Title: Tools to Handle Taxonomic Lists
Description: Some tools to work with taxonomic name lists.
Author: Vijay Barve [aut, cre] (<https://orcid.org/0000-0002-4852-2567>)
Maintainer: Vijay Barve <vijay.barve@gmail.com>
Diff between taxotools versions 0.0.23 dated 2019-04-17 and 0.0.29 dated 2019-05-13
DESCRIPTION | 8 +++--- MD5 | 58 ++++++++++++++++++++++++--------------------- NAMESPACE | 9 ++++-- NEWS | 6 ++++ R/GetWikiSyn.R | 2 - R/cast_canonical.R |only R/get_itis_syn.R | 3 +- R/guess_taxo_level.R | 3 ++ R/list_higher_taxo.R | 6 ++-- R/list_itis_syn.R | 3 +- R/list_wiki_syn.R | 6 +++- R/make_canonical.R | 3 +- R/match_lists.R | 8 +++--- R/melt_canonical.R |only R/taxotools.R | 6 +++- man/BuildCSList.Rd | 3 +- man/CheckScientificName.Rd | 3 +- man/ExpandSyn.Rd | 3 +- man/GetWikiSyn.Rd | 3 +- man/GuessTaxoLevel.Rd | 3 +- man/MakeCanonical.Rd | 3 +- man/MatchLists.Rd | 3 +- man/cast_canonical.Rd |only man/check_scientific.Rd | 6 +++- man/expand_name.Rd | 6 +++- man/get_itis_syn.Rd | 3 +- man/guess_taxo_level.Rd | 7 +++-- man/list_higher_taxo.Rd | 9 ++++-- man/list_itis_syn.Rd | 3 +- man/make_canonical.Rd | 9 ++++++ man/melt_canonical.Rd |only man/taxotools.Rd | 6 +++- 32 files changed, 121 insertions(+), 70 deletions(-)
Title: Language Support for 'koRpus' Package: English
Description: Adds support for the English language to the 'koRpus' package. To ask for help, report bugs, suggest feature improvements, or discuss the global development of the
package, please consider subscribing to the koRpus-dev mailing list (<http://korpusml.reaktanz.de>).
Author: Meik Michalke [aut, cre],
Elen Le Foll [ctb] (BNC tagset)
Maintainer: Meik Michalke <meik.michalke@hhu.de>
Diff between koRpus.lang.en versions 0.1-2 dated 2018-03-21 and 0.1-3 dated 2019-05-13
ChangeLog | 9 ++ DESCRIPTION | 26 +++---- MD5 | 21 +++--- NAMESPACE | 1 R/koRpus.lang.en-package.R | 25 +++---- R/lang.support-en.R | 145 ++++++++++++++++++++++++++++++++++-------- README.md | 11 ++- build |only inst/CITATION | 8 +- inst/NEWS.Rd | 5 - man/koRpus.lang.en-package.Rd | 28 ++++---- man/lang.support.en.Rd | 18 ++++- 12 files changed, 210 insertions(+), 87 deletions(-)
More information about koRpus.lang.en at CRAN
Permanent link
Title: The One-Way Heteroscedastic ANOVA Tests
Description: Contains several one-way heteroscedastic ANOVA tests such as Alexander-Govern test by Alexandern and Govern (1994) <doi:10.2307/1165140>, Alvandi et al. Generalized F test by Alvandi et al. (2012) <doi:10.1080/03610926.2011.573160>, Approximate F test by Asiribo and Gurland (1990) <doi:10.1080/03610929008830427>, Box F test by Box (1954) <doi:10.1214/aoms/1177728786>, Brown-Forsythe test by Brown and Forsythe (1974) <do:10.2307/1267501>, B2 test by Ozdemir and Kurt (2006) <http://sjam.selcuk.edu.tr/sjam/article/view/174>, Cochran F test by Cochran (1937) <https://www.jstor.org/stable/pdf/2984123.pdf>, Fiducial Approach test by Li et al. (2011) <doi:10.1016/j.csda.2010.12.009>, Generalized F test by Weerahandi (1995) <doi:10.2307/2532947>, Johansen F test by Johansen (1980) <doi:10.1093/biomet/67.1.85>, Modified Brown-Forsythe test by Mehrotra (1997) <doi:10.1080/03610919708813431>, Modified Welch test by Hartung et al.(2002) <doi:10.1007/s00362-002-0097-8>, One-Stage test by Chen and Chen (1998) <doi:10.1080/03610919808813501>, One-Stage Range test by Chen and Chen (2000) <doi:10.1080/01966324.2000.10737505>, Parametric Bootstrap test by Krishnamoorhty et al.(2007) <doi:10.1016/j.csda.2006.09.039>, Permutation F test by Berry and Mielke (2002) <doi:10.2466/pr0.2002.90.2.495>, Scott-Smith test by Scott and Smith (1971) <doi:10.2307/2346757>, Welch test by Welch(1951) <doi:10.2307/2332579>, and Welch-Aspin test by Aspin (1948) <doi:10.1093/biomet/35.1-2.88>. These tests are used to test the equality of group means under unequal variance. Furthermore, a modified version of Generalized F-test is improved to test the equality of non-normal group means under unequal variances and a revised version of Generalized F-test is given to test the equality of non-normal group means caused by skewness.
Author: Mustafa CAVUS, Berna YAZICI
Maintainer: Mustafa CAVUS <mustafacavus@eskisehir.edu.tr>
Diff between doex versions 1.0.0 dated 2018-07-05 and 1.1 dated 2019-05-13
DESCRIPTION | 14 - MD5 | 50 +++--- R/AlexanderGovern.R | 45 +++-- R/AlvandiGF.R | 47 +++--- R/BoxF.R | 26 +-- R/BrownForsythe.R | 22 +- R/Bsquare.R | 24 +-- R/CochranF.R | 31 ++-- R/FiducialApproach.R | 21 +- R/Johansen.R | 41 ++--- R/MGF.R | 347 +++------------------------------------------- R/ParametricBootstrap.R | 23 +-- R/RGF.R |only R/ScottSmith.R | 19 +- R/Welch.R | 25 +-- R/WelchAspin.R | 26 +-- R/approximateF.R | 37 ++-- R/generalizedF.R | 56 +++---- R/modWelch.R | 45 +++-- R/modifiedBrownForsythe.R | 38 ++--- R/onestage.R | 41 ++--- R/onestagerange.R | 39 ++--- R/permutationF.R | 15 + man/MGF.Rd | 5 man/RGF.Rd |only man/generalizedF.Rd | 1 man/hybridata.Rd | 1 27 files changed, 397 insertions(+), 642 deletions(-)
Title: Formula-Driven Table Generation
Description: Computes and displays complex tables of summary statistics.
Output may be in LaTeX, HTML, plain text, or an R
matrix for further processing.
Author: Duncan Murdoch
Maintainer: Duncan Murdoch <murdoch@stats.uwo.ca>
Diff between tables versions 0.8.7 dated 2018-11-11 and 0.8.8 dated 2019-05-13
DESCRIPTION | 6 MD5 | 16 - R/html.tabular.R | 2 build/vignette.rds |binary inst/NEWS | 4 inst/doc/HTML.html | 632 +++++++++++++++++++++++++++++++-------------- inst/doc/tables.pdf |binary man/as.tabular.Rd | 4 vignettes/tables.Rout.save | 60 ++-- 9 files changed, 483 insertions(+), 241 deletions(-)
Title: Multivariate Imputation by Chained Equations
Description: Multiple imputation using Fully Conditional Specification (FCS)
implemented by the MICE algorithm as described in Van Buuren and
Groothuis-Oudshoorn (2011) <doi:10.18637/jss.v045.i03>. Each variable has
its own imputation model. Built-in imputation models are provided for
continuous data (predictive mean matching, normal), binary data (logistic
regression), unordered categorical data (polytomous logistic regression)
and ordered categorical data (proportional odds). MICE can also impute
continuous two-level data (normal model, pan, second-level variables).
Passive imputation can be used to maintain consistency between variables.
Various diagnostic plots are available to inspect the quality of the
imputations.
Author: Stef van Buuren [aut, cre],
Karin Groothuis-Oudshoorn [aut],
Alexander Robitzsch [ctb],
Gerko Vink [ctb],
Lisa Doove [ctb],
Shahab Jolani [ctb],
Rianne Schouten [ctb],
Philipp Gaffert [ctb],
Florian Meinfelder [ctb],
Bernie Gray [ctb]
Maintainer: Stef van Buuren <stef.vanbuuren@tno.nl>
Diff between mice versions 3.4.0 dated 2019-03-07 and 3.5.0 dated 2019-05-13
DESCRIPTION | 9 +++++---- MD5 | 14 +++++++------- NEWS.md | 25 +++++++++---------------- R/as.R | 4 +++- R/mipo.R | 22 ++++++---------------- R/sampler.R | 2 +- man/as.mids.Rd | 5 +++++ tests/testthat/test-mice.R | 28 ++++++++++++++-------------- 8 files changed, 50 insertions(+), 59 deletions(-)
Title: ILO Open Data via Ilostat Bulk Download Facility or SDMX Web
Service
Description: Tools to download data from the ilostat database
<http://www.ilo.org/ilostat> together with search and
manipulation utilities.
Author: ILO Department of Statistics [cph, fnd],
David Bescond [aut, cre] (<https://orcid.org/0000-0002-1642-0304>),
Rosina Gammarano [ctb],
Mabelin Villarreal-Fuentes [ctb]
Maintainer: David Bescond <bescond@ilo.org>
Diff between Rilostat versions 0.2.1 dated 2018-02-13 and 1.0.0 dated 2019-05-13
Rilostat-0.2.1/Rilostat/NEWS |only Rilostat-1.0.0/Rilostat/DESCRIPTION | 34 +-- Rilostat-1.0.0/Rilostat/MD5 | 46 ++-- Rilostat-1.0.0/Rilostat/NAMESPACE | 14 - Rilostat-1.0.0/Rilostat/R/clean_ilostat_cache.R | 25 +- Rilostat-1.0.0/Rilostat/R/get_ilostat.R | 58 ++--- Rilostat-1.0.0/Rilostat/R/get_ilostat_dic.R | 8 Rilostat-1.0.0/Rilostat/R/get_ilostat_toc.R | 46 ++-- Rilostat-1.0.0/Rilostat/R/ilostat.R | 26 -- Rilostat-1.0.0/Rilostat/R/label_ilostat.R | 18 - Rilostat-1.0.0/Rilostat/R/sdmx_ilostat.R | 234 +++++++++++---------- Rilostat-1.0.0/Rilostat/R/utils.R | 2 Rilostat-1.0.0/Rilostat/README.md | 56 +---- Rilostat-1.0.0/Rilostat/build |only Rilostat-1.0.0/Rilostat/inst |only Rilostat-1.0.0/Rilostat/man/clean_ilostat_cache.Rd | 2 Rilostat-1.0.0/Rilostat/man/get_ilostat.Rd | 40 +-- Rilostat-1.0.0/Rilostat/man/get_ilostat_dic.Rd | 8 Rilostat-1.0.0/Rilostat/man/get_ilostat_toc.Rd | 39 +-- Rilostat-1.0.0/Rilostat/man/ilostat.Rd | 9 Rilostat-1.0.0/Rilostat/man/label_ilostat.Rd | 16 - Rilostat-1.0.0/Rilostat/man/sdmx_ilostat.Rd | 83 +++---- Rilostat-1.0.0/Rilostat/vignettes |only 23 files changed, 395 insertions(+), 369 deletions(-)
Title: Find Optimal Sampling Locations Based on Spatial Covariate(s)
Description: Create sampling designs using the surface reconstruction algorithm.
