:10.3150/16-BEJ887> and the multiscale algorithmic extensions from Cho and Kirch (2019+).
Author: Alexander Meier [aut],
Haeran Cho [aut, cre],
Claudia Kirch [aut]
Maintainer: Haeran Cho <haeran.cho@bristol.ac.uk>
Diff between mosum versions 1.2.0 dated 2018-06-22 and 1.2.1 dated 2019-05-10
mosum-1.2.0/mosum/man/exhaust_bic.Rd |only mosum-1.2.0/mosum/man/mosumCriticalValue.Rd |only mosum-1.2.1/mosum/DESCRIPTION | 15 mosum-1.2.1/mosum/MD5 | 79 +- mosum-1.2.1/mosum/NAMESPACE | 5 mosum-1.2.1/mosum/R/RcppExports.R | 19 mosum-1.2.1/mosum/R/bandwidth.R | 16 mosum-1.2.1/mosum/R/bootstrap.R | 52 - mosum-1.2.1/mosum/R/bottom_up.R | 60 +- mosum-1.2.1/mosum/R/local_prune.R | 550 +++++++++++-------- mosum-1.2.1/mosum/R/mosum.R | 183 ++++-- mosum-1.2.1/mosum/R/mosum_stat.R | 353 ++++++------ mosum-1.2.1/mosum/R/mosum_test.R | 92 +-- mosum-1.2.1/mosum/R/persp3D.R | 26 mosum-1.2.1/mosum/R/test_data.R | 70 +- mosum-1.2.1/mosum/inst/tests/testAbsoluteBandwidth.R | 47 - mosum-1.2.1/mosum/inst/tests/testMosumCpts.R | 12 mosum-1.2.1/mosum/inst/tests/testMosumStatistic.R | 20 mosum-1.2.1/mosum/inst/tests/testMultiscale.R | 2 mosum-1.2.1/mosum/inst/tests/testThresholds.R | 18 mosum-1.2.1/mosum/man/bandwidths.default.Rd | 16 mosum-1.2.1/mosum/man/confint.mosum.cpts.Rd | 24 mosum-1.2.1/mosum/man/confint.multiscale.cpts.Rd | 24 mosum-1.2.1/mosum/man/exhaust_sc.Rd |only mosum-1.2.1/mosum/man/local.env.Rd |only mosum-1.2.1/mosum/man/local.prune.Rd |only mosum-1.2.1/mosum/man/mosum.Rd | 74 +- mosum-1.2.1/mosum/man/mosum.criticalValue.Rd |only mosum-1.2.1/mosum/man/mosum.stat.Rd | 9 mosum-1.2.1/mosum/man/multiscale.bottomUp.Rd | 54 + mosum-1.2.1/mosum/man/multiscale.grid.Rd | 2 mosum-1.2.1/mosum/man/multiscale.localPrune.Rd | 70 +- mosum-1.2.1/mosum/man/persp3D.multiscaleMosum.Rd | 22 mosum-1.2.1/mosum/man/plot.mosum.cpts.Rd | 35 - mosum-1.2.1/mosum/man/plot.multiscale.cpts.Rd | 52 + mosum-1.2.1/mosum/man/print.mosum.cpts.Rd | 5 mosum-1.2.1/mosum/man/print.multiscale.cpts.Rd | 5 mosum-1.2.1/mosum/man/setBitNumber.Rd |only mosum-1.2.1/mosum/man/summary.mosum.cpts.Rd | 9 mosum-1.2.1/mosum/man/summary.multiscale.cpts.Rd | 5 mosum-1.2.1/mosum/man/testData.Rd | 43 + mosum-1.2.1/mosum/man/testSignal.Rd | 25 mosum-1.2.1/mosum/src/RcppExports.cpp | 22 mosum-1.2.1/mosum/src/exhaust_bic.cpp | 206 +++++-- 44 files changed, 1397 insertions(+), 924 deletions(-)
Title: Sustainable Transport Planning
Description: Tools for transport planning with an emphasis on spatial transport
data and non-motorized modes. Enables common transport planning tasks including:
downloading and cleaning transport datasets; creating geographic "desire lines"
from origin-destination (OD) data; route assignment, locally and via
interfaces to routing services such as <http://cyclestreets.net/>;
calculation of route segment attributes such as bearing and aggregate flow;
and 'travel watershed' analysis.
See Lovelace and Ellison (2018) <doi:10.32614/RJ-2018-053>.