Original method by: Olsson, D. 2002. A method to optimize soil sampling from
ancillary data. Poster presenterad at: NJF seminar no. 336,
Implementation of Precision Farming in Practical Agriculture, 10-12
June 2002, Skara, Sweden.
Author: Kristin Piikki & Mats Söderström
Maintainer: Kristin Piikki <kristin.piikki@slu.se>
Diff between SurfaceTortoise versions 1.0.0 dated 2019-05-07 and 1.0.1 dated 2019-05-13
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/tortoise.R | 6 +++--- 3 files changed, 8 insertions(+), 8 deletions(-)
More information about SurfaceTortoise at CRAN
Permanent link
Title: Disciplined Convex Optimization
Description: An object-oriented modeling language for disciplined convex
programming (DCP). It allows the user to formulate convex optimization problems
in a natural way following mathematical convention and DCP rules. The system
analyzes the problem, verifies its convexity, converts it into a canonical form,
and hands it off to an appropriate solver to obtain the solution.
Author: Anqi Fu [aut, cre],
Balasubramanian Narasimhan [aut],
Steven Diamond [aut],
John Miller [aut],
Stephen Boyd [ctb],
Paul Kunsberg Rosenfield [ctb]
Maintainer: Anqi Fu <anqif@stanford.edu>
Diff between CVXR versions 0.99-4 dated 2019-03-13 and 0.99-5 dated 2019-05-13
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS.md | 7 +++++++ R/atoms.R | 8 ++++---- R/solver.R | 4 ++-- build/vignette.rds |binary inst/doc/cvxr_intro.html | 22 +++++++++++++++------- man/ECOS-class.Rd | 2 +- man/ECOS_BB-class.Rd | 2 +- man/LogSumExp-class.Rd | 4 ++-- src/RcppExports.cpp | 1 + 11 files changed, 47 insertions(+), 31 deletions(-)
Title: Aster Models
Description: Aster models are exponential family regression models for life
history analysis. They are like generalized linear models except that
elements of the response vector can have different families (e. g.,
some Bernoulli, some Poisson, some zero-truncated Poisson, some normal)
and can be dependent, the dependence indicated by a graphical structure.
Discrete time survival analysis, zero-inflated Poisson regression, and
generalized linear models that are exponential family (e. g., logistic
regression and Poisson regression with log link) are special cases.
Main use is for data in which there is survival over discrete time periods
and there is additional data about what happens conditional on survival
(e. g., number of offspring). Uses the exponential family canonical
parameterization (aster transform of usual parameterization).
There are also random effects versions of these models.
Author: Charles J. Geyer <charlie@stat.umn.edu>
Maintainer: Charles J. Geyer <charlie@stat.umn.edu>
Diff between aster versions 1.0-2 dated 2018-07-06 and 1.0-3 dated 2019-05-13
DESCRIPTION | 8 +++---- MD5 | 46 ++++++++++++++++++++++----------------------- build/vignette.rds |binary inst/doc/linkingTo.pdf |binary inst/doc/re.pdf |binary inst/doc/trunc.pdf |binary inst/doc/tutor.pdf |binary tests/aster.R | 4 +++ tests/aster.Rout.save | 10 ++++++--- tests/aster.rda |binary tests/famnzp.R | 6 +++-- tests/famnzp.Rout.save | 15 +++++++++----- tests/formula.R | 3 ++ tests/formula.Rout.save | 9 +++++--- tests/gradmat.R | 3 ++ tests/gradmat.Rout.save | 9 +++++--- tests/mlogl-cond.R | 3 ++ tests/mlogl-cond.Rout.save | 9 +++++--- tests/mlogl-unco.R | 3 ++ tests/mlogl-unco.Rout.save | 12 ++++++++--- tests/predict.R | 3 ++ tests/predict.Rout.save | 9 +++++--- tests/raster.R | 3 ++ tests/raster.Rout.save | 12 ++++++++--- 24 files changed, 112 insertions(+), 55 deletions(-)
Title: Tools for Simplifying the Population and Querying of SQLite
Databases
Description: Provides objects and accompanying methods which facilitates populating and querying SQLite databases.
Author: Daniel Bottomly [cre, aut],
Shannon McWeeney [aut],
Beth Wilmot [aut]
Maintainer: Daniel Bottomly <bottomly@ohsu.edu>
Diff between poplite versions 0.99.21 dated 2019-02-18 and 0.99.23 dated 2019-05-13
DESCRIPTION | 8 - MD5 | 15 +- README.md |only data/clinical.rda |binary inst/doc/poplite.R | 226 ++++++++++++++++++------------------------ inst/doc/poplite.Rnw | 34 +----- inst/doc/poplite.pdf |binary tests/testthat/test-poplite.R | 120 ++++++++++++++++++++++ vignettes/poplite.Rnw | 34 +----- 9 files changed, 245 insertions(+), 192 deletions(-)
Title: Diffs for R Objects
Description: Generate a colorized diff of two R objects for an intuitive
visualization of their differences.
Author: Brodie Gaslam [aut, cre],
Michael B. Allen [ctb, cph] (Original C implementation of Myers Diff
Algorithm)
Maintainer: Brodie Gaslam <brodie.gaslam@yahoo.com>
Diff between diffobj versions 0.2.2 dated 2019-03-15 and 0.2.3 dated 2019-05-13
DESCRIPTION | 8 - MD5 | 87 ++++++++------- NAMESPACE | 1 NEWS.md | 24 ++++ R/capt.R | 2 R/core.R | 85 +++++++-------- R/diff.R | 93 ++++++++++------ R/misc.R | 54 ++++++--- R/myerssimple.R | 3 R/pager.R | 1 R/rdiff.R | 5 R/s4.R | 125 +++++++++++----------- R/text.R | 9 + R/tochar.R | 17 +-- R/trim.R | 10 + R/word.R | 171 ++++++++++++++++++------------- README.md | 1 build/vignette.rds |binary inst/doc/diffobj.html | 29 ++++- inst/doc/embed.html | 29 ++++- inst/doc/metacomp.html | 31 +++++ man/diffChr.Rd | 61 ++++++----- man/diffCsv.Rd | 61 ++++++----- man/diffDeparse.Rd | 61 ++++++----- man/diffFile.Rd | 61 ++++++----- man/diffPrint.Rd | 95 ++++++++++------- man/diffStr.Rd | 61 ++++++----- man/ses.Rd | 5 tests/run.R | 68 ++++++------ tests/testthat/helper/diffChr/500.txt |only tests/testthat/helper/diffPrint/100.txt |only tests/testthat/helper/diffPrint/150.txt |only tests/testthat/helper/diffPrint/175.txt |only tests/testthat/helper/diffPrint/200.txt |only tests/testthat/helper/diffPrint/3100.rds |binary tests/testthat/helper/diffPrint/3200.rds |binary tests/testthat/testthat.atomic.R | 4 tests/testthat/testthat.context.R | 4 tests/testthat/testthat.diffChr.R | 45 ++++++++ tests/testthat/testthat.diffPrint.R | 46 ++++++++ tests/testthat/testthat.file.R | 18 +++ tests/testthat/testthat.misc.R | 17 ++- tests/testthat/testthat.pager.R | 11 + tests/testthat/testthat.s4.R | 42 ++++--- tests/testthat/testthat.ses.R | 4 tests/testthat/testthat.style.R | 11 + tests/testthat/testthat.text.R | 7 + 47 files changed, 947 insertions(+), 520 deletions(-)
Title: Normalizing Transformation Functions
Description: Estimate a suite of normalizing transformations, including
a new adaptation of a technique based on ranks which can guarantee
normally distributed transformed data if there are no ties: ordered
quantile normalization (ORQ). ORQ normalization combines a rank-mapping
approach with a shifted logit approximation that allows
the transformation to work on data outside the original domain. It is
also able to handle new data within the original domain via linear
interpolation. The package is built to estimate the best normalizing
transformation for a vector consistently and accurately. It implements
the Box-Cox transformation, the Yeo-Johnson transformation, three types
of Lambert WxF transformations, and the ordered quantile normalization
transformation. It also estimates the normalization efficacy of other
commonly used transformations.
Author: Ryan Andrew Peterson [aut, cre]
Maintainer: Ryan Andrew Peterson <ryan-peterson@uiowa.edu>
Diff between bestNormalize versions 1.3.0 dated 2018-09-25 and 1.4.0 dated 2019-05-13
DESCRIPTION | 10 +- MD5 | 28 ++++--- NEWS.md | 6 + R/binarize.R | 2 R/orderNorm.R | 41 +++++++---- R/plots.R | 45 ++++++++---- build/vignette.rds |binary inst/doc/bestNormalize.R | 2 inst/doc/bestNormalize.Rmd | 4 - inst/doc/bestNormalize.html | 127 +++++++++++++++++++++--------------- man/orderNorm.Rd | 2 man/plot.bestNormalize.Rd | 3 tests/testthat/test_binarize.R | 30 ++++++++ tests/testthat/test_plot_methods.R |only tests/testthat/test_print_methods.R |only vignettes/bestNormalize.Rmd | 4 - 16 files changed, 195 insertions(+), 109 deletions(-)
Title: Estimate Kinship and FST under Arbitrary Population Structure
Description: Provides functions to estimate the kinship matrix of individuals from a large set of biallelic SNPs, and extract inbreeding coefficients and the generalized FST (Wright's fixation index). Method described in Ochoa and Storey (2016) <doi:10.1101/083923>.