Author: Robin Lovelace [aut, cre] (<https://orcid.org/0000-0001-5679-6536>),
Richard Ellison [aut],
Malcolm Morgan [aut] (<https://orcid.org/0000-0001-5679-6536>),
Barry Rowlingson [ctb] (Author of overline),
Nick Bearman [ctb] (Co-author of gclip),
Nikolai Berkoff [ctb] (Co-author of line2route),
Scott Chamberlin [rev] (Scott reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/10),
Mark Padgham [ctb]
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between stplanr versions 0.2.8 dated 2019-03-22 and 0.2.9 dated 2019-05-10
DESCRIPTION | 15 MD5 | 61 +-- NAMESPACE | 3 NEWS.md | 15 R/SpatialLinesNetwork.R | 92 ++--- R/od-funs.R | 58 +++ R/overline.R | 336 ++++++++++-------- R/route.R | 33 - R/route_local.R | 27 - R/stplanr-package.R | 3 README.md | 177 ++------- build/vignette.rds |binary inst/doc/stplanr-paper.html | 526 ++++++++--------------------- inst/doc/stplanr.html | 378 ++++---------------- man/SpatialLinesNetwork.Rd | 26 - man/figures/README-plot1-1.png |binary man/figures/README-rnet-1.png |binary man/find_network_nodes.Rd | 4 man/od_aggregate_from.Rd |only man/od_aggregate_to.Rd |only man/overline.Rd | 5 man/overline2.Rd | 42 +- man/overline_intersection.Rd |only man/plot-SpatialLinesNetwork-ANY-method.Rd | 6 man/plot-sfNetwork-ANY-method.Rd | 4 man/route_dodgr.Rd | 17 man/route_local.Rd | 23 - man/sln2points.Rd | 6 man/sum_network_links.Rd | 16 man/sum_network_routes.Rd | 10 man/summary-SpatialLinesNetwork-method.Rd | 4 man/summary-sfNetwork-method.Rd | 4 man/weightfield.Rd | 6 33 files changed, 768 insertions(+), 1129 deletions(-)
Title: The Essential Histogram
Description: Provide an optimal histogram, in the sense of probability density estimation and features detection, by means of multiscale variational inference. In other words, the resulting histogram servers as an optimal density estimator, and meanwhile recovers the features, such as increases or modes, with both false positive and false negative controls. Moreover, it provides a parsimonious representation in terms of the number of blocks, which simplifies data interpretation. The only assumption for the method is that data points are independent and identically distributed, so it applies to fairly general situations, including continuous distributions, discrete distributions, and mixtures of both. For details see Li, Munk, Sieling and Walther (2016) <arXiv:1612.07216>.
Author: Housen Li [aut, cre],
Hannes Sieling [aut]
Maintainer: Housen Li <housen.li@outlook.com>
Diff between essHist versions 1.2.1 dated 2019-04-08 and 1.2.2 dated 2019-05-10
essHist-1.2.1/essHist/inst/extdata/simn1e4.rds |only essHist-1.2.2/essHist/ChangeLog | 4 essHist-1.2.2/essHist/DESCRIPTION | 8 - essHist-1.2.2/essHist/MD5 | 33 ++--- essHist-1.2.2/essHist/R/RcppExports.R | 4 essHist-1.2.2/essHist/R/checkHistogram.R | 12 + essHist-1.2.2/essHist/R/essHistogram.R | 13 + essHist-1.2.2/essHist/R/intv.R | 2 essHist-1.2.2/essHist/R/msQuantile.R | 57 +++++--- essHist-1.2.2/essHist/build/partial.rdb |binary essHist-1.2.2/essHist/inst/extdata/simn1e4c.rds |only essHist-1.2.2/essHist/inst/extdata/simn1e4g.rds |only essHist-1.2.2/essHist/man/checkHistogram.Rd | 13 + essHist-1.2.2/essHist/man/essHist-package.Rd | 4 essHist-1.2.2/essHist/man/essHistogram.Rd | 10 + essHist-1.2.2/essHist/man/msQuantile.Rd | 12 + essHist-1.2.2/essHist/src/RcppExports.cpp | 9 - essHist-1.2.2/essHist/src/multiscaleQuantile.cpp | 111 ++++++++--------- essHist-1.2.2/essHist/tests/testthat/test-msQuantile.R | 6 19 files changed, 181 insertions(+), 117 deletions(-)
Title: Robust Regression Functions
Description: Linear regression functions using Huber and bisquare psi functions. Optimal weights are calculated using IRLS algorithm.