Author: Alejandro Ochoa [aut, cre] (<https://orcid.org/0000-0003-4928-3403>),
John D. Storey [aut] (<https://orcid.org/0000-0001-5992-402X>)
Maintainer: Alejandro Ochoa <alejandro.ochoa@duke.edu>
Diff between popkin versions 1.1.2 dated 2019-02-14 and 1.2.2 dated 2019-05-13
popkin-1.1.2/popkin/R/getA.R |only popkin-1.1.2/popkin/R/getKinshipFromA.R |only popkin-1.1.2/popkin/R/getMemLim.R |only popkin-1.1.2/popkin/R/getMemLimM.R |only popkin-1.1.2/popkin/R/inbrDiag.R |only popkin-1.1.2/popkin/R/minAvgSubpops.R |only popkin-1.1.2/popkin/R/neff.R |only popkin-1.1.2/popkin/R/neffMaxGradient.R |only popkin-1.1.2/popkin/R/neffMaxHeuristic.R |only popkin-1.1.2/popkin/R/neffMaxNewton.R |only popkin-1.1.2/popkin/R/plotPopkin.R |only popkin-1.1.2/popkin/R/rescalePopkin.R |only popkin-1.1.2/popkin/R/weightsSubpops.R |only popkin-1.1.2/popkin/man/inbrDiag.Rd |only popkin-1.1.2/popkin/man/neff.Rd |only popkin-1.1.2/popkin/man/plotPopkin.Rd |only popkin-1.1.2/popkin/man/rescalePopkin.Rd |only popkin-1.1.2/popkin/man/weightsSubpops.Rd |only popkin-1.1.2/popkin/tests/testthat/mkData.R |only popkin-1.2.2/popkin/DESCRIPTION | 24 popkin-1.2.2/popkin/MD5 | 90 ++- popkin-1.2.2/popkin/NAMESPACE | 7 popkin-1.2.2/popkin/NEWS.md | 35 + popkin-1.2.2/popkin/R/fst.R | 73 +- popkin-1.2.2/popkin/R/get_A.R |only popkin-1.2.2/popkin/R/get_mem_lim.R |only popkin-1.2.2/popkin/R/get_mem_lim_m.R |only popkin-1.2.2/popkin/R/inbr.R | 59 +- popkin-1.2.2/popkin/R/inbr_diag.R |only popkin-1.2.2/popkin/R/mean_kinship.R |only popkin-1.2.2/popkin/R/min_mean_subpops.R |only popkin-1.2.2/popkin/R/n_eff.R |only popkin-1.2.2/popkin/R/n_eff_max_gradient.R |only popkin-1.2.2/popkin/R/n_eff_max_heuristic.R |only popkin-1.2.2/popkin/R/n_eff_max_newton.R |only popkin-1.2.2/popkin/R/plot_popkin.R |only popkin-1.2.2/popkin/R/popkin-deprecated.R |only popkin-1.2.2/popkin/R/popkin-package.R | 63 +- popkin-1.2.2/popkin/R/popkin.R | 88 ++- popkin-1.2.2/popkin/R/pwfst.R | 45 + popkin-1.2.2/popkin/R/rescale_popkin.R |only popkin-1.2.2/popkin/R/validate_kinship.R |only popkin-1.2.2/popkin/R/weights_subpops.R |only popkin-1.2.2/popkin/build/vignette.rds |binary popkin-1.2.2/popkin/inst/doc/popkin.R | 287 +++++------ popkin-1.2.2/popkin/inst/doc/popkin.Rmd | 209 ++++---- popkin-1.2.2/popkin/inst/doc/popkin.html | 321 +++++++------ popkin-1.2.2/popkin/man/fst.Rd | 48 - popkin-1.2.2/popkin/man/inbr.Rd | 43 + popkin-1.2.2/popkin/man/inbrDiag-deprecated.Rd |only popkin-1.2.2/popkin/man/inbr_diag.Rd |only popkin-1.2.2/popkin/man/mean_kinship.Rd |only popkin-1.2.2/popkin/man/n_eff.Rd |only popkin-1.2.2/popkin/man/neff-deprecated.Rd |only popkin-1.2.2/popkin/man/plotPopkin-deprecated.Rd |only popkin-1.2.2/popkin/man/plot_popkin.Rd |only popkin-1.2.2/popkin/man/popkin-deprecated.Rd |only popkin-1.2.2/popkin/man/popkin-package.Rd | 71 +- popkin-1.2.2/popkin/man/popkin.Rd | 46 + popkin-1.2.2/popkin/man/pwfst.Rd | 22 popkin-1.2.2/popkin/man/rescalePopkin-deprecated.Rd |only popkin-1.2.2/popkin/man/rescale_popkin.Rd |only popkin-1.2.2/popkin/man/validate_kinship.Rd |only popkin-1.2.2/popkin/man/weightsSubpops-deprecated.Rd |only popkin-1.2.2/popkin/man/weights_subpops.Rd |only popkin-1.2.2/popkin/tests/testthat/make_data.R |only popkin-1.2.2/popkin/tests/testthat/test_popkin.R | 233 +++++---- popkin-1.2.2/popkin/tests/testthat/test_popkin_BEDMatrix.R | 14 popkin-1.2.2/popkin/tests/testthat/test_popkin_fn.R | 24 popkin-1.2.2/popkin/vignettes/popkin.Rmd | 209 ++++---- 70 files changed, 1113 insertions(+), 898 deletions(-)
Title: Set of Functions to Use in Survival Analysis and in Data Science
Description: Collection of functions to improve work-flow in survival analysis and data science.
The package features include: the generation of balanced datasets, live retrieval of
protein coding genes from two public databases, generation of random
matrix based on covariance matrix, cache function to store function results.
This work was supported by two grants from the Portuguese Foundation for Science
and technology, and the EU Commission under SOUND project.
Author: André Veríssimo [aut, cre],
Susana Vinga [aut]
Maintainer: André Veríssimo <andre.verissimo@tecnico.ulisboa.pt>
Diff between loose.rock versions 1.0.12 dated 2019-05-10 and 1.0.13 dated 2019-05-13
DESCRIPTION | 10 ++--- MD5 | 8 ++-- R/coding.genes.R | 76 ++++++++++++++++++++++++---------------- inst/doc/Overview.html | 74 +++++++++++++++++++------------------- tests/testthat/test-run.cache.R | 6 ++- 5 files changed, 97 insertions(+), 77 deletions(-)
Title: Simultaneous Edit-Imputation for Continuous Microdata
Description: An integrated editing and imputation method for continuous microdata under linear constraints is implemented. It relies on a Bayesian nonparametric hierarchical modeling approach as described in Kim et al. (2015) <doi:10.1080/01621459.2015.1040881>. In this approach, the joint distribution of the data is estimated by a flexible joint probability model. The generated edit-imputed data are guaranteed to satisfy all imposed edit rules, whose types include ratio edits, balance edits and range restrictions.
Author: Quanli Wang, Hang J. Kim, Jerome P. Reiter, Lawrence H. Cox and Alan F. Karr
Maintainer: Hang J. Kim <hangkim0@gmail.com>
Diff between EditImputeCont versions 1.1.1 dated 2019-01-04 and 1.1.3 dated 2019-05-13
EditImputeCont-1.1.1/EditImputeCont/src/newmat9.cpp |only EditImputeCont-1.1.1/EditImputeCont/src/sparselib.c |only EditImputeCont-1.1.1/EditImputeCont/src/sparselib.h |only EditImputeCont-1.1.1/EditImputeCont/src/ufortify.h |only EditImputeCont-1.1.3/EditImputeCont/DESCRIPTION | 8 +++---- EditImputeCont-1.1.3/EditImputeCont/MD5 | 10 ++------- EditImputeCont-1.1.3/EditImputeCont/man/EditImputeCont-package.Rd | 2 - EditImputeCont-1.1.3/EditImputeCont/src/CBE.cpp | 11 ++++++++++ 8 files changed, 19 insertions(+), 12 deletions(-)
More information about EditImputeCont at CRAN
Permanent link
Title: Cross-Platform 'zip' Compression
Description: Cross-Platform 'zip' Compression Library. A replacement
for the 'zip' function, that does not require any additional
external tools on any platform.
Author: Gábor Csárdi, Kuba Podgórski, Rich Geldreich
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between zip versions 2.0.1 dated 2019-03-11 and 2.0.2 dated 2019-05-13
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 9 +++++++++ R/process.R | 35 +++++++++++++++++++++++++++++------ R/zip.R | 10 ++++++++++ man/unzip_process.Rd | 10 +++++++++- man/zip.Rd | 8 ++++++++ man/zip_process.Rd | 11 ++++++++++- 8 files changed, 85 insertions(+), 18 deletions(-)
Title: Propensity to Cycle Tool
Description: Functions and example data to teach and
increase the reproducibility of the methods and code underlying
the Propensity to Cycle Tool (PCT), a research project and web application
hosted at <https://www.pct.bike/>.
For an academic paper on the methods,
see Lovelace et al (2017) <doi:10.5198/jtlu.2016.862>.
Author: Robin Lovelace [aut, cre] (<https://orcid.org/0000-0001-5679-6536>),
Layik Hama [aut] (<https://orcid.org/0000-0003-1912-4890>)
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between pct versions 0.1.3 dated 2019-04-25 and 0.2.0 dated 2019-05-13
DESCRIPTION | 10 MD5 | 64 NEWS.md | 4 R/data.R | 14 R/desire_lines.R | 85 R/get_pct.R | 3 R/utils.R |only README.md | 168 - build/vignette.rds |binary data/pct_regions_lookup.rda |only inst/doc/pct-international.html | 4370 +------------------------------- inst/doc/pct.R | 6 inst/doc/pct.Rmd | 6 inst/doc/pct.html | 4387 +-------------------------------- inst/doc/pct_training.R |only inst/doc/pct_training.Rmd |only inst/doc/pct_training.html |only man/figures/README-centroids-1.png |binary man/figures/README-decay-1.png |binary man/figures/README-desire-1.png |binary man/figures/README-get_pct_lines-1.png |binary man/figures/README-rnetgove-1.png |binary man/figures/README-routes_vital-1.png |binary man/get_desire_lines.Rd | 7 man/get_od.Rd | 15 man/get_pct.Rd | 3 man/get_pct_centroids.Rd | 3 man/get_pct_lines.Rd | 3 man/get_pct_rnet.Rd | 3 man/get_pct_routes_fast.Rd | 3 man/get_pct_routes_quiet.Rd | 3 man/get_pct_zones.Rd | 3 man/pct_regions_lookup.Rd |only tests/testthat/test-desire_lines.R | 17 vignettes/pct.Rmd | 6 vignettes/pct_training.Rmd |only vignettes/refs_training.bib |only 37 files changed, 522 insertions(+), 8661 deletions(-)
Title: Another Multidimensional Analysis Package
Description: Tools for Clustering and Principal Component Analysis
(With robust methods, and parallelized functions).
Author: Antoine Lucas
Maintainer: Antoine Lucas <antoinelucas@gmail.com>
Diff between amap versions 0.8-16 dated 2018-05-14 and 0.8-17 dated 2019-05-13
amap-0.8-16/amap/INDEX |only amap-0.8-16/amap/configure.in |only amap-0.8-17/amap/DESCRIPTION | 11 - amap-0.8-17/amap/MD5 | 13 - amap-0.8-17/amap/build/vignette.rds |binary amap-0.8-17/amap/configure.ac |only amap-0.8-17/amap/exec/amap.php | 5 amap-0.8-17/amap/inst/doc/amap.pdf |binary amap-0.8-17/amap/tests/amap-test.Rout.save | 262 ++++++++++++++--------------- 9 files changed, 145 insertions(+), 146 deletions(-)
Title: Header-Only C++ Mathematical Optimization Library for
'Armadillo'
Description: 'Ensmallen' is a templated C++ mathematical optimization library
(by the 'MLPACK' team) that provides a simple set of abstractions for writing an
objective function to optimize. Provided within are various standard and
cutting-edge optimizers that include full-batch gradient descent techniques,
small-batch techniques, gradient-free optimizers, and constrained optimization.
The 'RcppEnsmallen' package includes the header files from the 'Ensmallen' library
and pairs the appropriate header files from 'armadillo' through the
'RcppArmadillo' package. Therefore, users do not need to install 'Ensmallen' nor
'Armadillo' to use 'RcppEnsmallen'. Note that 'Ensmallen' is licensed under
3-Clause BSD, 'Armadillo' starting from 7.800.0 is licensed under Apache License 2,
'RcppArmadillo' (the 'Rcpp' bindings/bridge to 'Armadillo') is licensed under
the GNU GPL version 2 or later. Thus, 'RcppEnsmallen' is also licensed under
similar terms. Note that 'Ensmallen' requires a compiler that supports
'C++11' and 'Armadillo' 6.500 or later.
Author: James Joseph Balamuta [aut, cre, cph]
(<https://orcid.org/0000-0003-2826-8458>),
Dirk Eddelbuettel [aut, cph] (<https://orcid.org/0000-0001-6419-907X>)
Maintainer: James Joseph Balamuta <balamut2@illinois.edu>
Diff between RcppEnsmallen versions 0.1.14.1.1 dated 2019-03-10 and 0.1.14.4.1 dated 2019-05-13
ChangeLog | 9 + DESCRIPTION | 6 MD5 | 18 +- NEWS.md | 33 +++-- inst/include/ensmallen_bits/bigbatch_sgd/adaptive_stepsize.hpp | 66 ++++++++-- inst/include/ensmallen_bits/bigbatch_sgd/backtracking_line_search.hpp | 2 inst/include/ensmallen_bits/ens_version.hpp | 2 inst/include/ensmallen_bits/fw/atoms.hpp | 2 inst/include/ensmallen_bits/sdp/primal_dual_impl.hpp | 5 inst/include/ensmallen_bits/sgdr/cyclical_decay.hpp | 1 10 files changed, 108 insertions(+), 36 deletions(-)
Title: Open Welfare Data Brazil
Description: Tools for collecting municipal-level data <http://www.transparencia.gov.br/swagger-ui.html> from several Brazilian governmental social programs.
Author: Joao Pedro Oliveira dos Santos [aut, cre]
(<https://orcid.org/0000-0003-1752-265X>)
Maintainer: Joao Pedro Oliveira dos Santos <joaopsantos@pm.me>
Diff between owdbr versions 1.0.0.34 dated 2019-05-10 and 1.0.0.35 dated 2019-05-13
DESCRIPTION | 9 ++--- MD5 | 18 +++++----- R/getpbf_mun.R | 60 ++++++++++++++++------------------ R/getpeti_mun.R | 48 +++++++++++++-------------- R/munlist.R | 64 +++++++++++++----------------------- R/uflist.R | 93 +++++++++++++++++++++++++++++------------------------ man/getpbf_mun.Rd | 27 +++++++-------- man/getpeti_mun.Rd | 6 +-- man/munlist.Rd | 23 ++++++------- man/uflist.Rd | 14 +++++-- 10 files changed, 176 insertions(+), 186 deletions(-)
Title: Local Adaptation and Evaluation of Digital Soil Maps
Description: Local adaptation and evaluation of digital soil maps in raster
format by use of point location soil property data.
Author: Kristin Piikki & Mats Söderström
Maintainer: Kristin Piikki <kristin.piikki@slu.se>
Diff between mapsRinteractive versions 0.1.0 dated 2018-07-05 and 1.0.0 dated 2019-05-13
mapsRinteractive-0.1.0/mapsRinteractive/R/E.r |only mapsRinteractive-0.1.0/mapsRinteractive/R/MAE.R |only mapsRinteractive-0.1.0/mapsRinteractive/R/ME.R |only mapsRinteractive-0.1.0/mapsRinteractive/R/MRI.R |only mapsRinteractive-0.1.0/mapsRinteractive/R/RMSE.r |only mapsRinteractive-0.1.0/mapsRinteractive/R/evaluate.r |only mapsRinteractive-0.1.0/mapsRinteractive/R/export.r |only mapsRinteractive-0.1.0/mapsRinteractive/R/import.r |only mapsRinteractive-0.1.0/mapsRinteractive/R/regressionkrige.r |only mapsRinteractive-0.1.0/mapsRinteractive/R/residualkrige.r |only mapsRinteractive-0.1.0/mapsRinteractive/man/E.Rd |only mapsRinteractive-1.0.0/mapsRinteractive/DESCRIPTION | 8 mapsRinteractive-1.0.0/mapsRinteractive/MD5 | 56 +- mapsRinteractive-1.0.0/mapsRinteractive/NAMESPACE | 11 mapsRinteractive-1.0.0/mapsRinteractive/R/check.R |only mapsRinteractive-1.0.0/mapsRinteractive/R/e.r |only mapsRinteractive-1.0.0/mapsRinteractive/R/evaluate.R |only mapsRinteractive-1.0.0/mapsRinteractive/R/even.R |only mapsRinteractive-1.0.0/mapsRinteractive/R/feedback.R |only mapsRinteractive-1.0.0/mapsRinteractive/R/kth.R |only mapsRinteractive-1.0.0/mapsRinteractive/R/mae.R |only mapsRinteractive-1.0.0/mapsRinteractive/R/me.R |only mapsRinteractive-1.0.0/mapsRinteractive/R/mri.R |only mapsRinteractive-1.0.0/mapsRinteractive/R/odd.R |only mapsRinteractive-1.0.0/mapsRinteractive/R/ordkrige.r | 95 +-- mapsRinteractive-1.0.0/mapsRinteractive/R/r2.R | 21 mapsRinteractive-1.0.0/mapsRinteractive/R/regkrige.r |only mapsRinteractive-1.0.0/mapsRinteractive/R/reskrige.r |only mapsRinteractive-1.0.0/mapsRinteractive/R/rmse.r |only mapsRinteractive-1.0.0/mapsRinteractive/R/spdf_from_extent.r |only mapsRinteractive-1.0.0/mapsRinteractive/data/CLAYr.RData |binary mapsRinteractive-1.0.0/mapsRinteractive/man/check.Rd |only mapsRinteractive-1.0.0/mapsRinteractive/man/e.Rd |only mapsRinteractive-1.0.0/mapsRinteractive/man/evaluate.Rd |only mapsRinteractive-1.0.0/mapsRinteractive/man/even.Rd |only mapsRinteractive-1.0.0/mapsRinteractive/man/fback.Rd |only mapsRinteractive-1.0.0/mapsRinteractive/man/kth.Rd |only mapsRinteractive-1.0.0/mapsRinteractive/man/mae.Rd | 16 mapsRinteractive-1.0.0/mapsRinteractive/man/me.Rd | 15 mapsRinteractive-1.0.0/mapsRinteractive/man/mri.Rd | 247 ++++------ mapsRinteractive-1.0.0/mapsRinteractive/man/odd.Rd |only mapsRinteractive-1.0.0/mapsRinteractive/man/ordkrige.Rd |only mapsRinteractive-1.0.0/mapsRinteractive/man/r2.Rd | 14 mapsRinteractive-1.0.0/mapsRinteractive/man/regkrige.Rd |only mapsRinteractive-1.0.0/mapsRinteractive/man/reskrige.Rd |only mapsRinteractive-1.0.0/mapsRinteractive/man/rmse.Rd | 16 mapsRinteractive-1.0.0/mapsRinteractive/man/spdf_from_extent.Rd |only 47 files changed, 260 insertions(+), 239 deletions(-)
More information about mapsRinteractive at CRAN
Permanent link
Title: Functions for Fetching 'GeOMe-db' Data
Description: The Genomic Observatory Metadatabase (GeOMe Database) is an open access repository for
geographic and ecological metadata associated with sequenced samples. This package is used to retrieve
GeOMe data for analysis. See <http://www.geome-db.org> for more information regarding GeOMe.
Author: RJ Ewing
Maintainer: RJ Ewing<rj@rjewing.com>
Diff between geomedb versions 0.2 dated 2017-10-16 and 1.0.0 dated 2019-05-13
DESCRIPTION | 22 ++-- MD5 | 19 ++- NAMESPACE | 2 NEWS.md |only R/FimsUtils.R | 242 +++++++++++++++++++++++++++++++------------------ README.md | 56 ++++++++--- man/listEntities.Rd |only man/listExpeditions.Rd | 12 +- man/listMarkers.Rd | 5 - man/listProjects.Rd |only man/queryFasta.Rd | 16 ++- man/queryMetadata.Rd | 36 +++++-- 12 files changed, 273 insertions(+), 137 deletions(-)
Title: A Toolkit for Using Whole Building Simulation Program
'EnergyPlus'
Description: A rich toolkit of using the whole building simulation program
'EnergyPlus'(<https://energyplus.net>), which enables programmatic
navigation, modification of 'EnergyPlus' models and makes it less painful to
do parametric simulations and analysis.
Author: Hongyuan Jia [aut, cre] (<https://orcid.org/0000-0002-0075-8183>)
Maintainer: Hongyuan Jia <hongyuan.jia@bears-berkeley.sg>
Diff between eplusr versions 0.10.1 dated 2019-05-09 and 0.10.2 dated 2019-05-13
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 10 ++++++++++ R/impl-sql.R | 2 +- inst/doc/eplusr.html | 30 +++++++++++++++--------------- tests/testthat/test_format.R | 2 +- tests/testthat/test_idf.R | 23 ++++++++++------------- 7 files changed, 46 insertions(+), 39 deletions(-)
Title: Terminal Progress Bars
Description: Configurable Progress bars, they may include percentage,
elapsed time, and/or the estimated completion time. They work in
terminals, in 'Emacs' 'ESS', 'RStudio', 'Windows' 'Rgui' and the
'macOS' 'R.app'. The package also provides a 'C++' 'API', that works
with or without 'Rcpp'.
Author: Gábor Csárdi [aut, cre], Rich FitzJohn [aut]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between progress versions 1.2.0 dated 2018-06-14 and 1.2.1 dated 2019-05-13
progress-1.2.0/progress/inst/NEWS.md |only progress-1.2.0/progress/inst/README.markdown |only progress-1.2.0/progress/inst/logo.png |only progress-1.2.0/progress/inst/logo.svg |only progress-1.2.1/progress/DESCRIPTION | 8 - progress-1.2.1/progress/MD5 | 21 +--- progress-1.2.1/progress/R/progress.R | 69 ++++++++++--- progress-1.2.1/progress/R/utils.R | 21 ++-- progress-1.2.1/progress/README.md |only progress-1.2.1/progress/inst/include/RProgress.h | 88 ++++++++++++----- progress-1.2.1/progress/man/figures |only progress-1.2.1/progress/man/progress_bar.Rd | 2 progress-1.2.1/progress/tests/testthat/test-cpp.R | 2 progress-1.2.1/progress/tests/testthat/test-progress.R | 11 ++ 14 files changed, 160 insertions(+), 62 deletions(-)
Title: Probabilistic Sex Estimate using Logistic Regression, Based on
VISual Traits of the Human Os Coxae
Description: An R-Shiny application implementing a method of sexing the human os coxae based on logistic regressions and Bruzek's nonmetric traits <doi:10.1002/ajpa.23855>.