Author: Ian M. Johnson <ijca2013@gmail.com>
Maintainer: Ian M. Johnson <ijca2013@gmail.com>
Diff between robustreg versions 0.1-10 dated 2017-04-27 and 0.1-11 dated 2019-05-10
robustreg-0.1-10/robustreg/src/init.c |only robustreg-0.1-11/robustreg/DESCRIPTION | 16 ++++++++-------- robustreg-0.1-11/robustreg/MD5 | 21 ++++++++++----------- robustreg-0.1-11/robustreg/R/RcppExports.R | 10 +++++----- robustreg-0.1-11/robustreg/man/fit_rcpp.Rd | 10 +++++++--- robustreg-0.1-11/robustreg/man/mad_rcpp.Rd | 5 ++--- robustreg-0.1-11/robustreg/man/median_rcpp.Rd | 5 ++--- robustreg-0.1-11/robustreg/man/psiBS_rcpp.Rd | 1 + robustreg-0.1-11/robustreg/man/psiHuber_rcpp.Rd | 1 + robustreg-0.1-11/robustreg/man/robustRegBS.Rd | 2 +- robustreg-0.1-11/robustreg/man/robustRegH.Rd | 2 +- robustreg-0.1-11/robustreg/src/RcppExports.cpp | 24 +++++++++++++++++++----- 12 files changed, 57 insertions(+), 40 deletions(-)
Title: Set of Functions to Use in Survival Analysis and in Data Science
Description: Collection of functions to improve work-flow in survival analysis and data science.
The package features include: the generation of balanced datasets, live retrieval of
protein coding genes from two public databases, generation of random
matrix based on covariance matrix, cache function to store function results.
This work was supported by two grants from the Portuguese Foundation for Science
and technology, and the EU Commission under SOUND project.
Author: André Veríssimo [aut, cre],
Susana Vinga [aut]
Maintainer: André Veríssimo <andre.verissimo@tecnico.ulisboa.pt>
Diff between loose.rock versions 1.0.11 dated 2019-05-06 and 1.0.12 dated 2019-05-10
DESCRIPTION | 13 ++++---- MD5 | 6 +-- R/coding.genes.R | 57 +++++++++++++++++++++++++------------ inst/doc/Overview.html | 74 ++++++++++++++++++++++++------------------------- 4 files changed, 86 insertions(+), 64 deletions(-)
Title: A Collection of Graphon Estimation Methods
Description: Provides a not-so-comprehensive list of methods for estimating graphon,
a symmetric measurable function, from a single or multiple of observed networks.
For a detailed introduction on graphon and popular estimation techniques,
see the paper by Orbanz, P. and Roy, D.M.(2014) <doi:10.1109/TPAMI.2014.2334607>.
It also contains several auxiliary functions for generating sample networks
using various network models and graphons.
Author: Kisung You [aut, cre] (<https://orcid.org/0000-0002-8584-459X>)
Maintainer: Kisung You <ksyou496@gmail.com>
Diff between graphon versions 0.3.1 dated 2019-02-03 and 0.3.2 dated 2019-05-10
DESCRIPTION | 10 +++++----- MD5 | 21 +++++++++++---------- NEWS.md | 7 ++++++- R/auxiliary.R | 27 ++++++++------------------- R/est.LG.R | 8 ++++---- R/est.USVT.R | 21 ++++++++++----------- R/gmodel.P.R | 53 +++++++++++++++++++++++++++++++++++------------------ R/gmodel.block.R | 8 +++++--- R/init.R |only build/partial.rdb |binary man/est.LG.Rd | 8 ++++---- man/gmodel.P.Rd | 2 +- 12 files changed, 89 insertions(+), 76 deletions(-)
Title: Embedded Conic Solver in R
Description: R interface to the Embedded COnic Solver (ECOS), an efficient
and robust C library for convex problems. Conic and equality
constraints can be specified in addition to integer and
boolean variable constraints for mixed-integer problems. This
R interface is inspired by the python interface and has
similar calling conventions.
Author: Anqi Fu [aut],
Balasubramanian Narasimhan [aut, cre],
Florian Schwendinger [ctb]
Maintainer: Balasubramanian Narasimhan <naras@stat.Stanford.EDU>
Diff between ECOSolveR versions 0.5.1 dated 2019-05-07 and 0.5.2 dated 2019-05-10
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 6 ++++++ inst/doc/examples.html | 4 ++-- src/Makevars | 2 +- 5 files changed, 17 insertions(+), 11 deletions(-)
Title: Minimization Tool for Pharmacokinetic-Pharmacodynamic Data
Analysis
Description: This is a set of minimization tools (maximum likelihood estimation and least square fitting) to solve examples in the Johan Gabrielsson and Dan Weiner's book "Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications" 5th ed. (ISBN:9198299107). Examples include linear and nonlinear compartmental model, turn-over model, single or multiple dosing bolus/infusion/oral models, allometry, toxicokinetics, reversible metabolism, in-vitro/in-vivo extrapolation, enterohepatic circulation, metabolite modeling, Emax model, inhibitory model, tolerance model, oscillating response model, enantiomer interaction model, effect compartment model, drug-drug interaction model, receptor occupancy model, and rebound phenomena model.