Author: Frédéric Santos [aut, cre] (<https://orcid.org/0000-0003-1445-3871>),
Élodie Bernardeau [ctb]
Maintainer: Frédéric Santos <frederic.santos@u-bordeaux.fr>
Diff between PELVIS versions 1.1.0 dated 2019-03-11 and 1.2.1 dated 2019-05-13
PELVIS-1.1.0/PELVIS/data/refData.rda |only PELVIS-1.1.0/PELVIS/man/refData.Rd |only PELVIS-1.2.1/PELVIS/DESCRIPTION | 23 PELVIS-1.2.1/PELVIS/LICENSE | 1193 ++++------ PELVIS-1.2.1/PELVIS/MD5 | 54 PELVIS-1.2.1/PELVIS/NEWS.md | 24 PELVIS-1.2.1/PELVIS/R/StartPELVIS.R | 2 PELVIS-1.2.1/PELVIS/R/addMetavars.R | 15 PELVIS-1.2.1/PELVIS/R/bruzek02.R | 31 PELVIS-1.2.1/PELVIS/R/indivSexing.R | 68 PELVIS-1.2.1/PELVIS/R/metavar.R | 35 PELVIS-1.2.1/PELVIS/R/sexingFromFile.R | 133 - PELVIS-1.2.1/PELVIS/R/tenFoldCV.glm.R | 83 PELVIS-1.2.1/PELVIS/README.md | 26 PELVIS-1.2.1/PELVIS/data/CTscanDataBruzek.rda |only PELVIS-1.2.1/PELVIS/data/refDataBruzek02.rda |only PELVIS-1.2.1/PELVIS/data/rightBonesDataBruzek.rda |only PELVIS-1.2.1/PELVIS/inst/CITATION | 4 PELVIS-1.2.1/PELVIS/inst/PELVISShinyApp/server.R | 376 +-- PELVIS-1.2.1/PELVIS/inst/PELVISShinyApp/ui.R | 230 - PELVIS-1.2.1/PELVIS/inst/PELVISShinyApp/validData.R | 25 PELVIS-1.2.1/PELVIS/inst/PELVISShinyApp/www/banner_PELVIS.png |only PELVIS-1.2.1/PELVIS/inst/PELVISShinyApp/www/kappa.css | 1 PELVIS-1.2.1/PELVIS/inst/image |only PELVIS-1.2.1/PELVIS/man/CTscanDataBruzek.Rd |only PELVIS-1.2.1/PELVIS/man/PELVIS-package.Rd | 13 PELVIS-1.2.1/PELVIS/man/StartPELVIS.Rd | 10 PELVIS-1.2.1/PELVIS/man/indivSexing.Rd | 14 PELVIS-1.2.1/PELVIS/man/metavar.Rd | 6 PELVIS-1.2.1/PELVIS/man/refDataBruzek02.Rd |only PELVIS-1.2.1/PELVIS/man/rightBonesDataBruzek.Rd |only PELVIS-1.2.1/PELVIS/man/sexingFromFile.Rd | 13 PELVIS-1.2.1/PELVIS/man/tenFoldCV.glm.Rd | 10 33 files changed, 1148 insertions(+), 1241 deletions(-)
Title: Interactive Viewing of Spatial Data in R
Description: Quickly and conveniently create interactive
visualisations of spatial data with or without background maps.
Attributes of displayed features are fully queryable via pop-up
windows. Additional functionality includes methods to visualise true-
and false-color raster images, bounding boxes, small multiples and 3D
raster data cubes.
Author: Tim Appelhans [cre, aut],
Florian Detsch [aut],
Christoph Reudenbach [aut],
Stefan Woellauer [aut],
Spaska Forteva [ctb],
Thomas Nauss [ctb],
Edzer Pebesma [ctb],
Kenton Russell [ctb],
Michael Sumner [ctb],
Jochen Darley [ctb],
Pierre Roudier [ctb],
Patrick Schratz [ctb],
Environmental Informatics Marburg [ctb]
Maintainer: Tim Appelhans <tim.appelhans@gmail.com>
Diff between mapview versions 2.6.3 dated 2018-12-19 and 2.7.0 dated 2019-05-13
mapview-2.6.3/mapview/data/poppendorf.rda |only mapview-2.6.3/mapview/inst/extdata/basic_small.png |only mapview-2.7.0/mapview/DESCRIPTION | 19 mapview-2.7.0/mapview/MD5 | 86 mapview-2.7.0/mapview/NAMESPACE | 2 mapview-2.7.0/mapview/NEWS | 13 mapview-2.7.0/mapview/NEWS.md | 13 mapview-2.7.0/mapview/R/burst.R | 4 mapview-2.7.0/mapview/R/color.R | 2 mapview-2.7.0/mapview/R/cubeView.R | 13 mapview-2.7.0/mapview/R/extensions.R | 1299 +++++------- mapview-2.7.0/mapview/R/extent.R | 4 mapview-2.7.0/mapview/R/files.R |only mapview-2.7.0/mapview/R/garnishMap.R | 9 mapview-2.7.0/mapview/R/mapView.R | 88 mapview-2.7.0/mapview/R/mapview-deprecated.R |only mapview-2.7.0/mapview/R/missing.R | 6 mapview-2.7.0/mapview/R/plainView.R | 478 +--- mapview-2.7.0/mapview/R/plus.R | 7 mapview-2.7.0/mapview/R/popup.R | 893 +++----- mapview-2.7.0/mapview/R/raster.R | 39 mapview-2.7.0/mapview/R/sf.R | 39 mapview-2.7.0/mapview/R/slideView.R | 115 - mapview-2.7.0/mapview/R/stars.R | 2 mapview-2.7.0/mapview/R/sync.R | 59 mapview-2.7.0/mapview/R/viewRGB.R | 15 mapview-2.7.0/mapview/README.md | 123 - mapview-2.7.0/mapview/data/breweries.rda |binary mapview-2.7.0/mapview/data/franconia.rda |binary mapview-2.7.0/mapview/data/trails.rda |binary mapview-2.7.0/mapview/man/addFeatures.Rd | 19 mapview-2.7.0/mapview/man/addHomeButton.Rd | 20 mapview-2.7.0/mapview/man/addImageQuery.Rd | 26 mapview-2.7.0/mapview/man/addLogo.Rd | 29 mapview-2.7.0/mapview/man/addMouseCoordinates.Rd | 45 mapview-2.7.0/mapview/man/figures |only mapview-2.7.0/mapview/man/garnishMap.Rd | 9 mapview-2.7.0/mapview/man/latticeView.Rd | 48 mapview-2.7.0/mapview/man/mapView.Rd | 22 mapview-2.7.0/mapview/man/mapview-deprecated.Rd |only mapview-2.7.0/mapview/man/plainView.Rd | 53 mapview-2.7.0/mapview/man/plus.Rd | 5 mapview-2.7.0/mapview/man/popup.Rd | 116 - mapview-2.7.0/mapview/man/renderslideView.Rd |only mapview-2.7.0/mapview/man/slideView.Rd | 74 mapview-2.7.0/mapview/man/slideViewOutput.Rd |only mapview-2.7.0/mapview/man/viewRGB.Rd | 9 mapview-2.7.0/mapview/tests/testthat/test-mapviewControls.R | 4 48 files changed, 1630 insertions(+), 2177 deletions(-)
Title: Create Tidy Data Frames of Marginal Effects for 'ggplot' from
Model Outputs
Description: Compute marginal effects from statistical models and returns the
result as tidy data frames. These data frames are ready to use with the
'ggplot2'-package. Marginal effects can be calculated for many different
models. Interaction terms, splines and polynomial terms are also supported.
The main functions are ggpredict(), ggemmeans() and ggeffect(). There is a
generic plot()-method to plot the results using 'ggplot2'.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between ggeffects versions 0.9.0 dated 2019-03-17 and 0.10.0 dated 2019-05-13
ggeffects-0.10.0/ggeffects/DESCRIPTION | 20 ggeffects-0.10.0/ggeffects/MD5 | 141 +++-- ggeffects-0.10.0/ggeffects/NAMESPACE | 6 ggeffects-0.10.0/ggeffects/NEWS.md | 23 ggeffects-0.10.0/ggeffects/R/emm.R | 1 ggeffects-0.10.0/ggeffects/R/get_predictions_MixMod.R | 6 ggeffects-0.10.0/ggeffects/R/get_predictions_coxph.R | 40 + ggeffects-0.10.0/ggeffects/R/get_predictions_gamlss.R |only ggeffects-0.10.0/ggeffects/R/get_predictions_geeglm.R |only ggeffects-0.10.0/ggeffects/R/get_predictions_generic2.R | 8 ggeffects-0.10.0/ggeffects/R/get_predictions_glm.R | 4 ggeffects-0.10.0/ggeffects/R/get_predictions_glmRob.R |only ggeffects-0.10.0/ggeffects/R/get_predictions_glmmTMB.R | 6 ggeffects-0.10.0/ggeffects/R/get_predictions_glmrob_base.R |only ggeffects-0.10.0/ggeffects/R/get_predictions_lm.R | 16 ggeffects-0.10.0/ggeffects/R/get_predictions_lme.R | 8 ggeffects-0.10.0/ggeffects/R/get_predictions_lmrob_base.R |only ggeffects-0.10.0/ggeffects/R/get_predictions_logistf.R |only ggeffects-0.10.0/ggeffects/R/get_predictions_merMod.R | 6 ggeffects-0.10.0/ggeffects/R/get_predictions_ols.R |only ggeffects-0.10.0/ggeffects/R/get_predictions_polr.R | 11 ggeffects-0.10.0/ggeffects/R/get_predictions_rq.R |only ggeffects-0.10.0/ggeffects/R/get_predictions_svyglmnb.R | 4 ggeffects-0.10.0/ggeffects/R/get_predictions_tobit.R |only ggeffects-0.10.0/ggeffects/R/get_predictions_zeroinfl.R | 2 ggeffects-0.10.0/ggeffects/R/ggaverage.R | 20 ggeffects-0.10.0/ggeffects/R/ggemmeans.R | 122 ---- ggeffects-0.10.0/ggeffects/R/ggemmeans_MixMod.R |only ggeffects-0.10.0/ggeffects/R/ggemmeans_add_confint.R |only ggeffects-0.10.0/ggeffects/R/ggemmeans_glmmTMB.R |only ggeffects-0.10.0/ggeffects/R/ggemmeans_predict_models.R |only ggeffects-0.10.0/ggeffects/R/ggemmeans_zi_predictions.R |only ggeffects-0.10.0/ggeffects/R/ggpredict.R | 52 + ggeffects-0.10.0/ggeffects/R/plot.R | 16 ggeffects-0.10.0/ggeffects/R/predict_standard_errors_from_vcov.R | 49 + ggeffects-0.10.0/ggeffects/R/predictions.R | 81 +-- ggeffects-0.10.0/ggeffects/R/print.R | 17 ggeffects-0.10.0/ggeffects/R/select_helpers.R | 6 ggeffects-0.10.0/ggeffects/R/utils.R | 12 ggeffects-0.10.0/ggeffects/R/utils_expand_data_to_grid.R | 12 ggeffects-0.10.0/ggeffects/R/utils_model_function.R | 28 - ggeffects-0.10.0/ggeffects/R/utils_parse_vars_arguments.R | 23 ggeffects-0.10.0/ggeffects/R/utils_set_attr.R | 3 ggeffects-0.10.0/ggeffects/README.md | 2 ggeffects-0.10.0/ggeffects/build/partial.rdb |binary ggeffects-0.10.0/ggeffects/build/vignette.rds |binary ggeffects-0.10.0/ggeffects/inst/doc/differencepredictemmeans.html | 28 - ggeffects-0.10.0/ggeffects/inst/doc/effectsatvalues.R | 4 ggeffects-0.10.0/ggeffects/inst/doc/effectsatvalues.Rmd | 11 ggeffects-0.10.0/ggeffects/inst/doc/effectsatvalues.html | 270 +++++----- ggeffects-0.10.0/ggeffects/inst/doc/logisticmixedmodel.R |only ggeffects-0.10.0/ggeffects/inst/doc/logisticmixedmodel.Rmd |only ggeffects-0.10.0/ggeffects/inst/doc/logisticmixedmodel.html |only ggeffects-0.10.0/ggeffects/inst/doc/marginaleffects.Rmd | 4 ggeffects-0.10.0/ggeffects/inst/doc/marginaleffects.html | 60 +- ggeffects-0.10.0/ggeffects/inst/doc/plotcustomize.html | 4 ggeffects-0.10.0/ggeffects/inst/doc/plotmethod.html | 6 ggeffects-0.10.0/ggeffects/inst/doc/randomeffects.Rmd | 8 ggeffects-0.10.0/ggeffects/inst/doc/randomeffects.html | 106 +-- ggeffects-0.10.0/ggeffects/inst/doc/stata.html | 44 - ggeffects-0.10.0/ggeffects/man/emm.Rd | 16 ggeffects-0.10.0/ggeffects/man/ggpredict.Rd | 94 ++- ggeffects-0.10.0/ggeffects/man/plot.Rd | 7 ggeffects-0.10.0/ggeffects/tests/testthat/test-Gam2.R | 2 ggeffects-0.10.0/ggeffects/tests/testthat/test-MCMCglmm.R | 6 ggeffects-0.10.0/ggeffects/tests/testthat/test-brms-trial.R | 45 - ggeffects-0.10.0/ggeffects/tests/testthat/test-gamm4.R | 4 ggeffects-0.10.0/ggeffects/tests/testthat/test-geeglm.R |only ggeffects-0.10.0/ggeffects/tests/testthat/test-glmRob.R |only ggeffects-0.10.0/ggeffects/tests/testthat/test-glmer.R | 44 - ggeffects-0.10.0/ggeffects/tests/testthat/test-glmrob_base.R |only ggeffects-0.10.0/ggeffects/tests/testthat/test-linear-models.R | 19 ggeffects-0.10.0/ggeffects/tests/testthat/test-lmrob_base.R |only ggeffects-0.10.0/ggeffects/tests/testthat/test-logistf.R |only ggeffects-0.10.0/ggeffects/tests/testthat/test-lrm.R |only ggeffects-0.10.0/ggeffects/tests/testthat/test-plot.R | 2 ggeffects-0.10.0/ggeffects/tests/testthat/test-rq.R |only ggeffects-0.10.0/ggeffects/tests/testthat/test-survreg.R |only ggeffects-0.10.0/ggeffects/tests/testthat/test-tobit.R |only ggeffects-0.10.0/ggeffects/vignettes/effectsatvalues.Rmd | 11 ggeffects-0.10.0/ggeffects/vignettes/logisticmixedmodel.Rmd |only ggeffects-0.10.0/ggeffects/vignettes/marginaleffects.Rmd | 4 ggeffects-0.10.0/ggeffects/vignettes/randomeffects.Rmd | 8 ggeffects-0.9.0/ggeffects/R/colour_tools.R |only ggeffects-0.9.0/ggeffects/R/get_ranef_variance.R |only ggeffects-0.9.0/ggeffects/man/dot-collapse_cond.Rd |only ggeffects-0.9.0/ggeffects/man/dot-get_variance_random.Rd |only 87 files changed, 843 insertions(+), 709 deletions(-)
Title: Bayesian Hierarchical Multi-Subject Multiscale Analysis of
Functional MRI Data
Description: Performs Bayesian hierarchical multi-subject multiscale analysis of fMRI data as described in Sanyal & Ferreira (2012) <DOI:10.1016/j.neuroimage.2012.08.041> using wavelet based prior that borrows strength across subjects and returns posterior smoothed versions of the fMRI data and samples from the posterior distribution.
Author: Nilotpal Sanyal [aut, cre],
Marco A.R. Ferreira [aut]
Maintainer: Nilotpal Sanyal <nsanyal@stanford.edu>
Diff between BHMSMAfMRI versions 1.1 dated 2017-05-04 and 1.2 dated 2019-05-13
DESCRIPTION | 17 MD5 | 20 NAMESPACE | 5 NEWS | 14 R/10.read.fmridata.r | 9 build/vignette.rds |binary inst/doc/BHMSMAfMRIvignette.Rnw | 858 ++++++++++++++++++--------------------- inst/doc/BHMSMAfMRIvignette.pdf |binary man/read.fmridata.Rd | 2 vignettes/BHMSMAfMRIvignette.Rnw | 858 ++++++++++++++++++--------------------- vignettes/BOLDMATH2.TEX | 146 ++---- 11 files changed, 899 insertions(+), 1030 deletions(-)
Title: Visualizes a Matrix as Heatmap
Description: Visualizes a matrix object plainly as heatmap. It provides S3 functions to plot simple matrices and loading matrices.
Author: Sigbert Klinke
Maintainer: Sigbert Klinke <sigbert@hu-berlin.de>
Diff between plot.matrix versions 1.0 dated 2018-11-27 and 1.1 dated 2019-05-13
DESCRIPTION | 14 +- MD5 | 19 ++ NAMESPACE | 5 R/assignColors.R |only R/plot.loadings.R |only R/plot.matrix.R | 357 +++++++++++++++++++++++++++++++++++++++------------ README.md |only build |only inst |only man/assignColors.Rd |only man/plot.loadings.Rd |only man/plot.matrix.Rd | 111 +++++++++++++-- vignettes |only 13 files changed, 399 insertions(+), 107 deletions(-)
Title: Tools for Analyzing Mixed Effect Regression Models
Description: Provides methods for extracting results from mixed-effect model
objects fit with the 'lme4' package. Allows construction of prediction intervals
efficiently from large scale linear and generalized linear mixed-effects models.
Author: Jared E. Knowles [aut, cre],
Carl Frederick [aut],
Alex Whitworth [ctb]
Maintainer: Jared E. Knowles <jknowles@gmail.com>
Diff between merTools versions 0.4.1 dated 2018-06-05 and 0.5.0 dated 2019-05-13
merTools-0.4.1/merTools/tests/testthat-a_m.R |only merTools-0.4.1/merTools/tests/testthat-n_z.R |only merTools-0.4.1/merTools/tests/testthat/test-merPredict.R |only merTools-0.5.0/merTools/DESCRIPTION | 18 merTools-0.5.0/merTools/MD5 | 119 - merTools-0.5.0/merTools/NAMESPACE | 5 merTools-0.5.0/merTools/NEWS.md | 35 merTools-0.5.0/merTools/R/REmargins.R |only merTools-0.5.0/merTools/R/helpers.R | 22 merTools-0.5.0/merTools/R/merExpectedRank.R | 11 merTools-0.5.0/merTools/R/merExtract.R | 13 merTools-0.5.0/merTools/R/merFastDisplay.R | 4 merTools-0.5.0/merTools/R/merList.R | 212 + merTools-0.5.0/merTools/R/merPredict.R | 110 merTools-0.5.0/merTools/R/merSubstEff.R | 17 merTools-0.5.0/merTools/R/parallel.R | 2 merTools-0.5.0/merTools/R/shinyMer.R | 1 merTools-0.5.0/merTools/R/subBoot.R | 31 merTools-0.5.0/merTools/README.md | 227 +- merTools-0.5.0/merTools/build/vignette.rds |binary merTools-0.5.0/merTools/inst/doc/Using_predictInterval.R | 46 merTools-0.5.0/merTools/inst/doc/Using_predictInterval.Rmd | 46 merTools-0.5.0/merTools/inst/doc/Using_predictInterval.html | 541 ++-- merTools-0.5.0/merTools/inst/doc/imputation.R | 32 merTools-0.5.0/merTools/inst/doc/imputation.Rmd | 38 merTools-0.5.0/merTools/inst/doc/imputation.html | 1106 ++++++---- merTools-0.5.0/merTools/inst/doc/marginal_effects.R |only merTools-0.5.0/merTools/inst/doc/marginal_effects.Rmd |only merTools-0.5.0/merTools/inst/doc/marginal_effects.html |only merTools-0.5.0/merTools/inst/doc/merToolsIntro.html | 465 ++-- merTools-0.5.0/merTools/inst/shiny-apps/shinyMer/server.r | 18 merTools-0.5.0/merTools/inst/shiny-apps/shinyMer/ui.R | 5 merTools-0.5.0/merTools/man/REextract.Rd | 1 merTools-0.5.0/merTools/man/REimpact.Rd | 19 merTools-0.5.0/merTools/man/REmargins.Rd |only merTools-0.5.0/merTools/man/draw.Rd | 8 merTools-0.5.0/merTools/man/expectedRank.Rd | 5 merTools-0.5.0/merTools/man/fastdisp.Rd | 2 merTools-0.5.0/merTools/man/figures/README_FEsimPlot-1.png |binary merTools-0.5.0/merTools/man/figures/README_reImpactplot-1.png |binary merTools-0.5.0/merTools/man/figures/README_reSimplot-1.png |binary merTools-0.5.0/merTools/man/figures/README_substImpactPredict-1.png |binary merTools-0.5.0/merTools/man/figures/README_unnamed-chunk-13-1.png |binary merTools-0.5.0/merTools/man/figures/README_unnamed-chunk-15-1.png |only merTools-0.5.0/merTools/man/figures/README_unnamed-chunk-8-1.png |binary merTools-0.5.0/merTools/man/figures/README_unnamed-chunk-9-1.png |binary merTools-0.5.0/merTools/man/merModList.Rd | 19 merTools-0.5.0/merTools/man/merTools.Rd | 1 merTools-0.5.0/merTools/man/plot_sim_error_chks.Rd | 6 merTools-0.5.0/merTools/man/predictInterval.Rd | 11 merTools-0.5.0/merTools/man/print.merModList.Rd | 8 merTools-0.5.0/merTools/man/subBoot.Rd | 7 merTools-0.5.0/merTools/man/summary.merModList.Rd | 8 merTools-0.5.0/merTools/tests/testthat-a_p.R |only merTools-0.5.0/merTools/tests/testthat-p_z.R |only merTools-0.5.0/merTools/tests/testthat.R |only merTools-0.5.0/merTools/tests/testthat/test-REmargins.R |only merTools-0.5.0/merTools/tests/testthat/test-expectedRank.R | 20 merTools-0.5.0/merTools/tests/testthat/test-helpers.R | 22 merTools-0.5.0/merTools/tests/testthat/test-merData.R | 13 merTools-0.5.0/merTools/tests/testthat/test-merModList.R | 36 merTools-0.5.0/merTools/tests/testthat/test-plots.R | 102 merTools-0.5.0/merTools/tests/testthat/test-predict.R |only merTools-0.5.0/merTools/tests/testthat/test-seeds.R | 1 merTools-0.5.0/merTools/tests/testthat/test-subboot.R | 36 merTools-0.5.0/merTools/vignettes/Using_predictInterval.Rmd | 46 merTools-0.5.0/merTools/vignettes/imputation.Rmd | 38 merTools-0.5.0/merTools/vignettes/marginal_effects.Rmd |only 68 files changed, 2153 insertions(+), 1380 deletions(-)
Title: Required 'libphonenumber' jars for the 'dialr' Package
Description: Collects 'libphonenumber' jars required for the
'dialr' package.
Author: Danny Smith [aut, cre],
Google Inc. [ctb, cph] (libphonenumber),
Vonage Holdings Corp. [ctb, cph] (libphonenumber),
Ian Galpin [ctb, cph] (libphonenumber),
Ben Gertzfield [ctb, cph] (libphonenumber)
Maintainer: Danny Smith <danny@gorcha.org>
Diff between dialrjars versions 8.10.9 dated 2019-04-24 and 8.10.11.1 dated 2019-05-13
dialrjars-8.10.11.1/dialrjars/DESCRIPTION | 11 +-- dialrjars-8.10.11.1/dialrjars/MD5 | 17 +++-- dialrjars-8.10.11.1/dialrjars/NEWS.md | 17 +++++ dialrjars-8.10.11.1/dialrjars/R/dialrjars.R | 4 - dialrjars-8.10.11.1/dialrjars/README.md | 13 +++- dialrjars-8.10.11.1/dialrjars/inst/java/carrier-1.107.jar |only dialrjars-8.10.11.1/dialrjars/inst/java/geocoder-2.117.jar |only dialrjars-8.10.11.1/dialrjars/inst/java/libphonenumber-8.10.11.jar |only dialrjars-8.10.11.1/dialrjars/inst/java/prefixmapper-2.117.jar |only dialrjars-8.10.11.1/dialrjars/man/dialrjars-package.Rd | 6 + dialrjars-8.10.11.1/dialrjars/tests/testthat/test-dialrjars.R | 31 +++++++++- dialrjars-8.10.9/dialrjars/inst/java/libphonenumber-8.10.9.jar |only 12 files changed, 77 insertions(+), 22 deletions(-)
Title: Regression Models with Break-Points / Change-Points Estimation
Description: Given a regression model, segmented `updates' it by adding one or more segmented (i.e., piece-wise linear) relationships. Several variables with multiple breakpoints are allowed. The estimation method is discussed in Muggeo (2003, <doi:10.1002/sim.1545>) and illustrated in Muggeo (2008, <https://www.r-project.org/doc/Rnews/Rnews_2008-1.pdf>). An approach for hypothesis testing is presented in Muggeo (2016, <doi:10.1080/00949655.2016.1149855>).
Author: Vito M. R. Muggeo [aut, cre]
Maintainer: Vito M. R. Muggeo <vito.muggeo@unipa.it>
Diff between segmented versions 0.5-3.0 dated 2017-11-30 and 0.5-4.0 dated 2019-05-13
DESCRIPTION | 10 MD5 | 48 +-- NAMESPACE | 3 NEWS | 546 +++++++++++++++++++------------------ R/confint.segmented.R | 690 ++++++++++++++++++++++++++++++++++++++++++----- R/davies.test.r | 15 - R/lines.segmented.R | 5 R/plot.segmented.R | 60 ++-- R/pscore.test.r | 636 ++++++++++++++++++++++++------------------- R/seg.lm.fit.boot.r | 16 + R/segmented.Arima.r | 5 R/segmented.default.r | 12 R/segmented.glm.R | 10 R/segmented.lm.R | 10 data/down.rda |binary data/plant.rda |binary data/stagnant.rda |binary man/aapc.Rd | 4 man/broken.line.Rd | 2 man/confint.segmented.Rd | 37 +- man/davies.test.Rd | 6 man/plot.segmented.Rd | 6 man/pscore.test.rd | 163 +++++------ man/segmented-package.Rd | 143 +++++---- man/segmented.Rd | 15 - 25 files changed, 1576 insertions(+), 866 deletions(-)
Title: Data Manipulation Verbs for the Spatial Classes
Description: Methods for 'dplyr' verbs for 'sp' 'Spatial' classes. The basic
verbs that modify data attributes, remove or re-arrange rows are supported
and provide complete 'Spatial' analogues of the input data. The group by
and summarize work flow returns a non-topological spatial union. There is
limited support for joins, with left and inner to copy attributes from
another table.
Author: Michael D. Sumner [aut, cre],
Joscha Legewie [ctb],
Jussi Jousimo [ctb]
Maintainer: Michael D. Sumner <mdsumner@gmail.com>
Diff between spdplyr versions 0.2.0 dated 2019-02-04 and 0.3.0 dated 2019-05-13
DESCRIPTION | 9 +++++---- MD5 | 20 +++++++++++--------- NEWS.md | 4 ++++ R/sdplyr-Spatial.r | 7 ------- README.md | 5 +++-- build/vignette.rds |binary inst/WORDLIST |only inst/doc/spdplyr.html | 11 +++++++---- man/dplyr-S3.Rd | 8 -------- tests/spelling.R |only tests/testthat/test-adv-dplyr.R | 15 --------------- tests/testthat/test-dplyr-0.6.0.R | 4 ++-- 12 files changed, 32 insertions(+), 51 deletions(-)
Title: Cache 'CRAN'-Like Metadata and R Packages
Description: Metadata and package cache for CRAN-like repositories.
This is a utility package to be used by package management tools
that want to take advantage of caching.
Author: Gábor Csárdi [aut, cre]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between pkgcache versions 1.0.3 dated 2019-01-11 and 1.0.4 dated 2019-05-13
DESCRIPTION | 6 +- MD5 | 38 ++++++++-------- NAMESPACE | 1 NEWS.md | 8 +++ R/async-http.R | 16 +++++- R/bioc.R |only R/metadata-cache.R | 80 +++++++++++++--------------------- R/package-cache.R | 59 +++++++++++++++---------- R/packages-gz.R | 23 +++++---- README.md | 82 ++++++++++++++++++++++------------- man/cranlike_metadata_cache.Rd | 5 ++ man/package_cache.Rd | 15 +++--- tests/async/helper.R | 25 ++++++++-- tests/async/test-cancel-early.R | 4 - tests/testthat/helper-async.R | 6 -- tests/testthat/test-async-http.R | 21 +++++--- tests/testthat/test-cache.R | 11 ++-- tests/testthat/test-cran-metadata.R |only tests/testthat/test-metadata-api.R | 2 tests/testthat/test-metadata-cache.R | 20 +++++--- tests/testthat/test-metadata-utils.R | 18 ++++--- 21 files changed, 260 insertions(+), 180 deletions(-)
More information about paws.networking at CRAN
Permanent link
More information about paws.management at CRAN
Permanent link
More information about paws.customer.engagement at CRAN
Permanent link
More information about paws.cost.management at CRAN
Permanent link
Title: Quantifying Performance of a Binary Classifier Through Weight of
Evidence
Description: The distributions of the weight of evidence (log Bayes factor) favouring case over noncase status in a test dataset (or test folds generated by cross-validation) can be used to quantify the performance of a diagnostic test (McKeigue (2018), <doi:10.1177/0962280218776989>). The package can be used with any test dataset on which you have observed case-control status and have computed prior and posterior probabilities of case status using a model learned on a training dataset. To quantify how the predictor will behave as a risk stratifier, the quantiles of the distributions of weight of evidence in cases and controls can be calculated and plotted.
Author: Paul McKeigue [aut] (<https://orcid.org/0000-0002-5217-1034>),
Marco Colombo [ctb, cre] (<https://orcid.org/0000-0001-6672-0623>)
Maintainer: Marco Colombo <mar.colombo13@gmail.com>
Diff between wevid versions 0.6 dated 2019-04-04 and 0.6.1 dated 2019-05-13
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/plots.R | 5 +++-- R/wdists.R | 5 +++-- 4 files changed, 14 insertions(+), 12 deletions(-)
Title: Extra Themes, Scales and Geoms for 'ggplot2'
Description: Some extra themes, geoms, and scales for 'ggplot2'.
Provides 'ggplot2' themes and scales that replicate the look of plots
by Edward Tufte, Stephen Few, 'Fivethirtyeight', 'The Economist', 'Stata',
'Excel', and 'The Wall Street Journal', among others.
Provides 'geoms' for Tufte's box plot and range frame.
Author: Jeffrey B. Arnold [aut, cre] (<https://orcid.org/0000-0001-9953-3904>),
Gergely Daroczi [ctb],
Bo Werth [ctb],
Brian Weitzner [ctb],
Joshua Kunst [ctb],
Baptise Auguie [ctb],
Bob Rudis [ctb],
Hadley Wickham [ctb] (Code from the ggplot2 package.),
Justin Talbot [ctb] (Code from the labeling package),
Joshua London [ctb]
Maintainer: Jeffrey B. Arnold <jeffrey.arnold@gmail.com>
Diff between ggthemes versions 4.1.1 dated 2019-04-09 and 4.2.0 dated 2019-05-13
DESCRIPTION | 6 +- MD5 | 43 ++++++++++---------- NAMESPACE | 1 NEWS.md | 8 +++ R/clean.R |only R/tableau.R | 11 +++-- build/ggthemes.pdf |binary inst/examples/ex-canva_pal.R | 41 +++++++++++-------- inst/examples/ex-scale_color_tableau.R | 3 + inst/examples/ex-scale_linetype_stata.R | 21 ++++------ inst/examples/ex-theme_clean.R |only inst/examples/ex-theme_pander.R | 27 ++++++------ man/canva_pal.Rd | 41 +++++++++++-------- man/canva_palettes.Rd | 41 +++++++++++-------- man/scale_color_tableau.Rd | 67 ++++++-------------------------- man/scale_linetype_stata.Rd | 21 ++++------ man/theme_base.Rd | 3 - man/theme_clean.Rd |only man/theme_foundation.Rd | 4 - man/theme_igray.Rd | 1 man/theme_pander.Rd | 27 ++++++------ man/theme_par.Rd | 1 man/theme_solid.Rd | 1 tests/testthat/test-tableau.R | 2 24 files changed, 188 insertions(+), 182 deletions(-)
Title: Edit an 'Antares' Simulation
Description: Edit an 'Antares' simulation before running it : create new areas, links, thermal
clusters or binding constraints or edit existing ones. Update 'Antares' general & optimization settings.
'Antares' is an open source power system generator, more information available here : <https://antares-simulator.org/>.