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between wnl versions 0.4.1 dated 2018-06-14 and 0.5.0 dated 2019-05-10
DESCRIPTION | 6 ++-- MD5 | 29 +++++++++++++------ R/Comp1.R |only R/ExpandDH.R |only R/Objs.R | 15 ++++++++-- R/SolComp2.R |only R/SolComp3.R |only R/nComp.R |only R/nlr.R | 71 ++++++++++++++++++++++++++++++++++++++---------- R/sysdata.rda |binary inst/NEWS.Rd | 12 ++++++++ inst/doc/wnl-manual.pdf |binary man/Comp1.Rd |only man/DAT.Rd |only man/ExpandDH.Rd |only man/Objs.Rd | 1 man/SolComp2.Rd |only man/SolComp3.Rd |only man/nComp.Rd |only man/nlr.Rd | 2 - man/wnl5.Rd | 2 - 21 files changed, 107 insertions(+), 31 deletions(-)
Title: Water Cloud Model (WCM) for the Simulation of Leaf Area Index
(LAI) and Soil Moisture (SM) in Satellite Earth Observation
Data
Description: Retrieves the leaf area index (LAI) and soil moisture (SM) from synthetic aperture radar(SAR) for earth observation data using water cloud model (WCM) model inversion. The WCM algorithm attributed to Pervot et al. (1993)<doi:10.1016/0034-4257(93)90053-Z>.
Author: Ujjwal Singh <ujjwalrsmt@gmail.com>
Maintainer: Ujjwal Singh <ujjwalrsmt@gmail.com>
Diff between WCM versions 0.1.0 dated 2019-05-02 and 0.2.0 dated 2019-05-10
WCM-0.1.0/WCM/inst/extdata |only WCM-0.2.0/WCM/DESCRIPTION | 10 +++++----- WCM-0.2.0/WCM/MD5 | 18 ++++++++---------- WCM-0.2.0/WCM/R/lai_inversion_lut.R | 6 +++--- WCM-0.2.0/WCM/R/sm_inversion_lut.R | 6 +++--- WCM-0.2.0/WCM/R/wcm_sim.R | 14 +++++++------- WCM-0.2.0/WCM/inst/doc/introduction.html | 4 ++-- WCM-0.2.0/WCM/man/lai_inversion_lut.Rd | 6 +++--- WCM-0.2.0/WCM/man/sm_inversion_lut.Rd | 6 +++--- WCM-0.2.0/WCM/man/wcm_sim.Rd | 14 +++++++------- 10 files changed, 41 insertions(+), 43 deletions(-)
Title: Predictive Data Analysis System
Description: Perform a supervised data analysis on a database through a 'shiny' graphical interface. It includes methods such as K-Nearest Neighbors, Decision Trees, ADA Boosting, Extreme Gradient Boosting, Random Forest, Neural Networks, Deep Learning, Support Vector Machines and Bayesian Methods.
Author: Oldemar Rodriguez R. with contributions from Diego Jimenez A. and Andres Navarro D.
Maintainer: Oldemar Rodriguez <oldemar.rodriguez@ucr.ac.cr>
Diff between predictoR versions 1.0.4 dated 2019-03-03 and 1.0.9 dated 2019-05-10
DESCRIPTION | 20 MD5 | 22 NAMESPACE | 2 R/init_predictor.R | 17 inst/application/global.R | 205 +++++- inst/application/server.R | 994 ++++++++++++++++++++++---------- inst/application/ui.R | 363 ++++++++--- inst/application/utils.R | 482 +++++++++++++++ inst/application/www/diccionario.csv | 13 inst/application/www/myscript.js | 167 +++-- inst/application/www/style_promidat.css | 7 inst/application/www/translation.bin |binary 12 files changed, 1801 insertions(+), 491 deletions(-)
Title: Tools for Making and Combining Functions
Description: Provides a suite of function-building tools centered around a
(forward) composition operator, %>>>%, which extends the semantics of the
'magrittr' %>% operator and supports 'tidyverse' quasiquotation. It enables
you to construct composite functions that can be inspected and transformed as
list-like objects. In conjunction with %>>>%, a compact function constructor,
fn(), and a function that performs partial application, partial(), are also
provided. Both support quasiquotation.