Author: Frederic Breant [aut, cre],
Victor Perrier [aut],
Baptiste Seguinot [ctb],
Benoit Thieurmel [ctb],
Titouan Robert [ctb],
Jalal-Edine Zawam [ctb],
Etienne Sanchez [ctb],
RTE [cph]
Maintainer: Frederic Breant <frederic.breant@rte-france.com>
Diff between antaresEditObject versions 0.1.5 dated 2018-12-21 and 0.1.6 dated 2019-05-13
DESCRIPTION | 8 +++-- MD5 | 50 ++++++++++++++++++------------- NAMESPACE | 6 +++ NEWS.md | 5 +++ R/checkVersion.R |only R/createArea.R | 52 ++++++++++++++++++++++++++++++--- R/createCluster.R | 2 - R/createLink.R | 50 ++++++++++++++++++++++++------- R/createStudy.R | 22 ++++++++----- R/editLink.R | 37 ++++++++++++++++++----- R/removeArea.R | 12 ++++++- R/scenarioBuilder.R | 2 + R/updateInputSettings.R |only R/updateOptimizationSettings.R | 2 - R/writeIni.R | 20 +++++++----- R/writeWaterValues.R |only README.md | 10 +++++- inst/newStudy/study.antares | 14 ++++---- inst/template-antares |only man/createArea.Rd | 6 +-- man/createCluster.Rd | 2 - man/createLink.Rd | 19 ++++++++---- man/createStudy.Rd | 2 - man/editLink.Rd | 29 ++++++++++++------ man/is_antares_v7.Rd |only man/propertiesLinkOptions.Rd | 12 +++++-- man/updateInputSettings.Rd |only man/updateOptimizationSettings.Rd | 2 - man/writeWaterValues.Rd |only tests/testthat/test-writewatervalues.R |only 30 files changed, 263 insertions(+), 101 deletions(-)
More information about antaresEditObject at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-27 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-21 1.4-1
2018-05-25 1.3-9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-06-06 0.2
2015-02-08 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-26 0.3.4
2017-05-10 0.3.0
2016-04-29 0.2.0
2015-04-18 0.1.4
2015-02-24 0.1.2
2015-02-23 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-01-04 0.2-8
2014-12-06 0.2-6
2012-01-12 0.1-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-22 0.5.4
2017-09-26 0.5.3
2017-01-13 0.5.2
2014-09-04 0.5.1
2013-12-18 0.5
2011-11-29 0.4
2011-05-04 0.3-4
2010-05-26 0.3-3
2009-06-14 0.3-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-11 1.0
Title: Produce Charts that you See on the Fingertips Website
Description: Use Fingertips charts to recreate the visualisations
that are displayed on the Fingertips website (<http://fingertips.phe.org.uk/>).
Author: Sebastian Fox [aut, cre]
Maintainer: Sebastian Fox <sebastian.fox@phe.gov.uk>
Diff between fingertipscharts versions 0.0.5 dated 2019-04-08 and 0.0.6 dated 2019-05-13
DESCRIPTION | 6 MD5 | 43 - NEWS.md | 6 R/dummy_data.R | 8 R/quick_charts.R | 33 + R/theme.R | 286 ++++++---- build/vignette.rds |binary inst/doc/quick_charts.html | 132 ++-- man/compare_areas.Rd | 8 man/theme_phe.Rd | 7 tests/figs/area-profiles-example/area-profiles-example.svg | 70 +- tests/figs/box-plots-example/box-plot-example.svg | 36 - tests/figs/box-plots/box-plots.svg | 20 tests/figs/compare-areas/asc-compare-areas.svg | 168 ++--- tests/figs/compare-areas/desc-compare-areas.svg | 168 ++--- tests/figs/compare-areas/desc-no-fill-compare-areas-displaying-values.svg |only tests/figs/compare-areas/desc-no-fill-compare-areas.svg | 32 - tests/figs/compare-areas/no-top-areas-asc-compare-areas.svg | 168 ++--- tests/figs/compare-areas/no-top-areas-desc-compare-areas.svg | 168 ++--- tests/figs/trends-example/trends-example.svg | 172 +++--- tests/figs/trends/with-fill-trends.svg | 124 ++-- tests/figs/trends/without-fill-trends.svg | 124 ++-- tests/testthat/test-compare-areas.R | 17 23 files changed, 988 insertions(+), 808 deletions(-)
More information about fingertipscharts at CRAN
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Title: Augments 'ASReml-R' in Fitting Mixed Models and Packages
Generally in Exploring Prediction Differences
Description: Assists in automating the testing of terms in mixed models when 'asreml' is
used to fit the models. Also used to display, in tables and graphs, predictions obtained
using any model fitting function and to explore differences between predictions.
The content falls into the following natural groupings: (i) Data, (ii) Object
manipulation functions, (iii) Model modification functions, (iv) Model testing functions,
(v) Model diagnostics functions, (vi) Prediction production and presentation functions,
(vii) Response transformation functions, and (viii) Miscellaneous functions. A history of
the fitting of a sequence of models is kept in a data frame. Procedures are available for
choosing models that conform to the hierarchy or marginality principle and for displaying
predictions for significant terms in tables and graphs. The 'asreml' package provides a
computationally efficient algorithm for fitting mixed models using Residual Maximum
Likelihood. It is a commercial packages that can be purchased from
'VSNi' <http://www.vsni.co.uk/> as 'asreml-R', who will supply a zip file for local
installation/updating. It is not needed for functions that are methods for 'alldiffs'
and 'data.frame' objects. The package 'asremPlus' can also be installed from
<http://chris.brien.name/rpackages/>.
Author: Chris Brien [aut, cre] (<https://orcid.org/0000-0003-0581-1817>)
Maintainer: Chris Brien <chris.brien@unisa.edu.au>
Diff between asremlPlus versions 4.1-22 dated 2019-03-04 and 4.1-26 dated 2019-05-13
asremlPlus-4.1-22/asremlPlus/man/reorderClassify.alldiffs.Rd |only asremlPlus-4.1-26/asremlPlus/DESCRIPTION | 15 asremlPlus-4.1-26/asremlPlus/MD5 | 57 +-- asremlPlus-4.1-26/asremlPlus/NAMESPACE | 11 asremlPlus-4.1-26/asremlPlus/R/S3methodsDeprecations.r | 13 asremlPlus-4.1-26/asremlPlus/R/alldiffs.r | 187 +++++++--- asremlPlus-4.1-26/asremlPlus/R/asremlPlusUtilities.r | 3 asremlPlus-4.1-26/asremlPlus/R/reml4.v8.r | 27 - asremlPlus-4.1-26/asremlPlus/build/partial.rdb |binary asremlPlus-4.1-26/asremlPlus/build/vignette.rds |binary asremlPlus-4.1-26/asremlPlus/inst/NEWS.Rd | 28 + asremlPlus-4.1-26/asremlPlus/inst/doc/Ladybird.pdf |binary asremlPlus-4.1-26/asremlPlus/inst/doc/Wheat.pdf |binary asremlPlus-4.1-26/asremlPlus/inst/doc/asremlPlus-manual.pdf |binary asremlPlus-4.1-26/asremlPlus/man/addBacktransforms.alldiffs.Rd |only asremlPlus-4.1-26/asremlPlus/man/allDifferences.data.frame.Rd | 24 - asremlPlus-4.1-26/asremlPlus/man/as.alldiffs.Rd | 2 asremlPlus-4.1-26/asremlPlus/man/asremlPlus-deprecated.Rd | 4 asremlPlus-4.1-26/asremlPlus/man/asremlPlus-package.Rd | 7 asremlPlus-4.1-26/asremlPlus/man/facCombine.alldiffs.Rd | 2 asremlPlus-4.1-26/asremlPlus/man/linTransform.alldiffs.Rd | 34 - asremlPlus-4.1-26/asremlPlus/man/predictPlus.asreml.Rd | 19 - asremlPlus-4.1-26/asremlPlus/man/predictPresent.asreml.Rd | 9 asremlPlus-4.1-26/asremlPlus/man/recalcLSD.alldiffs.Rd | 13 asremlPlus-4.1-26/asremlPlus/man/redoErrorIntervals.alldiffs.Rd | 19 - asremlPlus-4.1-26/asremlPlus/man/renewClassify.alldiffs.Rd |only asremlPlus-4.1-26/asremlPlus/man/sort.alldiffs.Rd | 4 asremlPlus-4.1-26/asremlPlus/tests/testthat/test3alldiffs.r | 40 +- asremlPlus-4.1-26/asremlPlus/tests/testthat/test4PredictionsPresentation.r | 23 + asremlPlus-4.1-26/asremlPlus/tests/testthat/test4alldiffs.r | 43 ++ asremlPlus-4.1-26/asremlPlus/tests/testthat/test4alldiffslme.r | 54 ++ 31 files changed, 461 insertions(+), 177 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-10 0.5.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-07 0.1.1
2019-04-24 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-09-27 1.1.6
2016-08-19 1.1.3
2016-06-23 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-02 1.7.1.1
2019-03-23 1.7.1.0
2018-10-16 1.7.0.0
2018-05-28 1.6.0.0
2018-02-22 1.5.3.7
2018-02-17 1.5.3.5
2018-01-21 1.5.3.1
2017-11-16 1.5.2.5
2017-10-23 1.5.2.4
2017-08-30 1.5.1.2
2017-07-02 1.5.1.1
2017-05-09 1.5.0.0
2017-03-04 1.4.1.2
2017-01-18 1.3.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-12 2.0.0
Title: Uniform Manifold Approximation and Projection
Description: Uniform manifold approximation and projection is a technique
for dimension reduction. The algorithm was described by McInnes and
Healy (2018) in <arXiv:1802.03426>. This package provides an interface
for two implementations. One is written from scratch, including components
for nearest-neighbor search and for embedding. The second implementation
is a wrapper for 'python' package 'umap-learn' (requires separate
installation, see vignette for more details).
Author: Tomasz Konopka [aut, cre]
Maintainer: Tomasz Konopka <tokonopka@gmail.com>
Diff between umap versions 0.2.1.0 dated 2019-04-30 and 0.2.2.0 dated 2019-05-13
DESCRIPTION | 6 ++--- MD5 | 21 ++++++++++--------- R/umap_checks.R | 40 ++++++++++++++++++++++++++++++++++++ R/umap_learn.R | 5 ++-- R/umap_naive.R | 3 ++ inst/doc/umap.html | 24 ++++++++++----------- inst/doc/umap_learn.html | 2 - man/umap.learn.Rd | 4 +-- man/umap.warning.Rd |only tests/testthat/test_checks.R | 47 +++++++++++++++++++++++++++++++++++++++++++ tests/testthat/test_naive.R | 5 +++- tests/testthat/test_python.R | 13 +++++++++-- 12 files changed, 136 insertions(+), 34 deletions(-)
Title: The UK National Electricity Transmission System Dataset
Description: A time series of the national grid demand (high-voltage electric power transmission network) in the UK since 2011.
Author: Rami Krispin
Maintainer: Rami Krispin <rami.krispin@gmail.com>
Diff between UKgrid versions 0.1.0 dated 2018-09-17 and 0.1.1 dated 2019-05-13
DESCRIPTION | 6 MD5 | 10 README.md | 11 build/vignette.rds |binary data/UKgrid.rda |binary inst/doc/UKgrid_vignette.html | 2335 +++++++++++++++++++++++++++++++++++++++--- 6 files changed, 2205 insertions(+), 157 deletions(-)