Author: Eugene Ha [aut, cre]
Maintainer: Eugene Ha <eha@posteo.de>
Diff between gestalt versions 0.1.6 dated 2019-02-10 and 0.1.7 dated 2019-05-10
gestalt-0.1.6/gestalt/NEWS |only gestalt-0.1.7/gestalt/DESCRIPTION | 6 - gestalt-0.1.7/gestalt/MD5 | 36 +++--- gestalt-0.1.7/gestalt/NEWS.md |only gestalt-0.1.7/gestalt/R/closure.R | 118 +++++++++----------- gestalt-0.1.7/gestalt/R/compose.R | 78 ++++++------- gestalt-0.1.7/gestalt/R/constant.R | 4 gestalt-0.1.7/gestalt/R/context.R | 23 ++- gestalt-0.1.7/gestalt/R/fn.R | 33 ++--- gestalt-0.1.7/gestalt/R/partial.R | 10 - gestalt-0.1.7/gestalt/R/posure.R | 10 + gestalt-0.1.7/gestalt/build/vignette.rds |binary gestalt-0.1.7/gestalt/inst/doc/gestalt.html | 10 - gestalt-0.1.7/gestalt/man/compose.Rd | 75 ++++++------ gestalt-0.1.7/gestalt/man/constant.Rd | 4 gestalt-0.1.7/gestalt/man/context.Rd | 23 ++- gestalt-0.1.7/gestalt/man/fn.Rd | 31 ++--- gestalt-0.1.7/gestalt/man/partial.Rd | 10 - gestalt-0.1.7/gestalt/man/posure.Rd | 10 + gestalt-0.1.7/gestalt/tests/testthat/test-compose.R | 10 + 20 files changed, 253 insertions(+), 238 deletions(-)
Title: Authentication Services for Azure Active Directory
Description: Provides Azure Active Directory (AAD) authentication functionality for R users of Microsoft's 'Azure' cloud <https://azure.microsoft.com/>. Use this package to obtain 'OAuth' 2.0 tokens for services including Azure Resource Manager, Azure Storage and others. It supports both AAD v1.0 and v2.0, as well as multiple authentication methods, including device code and resource owner grant. Tokens are cached in a user-specific directory obtained using the 'rappdirs' package. The interface is based on the 'OAuth' framework in the 'httr' package, but customised and streamlined for Azure.
Author: Hong Ooi [aut, cre],
httr development team [ctb] (Original OAuth listener code),
Scott Holden [ctb] (Advice on AAD authentication),
Chris Stone [ctb] (Advice on AAD authentication),
Microsoft [cph]
Maintainer: Hong Ooi <hongooi@microsoft.com>
Diff between AzureAuth versions 1.0.2 dated 2019-04-23 and 1.1.0 dated 2019-05-10
DESCRIPTION | 8 +-- MD5 | 32 ++++++++------- NAMESPACE | 1 NEWS.md | 8 +++ R/AzureToken.R | 58 +++++++++++++++++++--------- R/cert_creds.R |only R/initfuncs.R | 12 ++++- R/token.R | 80 ++++++++++++++++++++++++++++++--------- R/utils.R | 56 +++++++++++++++------------ README.md | 27 +++++++++++-- inst/doc/token.Rmd | 27 +++++++++++-- inst/doc/token.html | 45 +++++++++++++++------ man/cert_assertion.Rd |only man/decode_jwt.Rd | 2 man/get_azure_token.Rd | 65 ++++++++++++++++++++++++++----- tests/testthat/test01_v1_token.R | 51 ++++++++++++++++++++++-- tests/testthat/test02_v2_token.R | 55 ++++++++++++++++++++++++-- vignettes/token.Rmd | 27 +++++++++++-- 18 files changed, 429 insertions(+), 125 deletions(-)
Title: R Client for the Microsoft Cognitive Services 'Text-to-Speech'
REST API
Description: R Client for the Microsoft Cognitive Services
'Text-to-Speech' REST API, including voice synthesis. A valid account
must be registered at the Microsoft Cognitive Services website
<https://www.microsoft.com/cognitive-services/> in order to
obtain a (free) API key. Without an API key, this package will not
work properly.
Author: John Muschelli [aut, cre] (<https://orcid.org/0000-0001-6469-1750>)
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between mscstts versions 0.5.1 dated 2019-04-23 and 0.5.2 dated 2019-05-10
DESCRIPTION | 6 +++--- MD5 | 4 ++-- README.md | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)